Multiple sequence alignment - TraesCS2D01G205700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G205700 chr2D 100.000 5903 0 0 1 5903 157379890 157385792 0.000000e+00 10901.0
1 TraesCS2D01G205700 chr2D 100.000 358 0 0 6214 6571 157386103 157386460 0.000000e+00 662.0
2 TraesCS2D01G205700 chr2D 83.582 603 63 17 2844 3446 621825325 621825891 3.490000e-147 532.0
3 TraesCS2D01G205700 chr2D 88.950 181 20 0 2210 2390 621824895 621825075 2.380000e-54 224.0
4 TraesCS2D01G205700 chr2D 84.559 136 14 5 1999 2134 621824689 621824817 1.920000e-25 128.0
5 TraesCS2D01G205700 chr2D 93.846 65 3 1 2417 2480 621825070 621825134 5.420000e-16 97.1
6 TraesCS2D01G205700 chr2D 100.000 33 0 0 2386 2418 157382204 157382236 1.980000e-05 62.1
7 TraesCS2D01G205700 chr2D 100.000 33 0 0 2315 2347 157382275 157382307 1.980000e-05 62.1
8 TraesCS2D01G205700 chr2A 91.076 5334 289 84 585 5835 167332008 167337237 0.000000e+00 7040.0
9 TraesCS2D01G205700 chr2A 93.294 343 17 4 6214 6550 167337261 167337603 9.840000e-138 501.0
10 TraesCS2D01G205700 chr2B 94.963 2402 87 20 1 2390 214821426 214823805 0.000000e+00 3735.0
11 TraesCS2D01G205700 chr2B 95.798 1785 52 6 3336 5117 214826355 214828119 0.000000e+00 2859.0
12 TraesCS2D01G205700 chr2B 92.484 958 21 11 2415 3342 214823798 214824734 0.000000e+00 1323.0
13 TraesCS2D01G205700 chr2B 92.798 722 38 7 5116 5836 214828208 214828916 0.000000e+00 1033.0
14 TraesCS2D01G205700 chr2B 91.954 261 12 6 6230 6488 214829039 214829292 2.250000e-94 357.0
15 TraesCS2D01G205700 chr6B 84.791 1052 104 31 2844 3883 713798183 713799190 0.000000e+00 1005.0
16 TraesCS2D01G205700 chr6B 83.895 267 17 10 2129 2393 713797633 713797875 1.420000e-56 231.0
17 TraesCS2D01G205700 chr6B 82.326 215 26 5 2503 2707 713797926 713798138 6.770000e-40 176.0
18 TraesCS2D01G205700 chr6B 82.258 186 17 10 1957 2141 713797448 713797618 5.310000e-31 147.0
19 TraesCS2D01G205700 chr1A 84.994 893 86 21 2844 3727 417916460 417917313 0.000000e+00 863.0
20 TraesCS2D01G205700 chr1A 77.944 467 34 35 1957 2393 417915778 417916205 1.840000e-55 228.0
21 TraesCS2D01G205700 chr1A 77.381 168 29 9 175 337 2839831 2839994 2.520000e-14 91.6
22 TraesCS2D01G205700 chr5B 84.795 730 68 18 2844 3569 545003331 545002641 0.000000e+00 693.0
23 TraesCS2D01G205700 chr5B 85.393 267 23 9 2129 2393 545003893 545003641 5.050000e-66 263.0
24 TraesCS2D01G205700 chr5B 82.796 186 16 9 1957 2141 545004078 545003908 1.140000e-32 152.0
25 TraesCS2D01G205700 chr3B 81.942 659 82 15 3062 3719 33411054 33411676 2.100000e-144 523.0
26 TraesCS2D01G205700 chr5D 90.725 345 25 3 2844 3184 388858778 388858437 2.790000e-123 453.0
27 TraesCS2D01G205700 chr5D 83.521 267 18 10 2129 2393 388859328 388859086 6.630000e-55 226.0
28 TraesCS2D01G205700 chr5D 88.950 181 20 0 2210 2390 310176250 310176070 2.380000e-54 224.0
29 TraesCS2D01G205700 chr5D 83.721 215 23 6 2503 2707 388859035 388858823 6.720000e-45 193.0
30 TraesCS2D01G205700 chr5D 83.333 186 15 9 1957 2141 310176490 310176320 2.450000e-34 158.0
31 TraesCS2D01G205700 chr5D 83.333 186 15 8 1957 2141 388859513 388859343 2.450000e-34 158.0
32 TraesCS2D01G205700 chr5D 93.750 64 4 0 2417 2480 310176075 310176012 5.420000e-16 97.1
33 TraesCS2D01G205700 chr6D 81.600 125 17 6 195 316 57474496 57474617 1.510000e-16 99.0
34 TraesCS2D01G205700 chr7D 79.487 117 21 3 221 336 3103517 3103631 5.460000e-11 80.5
35 TraesCS2D01G205700 chr7D 79.487 117 21 3 221 336 3160251 3160137 5.460000e-11 80.5
36 TraesCS2D01G205700 chr4B 78.095 105 20 3 196 299 3907842 3907740 5.500000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G205700 chr2D 157379890 157386460 6570 False 2921.800000 10901 100.00000 1 6571 4 chr2D.!!$F1 6570
1 TraesCS2D01G205700 chr2D 621824689 621825891 1202 False 245.275000 532 87.73425 1999 3446 4 chr2D.!!$F2 1447
2 TraesCS2D01G205700 chr2A 167332008 167337603 5595 False 3770.500000 7040 92.18500 585 6550 2 chr2A.!!$F1 5965
3 TraesCS2D01G205700 chr2B 214821426 214829292 7866 False 1861.400000 3735 93.59940 1 6488 5 chr2B.!!$F1 6487
4 TraesCS2D01G205700 chr6B 713797448 713799190 1742 False 389.750000 1005 83.31750 1957 3883 4 chr6B.!!$F1 1926
5 TraesCS2D01G205700 chr1A 417915778 417917313 1535 False 545.500000 863 81.46900 1957 3727 2 chr1A.!!$F2 1770
6 TraesCS2D01G205700 chr5B 545002641 545004078 1437 True 369.333333 693 84.32800 1957 3569 3 chr5B.!!$R1 1612
7 TraesCS2D01G205700 chr3B 33411054 33411676 622 False 523.000000 523 81.94200 3062 3719 1 chr3B.!!$F1 657
8 TraesCS2D01G205700 chr5D 388858437 388859513 1076 True 257.500000 453 85.32500 1957 3184 4 chr5D.!!$R2 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 303 0.097674 TAACGCGACTAGAACGAGCC 59.902 55.000 15.93 1.1 34.29 4.70 F
1081 1087 0.096454 GCTTGGGTTGTTATCGCGTC 59.904 55.000 5.77 0.0 0.00 5.19 F
1495 1503 0.532862 ATCGCCATTTACGCTGGAGG 60.533 55.000 0.00 0.0 35.70 4.30 F
1611 1626 1.532868 GGCAGATGGCGTTTGCTATAG 59.467 52.381 20.01 0.0 43.04 1.31 F
3175 3280 1.072173 TGCTTTACTCTTGCCAGCTCA 59.928 47.619 0.00 0.0 0.00 4.26 F
4196 5944 3.719268 ACATGCTTGATTAGGTCACCA 57.281 42.857 6.60 0.0 36.32 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 1247 0.179048 CAGCCCCATATCGCACAAGA 60.179 55.0 0.00 0.0 0.00 3.02 R
2404 2459 0.036164 TGTGAAAGCATACCGCCACT 59.964 50.0 0.00 0.0 44.04 4.00 R
2406 2461 0.036164 ACTGTGAAAGCATACCGCCA 59.964 50.0 0.00 0.0 44.04 5.69 R
3602 5346 0.044092 TGGGAGCCTGGATGGAAGTA 59.956 55.0 0.00 0.0 38.35 2.24 R
4432 6184 1.145571 AGAGGGTTTGGCACCTAACA 58.854 50.0 14.47 0.0 46.38 2.41 R
5758 7634 0.917259 CACGAGAATACAGACAGCGC 59.083 55.0 0.00 0.0 0.00 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 1.071542 TCACGGGAGAAAGATGTGCAA 59.928 47.619 0.00 0.00 0.00 4.08
144 145 3.059884 TGTGCAAAAGTCGATCTCACTC 58.940 45.455 0.00 0.00 0.00 3.51
198 201 5.845391 TTTTCGTGAAAAGACCCAAATCT 57.155 34.783 3.74 0.00 35.57 2.40
213 216 9.799106 AGACCCAAATCTATATAAAGGTTCATG 57.201 33.333 0.00 0.00 0.00 3.07
273 276 0.821517 ATGCACCGTAGACCATCGAA 59.178 50.000 0.00 0.00 0.00 3.71
277 280 0.449388 ACCGTAGACCATCGAACGAC 59.551 55.000 6.64 0.00 34.22 4.34
287 290 0.795735 ATCGAACGACCACTAACGCG 60.796 55.000 3.53 3.53 0.00 6.01
300 303 0.097674 TAACGCGACTAGAACGAGCC 59.902 55.000 15.93 1.10 34.29 4.70
303 306 1.868251 GCGACTAGAACGAGCCGTG 60.868 63.158 15.42 0.00 39.99 4.94
321 324 3.026311 GACGCGTCGTTGTCGGTT 61.026 61.111 25.19 0.00 41.37 4.44
322 325 3.259232 GACGCGTCGTTGTCGGTTG 62.259 63.158 25.19 0.00 41.37 3.77
388 391 9.535878 AAAATTTTATTAGAAGCGGTTTTGACA 57.464 25.926 0.37 0.00 0.00 3.58
453 456 3.819368 TGACCAATTCTTCTTGAGCACA 58.181 40.909 0.00 0.00 0.00 4.57
460 463 6.267817 CAATTCTTCTTGAGCACACAAAGAA 58.732 36.000 16.89 16.89 39.19 2.52
513 516 5.635280 GGAAAAAGGAGAAATTAGCTTGTGC 59.365 40.000 0.00 0.00 40.05 4.57
687 690 0.165944 CAATGCGTTTGTCTCCGACC 59.834 55.000 0.00 0.00 0.00 4.79
747 750 6.429385 CAGAGGAAGCTTTGTTTTCATCTACT 59.571 38.462 0.00 0.00 41.06 2.57
1081 1087 0.096454 GCTTGGGTTGTTATCGCGTC 59.904 55.000 5.77 0.00 0.00 5.19
1114 1120 1.867919 CGCTCTGTTCCTGGAGACGT 61.868 60.000 0.00 0.00 0.00 4.34
1225 1231 1.155424 TTGTGGTTGTCGAAGGCGTC 61.155 55.000 0.00 0.00 38.98 5.19
1235 1241 2.927477 GTCGAAGGCGTCATATTTGTCA 59.073 45.455 0.55 0.00 38.98 3.58
1236 1242 3.555956 GTCGAAGGCGTCATATTTGTCAT 59.444 43.478 0.55 0.00 38.98 3.06
1238 1244 5.405571 GTCGAAGGCGTCATATTTGTCATAT 59.594 40.000 0.55 0.00 38.98 1.78
1239 1245 5.633601 TCGAAGGCGTCATATTTGTCATATC 59.366 40.000 0.55 0.00 38.98 1.63
1240 1246 5.635280 CGAAGGCGTCATATTTGTCATATCT 59.365 40.000 0.55 0.00 0.00 1.98
1241 1247 6.146184 CGAAGGCGTCATATTTGTCATATCTT 59.854 38.462 0.55 0.00 0.00 2.40
1256 1264 5.349817 GTCATATCTTCTTGTGCGATATGGG 59.650 44.000 14.80 0.00 43.38 4.00
1257 1265 2.620251 TCTTCTTGTGCGATATGGGG 57.380 50.000 0.00 0.00 0.00 4.96
1313 1321 7.857389 GGAAAATTGGAGCATTTTGTTTTCTTC 59.143 33.333 0.00 0.00 35.53 2.87
1495 1503 0.532862 ATCGCCATTTACGCTGGAGG 60.533 55.000 0.00 0.00 35.70 4.30
1607 1622 2.196997 TAGGGCAGATGGCGTTTGCT 62.197 55.000 20.01 5.79 46.16 3.91
1611 1626 1.532868 GGCAGATGGCGTTTGCTATAG 59.467 52.381 20.01 0.00 43.04 1.31
1615 1630 4.377021 CAGATGGCGTTTGCTATAGGTAA 58.623 43.478 1.04 0.00 43.04 2.85
1619 1634 4.186159 TGGCGTTTGCTATAGGTAAGTTC 58.814 43.478 1.04 0.00 42.25 3.01
1730 1745 3.295093 TCTTGTGATGTGCTTTTGGGAA 58.705 40.909 0.00 0.00 0.00 3.97
1731 1746 3.896888 TCTTGTGATGTGCTTTTGGGAAT 59.103 39.130 0.00 0.00 0.00 3.01
1732 1747 3.940209 TGTGATGTGCTTTTGGGAATC 57.060 42.857 0.00 0.00 0.00 2.52
1810 1826 6.128795 GCTACTTATTGCGGTCAATCTATGTC 60.129 42.308 1.82 0.00 41.68 3.06
1833 1849 5.010617 TCAGGGAAGGTAGTTGCAAATTTTC 59.989 40.000 4.05 7.25 0.00 2.29
1986 2002 5.936956 CAGAGTTCTCTGAAAGCTTGGTTAT 59.063 40.000 21.08 0.00 39.99 1.89
1987 2003 6.091986 CAGAGTTCTCTGAAAGCTTGGTTATC 59.908 42.308 21.08 0.00 39.99 1.75
1988 2004 6.013812 AGAGTTCTCTGAAAGCTTGGTTATCT 60.014 38.462 0.00 0.00 0.00 1.98
1989 2005 6.538263 AGTTCTCTGAAAGCTTGGTTATCTT 58.462 36.000 0.00 0.00 0.00 2.40
1990 2006 7.680730 AGTTCTCTGAAAGCTTGGTTATCTTA 58.319 34.615 0.00 0.00 0.00 2.10
1991 2007 8.157476 AGTTCTCTGAAAGCTTGGTTATCTTAA 58.843 33.333 0.00 0.00 0.00 1.85
1992 2008 8.784043 GTTCTCTGAAAGCTTGGTTATCTTAAA 58.216 33.333 0.00 0.00 0.00 1.52
1993 2009 9.520515 TTCTCTGAAAGCTTGGTTATCTTAAAT 57.479 29.630 0.00 0.00 0.00 1.40
2383 2438 7.891782 CAAGTATGCAAATTAACAGAGCAATG 58.108 34.615 0.00 0.00 38.85 2.82
2384 2439 6.038356 AGTATGCAAATTAACAGAGCAATGC 58.962 36.000 0.00 0.00 38.85 3.56
2385 2440 4.524316 TGCAAATTAACAGAGCAATGCT 57.476 36.364 7.79 7.79 43.88 3.79
2386 2441 4.885413 TGCAAATTAACAGAGCAATGCTT 58.115 34.783 9.91 0.00 39.88 3.91
2387 2442 5.299148 TGCAAATTAACAGAGCAATGCTTT 58.701 33.333 9.91 0.00 39.88 3.51
2388 2443 5.406175 TGCAAATTAACAGAGCAATGCTTTC 59.594 36.000 9.91 0.00 39.88 2.62
2389 2444 5.406175 GCAAATTAACAGAGCAATGCTTTCA 59.594 36.000 9.91 0.00 39.88 2.69
2390 2445 6.073657 GCAAATTAACAGAGCAATGCTTTCAA 60.074 34.615 9.91 0.27 39.88 2.69
2391 2446 7.518689 GCAAATTAACAGAGCAATGCTTTCAAA 60.519 33.333 9.91 1.39 39.88 2.69
2392 2447 8.500773 CAAATTAACAGAGCAATGCTTTCAAAT 58.499 29.630 9.91 3.78 39.88 2.32
2393 2448 8.611654 AATTAACAGAGCAATGCTTTCAAATT 57.388 26.923 9.91 9.46 39.88 1.82
2394 2449 9.709495 AATTAACAGAGCAATGCTTTCAAATTA 57.291 25.926 9.91 0.64 39.88 1.40
2395 2450 8.746922 TTAACAGAGCAATGCTTTCAAATTAG 57.253 30.769 9.91 0.00 39.88 1.73
2396 2451 6.579666 ACAGAGCAATGCTTTCAAATTAGA 57.420 33.333 9.91 0.00 39.88 2.10
2397 2452 7.166691 ACAGAGCAATGCTTTCAAATTAGAT 57.833 32.000 9.91 0.00 39.88 1.98
2398 2453 7.033791 ACAGAGCAATGCTTTCAAATTAGATG 58.966 34.615 9.91 0.00 39.88 2.90
2399 2454 7.094075 ACAGAGCAATGCTTTCAAATTAGATGA 60.094 33.333 9.91 0.00 39.88 2.92
2400 2455 7.758076 CAGAGCAATGCTTTCAAATTAGATGAA 59.242 33.333 9.91 0.00 39.88 2.57
2401 2456 8.475639 AGAGCAATGCTTTCAAATTAGATGAAT 58.524 29.630 9.91 0.00 39.88 2.57
2402 2457 8.644318 AGCAATGCTTTCAAATTAGATGAATC 57.356 30.769 0.00 0.00 33.89 2.52
2403 2458 7.434307 AGCAATGCTTTCAAATTAGATGAATCG 59.566 33.333 0.00 0.00 33.89 3.34
2404 2459 7.433131 GCAATGCTTTCAAATTAGATGAATCGA 59.567 33.333 0.00 0.00 36.72 3.59
2405 2460 8.955002 CAATGCTTTCAAATTAGATGAATCGAG 58.045 33.333 0.00 0.00 36.72 4.04
2406 2461 7.615582 TGCTTTCAAATTAGATGAATCGAGT 57.384 32.000 0.00 0.00 36.72 4.18
2407 2462 7.466805 TGCTTTCAAATTAGATGAATCGAGTG 58.533 34.615 0.00 0.00 36.72 3.51
2408 2463 6.909357 GCTTTCAAATTAGATGAATCGAGTGG 59.091 38.462 0.00 0.00 36.72 4.00
2409 2464 5.991328 TCAAATTAGATGAATCGAGTGGC 57.009 39.130 0.00 0.00 0.00 5.01
2410 2465 4.507756 TCAAATTAGATGAATCGAGTGGCG 59.492 41.667 0.00 0.00 42.69 5.69
2411 2466 2.509052 TTAGATGAATCGAGTGGCGG 57.491 50.000 0.00 0.00 41.33 6.13
2412 2467 1.399714 TAGATGAATCGAGTGGCGGT 58.600 50.000 0.00 0.00 41.33 5.68
2413 2468 1.399714 AGATGAATCGAGTGGCGGTA 58.600 50.000 0.00 0.00 41.33 4.02
2471 2527 7.571080 AATGTTGCTTTTGAATGGTGAAATT 57.429 28.000 0.00 0.00 0.00 1.82
2488 2544 8.296713 TGGTGAAATTACTGAAATTAACAGAGC 58.703 33.333 16.10 5.51 36.76 4.09
2489 2545 8.296713 GGTGAAATTACTGAAATTAACAGAGCA 58.703 33.333 16.10 3.80 36.76 4.26
2490 2546 9.677567 GTGAAATTACTGAAATTAACAGAGCAA 57.322 29.630 16.10 9.12 36.76 3.91
2493 2549 8.693542 AATTACTGAAATTAACAGAGCAATGC 57.306 30.769 16.10 0.00 35.98 3.56
2494 2550 5.972107 ACTGAAATTAACAGAGCAATGCT 57.028 34.783 7.79 7.79 43.88 3.79
2495 2551 6.336842 ACTGAAATTAACAGAGCAATGCTT 57.663 33.333 9.91 0.00 39.88 3.91
2496 2552 6.752168 ACTGAAATTAACAGAGCAATGCTTT 58.248 32.000 9.91 0.00 39.88 3.51
2497 2553 6.865205 ACTGAAATTAACAGAGCAATGCTTTC 59.135 34.615 9.91 7.13 39.88 2.62
2498 2554 6.747125 TGAAATTAACAGAGCAATGCTTTCA 58.253 32.000 9.91 9.81 39.88 2.69
2499 2555 6.642131 TGAAATTAACAGAGCAATGCTTTCAC 59.358 34.615 9.91 0.00 39.88 3.18
2500 2556 5.710513 ATTAACAGAGCAATGCTTTCACA 57.289 34.783 9.91 0.00 39.88 3.58
3161 3266 6.249035 GCAGGTTATGTTTGTACTGCTTTA 57.751 37.500 7.17 0.00 45.63 1.85
3171 3276 3.664107 TGTACTGCTTTACTCTTGCCAG 58.336 45.455 0.00 0.00 0.00 4.85
3175 3280 1.072173 TGCTTTACTCTTGCCAGCTCA 59.928 47.619 0.00 0.00 0.00 4.26
3186 3291 5.472148 TCTTGCCAGCTCAAACATAATTTG 58.528 37.500 0.00 0.00 0.00 2.32
3415 5155 8.180267 AGAAGCTTCTTGATCGATTACAAATTG 58.820 33.333 23.49 0.00 32.55 2.32
3442 5186 9.935241 ATCGAACATATATAGCAGACTTTGATT 57.065 29.630 0.00 0.00 0.00 2.57
3459 5203 4.801330 TGATTAGTGATGACCGTTGACT 57.199 40.909 0.00 0.00 0.00 3.41
3602 5346 8.963725 TCAGATGTTAGATCTTGAATGCATTTT 58.036 29.630 14.33 0.00 0.00 1.82
4069 5817 8.438676 AAGGTTTTCTATCATCAATTCTACGG 57.561 34.615 0.00 0.00 0.00 4.02
4196 5944 3.719268 ACATGCTTGATTAGGTCACCA 57.281 42.857 6.60 0.00 36.32 4.17
4432 6184 9.327628 GACAGTTAGAGACTAACTTTTCCTTTT 57.672 33.333 17.80 0.00 36.65 2.27
4577 6329 4.083271 GGTTTGCTACTTTCTAGCTTGGTG 60.083 45.833 0.00 0.00 40.95 4.17
4589 6341 1.239968 GCTTGGTGCAGTTCCTCCTG 61.240 60.000 0.00 0.00 42.31 3.86
4995 6749 9.912634 CTTTTGATGTGCTTATTTCTTAGGAAA 57.087 29.630 2.14 2.14 44.26 3.13
5245 7103 8.721478 ACAATTGTAACATAACTTCAGCAGTAG 58.279 33.333 9.97 0.00 32.94 2.57
5357 7216 5.187772 AGAAAGTTGCCATTTCCCCTAAATC 59.812 40.000 2.74 0.00 35.54 2.17
5433 7292 2.178876 TACCGTGGTGTGGCTCATGG 62.179 60.000 0.72 0.00 43.66 3.66
5448 7307 3.544834 GCTCATGGTCGTGAATTTCATCG 60.545 47.826 1.78 8.38 0.00 3.84
5468 7327 4.421058 TCGTTCAGATAATCACTTCCACG 58.579 43.478 0.00 0.00 0.00 4.94
5636 7511 1.064240 TGCCATCAGTTCCTGCATGAT 60.064 47.619 0.00 0.00 34.02 2.45
5682 7557 3.433598 GGTCATTTACTGGATAGCTGGCA 60.434 47.826 0.00 0.00 0.00 4.92
5684 7559 4.453819 GTCATTTACTGGATAGCTGGCATC 59.546 45.833 0.00 0.00 0.00 3.91
5724 7600 7.331934 CACATTGATACAGTGTATATAGCCCAC 59.668 40.741 15.77 2.02 32.72 4.61
5732 7608 3.329520 GTGTATATAGCCCACCCCATCAA 59.670 47.826 0.00 0.00 0.00 2.57
5785 7661 2.826128 TCTGTATTCTCGTGGAGCACTT 59.174 45.455 0.00 0.00 31.34 3.16
5850 7729 1.589803 AAAAAGGAAGTCACCGTCCG 58.410 50.000 0.00 0.00 43.28 4.79
5851 7730 0.466963 AAAAGGAAGTCACCGTCCGT 59.533 50.000 0.00 0.00 43.28 4.69
5852 7731 0.033090 AAAGGAAGTCACCGTCCGTC 59.967 55.000 0.00 0.00 43.28 4.79
5853 7732 2.126580 GGAAGTCACCGTCCGTCG 60.127 66.667 0.00 0.00 39.52 5.12
6314 8194 4.545823 TGATGTTGTCGTTTTTGTCTCC 57.454 40.909 0.00 0.00 0.00 3.71
6323 8203 2.661594 GTTTTTGTCTCCGCATTGGTC 58.338 47.619 0.00 0.00 39.52 4.02
6456 8338 8.862550 AAAAACTTCTGTCTTTTTATCAGCTG 57.137 30.769 7.63 7.63 0.00 4.24
6467 8352 9.548208 GTCTTTTTATCAGCTGTCATTTTACTC 57.452 33.333 14.67 0.00 0.00 2.59
6489 8374 5.386060 TCTCTTTACTCTTCAGTGAGGTCA 58.614 41.667 1.77 0.00 38.32 4.02
6511 8396 1.439679 GTTGGCTGACGAGGTAAAGG 58.560 55.000 0.00 0.00 0.00 3.11
6523 8408 0.330604 GGTAAAGGGTGGGAGGAACC 59.669 60.000 0.00 0.00 36.94 3.62
6535 8420 0.249911 GAGGAACCGTGCAGTCTTGT 60.250 55.000 0.00 0.00 0.00 3.16
6537 8422 0.307760 GGAACCGTGCAGTCTTGTTG 59.692 55.000 0.00 0.00 0.00 3.33
6545 8430 3.665323 CGTGCAGTCTTGTTGTGCTTATC 60.665 47.826 0.00 0.00 38.09 1.75
6550 8435 4.391216 CAGTCTTGTTGTGCTTATCTGGAG 59.609 45.833 0.00 0.00 0.00 3.86
6551 8436 3.686726 GTCTTGTTGTGCTTATCTGGAGG 59.313 47.826 0.00 0.00 0.00 4.30
6552 8437 2.113860 TGTTGTGCTTATCTGGAGGC 57.886 50.000 0.00 0.00 0.00 4.70
6553 8438 1.630369 TGTTGTGCTTATCTGGAGGCT 59.370 47.619 0.00 0.00 0.00 4.58
6554 8439 2.284190 GTTGTGCTTATCTGGAGGCTC 58.716 52.381 5.78 5.78 0.00 4.70
6555 8440 0.461548 TGTGCTTATCTGGAGGCTCG 59.538 55.000 8.69 0.00 0.00 5.03
6556 8441 0.747255 GTGCTTATCTGGAGGCTCGA 59.253 55.000 8.69 3.26 0.00 4.04
6557 8442 1.035923 TGCTTATCTGGAGGCTCGAG 58.964 55.000 19.28 19.28 0.00 4.04
6558 8443 0.319469 GCTTATCTGGAGGCTCGAGC 60.319 60.000 29.38 29.38 41.14 5.03
6559 8444 0.039617 CTTATCTGGAGGCTCGAGCG 60.040 60.000 29.81 16.44 43.26 5.03
6560 8445 0.465642 TTATCTGGAGGCTCGAGCGA 60.466 55.000 29.81 21.09 43.26 4.93
6561 8446 0.886938 TATCTGGAGGCTCGAGCGAG 60.887 60.000 29.81 21.25 44.56 5.03
6562 8447 2.902423 ATCTGGAGGCTCGAGCGAGT 62.902 60.000 29.81 17.61 43.70 4.18
6563 8448 2.676822 TGGAGGCTCGAGCGAGTT 60.677 61.111 29.81 15.78 43.70 3.01
6564 8449 2.219325 CTGGAGGCTCGAGCGAGTTT 62.219 60.000 29.81 13.29 43.70 2.66
6565 8450 1.807573 GGAGGCTCGAGCGAGTTTG 60.808 63.158 29.81 0.00 43.70 2.93
6566 8451 1.807573 GAGGCTCGAGCGAGTTTGG 60.808 63.158 29.81 0.00 43.70 3.28
6567 8452 2.214181 GAGGCTCGAGCGAGTTTGGA 62.214 60.000 29.81 0.00 43.70 3.53
6568 8453 2.095252 GGCTCGAGCGAGTTTGGAC 61.095 63.158 29.81 9.93 43.70 4.02
6569 8454 1.080434 GCTCGAGCGAGTTTGGACT 60.080 57.895 23.61 0.00 43.70 3.85
6570 8455 1.347817 GCTCGAGCGAGTTTGGACTG 61.348 60.000 23.61 0.00 43.70 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.476085 TCCATGCGGTATTTTGCCAAG 59.524 47.619 0.00 0.00 0.00 3.61
68 69 3.243501 ACATGATCCATGCGGTATTTTGC 60.244 43.478 0.00 0.00 44.80 3.68
129 130 9.575783 GTAGATTTTTAGAGTGAGATCGACTTT 57.424 33.333 0.00 0.22 0.00 2.66
213 216 4.036734 TGTTTGAGGTGCTTTGTGATTCTC 59.963 41.667 0.00 0.00 0.00 2.87
257 260 0.448990 TCGTTCGATGGTCTACGGTG 59.551 55.000 5.35 0.00 34.93 4.94
261 264 1.471684 AGTGGTCGTTCGATGGTCTAC 59.528 52.381 0.00 0.00 0.00 2.59
273 276 0.445436 CTAGTCGCGTTAGTGGTCGT 59.555 55.000 5.77 0.00 0.00 4.34
277 280 1.129251 TCGTTCTAGTCGCGTTAGTGG 59.871 52.381 5.77 0.00 0.00 4.00
287 290 0.179169 GTCCACGGCTCGTTCTAGTC 60.179 60.000 0.00 0.00 38.32 2.59
300 303 3.749373 GACAACGACGCGTCCACG 61.749 66.667 31.84 23.76 39.99 4.94
303 306 4.988486 ACCGACAACGACGCGTCC 62.988 66.667 31.84 17.09 39.99 4.79
309 312 1.227321 TGGGACAACCGACAACGAC 60.227 57.895 0.00 0.00 44.64 4.34
321 324 0.686441 CACCTCTCCGGTATGGGACA 60.686 60.000 0.00 0.00 46.94 4.02
322 325 1.400530 CCACCTCTCCGGTATGGGAC 61.401 65.000 0.00 0.00 46.94 4.46
362 365 9.535878 TGTCAAAACCGCTTCTAATAAAATTTT 57.464 25.926 8.75 8.75 0.00 1.82
363 366 9.705290 ATGTCAAAACCGCTTCTAATAAAATTT 57.295 25.926 0.00 0.00 0.00 1.82
429 432 5.302568 TGTGCTCAAGAAGAATTGGTCAATT 59.697 36.000 8.48 8.48 43.14 2.32
430 433 4.828939 TGTGCTCAAGAAGAATTGGTCAAT 59.171 37.500 0.00 0.00 0.00 2.57
431 434 4.036734 GTGTGCTCAAGAAGAATTGGTCAA 59.963 41.667 0.00 0.00 0.00 3.18
453 456 8.561738 ACTGTCGGTTATGATAATTTCTTTGT 57.438 30.769 0.00 0.00 0.00 2.83
460 463 9.449719 AGAAAGAAACTGTCGGTTATGATAATT 57.550 29.630 0.00 0.00 37.12 1.40
513 516 8.192774 TGTAGTCAGTACTGGGTATTTATTTCG 58.807 37.037 22.48 0.00 36.36 3.46
687 690 6.574123 GCTCAGGCTTTGTGGTTTTACCAG 62.574 50.000 0.00 0.00 41.52 4.00
1062 1068 0.096454 GACGCGATAACAACCCAAGC 59.904 55.000 15.93 0.00 0.00 4.01
1081 1087 3.502920 ACAGAGCGAGATCAAAGTAACG 58.497 45.455 0.00 0.00 0.00 3.18
1114 1120 0.790993 AGACCCCCTAGAACCACAGA 59.209 55.000 0.00 0.00 0.00 3.41
1199 1205 3.433615 CCTTCGACAACCACAAGAATCTC 59.566 47.826 0.00 0.00 0.00 2.75
1206 1212 1.153329 ACGCCTTCGACAACCACAA 60.153 52.632 0.00 0.00 39.41 3.33
1225 1231 7.854534 TCGCACAAGAAGATATGACAAATATG 58.145 34.615 0.00 0.00 0.00 1.78
1235 1241 4.836825 CCCCATATCGCACAAGAAGATAT 58.163 43.478 0.00 0.00 37.89 1.63
1236 1242 3.557054 GCCCCATATCGCACAAGAAGATA 60.557 47.826 0.00 0.00 0.00 1.98
1238 1244 1.475034 GCCCCATATCGCACAAGAAGA 60.475 52.381 0.00 0.00 0.00 2.87
1239 1245 0.947244 GCCCCATATCGCACAAGAAG 59.053 55.000 0.00 0.00 0.00 2.85
1240 1246 0.546122 AGCCCCATATCGCACAAGAA 59.454 50.000 0.00 0.00 0.00 2.52
1241 1247 0.179048 CAGCCCCATATCGCACAAGA 60.179 55.000 0.00 0.00 0.00 3.02
1256 1264 3.422303 TGACACGCATTCGCAGCC 61.422 61.111 0.00 0.00 39.84 4.85
1257 1265 2.202222 GTGACACGCATTCGCAGC 60.202 61.111 0.00 0.00 39.84 5.25
1313 1321 5.917541 AAATGACCACTAACTTGTACGTG 57.082 39.130 0.00 0.00 0.00 4.49
1361 1369 7.312657 TCTAATTCATGAAGCAGTGAATCAC 57.687 36.000 14.54 5.02 42.52 3.06
1564 1579 7.800155 AAAACCAAACGAATTCCAATTCAAT 57.200 28.000 11.63 0.00 43.85 2.57
1565 1580 7.439655 CCTAAAACCAAACGAATTCCAATTCAA 59.560 33.333 11.63 0.00 43.85 2.69
1569 1584 5.789521 CCCTAAAACCAAACGAATTCCAAT 58.210 37.500 0.00 0.00 0.00 3.16
1575 1590 3.492337 TCTGCCCTAAAACCAAACGAAT 58.508 40.909 0.00 0.00 0.00 3.34
1611 1626 7.618137 TGGAAAGTTATGGAGTAGAACTTACC 58.382 38.462 0.78 0.00 46.91 2.85
1615 1630 6.380274 TCGATGGAAAGTTATGGAGTAGAACT 59.620 38.462 0.00 0.00 42.37 3.01
1619 1634 8.744652 AGATATCGATGGAAAGTTATGGAGTAG 58.255 37.037 8.54 0.00 0.00 2.57
1698 1713 4.256110 CACATCACAAGAGACATAAGGCA 58.744 43.478 0.00 0.00 0.00 4.75
1700 1715 4.511527 AGCACATCACAAGAGACATAAGG 58.488 43.478 0.00 0.00 0.00 2.69
1776 1792 6.423905 TGACCGCAATAAGTAGCATTTCTATC 59.576 38.462 0.00 0.00 0.00 2.08
1810 1826 4.871933 AAATTTGCAACTACCTTCCCTG 57.128 40.909 0.00 0.00 0.00 4.45
1833 1849 3.743911 ACATTGTGCTGTGCATGAAAATG 59.256 39.130 0.00 13.40 41.91 2.32
1894 1910 1.414919 TGGACGATGCATACCCCTAAC 59.585 52.381 0.00 0.00 0.00 2.34
2326 2381 0.529773 GCATACCGCCACTCGATTCA 60.530 55.000 0.00 0.00 41.67 2.57
2381 2436 8.127327 CACTCGATTCATCTAATTTGAAAGCAT 58.873 33.333 0.00 0.00 36.72 3.79
2382 2437 7.414429 CCACTCGATTCATCTAATTTGAAAGCA 60.414 37.037 0.00 0.00 36.72 3.91
2383 2438 6.909357 CCACTCGATTCATCTAATTTGAAAGC 59.091 38.462 0.00 0.00 36.72 3.51
2384 2439 6.909357 GCCACTCGATTCATCTAATTTGAAAG 59.091 38.462 0.00 0.00 36.72 2.62
2385 2440 6.456853 CGCCACTCGATTCATCTAATTTGAAA 60.457 38.462 0.00 0.00 41.67 2.69
2386 2441 5.006649 CGCCACTCGATTCATCTAATTTGAA 59.993 40.000 0.00 0.00 41.67 2.69
2387 2442 4.507756 CGCCACTCGATTCATCTAATTTGA 59.492 41.667 0.00 0.00 41.67 2.69
2388 2443 4.319046 CCGCCACTCGATTCATCTAATTTG 60.319 45.833 0.00 0.00 41.67 2.32
2389 2444 3.809832 CCGCCACTCGATTCATCTAATTT 59.190 43.478 0.00 0.00 41.67 1.82
2390 2445 3.181465 ACCGCCACTCGATTCATCTAATT 60.181 43.478 0.00 0.00 41.67 1.40
2391 2446 2.365617 ACCGCCACTCGATTCATCTAAT 59.634 45.455 0.00 0.00 41.67 1.73
2392 2447 1.754803 ACCGCCACTCGATTCATCTAA 59.245 47.619 0.00 0.00 41.67 2.10
2393 2448 1.399714 ACCGCCACTCGATTCATCTA 58.600 50.000 0.00 0.00 41.67 1.98
2394 2449 1.399714 TACCGCCACTCGATTCATCT 58.600 50.000 0.00 0.00 41.67 2.90
2395 2450 2.061773 CATACCGCCACTCGATTCATC 58.938 52.381 0.00 0.00 41.67 2.92
2396 2451 1.873903 GCATACCGCCACTCGATTCAT 60.874 52.381 0.00 0.00 41.67 2.57
2397 2452 0.529773 GCATACCGCCACTCGATTCA 60.530 55.000 0.00 0.00 41.67 2.57
2398 2453 0.249489 AGCATACCGCCACTCGATTC 60.249 55.000 0.00 0.00 44.04 2.52
2399 2454 0.178068 AAGCATACCGCCACTCGATT 59.822 50.000 0.00 0.00 44.04 3.34
2400 2455 0.178068 AAAGCATACCGCCACTCGAT 59.822 50.000 0.00 0.00 44.04 3.59
2401 2456 0.459585 GAAAGCATACCGCCACTCGA 60.460 55.000 0.00 0.00 44.04 4.04
2402 2457 0.739462 TGAAAGCATACCGCCACTCG 60.739 55.000 0.00 0.00 44.04 4.18
2403 2458 0.727398 GTGAAAGCATACCGCCACTC 59.273 55.000 0.00 0.00 44.04 3.51
2404 2459 0.036164 TGTGAAAGCATACCGCCACT 59.964 50.000 0.00 0.00 44.04 4.00
2405 2460 0.447801 CTGTGAAAGCATACCGCCAC 59.552 55.000 0.00 0.00 44.04 5.01
2406 2461 0.036164 ACTGTGAAAGCATACCGCCA 59.964 50.000 0.00 0.00 44.04 5.69
2407 2462 0.727398 GACTGTGAAAGCATACCGCC 59.273 55.000 0.00 0.00 44.04 6.13
2408 2463 1.661112 GAGACTGTGAAAGCATACCGC 59.339 52.381 0.00 0.00 42.91 5.68
2409 2464 2.926200 CAGAGACTGTGAAAGCATACCG 59.074 50.000 0.00 0.00 0.00 4.02
2410 2465 3.055819 TCCAGAGACTGTGAAAGCATACC 60.056 47.826 0.14 0.00 0.00 2.73
2411 2466 4.193826 TCCAGAGACTGTGAAAGCATAC 57.806 45.455 0.14 0.00 0.00 2.39
2412 2467 6.519382 CATATCCAGAGACTGTGAAAGCATA 58.481 40.000 0.14 0.00 0.00 3.14
2413 2468 3.996921 ATCCAGAGACTGTGAAAGCAT 57.003 42.857 0.14 0.00 0.00 3.79
2471 2527 7.452880 AAGCATTGCTCTGTTAATTTCAGTA 57.547 32.000 12.39 0.00 38.25 2.74
2480 2536 4.136796 ACTGTGAAAGCATTGCTCTGTTA 58.863 39.130 12.39 0.00 38.25 2.41
2481 2537 2.954318 ACTGTGAAAGCATTGCTCTGTT 59.046 40.909 12.39 2.39 38.25 3.16
2482 2538 2.579873 ACTGTGAAAGCATTGCTCTGT 58.420 42.857 12.39 6.69 38.25 3.41
2483 2539 4.634883 AGATACTGTGAAAGCATTGCTCTG 59.365 41.667 12.39 6.07 38.25 3.35
2484 2540 4.841422 AGATACTGTGAAAGCATTGCTCT 58.159 39.130 12.39 0.00 38.25 4.09
2485 2541 6.857777 ATAGATACTGTGAAAGCATTGCTC 57.142 37.500 12.39 0.96 38.25 4.26
2486 2542 7.636150 AAATAGATACTGTGAAAGCATTGCT 57.364 32.000 5.03 5.03 42.56 3.91
2487 2543 9.956720 AATAAATAGATACTGTGAAAGCATTGC 57.043 29.630 0.00 0.00 0.00 3.56
2767 2845 7.199766 TCAACAGATTAACCAATTTCACACAC 58.800 34.615 0.00 0.00 0.00 3.82
2876 2977 4.392138 GCGATATGAGGCCCTAAATACAAC 59.608 45.833 0.00 0.00 0.00 3.32
3161 3266 2.283145 ATGTTTGAGCTGGCAAGAGT 57.717 45.000 0.00 0.00 0.00 3.24
3171 3276 9.956720 ATAGAACTATGCAAATTATGTTTGAGC 57.043 29.630 8.95 0.00 0.00 4.26
3186 3291 6.708054 AGGTATGAGCAAACATAGAACTATGC 59.292 38.462 18.14 8.77 45.06 3.14
3259 3370 0.669318 TGATTCACAACGACGCCCTC 60.669 55.000 0.00 0.00 0.00 4.30
3356 5094 5.412594 GGATTATGCAGTTCTTTCTGACACA 59.587 40.000 0.00 0.00 37.61 3.72
3415 5155 8.972262 TCAAAGTCTGCTATATATGTTCGATC 57.028 34.615 0.00 0.00 0.00 3.69
3488 5232 4.556697 TGAAGGCTATACTGGAAGATGGA 58.443 43.478 0.00 0.00 37.43 3.41
3602 5346 0.044092 TGGGAGCCTGGATGGAAGTA 59.956 55.000 0.00 0.00 38.35 2.24
4062 5810 4.770874 GCTTGGCCCGCCGTAGAA 62.771 66.667 0.00 0.00 39.42 2.10
4168 5916 7.495934 GTGACCTAATCAAGCATGTATACAAGT 59.504 37.037 10.14 0.00 39.72 3.16
4309 6061 5.633830 AAGTCATGGTCACATTTCACATC 57.366 39.130 0.00 0.00 34.35 3.06
4432 6184 1.145571 AGAGGGTTTGGCACCTAACA 58.854 50.000 14.47 0.00 46.38 2.41
4589 6341 7.548673 GCAGTTAAAACTAAATGCTGTACAC 57.451 36.000 9.39 0.00 44.58 2.90
4653 6405 6.665992 AATACGCTTAGGTCCATCAGAATA 57.334 37.500 0.00 0.00 0.00 1.75
5126 6981 4.202430 ACCGAGGACTTGGTTAATTTGTCT 60.202 41.667 5.39 0.00 44.88 3.41
5245 7103 6.949352 ATCATAATCATTGTTCCACTCCAC 57.051 37.500 0.00 0.00 0.00 4.02
5286 7145 4.912187 GCTAAGCAAAAACAGCAGAGTAAC 59.088 41.667 0.00 0.00 34.13 2.50
5289 7148 3.217626 AGCTAAGCAAAAACAGCAGAGT 58.782 40.909 0.00 0.00 36.47 3.24
5433 7292 4.903638 TCTGAACGATGAAATTCACGAC 57.096 40.909 19.10 13.96 31.62 4.34
5448 7307 3.309954 GCCGTGGAAGTGATTATCTGAAC 59.690 47.826 0.00 0.00 0.00 3.18
5468 7327 4.997395 TGTTTCTTGAGATAACTCTGTGCC 59.003 41.667 1.39 0.00 42.99 5.01
5624 7499 4.037208 CCCAAATCAGTATCATGCAGGAAC 59.963 45.833 4.62 5.39 0.00 3.62
5636 7511 8.336235 ACCAGATTTAGAATTCCCAAATCAGTA 58.664 33.333 27.95 4.31 39.86 2.74
5682 7557 9.118300 GTATCAATGTGATTTCTTGGAGAAGAT 57.882 33.333 0.00 0.00 36.91 2.40
5684 7559 8.272545 TGTATCAATGTGATTTCTTGGAGAAG 57.727 34.615 0.00 0.00 38.26 2.85
5719 7595 4.380945 TGGCTTGATGGGGTGGGC 62.381 66.667 0.00 0.00 0.00 5.36
5724 7600 1.076559 TCATGCTGGCTTGATGGGG 60.077 57.895 7.00 0.00 0.00 4.96
5751 7627 5.073311 AGAATACAGACAGCGCTTCTTAA 57.927 39.130 7.50 5.27 0.00 1.85
5758 7634 0.917259 CACGAGAATACAGACAGCGC 59.083 55.000 0.00 0.00 0.00 5.92
5836 7715 2.126580 CGACGGACGGTGACTTCC 60.127 66.667 0.00 0.00 45.04 3.46
5868 7747 4.272748 GCACTAGTCGAACTTCCTGTTTTT 59.727 41.667 0.00 0.00 39.30 1.94
5869 7748 3.808174 GCACTAGTCGAACTTCCTGTTTT 59.192 43.478 0.00 0.00 39.30 2.43
5870 7749 3.391049 GCACTAGTCGAACTTCCTGTTT 58.609 45.455 0.00 0.00 39.30 2.83
5873 7752 1.618861 CGCACTAGTCGAACTTCCTG 58.381 55.000 8.47 0.00 0.00 3.86
5882 7761 1.693467 TTACACTTGCGCACTAGTCG 58.307 50.000 11.12 9.61 28.78 4.18
6213 8092 5.448632 GCTATGTACAAGGCCAACATTACAC 60.449 44.000 5.01 0.00 35.54 2.90
6214 8093 4.638421 GCTATGTACAAGGCCAACATTACA 59.362 41.667 5.01 5.33 35.54 2.41
6215 8094 4.638421 TGCTATGTACAAGGCCAACATTAC 59.362 41.667 5.01 5.69 35.54 1.89
6216 8095 4.849518 TGCTATGTACAAGGCCAACATTA 58.150 39.130 5.01 0.00 35.54 1.90
6217 8096 3.696045 TGCTATGTACAAGGCCAACATT 58.304 40.909 5.01 0.00 35.54 2.71
6218 8097 3.364460 TGCTATGTACAAGGCCAACAT 57.636 42.857 5.01 11.63 37.58 2.71
6219 8098 2.817258 GTTGCTATGTACAAGGCCAACA 59.183 45.455 5.01 3.87 0.00 3.33
6220 8099 2.163613 GGTTGCTATGTACAAGGCCAAC 59.836 50.000 5.01 16.94 0.00 3.77
6221 8100 2.224892 TGGTTGCTATGTACAAGGCCAA 60.225 45.455 5.01 8.57 0.00 4.52
6222 8101 1.352687 TGGTTGCTATGTACAAGGCCA 59.647 47.619 5.01 9.76 0.00 5.36
6223 8102 2.122783 TGGTTGCTATGTACAAGGCC 57.877 50.000 16.98 0.00 0.00 5.19
6224 8103 3.343617 TCTTGGTTGCTATGTACAAGGC 58.656 45.455 14.07 14.07 39.10 4.35
6225 8104 7.642669 CAATATCTTGGTTGCTATGTACAAGG 58.357 38.462 0.00 0.00 39.10 3.61
6226 8105 7.134815 GCAATATCTTGGTTGCTATGTACAAG 58.865 38.462 0.00 0.00 45.41 3.16
6227 8106 7.026631 GCAATATCTTGGTTGCTATGTACAA 57.973 36.000 0.00 0.00 45.41 2.41
6228 8107 6.618287 GCAATATCTTGGTTGCTATGTACA 57.382 37.500 0.00 0.00 45.41 2.90
6255 8134 8.711457 ACAAACTTAATGCTTATTGTGCAATTC 58.289 29.630 2.56 0.00 44.01 2.17
6314 8194 2.282407 TGACAGATCATGACCAATGCG 58.718 47.619 0.00 0.00 36.11 4.73
6456 8338 9.699703 ACTGAAGAGTAAAGAGAGTAAAATGAC 57.300 33.333 0.00 0.00 0.00 3.06
6467 8352 5.465935 GTGACCTCACTGAAGAGTAAAGAG 58.534 45.833 0.00 0.00 43.25 2.85
6489 8374 1.466025 TTACCTCGTCAGCCAACGGT 61.466 55.000 8.42 2.92 42.80 4.83
6511 8396 3.901797 CTGCACGGTTCCTCCCACC 62.902 68.421 0.00 0.00 0.00 4.61
6523 8408 0.378257 AAGCACAACAAGACTGCACG 59.622 50.000 0.00 0.00 33.06 5.34
6535 8420 1.134699 CGAGCCTCCAGATAAGCACAA 60.135 52.381 0.00 0.00 0.00 3.33
6537 8422 0.747255 TCGAGCCTCCAGATAAGCAC 59.253 55.000 0.00 0.00 0.00 4.40
6545 8430 2.219325 AAACTCGCTCGAGCCTCCAG 62.219 60.000 30.66 21.84 45.54 3.86
6550 8435 2.095252 GTCCAAACTCGCTCGAGCC 61.095 63.158 30.66 13.79 45.54 4.70
6551 8436 1.080434 AGTCCAAACTCGCTCGAGC 60.080 57.895 27.64 27.64 45.54 5.03
6552 8437 2.730626 CAGTCCAAACTCGCTCGAG 58.269 57.895 16.71 16.71 46.91 4.04
6553 8438 4.966005 CAGTCCAAACTCGCTCGA 57.034 55.556 0.00 0.00 31.71 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.