Multiple sequence alignment - TraesCS2D01G205100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G205100 chr2D 100.000 2952 0 0 1 2952 157020332 157017381 0.000000e+00 5452.0
1 TraesCS2D01G205100 chr2D 94.972 358 17 1 1 357 577795748 577796105 7.140000e-156 560.0
2 TraesCS2D01G205100 chr2A 86.498 1622 105 51 529 2104 166830565 166829012 0.000000e+00 1677.0
3 TraesCS2D01G205100 chr2A 95.887 778 25 5 2179 2952 166829013 166828239 0.000000e+00 1253.0
4 TraesCS2D01G205100 chr2A 91.429 175 6 3 364 529 166830701 166830527 6.360000e-57 231.0
5 TraesCS2D01G205100 chr2B 84.913 1319 89 47 848 2105 214535324 214534055 0.000000e+00 1232.0
6 TraesCS2D01G205100 chr2B 93.462 780 41 7 2182 2951 214534055 214533276 0.000000e+00 1149.0
7 TraesCS2D01G205100 chr2B 91.343 335 19 4 529 854 214535687 214535354 1.610000e-122 449.0
8 TraesCS2D01G205100 chr2B 93.567 171 6 1 364 529 214535823 214535653 1.760000e-62 250.0
9 TraesCS2D01G205100 chr5D 95.278 360 16 1 1 359 225855931 225855572 1.190000e-158 569.0
10 TraesCS2D01G205100 chr5D 94.986 359 17 1 1 358 395707550 395707192 1.990000e-156 562.0
11 TraesCS2D01G205100 chr1D 95.041 363 17 1 1 362 31038069 31038431 1.190000e-158 569.0
12 TraesCS2D01G205100 chr1D 94.780 364 17 2 1 363 365045336 365044974 1.540000e-157 566.0
13 TraesCS2D01G205100 chr6D 94.986 359 17 1 1 358 451921060 451921418 1.990000e-156 562.0
14 TraesCS2D01G205100 chr3D 94.986 359 17 1 1 358 234615440 234615082 1.990000e-156 562.0
15 TraesCS2D01G205100 chr7D 94.972 358 17 1 1 357 29162778 29163135 7.140000e-156 560.0
16 TraesCS2D01G205100 chr7D 94.751 362 16 2 1 361 33629649 33629290 7.140000e-156 560.0
17 TraesCS2D01G205100 chr7A 100.000 29 0 0 2112 2140 683484666 683484694 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G205100 chr2D 157017381 157020332 2951 True 5452.000000 5452 100.000000 1 2952 1 chr2D.!!$R1 2951
1 TraesCS2D01G205100 chr2A 166828239 166830701 2462 True 1053.666667 1677 91.271333 364 2952 3 chr2A.!!$R1 2588
2 TraesCS2D01G205100 chr2B 214533276 214535823 2547 True 770.000000 1232 90.821250 364 2951 4 chr2B.!!$R1 2587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.03601 CGGACATCTTCACCAAGCCT 60.036 55.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2260 0.178975 TTGCATTTTGGGACGGAGGT 60.179 50.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.220447 TCGTCAAACCCGATGTTCC 57.780 52.632 0.00 0.00 35.67 3.62
19 20 0.393448 TCGTCAAACCCGATGTTCCA 59.607 50.000 0.00 0.00 35.67 3.53
20 21 1.002659 TCGTCAAACCCGATGTTCCAT 59.997 47.619 0.00 0.00 35.67 3.41
21 22 1.130373 CGTCAAACCCGATGTTCCATG 59.870 52.381 0.00 0.00 35.67 3.66
22 23 1.135402 GTCAAACCCGATGTTCCATGC 60.135 52.381 0.00 0.00 35.67 4.06
23 24 0.887247 CAAACCCGATGTTCCATGCA 59.113 50.000 0.00 0.00 35.67 3.96
24 25 0.887933 AAACCCGATGTTCCATGCAC 59.112 50.000 0.00 0.00 35.67 4.57
25 26 1.305219 AACCCGATGTTCCATGCACG 61.305 55.000 0.00 0.00 28.45 5.34
26 27 2.472059 CCCGATGTTCCATGCACGG 61.472 63.158 0.00 0.00 40.03 4.94
27 28 1.449423 CCGATGTTCCATGCACGGA 60.449 57.895 0.00 0.00 42.40 4.69
28 29 1.705337 CCGATGTTCCATGCACGGAC 61.705 60.000 0.00 0.00 42.40 4.79
29 30 0.740868 CGATGTTCCATGCACGGACT 60.741 55.000 0.00 0.00 33.75 3.85
30 31 1.470805 CGATGTTCCATGCACGGACTA 60.471 52.381 0.00 0.00 33.75 2.59
31 32 2.627945 GATGTTCCATGCACGGACTAA 58.372 47.619 0.00 0.00 33.75 2.24
32 33 2.552599 TGTTCCATGCACGGACTAAA 57.447 45.000 0.00 0.00 33.75 1.85
33 34 2.147958 TGTTCCATGCACGGACTAAAC 58.852 47.619 0.00 0.00 33.75 2.01
34 35 2.147958 GTTCCATGCACGGACTAAACA 58.852 47.619 0.00 0.00 33.75 2.83
35 36 1.803334 TCCATGCACGGACTAAACAC 58.197 50.000 0.00 0.00 0.00 3.32
36 37 1.070914 TCCATGCACGGACTAAACACA 59.929 47.619 0.00 0.00 0.00 3.72
37 38 2.083774 CCATGCACGGACTAAACACAT 58.916 47.619 0.00 0.00 0.00 3.21
38 39 2.487762 CCATGCACGGACTAAACACATT 59.512 45.455 0.00 0.00 0.00 2.71
39 40 3.491356 CATGCACGGACTAAACACATTG 58.509 45.455 0.00 0.00 0.00 2.82
40 41 2.839975 TGCACGGACTAAACACATTGA 58.160 42.857 0.00 0.00 0.00 2.57
41 42 2.805671 TGCACGGACTAAACACATTGAG 59.194 45.455 0.00 0.00 0.00 3.02
42 43 3.064207 GCACGGACTAAACACATTGAGA 58.936 45.455 0.00 0.00 0.00 3.27
43 44 3.684788 GCACGGACTAAACACATTGAGAT 59.315 43.478 0.00 0.00 0.00 2.75
44 45 4.154195 GCACGGACTAAACACATTGAGATT 59.846 41.667 0.00 0.00 0.00 2.40
45 46 5.621422 CACGGACTAAACACATTGAGATTG 58.379 41.667 0.00 0.00 0.00 2.67
46 47 5.408299 CACGGACTAAACACATTGAGATTGA 59.592 40.000 0.00 0.00 0.00 2.57
47 48 5.408604 ACGGACTAAACACATTGAGATTGAC 59.591 40.000 0.00 0.00 0.00 3.18
48 49 5.639506 CGGACTAAACACATTGAGATTGACT 59.360 40.000 0.00 0.00 0.00 3.41
49 50 6.811665 CGGACTAAACACATTGAGATTGACTA 59.188 38.462 0.00 0.00 0.00 2.59
50 51 7.492669 CGGACTAAACACATTGAGATTGACTAT 59.507 37.037 0.00 0.00 0.00 2.12
51 52 8.821894 GGACTAAACACATTGAGATTGACTATC 58.178 37.037 0.00 0.00 0.00 2.08
52 53 9.371136 GACTAAACACATTGAGATTGACTATCA 57.629 33.333 0.00 0.00 35.59 2.15
53 54 9.896645 ACTAAACACATTGAGATTGACTATCAT 57.103 29.630 0.00 0.00 35.59 2.45
57 58 9.850628 AACACATTGAGATTGACTATCATTTTG 57.149 29.630 0.00 0.00 35.59 2.44
58 59 9.017509 ACACATTGAGATTGACTATCATTTTGT 57.982 29.630 0.00 0.00 35.59 2.83
59 60 9.285770 CACATTGAGATTGACTATCATTTTGTG 57.714 33.333 0.00 4.77 35.59 3.33
60 61 9.234827 ACATTGAGATTGACTATCATTTTGTGA 57.765 29.630 0.00 0.00 42.06 3.58
61 62 9.717892 CATTGAGATTGACTATCATTTTGTGAG 57.282 33.333 0.00 0.00 40.92 3.51
62 63 7.854557 TGAGATTGACTATCATTTTGTGAGG 57.145 36.000 0.00 0.00 40.92 3.86
63 64 6.825213 TGAGATTGACTATCATTTTGTGAGGG 59.175 38.462 0.00 0.00 40.92 4.30
64 65 6.962182 AGATTGACTATCATTTTGTGAGGGA 58.038 36.000 0.00 0.00 40.92 4.20
65 66 7.405292 AGATTGACTATCATTTTGTGAGGGAA 58.595 34.615 0.00 0.00 40.92 3.97
66 67 7.555554 AGATTGACTATCATTTTGTGAGGGAAG 59.444 37.037 0.00 0.00 40.92 3.46
67 68 5.500234 TGACTATCATTTTGTGAGGGAAGG 58.500 41.667 0.00 0.00 40.92 3.46
68 69 5.014123 TGACTATCATTTTGTGAGGGAAGGT 59.986 40.000 0.00 0.00 40.92 3.50
69 70 5.256474 ACTATCATTTTGTGAGGGAAGGTG 58.744 41.667 0.00 0.00 40.92 4.00
70 71 3.593442 TCATTTTGTGAGGGAAGGTGT 57.407 42.857 0.00 0.00 31.80 4.16
71 72 3.909732 TCATTTTGTGAGGGAAGGTGTT 58.090 40.909 0.00 0.00 31.80 3.32
72 73 3.636300 TCATTTTGTGAGGGAAGGTGTTG 59.364 43.478 0.00 0.00 31.80 3.33
73 74 1.398692 TTTGTGAGGGAAGGTGTTGC 58.601 50.000 0.00 0.00 0.00 4.17
74 75 0.257328 TTGTGAGGGAAGGTGTTGCA 59.743 50.000 0.00 0.00 0.00 4.08
75 76 0.465460 TGTGAGGGAAGGTGTTGCAC 60.465 55.000 0.00 0.00 0.00 4.57
76 77 0.465460 GTGAGGGAAGGTGTTGCACA 60.465 55.000 1.61 0.00 35.86 4.57
77 78 0.179020 TGAGGGAAGGTGTTGCACAG 60.179 55.000 1.61 0.00 35.86 3.66
78 79 0.108585 GAGGGAAGGTGTTGCACAGA 59.891 55.000 1.61 0.00 35.86 3.41
79 80 0.550914 AGGGAAGGTGTTGCACAGAA 59.449 50.000 1.61 0.00 35.86 3.02
80 81 0.954452 GGGAAGGTGTTGCACAGAAG 59.046 55.000 1.61 0.00 35.86 2.85
81 82 0.312102 GGAAGGTGTTGCACAGAAGC 59.688 55.000 1.61 0.00 35.86 3.86
82 83 1.312815 GAAGGTGTTGCACAGAAGCT 58.687 50.000 1.61 0.00 35.86 3.74
83 84 2.494059 GAAGGTGTTGCACAGAAGCTA 58.506 47.619 1.61 0.00 35.86 3.32
84 85 2.175878 AGGTGTTGCACAGAAGCTAG 57.824 50.000 1.61 0.00 35.86 3.42
85 86 1.417890 AGGTGTTGCACAGAAGCTAGT 59.582 47.619 1.61 0.00 35.86 2.57
86 87 2.632996 AGGTGTTGCACAGAAGCTAGTA 59.367 45.455 1.61 0.00 35.86 1.82
87 88 2.737252 GGTGTTGCACAGAAGCTAGTAC 59.263 50.000 1.61 0.00 35.86 2.73
88 89 3.390135 GTGTTGCACAGAAGCTAGTACA 58.610 45.455 0.00 0.00 34.08 2.90
89 90 3.807622 GTGTTGCACAGAAGCTAGTACAA 59.192 43.478 0.00 0.00 34.08 2.41
90 91 4.058124 TGTTGCACAGAAGCTAGTACAAG 58.942 43.478 0.00 0.00 34.99 3.16
91 92 4.058817 GTTGCACAGAAGCTAGTACAAGT 58.941 43.478 0.00 0.00 34.99 3.16
92 93 3.914312 TGCACAGAAGCTAGTACAAGTC 58.086 45.455 0.00 0.00 34.99 3.01
93 94 3.320826 TGCACAGAAGCTAGTACAAGTCA 59.679 43.478 0.00 0.00 34.99 3.41
94 95 3.923461 GCACAGAAGCTAGTACAAGTCAG 59.077 47.826 0.00 0.00 0.00 3.51
95 96 4.489810 CACAGAAGCTAGTACAAGTCAGG 58.510 47.826 0.00 0.00 0.00 3.86
96 97 4.021894 CACAGAAGCTAGTACAAGTCAGGT 60.022 45.833 0.00 0.00 0.00 4.00
97 98 4.589374 ACAGAAGCTAGTACAAGTCAGGTT 59.411 41.667 0.00 0.00 0.00 3.50
98 99 5.070580 ACAGAAGCTAGTACAAGTCAGGTTT 59.929 40.000 0.00 0.00 0.00 3.27
99 100 6.267014 ACAGAAGCTAGTACAAGTCAGGTTTA 59.733 38.462 0.00 0.00 0.00 2.01
100 101 7.038941 ACAGAAGCTAGTACAAGTCAGGTTTAT 60.039 37.037 0.00 0.00 0.00 1.40
101 102 7.489757 CAGAAGCTAGTACAAGTCAGGTTTATC 59.510 40.741 0.00 0.00 0.00 1.75
102 103 7.397761 AGAAGCTAGTACAAGTCAGGTTTATCT 59.602 37.037 0.00 0.00 0.00 1.98
103 104 7.102847 AGCTAGTACAAGTCAGGTTTATCTC 57.897 40.000 0.00 0.00 0.00 2.75
104 105 6.893005 AGCTAGTACAAGTCAGGTTTATCTCT 59.107 38.462 0.00 0.00 0.00 3.10
105 106 7.397761 AGCTAGTACAAGTCAGGTTTATCTCTT 59.602 37.037 0.00 0.00 0.00 2.85
106 107 7.703197 GCTAGTACAAGTCAGGTTTATCTCTTC 59.297 40.741 0.00 0.00 0.00 2.87
107 108 6.622549 AGTACAAGTCAGGTTTATCTCTTCG 58.377 40.000 0.00 0.00 0.00 3.79
108 109 5.723672 ACAAGTCAGGTTTATCTCTTCGA 57.276 39.130 0.00 0.00 0.00 3.71
109 110 6.097915 ACAAGTCAGGTTTATCTCTTCGAA 57.902 37.500 0.00 0.00 0.00 3.71
110 111 6.522054 ACAAGTCAGGTTTATCTCTTCGAAA 58.478 36.000 0.00 0.00 0.00 3.46
111 112 6.647067 ACAAGTCAGGTTTATCTCTTCGAAAG 59.353 38.462 0.00 0.18 0.00 2.62
112 113 6.591750 AGTCAGGTTTATCTCTTCGAAAGA 57.408 37.500 0.00 5.95 39.20 2.52
113 114 7.176589 AGTCAGGTTTATCTCTTCGAAAGAT 57.823 36.000 19.60 19.60 41.60 2.40
114 115 7.262048 AGTCAGGTTTATCTCTTCGAAAGATC 58.738 38.462 19.39 10.33 41.60 2.75
115 116 7.036220 GTCAGGTTTATCTCTTCGAAAGATCA 58.964 38.462 19.39 10.94 41.60 2.92
116 117 7.545965 GTCAGGTTTATCTCTTCGAAAGATCAA 59.454 37.037 19.39 14.66 41.60 2.57
117 118 7.545965 TCAGGTTTATCTCTTCGAAAGATCAAC 59.454 37.037 22.59 22.59 41.60 3.18
118 119 7.547370 CAGGTTTATCTCTTCGAAAGATCAACT 59.453 37.037 25.61 18.77 37.45 3.16
119 120 8.097662 AGGTTTATCTCTTCGAAAGATCAACTT 58.902 33.333 25.61 21.41 37.45 2.66
120 121 8.171840 GGTTTATCTCTTCGAAAGATCAACTTG 58.828 37.037 25.61 7.12 37.45 3.16
121 122 5.793026 ATCTCTTCGAAAGATCAACTTGC 57.207 39.130 13.63 0.00 41.60 4.01
128 129 4.008539 GAAAGATCAACTTGCGGACATC 57.991 45.455 0.00 0.00 38.98 3.06
129 130 3.340814 AAGATCAACTTGCGGACATCT 57.659 42.857 0.00 0.00 37.45 2.90
130 131 3.340814 AGATCAACTTGCGGACATCTT 57.659 42.857 0.00 0.00 0.00 2.40
131 132 3.265791 AGATCAACTTGCGGACATCTTC 58.734 45.455 0.00 0.00 0.00 2.87
132 133 2.542020 TCAACTTGCGGACATCTTCA 57.458 45.000 0.00 0.00 0.00 3.02
133 134 2.143122 TCAACTTGCGGACATCTTCAC 58.857 47.619 0.00 0.00 0.00 3.18
134 135 1.197721 CAACTTGCGGACATCTTCACC 59.802 52.381 0.00 0.00 0.00 4.02
135 136 0.396435 ACTTGCGGACATCTTCACCA 59.604 50.000 0.00 0.00 0.00 4.17
136 137 1.202758 ACTTGCGGACATCTTCACCAA 60.203 47.619 0.00 0.00 0.00 3.67
137 138 1.466167 CTTGCGGACATCTTCACCAAG 59.534 52.381 0.00 0.00 31.51 3.61
138 139 0.955428 TGCGGACATCTTCACCAAGC 60.955 55.000 0.00 0.00 0.00 4.01
139 140 1.648467 GCGGACATCTTCACCAAGCC 61.648 60.000 0.00 0.00 0.00 4.35
140 141 0.036010 CGGACATCTTCACCAAGCCT 60.036 55.000 0.00 0.00 0.00 4.58
141 142 1.743996 GGACATCTTCACCAAGCCTC 58.256 55.000 0.00 0.00 0.00 4.70
142 143 1.280421 GGACATCTTCACCAAGCCTCT 59.720 52.381 0.00 0.00 0.00 3.69
143 144 2.501723 GGACATCTTCACCAAGCCTCTA 59.498 50.000 0.00 0.00 0.00 2.43
144 145 3.526534 GACATCTTCACCAAGCCTCTAC 58.473 50.000 0.00 0.00 0.00 2.59
145 146 2.237392 ACATCTTCACCAAGCCTCTACC 59.763 50.000 0.00 0.00 0.00 3.18
146 147 2.327325 TCTTCACCAAGCCTCTACCT 57.673 50.000 0.00 0.00 0.00 3.08
147 148 2.621070 TCTTCACCAAGCCTCTACCTT 58.379 47.619 0.00 0.00 0.00 3.50
148 149 2.567615 TCTTCACCAAGCCTCTACCTTC 59.432 50.000 0.00 0.00 0.00 3.46
149 150 2.327325 TCACCAAGCCTCTACCTTCT 57.673 50.000 0.00 0.00 0.00 2.85
150 151 2.180276 TCACCAAGCCTCTACCTTCTC 58.820 52.381 0.00 0.00 0.00 2.87
151 152 1.208293 CACCAAGCCTCTACCTTCTCC 59.792 57.143 0.00 0.00 0.00 3.71
152 153 0.833949 CCAAGCCTCTACCTTCTCCC 59.166 60.000 0.00 0.00 0.00 4.30
153 154 1.573108 CAAGCCTCTACCTTCTCCCA 58.427 55.000 0.00 0.00 0.00 4.37
154 155 2.122768 CAAGCCTCTACCTTCTCCCAT 58.877 52.381 0.00 0.00 0.00 4.00
155 156 1.799933 AGCCTCTACCTTCTCCCATG 58.200 55.000 0.00 0.00 0.00 3.66
156 157 1.008938 AGCCTCTACCTTCTCCCATGT 59.991 52.381 0.00 0.00 0.00 3.21
157 158 1.840635 GCCTCTACCTTCTCCCATGTT 59.159 52.381 0.00 0.00 0.00 2.71
158 159 2.239907 GCCTCTACCTTCTCCCATGTTT 59.760 50.000 0.00 0.00 0.00 2.83
159 160 3.878778 CCTCTACCTTCTCCCATGTTTG 58.121 50.000 0.00 0.00 0.00 2.93
160 161 3.519510 CCTCTACCTTCTCCCATGTTTGA 59.480 47.826 0.00 0.00 0.00 2.69
161 162 4.383552 CCTCTACCTTCTCCCATGTTTGAG 60.384 50.000 0.00 0.00 0.00 3.02
162 163 2.887151 ACCTTCTCCCATGTTTGAGG 57.113 50.000 0.00 0.00 0.00 3.86
163 164 2.065799 ACCTTCTCCCATGTTTGAGGT 58.934 47.619 0.00 0.00 0.00 3.85
164 165 2.040412 ACCTTCTCCCATGTTTGAGGTC 59.960 50.000 0.00 0.00 0.00 3.85
165 166 2.307098 CCTTCTCCCATGTTTGAGGTCT 59.693 50.000 0.00 0.00 0.00 3.85
166 167 3.341823 CTTCTCCCATGTTTGAGGTCTG 58.658 50.000 0.00 0.00 0.00 3.51
167 168 2.338809 TCTCCCATGTTTGAGGTCTGT 58.661 47.619 0.00 0.00 0.00 3.41
168 169 3.516586 TCTCCCATGTTTGAGGTCTGTA 58.483 45.455 0.00 0.00 0.00 2.74
169 170 3.515502 TCTCCCATGTTTGAGGTCTGTAG 59.484 47.826 0.00 0.00 0.00 2.74
170 171 2.571653 TCCCATGTTTGAGGTCTGTAGG 59.428 50.000 0.00 0.00 0.00 3.18
171 172 2.359900 CCATGTTTGAGGTCTGTAGGC 58.640 52.381 0.00 0.00 0.00 3.93
172 173 2.002586 CATGTTTGAGGTCTGTAGGCG 58.997 52.381 0.00 0.00 0.00 5.52
173 174 0.320421 TGTTTGAGGTCTGTAGGCGC 60.320 55.000 0.00 0.00 0.00 6.53
174 175 0.320421 GTTTGAGGTCTGTAGGCGCA 60.320 55.000 10.83 0.00 0.00 6.09
175 176 0.394938 TTTGAGGTCTGTAGGCGCAA 59.605 50.000 10.83 0.00 0.00 4.85
176 177 0.613260 TTGAGGTCTGTAGGCGCAAT 59.387 50.000 10.83 0.00 0.00 3.56
177 178 0.175760 TGAGGTCTGTAGGCGCAATC 59.824 55.000 10.83 0.00 0.00 2.67
178 179 0.461961 GAGGTCTGTAGGCGCAATCT 59.538 55.000 10.83 0.00 0.00 2.40
179 180 0.461961 AGGTCTGTAGGCGCAATCTC 59.538 55.000 10.83 0.00 0.00 2.75
180 181 0.175760 GGTCTGTAGGCGCAATCTCA 59.824 55.000 10.83 0.00 0.00 3.27
181 182 1.405526 GGTCTGTAGGCGCAATCTCAA 60.406 52.381 10.83 0.00 0.00 3.02
182 183 1.661112 GTCTGTAGGCGCAATCTCAAC 59.339 52.381 10.83 0.00 0.00 3.18
183 184 1.009829 CTGTAGGCGCAATCTCAACC 58.990 55.000 10.83 0.00 0.00 3.77
184 185 0.613260 TGTAGGCGCAATCTCAACCT 59.387 50.000 10.83 0.00 34.42 3.50
185 186 1.291132 GTAGGCGCAATCTCAACCTC 58.709 55.000 10.83 0.00 31.79 3.85
186 187 0.178068 TAGGCGCAATCTCAACCTCC 59.822 55.000 10.83 0.00 31.79 4.30
187 188 1.078143 GGCGCAATCTCAACCTCCT 60.078 57.895 10.83 0.00 0.00 3.69
188 189 0.178068 GGCGCAATCTCAACCTCCTA 59.822 55.000 10.83 0.00 0.00 2.94
189 190 1.576356 GCGCAATCTCAACCTCCTAG 58.424 55.000 0.30 0.00 0.00 3.02
190 191 1.137086 GCGCAATCTCAACCTCCTAGA 59.863 52.381 0.30 0.00 0.00 2.43
191 192 2.224161 GCGCAATCTCAACCTCCTAGAT 60.224 50.000 0.30 0.00 0.00 1.98
192 193 3.005897 GCGCAATCTCAACCTCCTAGATA 59.994 47.826 0.30 0.00 29.89 1.98
193 194 4.551388 CGCAATCTCAACCTCCTAGATAC 58.449 47.826 0.00 0.00 29.89 2.24
194 195 4.279671 CGCAATCTCAACCTCCTAGATACT 59.720 45.833 0.00 0.00 29.89 2.12
195 196 5.221342 CGCAATCTCAACCTCCTAGATACTT 60.221 44.000 0.00 0.00 29.89 2.24
196 197 6.220201 GCAATCTCAACCTCCTAGATACTTC 58.780 44.000 0.00 0.00 29.89 3.01
197 198 6.183360 GCAATCTCAACCTCCTAGATACTTCA 60.183 42.308 0.00 0.00 29.89 3.02
198 199 7.432869 CAATCTCAACCTCCTAGATACTTCAG 58.567 42.308 0.00 0.00 29.89 3.02
199 200 5.450453 TCTCAACCTCCTAGATACTTCAGG 58.550 45.833 0.00 0.00 0.00 3.86
200 201 3.961408 TCAACCTCCTAGATACTTCAGGC 59.039 47.826 0.00 0.00 0.00 4.85
201 202 2.588620 ACCTCCTAGATACTTCAGGCG 58.411 52.381 0.00 0.00 0.00 5.52
202 203 2.091775 ACCTCCTAGATACTTCAGGCGT 60.092 50.000 0.00 0.00 0.00 5.68
203 204 2.294791 CCTCCTAGATACTTCAGGCGTG 59.705 54.545 0.00 0.00 0.00 5.34
204 205 3.215151 CTCCTAGATACTTCAGGCGTGA 58.785 50.000 4.68 4.68 0.00 4.35
205 206 3.215151 TCCTAGATACTTCAGGCGTGAG 58.785 50.000 9.34 6.74 32.98 3.51
206 207 2.952978 CCTAGATACTTCAGGCGTGAGT 59.047 50.000 9.34 11.83 32.98 3.41
207 208 3.381908 CCTAGATACTTCAGGCGTGAGTT 59.618 47.826 9.34 3.37 32.98 3.01
208 209 3.238108 AGATACTTCAGGCGTGAGTTG 57.762 47.619 9.34 6.86 32.98 3.16
209 210 2.826128 AGATACTTCAGGCGTGAGTTGA 59.174 45.455 9.34 0.00 32.98 3.18
210 211 2.724977 TACTTCAGGCGTGAGTTGAG 57.275 50.000 9.34 6.73 32.98 3.02
211 212 1.040646 ACTTCAGGCGTGAGTTGAGA 58.959 50.000 9.34 0.00 32.98 3.27
212 213 1.620819 ACTTCAGGCGTGAGTTGAGAT 59.379 47.619 9.34 0.00 32.98 2.75
213 214 2.037772 ACTTCAGGCGTGAGTTGAGATT 59.962 45.455 9.34 0.00 32.98 2.40
214 215 2.084610 TCAGGCGTGAGTTGAGATTG 57.915 50.000 4.68 0.00 0.00 2.67
215 216 1.618343 TCAGGCGTGAGTTGAGATTGA 59.382 47.619 4.68 0.00 0.00 2.57
216 217 1.998315 CAGGCGTGAGTTGAGATTGAG 59.002 52.381 0.00 0.00 0.00 3.02
217 218 1.066573 AGGCGTGAGTTGAGATTGAGG 60.067 52.381 0.00 0.00 0.00 3.86
218 219 1.363744 GCGTGAGTTGAGATTGAGGG 58.636 55.000 0.00 0.00 0.00 4.30
219 220 1.066858 GCGTGAGTTGAGATTGAGGGA 60.067 52.381 0.00 0.00 0.00 4.20
220 221 2.886081 CGTGAGTTGAGATTGAGGGAG 58.114 52.381 0.00 0.00 0.00 4.30
221 222 2.417924 CGTGAGTTGAGATTGAGGGAGG 60.418 54.545 0.00 0.00 0.00 4.30
222 223 2.093235 GTGAGTTGAGATTGAGGGAGGG 60.093 54.545 0.00 0.00 0.00 4.30
223 224 2.192263 GAGTTGAGATTGAGGGAGGGT 58.808 52.381 0.00 0.00 0.00 4.34
224 225 1.912043 AGTTGAGATTGAGGGAGGGTG 59.088 52.381 0.00 0.00 0.00 4.61
225 226 1.630878 GTTGAGATTGAGGGAGGGTGT 59.369 52.381 0.00 0.00 0.00 4.16
226 227 2.040412 GTTGAGATTGAGGGAGGGTGTT 59.960 50.000 0.00 0.00 0.00 3.32
227 228 3.199442 TGAGATTGAGGGAGGGTGTTA 57.801 47.619 0.00 0.00 0.00 2.41
228 229 3.526899 TGAGATTGAGGGAGGGTGTTAA 58.473 45.455 0.00 0.00 0.00 2.01
229 230 3.913799 TGAGATTGAGGGAGGGTGTTAAA 59.086 43.478 0.00 0.00 0.00 1.52
230 231 4.262617 GAGATTGAGGGAGGGTGTTAAAC 58.737 47.826 0.00 0.00 0.00 2.01
231 232 3.916989 AGATTGAGGGAGGGTGTTAAACT 59.083 43.478 0.00 0.00 0.00 2.66
232 233 4.354087 AGATTGAGGGAGGGTGTTAAACTT 59.646 41.667 0.00 0.00 0.00 2.66
233 234 3.782656 TGAGGGAGGGTGTTAAACTTC 57.217 47.619 0.00 0.00 0.00 3.01
234 235 2.038033 TGAGGGAGGGTGTTAAACTTCG 59.962 50.000 0.00 0.00 0.00 3.79
235 236 2.038164 GAGGGAGGGTGTTAAACTTCGT 59.962 50.000 0.00 0.00 0.00 3.85
236 237 3.242011 AGGGAGGGTGTTAAACTTCGTA 58.758 45.455 0.00 0.00 0.00 3.43
237 238 3.842436 AGGGAGGGTGTTAAACTTCGTAT 59.158 43.478 0.00 0.00 0.00 3.06
238 239 4.287845 AGGGAGGGTGTTAAACTTCGTATT 59.712 41.667 0.00 0.00 0.00 1.89
239 240 4.393990 GGGAGGGTGTTAAACTTCGTATTG 59.606 45.833 0.00 0.00 0.00 1.90
240 241 4.999311 GGAGGGTGTTAAACTTCGTATTGT 59.001 41.667 0.00 0.00 0.00 2.71
241 242 6.165577 GGAGGGTGTTAAACTTCGTATTGTA 58.834 40.000 0.00 0.00 0.00 2.41
242 243 6.312180 GGAGGGTGTTAAACTTCGTATTGTAG 59.688 42.308 0.00 0.00 0.00 2.74
243 244 5.640783 AGGGTGTTAAACTTCGTATTGTAGC 59.359 40.000 0.00 0.00 0.00 3.58
244 245 5.163824 GGGTGTTAAACTTCGTATTGTAGCC 60.164 44.000 0.00 0.00 0.00 3.93
245 246 5.163824 GGTGTTAAACTTCGTATTGTAGCCC 60.164 44.000 0.00 0.00 0.00 5.19
246 247 5.640783 GTGTTAAACTTCGTATTGTAGCCCT 59.359 40.000 0.00 0.00 0.00 5.19
247 248 6.813152 GTGTTAAACTTCGTATTGTAGCCCTA 59.187 38.462 0.00 0.00 0.00 3.53
248 249 7.493645 GTGTTAAACTTCGTATTGTAGCCCTAT 59.506 37.037 0.00 0.00 0.00 2.57
249 250 8.042515 TGTTAAACTTCGTATTGTAGCCCTATT 58.957 33.333 0.00 0.00 0.00 1.73
250 251 6.920569 AAACTTCGTATTGTAGCCCTATTG 57.079 37.500 0.00 0.00 0.00 1.90
251 252 5.609533 ACTTCGTATTGTAGCCCTATTGT 57.390 39.130 0.00 0.00 0.00 2.71
252 253 5.357257 ACTTCGTATTGTAGCCCTATTGTG 58.643 41.667 0.00 0.00 0.00 3.33
253 254 5.105064 ACTTCGTATTGTAGCCCTATTGTGT 60.105 40.000 0.00 0.00 0.00 3.72
254 255 6.097270 ACTTCGTATTGTAGCCCTATTGTGTA 59.903 38.462 0.00 0.00 0.00 2.90
255 256 6.468333 TCGTATTGTAGCCCTATTGTGTAA 57.532 37.500 0.00 0.00 0.00 2.41
256 257 6.876155 TCGTATTGTAGCCCTATTGTGTAAA 58.124 36.000 0.00 0.00 0.00 2.01
257 258 7.502696 TCGTATTGTAGCCCTATTGTGTAAAT 58.497 34.615 0.00 0.00 0.00 1.40
258 259 7.654520 TCGTATTGTAGCCCTATTGTGTAAATC 59.345 37.037 0.00 0.00 0.00 2.17
259 260 7.439955 CGTATTGTAGCCCTATTGTGTAAATCA 59.560 37.037 0.00 0.00 0.00 2.57
260 261 9.284968 GTATTGTAGCCCTATTGTGTAAATCAT 57.715 33.333 0.00 0.00 0.00 2.45
263 264 9.502091 TTGTAGCCCTATTGTGTAAATCATATC 57.498 33.333 0.00 0.00 0.00 1.63
264 265 8.880244 TGTAGCCCTATTGTGTAAATCATATCT 58.120 33.333 0.00 0.00 0.00 1.98
265 266 9.726438 GTAGCCCTATTGTGTAAATCATATCTT 57.274 33.333 0.00 0.00 0.00 2.40
282 283 9.857656 ATCATATCTTATTGATGTTGGACTTGT 57.142 29.630 0.00 0.00 36.65 3.16
287 288 8.492673 TCTTATTGATGTTGGACTTGTATGTC 57.507 34.615 0.00 0.00 36.31 3.06
288 289 8.100164 TCTTATTGATGTTGGACTTGTATGTCA 58.900 33.333 0.00 0.00 38.61 3.58
289 290 8.806429 TTATTGATGTTGGACTTGTATGTCAT 57.194 30.769 0.00 0.00 38.61 3.06
290 291 6.741992 TTGATGTTGGACTTGTATGTCATC 57.258 37.500 0.00 0.00 38.61 2.92
291 292 5.803552 TGATGTTGGACTTGTATGTCATCA 58.196 37.500 0.00 0.00 38.61 3.07
292 293 6.417258 TGATGTTGGACTTGTATGTCATCAT 58.583 36.000 0.00 0.00 38.61 2.45
293 294 6.885918 TGATGTTGGACTTGTATGTCATCATT 59.114 34.615 0.00 0.00 38.61 2.57
294 295 8.046107 TGATGTTGGACTTGTATGTCATCATTA 58.954 33.333 0.00 0.00 38.61 1.90
295 296 8.985315 ATGTTGGACTTGTATGTCATCATTAT 57.015 30.769 0.00 0.00 38.61 1.28
321 322 8.685257 ATATATGTGATAGGTCATCCCTTTGA 57.315 34.615 0.00 0.00 42.73 2.69
322 323 4.760530 TGTGATAGGTCATCCCTTTGAG 57.239 45.455 0.00 0.00 42.73 3.02
323 324 3.455910 TGTGATAGGTCATCCCTTTGAGG 59.544 47.826 0.00 0.00 42.73 3.86
334 335 2.586648 CCTTTGAGGGTTAAGCCAGT 57.413 50.000 24.95 5.78 39.65 4.00
335 336 2.876581 CCTTTGAGGGTTAAGCCAGTT 58.123 47.619 24.95 5.00 39.65 3.16
336 337 2.820197 CCTTTGAGGGTTAAGCCAGTTC 59.180 50.000 24.95 14.37 39.65 3.01
337 338 2.579410 TTGAGGGTTAAGCCAGTTCC 57.421 50.000 24.95 9.23 39.65 3.62
338 339 1.742308 TGAGGGTTAAGCCAGTTCCT 58.258 50.000 24.95 3.43 39.65 3.36
339 340 1.628846 TGAGGGTTAAGCCAGTTCCTC 59.371 52.381 24.95 13.00 40.68 3.71
340 341 1.628846 GAGGGTTAAGCCAGTTCCTCA 59.371 52.381 24.95 0.00 40.18 3.86
341 342 2.039879 GAGGGTTAAGCCAGTTCCTCAA 59.960 50.000 24.95 0.00 40.18 3.02
342 343 2.445525 AGGGTTAAGCCAGTTCCTCAAA 59.554 45.455 24.95 0.00 39.65 2.69
343 344 3.117284 AGGGTTAAGCCAGTTCCTCAAAA 60.117 43.478 24.95 0.00 39.65 2.44
344 345 3.005472 GGGTTAAGCCAGTTCCTCAAAAC 59.995 47.826 18.84 0.00 39.65 2.43
345 346 3.005472 GGTTAAGCCAGTTCCTCAAAACC 59.995 47.826 0.00 0.00 37.17 3.27
346 347 2.755952 AAGCCAGTTCCTCAAAACCT 57.244 45.000 0.00 0.00 0.00 3.50
347 348 3.876309 AAGCCAGTTCCTCAAAACCTA 57.124 42.857 0.00 0.00 0.00 3.08
348 349 3.141767 AGCCAGTTCCTCAAAACCTAC 57.858 47.619 0.00 0.00 0.00 3.18
349 350 1.804748 GCCAGTTCCTCAAAACCTACG 59.195 52.381 0.00 0.00 0.00 3.51
350 351 2.809299 GCCAGTTCCTCAAAACCTACGT 60.809 50.000 0.00 0.00 0.00 3.57
351 352 3.473625 CCAGTTCCTCAAAACCTACGTT 58.526 45.455 0.00 0.00 0.00 3.99
352 353 3.881089 CCAGTTCCTCAAAACCTACGTTT 59.119 43.478 0.00 0.00 44.20 3.60
373 374 0.250166 ACACCTACCAAACGAGCCAC 60.250 55.000 0.00 0.00 0.00 5.01
395 401 1.896660 GCCTTCTGCCACGGACAAA 60.897 57.895 0.00 0.00 0.00 2.83
462 468 3.329231 CGGCAACAAGACGCTGAA 58.671 55.556 0.00 0.00 45.03 3.02
513 519 2.100631 CCCGATTGTCACCGAGTGC 61.101 63.158 0.00 0.00 32.98 4.40
514 520 2.444624 CCGATTGTCACCGAGTGCG 61.445 63.158 0.00 0.00 32.98 5.34
517 523 2.227968 GATTGTCACCGAGTGCGTGC 62.228 60.000 0.00 0.00 32.98 5.34
519 525 4.994201 GTCACCGAGTGCGTGCGA 62.994 66.667 0.00 0.00 32.98 5.10
520 526 4.700365 TCACCGAGTGCGTGCGAG 62.700 66.667 0.00 0.00 32.98 5.03
525 531 3.857854 GAGTGCGTGCGAGGCATG 61.858 66.667 5.48 5.48 46.98 4.06
534 540 4.552365 CGAGGCATGCCACCCGAT 62.552 66.667 37.18 16.94 38.92 4.18
535 541 2.124151 GAGGCATGCCACCCGATT 60.124 61.111 37.18 16.13 38.92 3.34
536 542 2.440796 AGGCATGCCACCCGATTG 60.441 61.111 37.18 0.00 38.92 2.67
537 543 2.755469 GGCATGCCACCCGATTGT 60.755 61.111 32.08 0.00 35.81 2.71
538 544 2.774799 GGCATGCCACCCGATTGTC 61.775 63.158 32.08 0.00 35.81 3.18
539 545 2.045708 GCATGCCACCCGATTGTCA 61.046 57.895 6.36 0.00 0.00 3.58
540 546 1.802636 CATGCCACCCGATTGTCAC 59.197 57.895 0.00 0.00 0.00 3.67
541 547 1.378514 ATGCCACCCGATTGTCACC 60.379 57.895 0.00 0.00 0.00 4.02
542 548 3.124921 GCCACCCGATTGTCACCG 61.125 66.667 0.00 0.00 0.00 4.94
543 549 2.660206 CCACCCGATTGTCACCGA 59.340 61.111 0.00 0.00 0.00 4.69
544 550 1.447838 CCACCCGATTGTCACCGAG 60.448 63.158 0.00 0.00 0.00 4.63
545 551 1.292223 CACCCGATTGTCACCGAGT 59.708 57.895 0.00 0.00 0.00 4.18
546 552 1.014044 CACCCGATTGTCACCGAGTG 61.014 60.000 0.00 0.00 34.45 3.51
547 553 2.100631 CCCGATTGTCACCGAGTGC 61.101 63.158 0.00 0.00 32.98 4.40
548 554 2.444624 CCGATTGTCACCGAGTGCG 61.445 63.158 0.00 0.00 32.98 5.34
554 560 4.050934 TCACCGAGTGCGTGCGAT 62.051 61.111 0.00 0.00 32.98 4.58
583 593 3.717400 TCTCTGCCATGATCGTTACTC 57.283 47.619 0.00 0.00 0.00 2.59
689 699 5.163301 TGGCCTGATAAGATTGTTCCTAGAC 60.163 44.000 3.32 0.00 0.00 2.59
757 770 1.450848 GCTCCTGCTGCTGTGCATA 60.451 57.895 0.00 0.00 42.48 3.14
778 791 2.250741 TTTCATGGCGATCGGGAGCA 62.251 55.000 18.30 0.00 34.54 4.26
808 821 1.797537 GCTGATTGCAACGCGAACC 60.798 57.895 15.93 0.00 42.31 3.62
834 847 2.889617 CACATGCATGCCCCACTG 59.110 61.111 26.53 12.18 0.00 3.66
846 916 2.352805 CCACTGCCCCAAGAGGAC 59.647 66.667 0.00 0.00 38.24 3.85
847 917 2.046892 CACTGCCCCAAGAGGACG 60.047 66.667 0.00 0.00 38.24 4.79
848 918 2.526873 ACTGCCCCAAGAGGACGT 60.527 61.111 0.00 0.00 38.24 4.34
849 919 2.046892 CTGCCCCAAGAGGACGTG 60.047 66.667 0.00 0.00 38.24 4.49
850 920 2.847234 TGCCCCAAGAGGACGTGT 60.847 61.111 0.00 0.00 38.24 4.49
851 921 2.358737 GCCCCAAGAGGACGTGTG 60.359 66.667 0.00 0.00 38.24 3.82
852 922 3.148084 CCCCAAGAGGACGTGTGT 58.852 61.111 0.00 0.00 38.24 3.72
853 923 1.301716 CCCCAAGAGGACGTGTGTG 60.302 63.158 0.00 0.00 38.24 3.82
854 924 1.961277 CCCAAGAGGACGTGTGTGC 60.961 63.158 0.00 0.00 38.24 4.57
855 925 2.310233 CCAAGAGGACGTGTGTGCG 61.310 63.158 0.00 0.00 42.00 5.34
856 926 2.661866 AAGAGGACGTGTGTGCGC 60.662 61.111 0.00 0.00 42.00 6.09
898 968 1.451504 CACCAGGTTGCTCCAGTCA 59.548 57.895 0.00 0.00 39.02 3.41
899 969 0.604780 CACCAGGTTGCTCCAGTCAG 60.605 60.000 0.00 0.00 39.02 3.51
900 970 1.056700 ACCAGGTTGCTCCAGTCAGT 61.057 55.000 0.00 0.00 39.02 3.41
901 971 0.604780 CCAGGTTGCTCCAGTCAGTG 60.605 60.000 1.79 0.00 39.02 3.66
905 975 0.308993 GTTGCTCCAGTCAGTGTTGC 59.691 55.000 0.00 0.00 0.00 4.17
920 991 2.095372 GTGTTGCTCGTGCCTATAAACC 59.905 50.000 7.05 0.00 38.71 3.27
983 1054 2.178521 GATCACACGGCTCGTCGT 59.821 61.111 0.00 0.00 44.91 4.34
1019 1090 2.038837 TGTCGTCGTCGGCATCTCT 61.039 57.895 5.00 0.00 46.84 3.10
1144 1219 4.785767 TGTGCAGGAGCTCACTTG 57.214 55.556 17.19 11.54 39.15 3.16
1148 1223 1.739562 GCAGGAGCTCACTTGGACG 60.740 63.158 17.19 0.00 37.91 4.79
1174 1249 2.417936 TGCGTACGTGCAGGTGAA 59.582 55.556 21.78 0.00 40.62 3.18
1208 1283 1.372087 GCCTTCTCAAGATGGTGGCG 61.372 60.000 12.14 0.00 40.40 5.69
1265 1346 3.256960 GTGGCTTCTCCCCCACCA 61.257 66.667 0.00 0.00 44.48 4.17
1330 1414 1.412079 ACCAAGTTGCTTTGCATGGA 58.588 45.000 15.00 0.00 38.16 3.41
1337 1421 3.119245 AGTTGCTTTGCATGGACATCATC 60.119 43.478 0.00 0.00 38.76 2.92
1338 1422 2.448453 TGCTTTGCATGGACATCATCA 58.552 42.857 0.00 0.00 32.92 3.07
1339 1423 3.028130 TGCTTTGCATGGACATCATCAT 58.972 40.909 0.00 0.00 32.92 2.45
1347 1431 4.688045 GCATGGACATCATCATATAGGGGG 60.688 50.000 0.00 0.00 32.92 5.40
1535 1635 1.191647 GCCGTCAACAAACGTAGACAG 59.808 52.381 0.00 0.00 41.01 3.51
1537 1637 3.314553 CCGTCAACAAACGTAGACAGAT 58.685 45.455 0.00 0.00 41.01 2.90
1555 1655 4.215613 ACAGATTTACCCGTCTTTTCTTGC 59.784 41.667 0.00 0.00 0.00 4.01
1579 1679 0.866427 CGGCAGACAGATCATGATGC 59.134 55.000 14.30 10.62 41.43 3.91
1581 1681 2.288640 CGGCAGACAGATCATGATGCTA 60.289 50.000 14.30 0.00 41.68 3.49
1582 1682 3.736720 GGCAGACAGATCATGATGCTAA 58.263 45.455 14.30 0.00 41.68 3.09
1583 1683 3.747010 GGCAGACAGATCATGATGCTAAG 59.253 47.826 14.30 0.63 41.68 2.18
1584 1684 3.186817 GCAGACAGATCATGATGCTAAGC 59.813 47.826 14.30 6.41 40.05 3.09
1585 1685 4.377897 CAGACAGATCATGATGCTAAGCA 58.622 43.478 14.30 0.00 44.86 3.91
1669 1793 6.267471 TCATCAAGTAAGAAATTTGCCAACCT 59.733 34.615 0.00 0.00 0.00 3.50
1677 1819 5.754782 AGAAATTTGCCAACCTTTTTCCTT 58.245 33.333 0.00 0.00 0.00 3.36
1689 1832 5.393866 ACCTTTTTCCTTTGAGAGGCAATA 58.606 37.500 0.00 0.00 45.87 1.90
1763 1910 0.253894 CCATGGAGCCTGACATCACA 59.746 55.000 5.56 0.00 0.00 3.58
1806 1953 2.780993 CCGCTAAAAACGTAGGCATTG 58.219 47.619 0.00 0.00 0.00 2.82
1817 1964 2.565841 GTAGGCATTGATGTCTCCACC 58.434 52.381 0.65 0.00 42.67 4.61
1821 1968 2.562298 GGCATTGATGTCTCCACCAAAA 59.438 45.455 0.00 0.00 0.00 2.44
1853 2000 4.824289 CTTCTAAATTGCTGCCCATTTGT 58.176 39.130 14.07 0.00 0.00 2.83
1856 2003 6.147864 TCTAAATTGCTGCCCATTTGTATC 57.852 37.500 14.07 0.00 0.00 2.24
1875 2023 6.464222 TGTATCTTCATCCAAACTTCGTTCT 58.536 36.000 0.00 0.00 0.00 3.01
1892 2040 7.860872 ACTTCGTTCTTGTGATTTGGAAATTAC 59.139 33.333 1.14 1.14 35.97 1.89
2011 2162 4.082190 GGAGGGAGCAAAATTAGTTTCCAC 60.082 45.833 0.00 0.00 0.00 4.02
2036 2187 4.799564 AGTGAGACAGTGAATCCTCTTC 57.200 45.455 0.00 0.00 0.00 2.87
2043 2194 2.746362 CAGTGAATCCTCTTCCAAGCAC 59.254 50.000 0.00 0.00 0.00 4.40
2087 2238 6.042093 CCCAAGTAGCCAAGTCTGATCTATTA 59.958 42.308 0.00 0.00 0.00 0.98
2113 2264 8.503458 TGTGAGAACATAACTAGTACTACCTC 57.497 38.462 0.00 0.33 0.00 3.85
2114 2265 7.555554 TGTGAGAACATAACTAGTACTACCTCC 59.444 40.741 0.00 0.00 0.00 4.30
2115 2266 6.765036 TGAGAACATAACTAGTACTACCTCCG 59.235 42.308 0.00 0.00 0.00 4.63
2116 2267 6.657875 AGAACATAACTAGTACTACCTCCGT 58.342 40.000 0.00 0.00 0.00 4.69
2117 2268 6.765512 AGAACATAACTAGTACTACCTCCGTC 59.234 42.308 0.00 0.00 0.00 4.79
2118 2269 5.372373 ACATAACTAGTACTACCTCCGTCC 58.628 45.833 0.00 0.00 0.00 4.79
2119 2270 3.289407 AACTAGTACTACCTCCGTCCC 57.711 52.381 0.00 0.00 0.00 4.46
2120 2271 2.200081 ACTAGTACTACCTCCGTCCCA 58.800 52.381 0.00 0.00 0.00 4.37
2121 2272 2.578021 ACTAGTACTACCTCCGTCCCAA 59.422 50.000 0.00 0.00 0.00 4.12
2122 2273 2.610438 AGTACTACCTCCGTCCCAAA 57.390 50.000 0.00 0.00 0.00 3.28
2123 2274 2.893424 AGTACTACCTCCGTCCCAAAA 58.107 47.619 0.00 0.00 0.00 2.44
2124 2275 3.447950 AGTACTACCTCCGTCCCAAAAT 58.552 45.455 0.00 0.00 0.00 1.82
2125 2276 2.781681 ACTACCTCCGTCCCAAAATG 57.218 50.000 0.00 0.00 0.00 2.32
2126 2277 1.339727 ACTACCTCCGTCCCAAAATGC 60.340 52.381 0.00 0.00 0.00 3.56
2127 2278 0.693622 TACCTCCGTCCCAAAATGCA 59.306 50.000 0.00 0.00 0.00 3.96
2128 2279 0.178975 ACCTCCGTCCCAAAATGCAA 60.179 50.000 0.00 0.00 0.00 4.08
2129 2280 0.527565 CCTCCGTCCCAAAATGCAAG 59.472 55.000 0.00 0.00 0.00 4.01
2130 2281 1.533625 CTCCGTCCCAAAATGCAAGA 58.466 50.000 0.00 0.00 0.00 3.02
2131 2282 1.200020 CTCCGTCCCAAAATGCAAGAC 59.800 52.381 0.00 0.00 0.00 3.01
2132 2283 0.243636 CCGTCCCAAAATGCAAGACC 59.756 55.000 0.00 0.00 0.00 3.85
2133 2284 0.958091 CGTCCCAAAATGCAAGACCA 59.042 50.000 0.00 0.00 0.00 4.02
2134 2285 1.545582 CGTCCCAAAATGCAAGACCAT 59.454 47.619 0.00 0.00 0.00 3.55
2135 2286 2.029110 CGTCCCAAAATGCAAGACCATT 60.029 45.455 0.00 0.00 37.03 3.16
2136 2287 3.554752 CGTCCCAAAATGCAAGACCATTT 60.555 43.478 0.00 0.00 44.81 2.32
2144 2295 6.998968 AAATGCAAGACCATTTTTGTCAAA 57.001 29.167 0.00 0.00 41.32 2.69
2145 2296 6.998968 AATGCAAGACCATTTTTGTCAAAA 57.001 29.167 6.65 6.65 36.30 2.44
2146 2297 6.998968 ATGCAAGACCATTTTTGTCAAAAA 57.001 29.167 22.32 22.32 43.76 1.94
2148 2299 7.388460 TGCAAGACCATTTTTGTCAAAAATT 57.612 28.000 26.49 17.05 46.01 1.82
2149 2300 7.249147 TGCAAGACCATTTTTGTCAAAAATTG 58.751 30.769 26.49 24.85 46.01 2.32
2150 2301 7.094463 TGCAAGACCATTTTTGTCAAAAATTGT 60.094 29.630 27.72 27.72 46.01 2.71
2171 2322 7.852971 TTGTCTTATAAGTATTTTGGGACGG 57.147 36.000 12.19 0.00 0.00 4.79
2172 2323 7.185318 TGTCTTATAAGTATTTTGGGACGGA 57.815 36.000 12.19 0.00 0.00 4.69
2173 2324 7.798071 TGTCTTATAAGTATTTTGGGACGGAT 58.202 34.615 12.19 0.00 0.00 4.18
2174 2325 7.713507 TGTCTTATAAGTATTTTGGGACGGATG 59.286 37.037 12.19 0.00 0.00 3.51
2175 2326 7.172703 GTCTTATAAGTATTTTGGGACGGATGG 59.827 40.741 12.19 0.00 0.00 3.51
2176 2327 5.640158 ATAAGTATTTTGGGACGGATGGA 57.360 39.130 0.00 0.00 0.00 3.41
2177 2328 3.560636 AGTATTTTGGGACGGATGGAG 57.439 47.619 0.00 0.00 0.00 3.86
2178 2329 2.844348 AGTATTTTGGGACGGATGGAGT 59.156 45.455 0.00 0.00 0.00 3.85
2179 2330 4.035112 AGTATTTTGGGACGGATGGAGTA 58.965 43.478 0.00 0.00 0.00 2.59
2187 2338 3.697045 GGGACGGATGGAGTATGAGATAG 59.303 52.174 0.00 0.00 0.00 2.08
2229 2380 2.276201 GGTTTGCCAACACCTTTGTTC 58.724 47.619 2.78 0.00 44.57 3.18
2233 2384 2.175202 TGCCAACACCTTTGTTCAACT 58.825 42.857 0.00 0.00 44.57 3.16
2297 2454 4.574013 CCTCAGACAGTGAATTCTATTGGC 59.426 45.833 7.05 4.73 33.60 4.52
2300 2457 4.940046 CAGACAGTGAATTCTATTGGCACT 59.060 41.667 7.05 0.00 40.17 4.40
2430 2593 6.607019 AGATTACACAAAGACCCCAAACTTA 58.393 36.000 0.00 0.00 0.00 2.24
2435 2598 7.227049 ACACAAAGACCCCAAACTTATATTG 57.773 36.000 0.00 0.00 0.00 1.90
2436 2599 6.099341 CACAAAGACCCCAAACTTATATTGC 58.901 40.000 0.00 0.00 0.00 3.56
2443 2606 5.139727 CCCCAAACTTATATTGCTGATCCA 58.860 41.667 0.00 0.00 0.00 3.41
2461 2625 2.429927 AAGCTTGTGGGTTGAAGCC 58.570 52.632 6.44 6.44 44.79 4.35
2474 2638 5.812436 GGGTTGAAGCCTCACTCTTTTGAG 61.812 50.000 6.10 0.00 41.51 3.02
2516 2680 2.841442 CCTCAGAAGGACCTTTCGTT 57.159 50.000 8.49 0.00 46.67 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.393448 TGGAACATCGGGTTTGACGA 59.607 50.000 0.00 0.00 45.19 4.20
1 2 2.921374 TGGAACATCGGGTTTGACG 58.079 52.632 0.00 0.00 40.63 4.35
14 15 2.095919 GTGTTTAGTCCGTGCATGGAAC 60.096 50.000 29.15 22.39 40.44 3.62
15 16 2.147958 GTGTTTAGTCCGTGCATGGAA 58.852 47.619 29.15 12.42 40.44 3.53
16 17 1.070914 TGTGTTTAGTCCGTGCATGGA 59.929 47.619 24.15 24.15 35.04 3.41
17 18 1.518325 TGTGTTTAGTCCGTGCATGG 58.482 50.000 19.62 19.62 0.00 3.66
18 19 3.188254 TCAATGTGTTTAGTCCGTGCATG 59.812 43.478 0.00 0.00 0.00 4.06
19 20 3.407698 TCAATGTGTTTAGTCCGTGCAT 58.592 40.909 0.00 0.00 0.00 3.96
20 21 2.805671 CTCAATGTGTTTAGTCCGTGCA 59.194 45.455 0.00 0.00 0.00 4.57
21 22 3.064207 TCTCAATGTGTTTAGTCCGTGC 58.936 45.455 0.00 0.00 0.00 5.34
22 23 5.408299 TCAATCTCAATGTGTTTAGTCCGTG 59.592 40.000 0.00 0.00 0.00 4.94
23 24 5.408604 GTCAATCTCAATGTGTTTAGTCCGT 59.591 40.000 0.00 0.00 0.00 4.69
24 25 5.639506 AGTCAATCTCAATGTGTTTAGTCCG 59.360 40.000 0.00 0.00 0.00 4.79
25 26 8.723942 ATAGTCAATCTCAATGTGTTTAGTCC 57.276 34.615 0.00 0.00 0.00 3.85
26 27 9.371136 TGATAGTCAATCTCAATGTGTTTAGTC 57.629 33.333 0.00 0.00 35.45 2.59
27 28 9.896645 ATGATAGTCAATCTCAATGTGTTTAGT 57.103 29.630 0.00 0.00 35.45 2.24
31 32 9.850628 CAAAATGATAGTCAATCTCAATGTGTT 57.149 29.630 0.00 0.00 35.45 3.32
32 33 9.017509 ACAAAATGATAGTCAATCTCAATGTGT 57.982 29.630 0.00 0.00 35.45 3.72
33 34 9.285770 CACAAAATGATAGTCAATCTCAATGTG 57.714 33.333 0.00 0.00 35.45 3.21
34 35 9.234827 TCACAAAATGATAGTCAATCTCAATGT 57.765 29.630 0.00 0.00 35.45 2.71
35 36 9.717892 CTCACAAAATGATAGTCAATCTCAATG 57.282 33.333 0.00 0.00 36.48 2.82
36 37 8.900781 CCTCACAAAATGATAGTCAATCTCAAT 58.099 33.333 0.00 0.00 36.48 2.57
37 38 7.337689 CCCTCACAAAATGATAGTCAATCTCAA 59.662 37.037 0.00 0.00 36.48 3.02
38 39 6.825213 CCCTCACAAAATGATAGTCAATCTCA 59.175 38.462 0.00 0.00 36.48 3.27
39 40 7.050377 TCCCTCACAAAATGATAGTCAATCTC 58.950 38.462 0.00 0.00 36.48 2.75
40 41 6.962182 TCCCTCACAAAATGATAGTCAATCT 58.038 36.000 0.00 0.00 36.48 2.40
41 42 7.201767 CCTTCCCTCACAAAATGATAGTCAATC 60.202 40.741 0.00 0.00 36.48 2.67
42 43 6.604795 CCTTCCCTCACAAAATGATAGTCAAT 59.395 38.462 0.00 0.00 36.48 2.57
43 44 5.945784 CCTTCCCTCACAAAATGATAGTCAA 59.054 40.000 0.00 0.00 36.48 3.18
44 45 5.014123 ACCTTCCCTCACAAAATGATAGTCA 59.986 40.000 0.00 0.00 36.48 3.41
45 46 5.355350 CACCTTCCCTCACAAAATGATAGTC 59.645 44.000 0.00 0.00 36.48 2.59
46 47 5.222130 ACACCTTCCCTCACAAAATGATAGT 60.222 40.000 0.00 0.00 36.48 2.12
47 48 5.256474 ACACCTTCCCTCACAAAATGATAG 58.744 41.667 0.00 0.00 36.48 2.08
48 49 5.255397 ACACCTTCCCTCACAAAATGATA 57.745 39.130 0.00 0.00 36.48 2.15
49 50 4.118168 ACACCTTCCCTCACAAAATGAT 57.882 40.909 0.00 0.00 36.48 2.45
50 51 3.593442 ACACCTTCCCTCACAAAATGA 57.407 42.857 0.00 0.00 35.45 2.57
51 52 3.799917 GCAACACCTTCCCTCACAAAATG 60.800 47.826 0.00 0.00 0.00 2.32
52 53 2.365293 GCAACACCTTCCCTCACAAAAT 59.635 45.455 0.00 0.00 0.00 1.82
53 54 1.754226 GCAACACCTTCCCTCACAAAA 59.246 47.619 0.00 0.00 0.00 2.44
54 55 1.341482 TGCAACACCTTCCCTCACAAA 60.341 47.619 0.00 0.00 0.00 2.83
55 56 0.257328 TGCAACACCTTCCCTCACAA 59.743 50.000 0.00 0.00 0.00 3.33
56 57 0.465460 GTGCAACACCTTCCCTCACA 60.465 55.000 0.00 0.00 36.32 3.58
57 58 0.465460 TGTGCAACACCTTCCCTCAC 60.465 55.000 0.00 0.00 45.67 3.51
58 59 0.179020 CTGTGCAACACCTTCCCTCA 60.179 55.000 0.00 0.00 45.67 3.86
59 60 0.108585 TCTGTGCAACACCTTCCCTC 59.891 55.000 0.00 0.00 45.67 4.30
60 61 0.550914 TTCTGTGCAACACCTTCCCT 59.449 50.000 0.00 0.00 45.67 4.20
61 62 0.954452 CTTCTGTGCAACACCTTCCC 59.046 55.000 0.00 0.00 45.67 3.97
62 63 0.312102 GCTTCTGTGCAACACCTTCC 59.688 55.000 0.00 0.00 45.67 3.46
63 64 1.312815 AGCTTCTGTGCAACACCTTC 58.687 50.000 0.00 0.00 45.67 3.46
64 65 2.158755 ACTAGCTTCTGTGCAACACCTT 60.159 45.455 0.00 0.00 45.67 3.50
65 66 1.417890 ACTAGCTTCTGTGCAACACCT 59.582 47.619 0.00 0.00 45.67 4.00
66 67 1.884235 ACTAGCTTCTGTGCAACACC 58.116 50.000 0.00 0.00 45.67 4.16
67 68 3.390135 TGTACTAGCTTCTGTGCAACAC 58.610 45.455 0.00 0.00 45.67 3.32
69 70 4.058817 ACTTGTACTAGCTTCTGTGCAAC 58.941 43.478 4.10 0.00 34.76 4.17
70 71 4.202212 TGACTTGTACTAGCTTCTGTGCAA 60.202 41.667 4.10 13.58 36.68 4.08
71 72 3.320826 TGACTTGTACTAGCTTCTGTGCA 59.679 43.478 4.10 0.00 34.99 4.57
72 73 3.914312 TGACTTGTACTAGCTTCTGTGC 58.086 45.455 4.10 0.00 0.00 4.57
73 74 4.021894 ACCTGACTTGTACTAGCTTCTGTG 60.022 45.833 4.10 0.00 0.00 3.66
74 75 4.153411 ACCTGACTTGTACTAGCTTCTGT 58.847 43.478 4.10 0.00 0.00 3.41
75 76 4.792521 ACCTGACTTGTACTAGCTTCTG 57.207 45.455 4.10 0.59 0.00 3.02
76 77 5.810080 AAACCTGACTTGTACTAGCTTCT 57.190 39.130 4.10 0.00 0.00 2.85
77 78 7.548967 AGATAAACCTGACTTGTACTAGCTTC 58.451 38.462 4.10 0.00 0.00 3.86
78 79 7.397761 AGAGATAAACCTGACTTGTACTAGCTT 59.602 37.037 4.10 0.00 0.00 3.74
79 80 6.893005 AGAGATAAACCTGACTTGTACTAGCT 59.107 38.462 4.10 0.00 0.00 3.32
80 81 7.102847 AGAGATAAACCTGACTTGTACTAGC 57.897 40.000 4.10 0.00 0.00 3.42
81 82 7.911205 CGAAGAGATAAACCTGACTTGTACTAG 59.089 40.741 2.56 2.56 0.00 2.57
82 83 7.609146 TCGAAGAGATAAACCTGACTTGTACTA 59.391 37.037 0.00 0.00 0.00 1.82
83 84 6.433404 TCGAAGAGATAAACCTGACTTGTACT 59.567 38.462 0.00 0.00 0.00 2.73
84 85 6.618811 TCGAAGAGATAAACCTGACTTGTAC 58.381 40.000 0.00 0.00 0.00 2.90
85 86 6.829229 TCGAAGAGATAAACCTGACTTGTA 57.171 37.500 0.00 0.00 0.00 2.41
86 87 5.723672 TCGAAGAGATAAACCTGACTTGT 57.276 39.130 0.00 0.00 0.00 3.16
87 88 6.868864 TCTTTCGAAGAGATAAACCTGACTTG 59.131 38.462 0.00 0.00 38.43 3.16
88 89 6.994221 TCTTTCGAAGAGATAAACCTGACTT 58.006 36.000 0.00 0.00 38.43 3.01
89 90 6.591750 TCTTTCGAAGAGATAAACCTGACT 57.408 37.500 0.00 0.00 38.43 3.41
90 91 7.036220 TGATCTTTCGAAGAGATAAACCTGAC 58.964 38.462 17.26 7.86 41.61 3.51
91 92 7.170393 TGATCTTTCGAAGAGATAAACCTGA 57.830 36.000 17.26 0.00 41.61 3.86
92 93 7.547370 AGTTGATCTTTCGAAGAGATAAACCTG 59.453 37.037 26.63 0.00 42.36 4.00
93 94 7.616313 AGTTGATCTTTCGAAGAGATAAACCT 58.384 34.615 26.63 18.86 42.36 3.50
94 95 7.835634 AGTTGATCTTTCGAAGAGATAAACC 57.164 36.000 26.63 17.80 42.36 3.27
95 96 7.690224 GCAAGTTGATCTTTCGAAGAGATAAAC 59.310 37.037 24.97 24.97 41.98 2.01
96 97 7.411912 CGCAAGTTGATCTTTCGAAGAGATAAA 60.412 37.037 17.26 14.78 43.30 1.40
97 98 6.035005 CGCAAGTTGATCTTTCGAAGAGATAA 59.965 38.462 17.26 10.99 43.30 1.75
98 99 5.516696 CGCAAGTTGATCTTTCGAAGAGATA 59.483 40.000 17.26 6.04 43.30 1.98
99 100 4.328440 CGCAAGTTGATCTTTCGAAGAGAT 59.672 41.667 17.26 17.26 43.30 2.75
100 101 3.675225 CGCAAGTTGATCTTTCGAAGAGA 59.325 43.478 7.16 10.92 43.30 3.10
101 102 3.181526 CCGCAAGTTGATCTTTCGAAGAG 60.182 47.826 7.16 0.00 43.30 2.85
102 103 2.736721 CCGCAAGTTGATCTTTCGAAGA 59.263 45.455 7.16 0.00 43.30 2.87
103 104 2.736721 TCCGCAAGTTGATCTTTCGAAG 59.263 45.455 7.16 0.00 43.30 3.79
104 105 2.478894 GTCCGCAAGTTGATCTTTCGAA 59.521 45.455 7.16 0.00 43.30 3.71
105 106 2.066262 GTCCGCAAGTTGATCTTTCGA 58.934 47.619 7.16 0.00 43.30 3.71
106 107 1.798223 TGTCCGCAAGTTGATCTTTCG 59.202 47.619 7.16 0.00 41.11 3.46
107 108 3.686726 AGATGTCCGCAAGTTGATCTTTC 59.313 43.478 7.16 0.00 33.63 2.62
108 109 3.679389 AGATGTCCGCAAGTTGATCTTT 58.321 40.909 7.16 0.00 33.63 2.52
109 110 3.340814 AGATGTCCGCAAGTTGATCTT 57.659 42.857 7.16 0.00 36.75 2.40
110 111 3.265791 GAAGATGTCCGCAAGTTGATCT 58.734 45.455 7.16 2.60 0.00 2.75
111 112 3.002791 TGAAGATGTCCGCAAGTTGATC 58.997 45.455 7.16 0.06 0.00 2.92
112 113 2.744202 GTGAAGATGTCCGCAAGTTGAT 59.256 45.455 7.16 0.00 0.00 2.57
113 114 2.143122 GTGAAGATGTCCGCAAGTTGA 58.857 47.619 7.16 0.00 0.00 3.18
114 115 1.197721 GGTGAAGATGTCCGCAAGTTG 59.802 52.381 0.00 0.00 0.00 3.16
115 116 1.202758 TGGTGAAGATGTCCGCAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
116 117 0.396435 TGGTGAAGATGTCCGCAAGT 59.604 50.000 0.00 0.00 0.00 3.16
117 118 1.466167 CTTGGTGAAGATGTCCGCAAG 59.534 52.381 0.00 0.00 0.00 4.01
118 119 1.522668 CTTGGTGAAGATGTCCGCAA 58.477 50.000 0.00 0.00 0.00 4.85
119 120 0.955428 GCTTGGTGAAGATGTCCGCA 60.955 55.000 0.00 0.00 0.00 5.69
120 121 1.648467 GGCTTGGTGAAGATGTCCGC 61.648 60.000 0.00 0.00 0.00 5.54
121 122 0.036010 AGGCTTGGTGAAGATGTCCG 60.036 55.000 0.00 0.00 0.00 4.79
122 123 1.280421 AGAGGCTTGGTGAAGATGTCC 59.720 52.381 0.00 0.00 0.00 4.02
123 124 2.777832 AGAGGCTTGGTGAAGATGTC 57.222 50.000 0.00 0.00 0.00 3.06
124 125 2.237392 GGTAGAGGCTTGGTGAAGATGT 59.763 50.000 0.00 0.00 0.00 3.06
125 126 2.503356 AGGTAGAGGCTTGGTGAAGATG 59.497 50.000 0.00 0.00 0.00 2.90
126 127 2.839228 AGGTAGAGGCTTGGTGAAGAT 58.161 47.619 0.00 0.00 0.00 2.40
127 128 2.327325 AGGTAGAGGCTTGGTGAAGA 57.673 50.000 0.00 0.00 0.00 2.87
128 129 2.569404 AGAAGGTAGAGGCTTGGTGAAG 59.431 50.000 0.00 0.00 0.00 3.02
129 130 2.567615 GAGAAGGTAGAGGCTTGGTGAA 59.432 50.000 0.00 0.00 0.00 3.18
130 131 2.180276 GAGAAGGTAGAGGCTTGGTGA 58.820 52.381 0.00 0.00 0.00 4.02
131 132 1.208293 GGAGAAGGTAGAGGCTTGGTG 59.792 57.143 0.00 0.00 0.00 4.17
132 133 1.574263 GGAGAAGGTAGAGGCTTGGT 58.426 55.000 0.00 0.00 0.00 3.67
133 134 0.833949 GGGAGAAGGTAGAGGCTTGG 59.166 60.000 0.00 0.00 0.00 3.61
134 135 1.573108 TGGGAGAAGGTAGAGGCTTG 58.427 55.000 0.00 0.00 0.00 4.01
135 136 2.122768 CATGGGAGAAGGTAGAGGCTT 58.877 52.381 0.00 0.00 0.00 4.35
136 137 1.008938 ACATGGGAGAAGGTAGAGGCT 59.991 52.381 0.00 0.00 0.00 4.58
137 138 1.501582 ACATGGGAGAAGGTAGAGGC 58.498 55.000 0.00 0.00 0.00 4.70
138 139 3.519510 TCAAACATGGGAGAAGGTAGAGG 59.480 47.826 0.00 0.00 0.00 3.69
139 140 4.383552 CCTCAAACATGGGAGAAGGTAGAG 60.384 50.000 11.50 0.00 32.87 2.43
140 141 3.519510 CCTCAAACATGGGAGAAGGTAGA 59.480 47.826 11.50 0.00 32.87 2.59
141 142 3.264450 ACCTCAAACATGGGAGAAGGTAG 59.736 47.826 11.50 0.00 32.87 3.18
142 143 3.256704 ACCTCAAACATGGGAGAAGGTA 58.743 45.455 11.50 0.00 32.87 3.08
143 144 2.040412 GACCTCAAACATGGGAGAAGGT 59.960 50.000 11.50 9.90 32.87 3.50
144 145 2.307098 AGACCTCAAACATGGGAGAAGG 59.693 50.000 11.50 7.21 32.87 3.46
145 146 3.244700 ACAGACCTCAAACATGGGAGAAG 60.245 47.826 11.50 1.20 32.87 2.85
146 147 2.711009 ACAGACCTCAAACATGGGAGAA 59.289 45.455 11.50 0.00 32.87 2.87
147 148 2.338809 ACAGACCTCAAACATGGGAGA 58.661 47.619 11.50 0.00 32.87 3.71
148 149 2.867109 ACAGACCTCAAACATGGGAG 57.133 50.000 0.00 0.85 0.00 4.30
149 150 2.571653 CCTACAGACCTCAAACATGGGA 59.428 50.000 0.00 0.00 0.00 4.37
150 151 2.941415 GCCTACAGACCTCAAACATGGG 60.941 54.545 0.00 0.00 0.00 4.00
151 152 2.359900 GCCTACAGACCTCAAACATGG 58.640 52.381 0.00 0.00 0.00 3.66
152 153 2.002586 CGCCTACAGACCTCAAACATG 58.997 52.381 0.00 0.00 0.00 3.21
153 154 1.676014 GCGCCTACAGACCTCAAACAT 60.676 52.381 0.00 0.00 0.00 2.71
154 155 0.320421 GCGCCTACAGACCTCAAACA 60.320 55.000 0.00 0.00 0.00 2.83
155 156 0.320421 TGCGCCTACAGACCTCAAAC 60.320 55.000 4.18 0.00 0.00 2.93
156 157 0.394938 TTGCGCCTACAGACCTCAAA 59.605 50.000 4.18 0.00 0.00 2.69
157 158 0.613260 ATTGCGCCTACAGACCTCAA 59.387 50.000 4.18 0.00 0.00 3.02
158 159 0.175760 GATTGCGCCTACAGACCTCA 59.824 55.000 4.18 0.00 0.00 3.86
159 160 0.461961 AGATTGCGCCTACAGACCTC 59.538 55.000 4.18 0.00 0.00 3.85
160 161 0.461961 GAGATTGCGCCTACAGACCT 59.538 55.000 4.18 0.00 0.00 3.85
161 162 0.175760 TGAGATTGCGCCTACAGACC 59.824 55.000 4.18 0.00 0.00 3.85
162 163 1.661112 GTTGAGATTGCGCCTACAGAC 59.339 52.381 4.18 0.00 0.00 3.51
163 164 1.405526 GGTTGAGATTGCGCCTACAGA 60.406 52.381 4.18 0.00 0.00 3.41
164 165 1.009829 GGTTGAGATTGCGCCTACAG 58.990 55.000 4.18 0.00 0.00 2.74
165 166 0.613260 AGGTTGAGATTGCGCCTACA 59.387 50.000 4.18 0.00 0.00 2.74
166 167 1.291132 GAGGTTGAGATTGCGCCTAC 58.709 55.000 4.18 0.00 0.00 3.18
167 168 0.178068 GGAGGTTGAGATTGCGCCTA 59.822 55.000 4.18 0.00 0.00 3.93
168 169 1.078143 GGAGGTTGAGATTGCGCCT 60.078 57.895 4.18 0.00 0.00 5.52
169 170 0.178068 TAGGAGGTTGAGATTGCGCC 59.822 55.000 4.18 0.00 0.00 6.53
170 171 1.137086 TCTAGGAGGTTGAGATTGCGC 59.863 52.381 0.00 0.00 0.00 6.09
171 172 3.742433 ATCTAGGAGGTTGAGATTGCG 57.258 47.619 0.00 0.00 0.00 4.85
172 173 5.799827 AGTATCTAGGAGGTTGAGATTGC 57.200 43.478 0.00 0.00 32.27 3.56
173 174 7.353414 TGAAGTATCTAGGAGGTTGAGATTG 57.647 40.000 0.00 0.00 32.27 2.67
174 175 6.553100 CCTGAAGTATCTAGGAGGTTGAGATT 59.447 42.308 0.00 0.00 33.33 2.40
175 176 6.074648 CCTGAAGTATCTAGGAGGTTGAGAT 58.925 44.000 0.00 0.00 33.33 2.75
176 177 5.450453 CCTGAAGTATCTAGGAGGTTGAGA 58.550 45.833 0.00 0.00 33.33 3.27
177 178 4.038642 GCCTGAAGTATCTAGGAGGTTGAG 59.961 50.000 0.00 0.00 33.33 3.02
178 179 3.961408 GCCTGAAGTATCTAGGAGGTTGA 59.039 47.826 0.00 0.00 33.33 3.18
179 180 3.243569 CGCCTGAAGTATCTAGGAGGTTG 60.244 52.174 0.00 0.00 33.33 3.77
180 181 2.959707 CGCCTGAAGTATCTAGGAGGTT 59.040 50.000 0.00 0.00 33.33 3.50
181 182 2.091775 ACGCCTGAAGTATCTAGGAGGT 60.092 50.000 0.00 0.00 35.95 3.85
182 183 2.294791 CACGCCTGAAGTATCTAGGAGG 59.705 54.545 0.00 0.00 35.95 4.30
183 184 3.215151 TCACGCCTGAAGTATCTAGGAG 58.785 50.000 0.00 0.00 37.41 3.69
184 185 3.215151 CTCACGCCTGAAGTATCTAGGA 58.785 50.000 0.00 0.00 33.33 2.94
185 186 2.952978 ACTCACGCCTGAAGTATCTAGG 59.047 50.000 0.00 0.00 34.67 3.02
186 187 4.096532 TCAACTCACGCCTGAAGTATCTAG 59.903 45.833 0.00 0.00 0.00 2.43
187 188 4.014406 TCAACTCACGCCTGAAGTATCTA 58.986 43.478 0.00 0.00 0.00 1.98
188 189 2.826128 TCAACTCACGCCTGAAGTATCT 59.174 45.455 0.00 0.00 0.00 1.98
189 190 3.119459 TCTCAACTCACGCCTGAAGTATC 60.119 47.826 0.00 0.00 0.00 2.24
190 191 2.826128 TCTCAACTCACGCCTGAAGTAT 59.174 45.455 0.00 0.00 0.00 2.12
191 192 2.235891 TCTCAACTCACGCCTGAAGTA 58.764 47.619 0.00 0.00 0.00 2.24
192 193 1.040646 TCTCAACTCACGCCTGAAGT 58.959 50.000 0.00 0.00 0.00 3.01
193 194 2.376808 ATCTCAACTCACGCCTGAAG 57.623 50.000 0.00 0.00 0.00 3.02
194 195 2.037121 TCAATCTCAACTCACGCCTGAA 59.963 45.455 0.00 0.00 0.00 3.02
195 196 1.618343 TCAATCTCAACTCACGCCTGA 59.382 47.619 0.00 0.00 0.00 3.86
196 197 1.998315 CTCAATCTCAACTCACGCCTG 59.002 52.381 0.00 0.00 0.00 4.85
197 198 1.066573 CCTCAATCTCAACTCACGCCT 60.067 52.381 0.00 0.00 0.00 5.52
198 199 1.363744 CCTCAATCTCAACTCACGCC 58.636 55.000 0.00 0.00 0.00 5.68
199 200 1.066858 TCCCTCAATCTCAACTCACGC 60.067 52.381 0.00 0.00 0.00 5.34
200 201 2.417924 CCTCCCTCAATCTCAACTCACG 60.418 54.545 0.00 0.00 0.00 4.35
201 202 2.093235 CCCTCCCTCAATCTCAACTCAC 60.093 54.545 0.00 0.00 0.00 3.51
202 203 2.191400 CCCTCCCTCAATCTCAACTCA 58.809 52.381 0.00 0.00 0.00 3.41
203 204 2.093235 CACCCTCCCTCAATCTCAACTC 60.093 54.545 0.00 0.00 0.00 3.01
204 205 1.912043 CACCCTCCCTCAATCTCAACT 59.088 52.381 0.00 0.00 0.00 3.16
205 206 1.630878 ACACCCTCCCTCAATCTCAAC 59.369 52.381 0.00 0.00 0.00 3.18
206 207 2.044793 ACACCCTCCCTCAATCTCAA 57.955 50.000 0.00 0.00 0.00 3.02
207 208 2.044793 AACACCCTCCCTCAATCTCA 57.955 50.000 0.00 0.00 0.00 3.27
208 209 4.019231 AGTTTAACACCCTCCCTCAATCTC 60.019 45.833 0.00 0.00 0.00 2.75
209 210 3.916989 AGTTTAACACCCTCCCTCAATCT 59.083 43.478 0.00 0.00 0.00 2.40
210 211 4.302559 AGTTTAACACCCTCCCTCAATC 57.697 45.455 0.00 0.00 0.00 2.67
211 212 4.663334 GAAGTTTAACACCCTCCCTCAAT 58.337 43.478 0.00 0.00 0.00 2.57
212 213 3.495453 CGAAGTTTAACACCCTCCCTCAA 60.495 47.826 0.00 0.00 0.00 3.02
213 214 2.038033 CGAAGTTTAACACCCTCCCTCA 59.962 50.000 0.00 0.00 0.00 3.86
214 215 2.038164 ACGAAGTTTAACACCCTCCCTC 59.962 50.000 0.00 0.00 37.78 4.30
215 216 2.052468 ACGAAGTTTAACACCCTCCCT 58.948 47.619 0.00 0.00 37.78 4.20
216 217 2.556144 ACGAAGTTTAACACCCTCCC 57.444 50.000 0.00 0.00 37.78 4.30
217 218 4.999311 ACAATACGAAGTTTAACACCCTCC 59.001 41.667 0.00 0.00 37.78 4.30
218 219 6.183360 GCTACAATACGAAGTTTAACACCCTC 60.183 42.308 0.00 0.00 37.78 4.30
219 220 5.640783 GCTACAATACGAAGTTTAACACCCT 59.359 40.000 0.00 0.00 37.78 4.34
220 221 5.163824 GGCTACAATACGAAGTTTAACACCC 60.164 44.000 0.00 0.00 37.78 4.61
221 222 5.163824 GGGCTACAATACGAAGTTTAACACC 60.164 44.000 0.00 0.00 37.78 4.16
222 223 5.640783 AGGGCTACAATACGAAGTTTAACAC 59.359 40.000 0.00 0.00 37.78 3.32
223 224 5.797051 AGGGCTACAATACGAAGTTTAACA 58.203 37.500 0.00 0.00 37.78 2.41
224 225 8.333186 CAATAGGGCTACAATACGAAGTTTAAC 58.667 37.037 0.00 0.00 37.78 2.01
225 226 8.042515 ACAATAGGGCTACAATACGAAGTTTAA 58.957 33.333 0.00 0.00 37.78 1.52
226 227 7.493320 CACAATAGGGCTACAATACGAAGTTTA 59.507 37.037 0.00 0.00 37.78 2.01
227 228 6.315393 CACAATAGGGCTACAATACGAAGTTT 59.685 38.462 0.00 0.00 37.78 2.66
228 229 5.815740 CACAATAGGGCTACAATACGAAGTT 59.184 40.000 0.00 0.00 37.78 2.66
230 231 5.357257 ACACAATAGGGCTACAATACGAAG 58.643 41.667 0.00 0.00 0.00 3.79
231 232 5.347620 ACACAATAGGGCTACAATACGAA 57.652 39.130 0.00 0.00 0.00 3.85
232 233 6.468333 TTACACAATAGGGCTACAATACGA 57.532 37.500 0.00 0.00 0.00 3.43
233 234 7.439955 TGATTTACACAATAGGGCTACAATACG 59.560 37.037 0.00 0.00 0.00 3.06
234 235 8.671384 TGATTTACACAATAGGGCTACAATAC 57.329 34.615 0.00 0.00 0.00 1.89
237 238 9.502091 GATATGATTTACACAATAGGGCTACAA 57.498 33.333 0.00 0.00 0.00 2.41
238 239 8.880244 AGATATGATTTACACAATAGGGCTACA 58.120 33.333 0.00 0.00 0.00 2.74
239 240 9.726438 AAGATATGATTTACACAATAGGGCTAC 57.274 33.333 0.00 0.00 0.00 3.58
256 257 9.857656 ACAAGTCCAACATCAATAAGATATGAT 57.142 29.630 0.00 0.00 36.74 2.45
261 262 9.113838 GACATACAAGTCCAACATCAATAAGAT 57.886 33.333 0.00 0.00 32.93 2.40
262 263 8.100164 TGACATACAAGTCCAACATCAATAAGA 58.900 33.333 0.00 0.00 37.73 2.10
263 264 8.267620 TGACATACAAGTCCAACATCAATAAG 57.732 34.615 0.00 0.00 37.73 1.73
264 265 8.806429 ATGACATACAAGTCCAACATCAATAA 57.194 30.769 0.00 0.00 37.73 1.40
265 266 8.046107 TGATGACATACAAGTCCAACATCAATA 58.954 33.333 0.00 0.00 39.44 1.90
266 267 6.885918 TGATGACATACAAGTCCAACATCAAT 59.114 34.615 0.00 0.00 39.44 2.57
267 268 6.237154 TGATGACATACAAGTCCAACATCAA 58.763 36.000 0.00 0.00 39.44 2.57
268 269 5.803552 TGATGACATACAAGTCCAACATCA 58.196 37.500 0.00 0.00 39.87 3.07
269 270 6.932356 ATGATGACATACAAGTCCAACATC 57.068 37.500 0.00 0.00 37.73 3.06
270 271 8.985315 ATAATGATGACATACAAGTCCAACAT 57.015 30.769 0.00 0.00 37.73 2.71
315 316 2.586648 ACTGGCTTAACCCTCAAAGG 57.413 50.000 0.00 0.00 37.83 3.11
316 317 2.820197 GGAACTGGCTTAACCCTCAAAG 59.180 50.000 0.00 0.00 37.83 2.77
317 318 2.445525 AGGAACTGGCTTAACCCTCAAA 59.554 45.455 0.00 0.00 37.18 2.69
318 319 2.039879 GAGGAACTGGCTTAACCCTCAA 59.960 50.000 0.00 0.00 41.55 3.02
319 320 1.628846 GAGGAACTGGCTTAACCCTCA 59.371 52.381 0.00 0.00 41.55 3.86
320 321 1.628846 TGAGGAACTGGCTTAACCCTC 59.371 52.381 0.00 0.00 41.55 4.30
321 322 1.742308 TGAGGAACTGGCTTAACCCT 58.258 50.000 0.00 0.00 41.55 4.34
322 323 2.579410 TTGAGGAACTGGCTTAACCC 57.421 50.000 0.00 0.00 41.55 4.11
323 324 3.005472 GGTTTTGAGGAACTGGCTTAACC 59.995 47.826 0.00 0.00 41.55 2.85
324 325 3.889538 AGGTTTTGAGGAACTGGCTTAAC 59.110 43.478 0.00 0.00 41.55 2.01
325 326 4.178956 AGGTTTTGAGGAACTGGCTTAA 57.821 40.909 0.00 0.00 41.55 1.85
326 327 3.876309 AGGTTTTGAGGAACTGGCTTA 57.124 42.857 0.00 0.00 41.55 3.09
327 328 2.755952 AGGTTTTGAGGAACTGGCTT 57.244 45.000 0.00 0.00 41.55 4.35
328 329 2.550208 CGTAGGTTTTGAGGAACTGGCT 60.550 50.000 0.00 0.00 41.55 4.75
329 330 1.804748 CGTAGGTTTTGAGGAACTGGC 59.195 52.381 0.00 0.00 41.55 4.85
330 331 3.121738 ACGTAGGTTTTGAGGAACTGG 57.878 47.619 0.00 0.00 41.55 4.00
342 343 4.953940 TGGTAGGTGTAAAACGTAGGTT 57.046 40.909 0.00 0.00 38.22 3.50
343 344 4.953940 TTGGTAGGTGTAAAACGTAGGT 57.046 40.909 0.00 0.00 30.00 3.08
344 345 4.150451 CGTTTGGTAGGTGTAAAACGTAGG 59.850 45.833 10.44 0.00 45.89 3.18
345 346 5.254669 CGTTTGGTAGGTGTAAAACGTAG 57.745 43.478 10.44 0.00 45.89 3.51
349 350 3.058708 GGCTCGTTTGGTAGGTGTAAAAC 60.059 47.826 0.00 0.00 0.00 2.43
350 351 3.140623 GGCTCGTTTGGTAGGTGTAAAA 58.859 45.455 0.00 0.00 0.00 1.52
351 352 2.104451 TGGCTCGTTTGGTAGGTGTAAA 59.896 45.455 0.00 0.00 0.00 2.01
352 353 1.693062 TGGCTCGTTTGGTAGGTGTAA 59.307 47.619 0.00 0.00 0.00 2.41
353 354 1.001181 GTGGCTCGTTTGGTAGGTGTA 59.999 52.381 0.00 0.00 0.00 2.90
354 355 0.250166 GTGGCTCGTTTGGTAGGTGT 60.250 55.000 0.00 0.00 0.00 4.16
355 356 0.034896 AGTGGCTCGTTTGGTAGGTG 59.965 55.000 0.00 0.00 0.00 4.00
356 357 0.320697 GAGTGGCTCGTTTGGTAGGT 59.679 55.000 0.00 0.00 0.00 3.08
357 358 0.608640 AGAGTGGCTCGTTTGGTAGG 59.391 55.000 0.00 0.00 35.36 3.18
358 359 1.714794 CAGAGTGGCTCGTTTGGTAG 58.285 55.000 0.00 0.00 35.36 3.18
359 360 0.320421 GCAGAGTGGCTCGTTTGGTA 60.320 55.000 0.00 0.00 35.36 3.25
360 361 1.598130 GCAGAGTGGCTCGTTTGGT 60.598 57.895 0.00 0.00 35.36 3.67
361 362 2.328099 GGCAGAGTGGCTCGTTTGG 61.328 63.158 0.00 0.00 40.14 3.28
362 363 3.257933 GGCAGAGTGGCTCGTTTG 58.742 61.111 0.00 0.00 40.14 2.93
517 523 4.552365 ATCGGGTGGCATGCCTCG 62.552 66.667 35.53 31.46 36.94 4.63
518 524 2.124151 AATCGGGTGGCATGCCTC 60.124 61.111 35.53 31.20 36.94 4.70
519 525 2.440796 CAATCGGGTGGCATGCCT 60.441 61.111 35.53 13.42 36.94 4.75
520 526 2.755469 ACAATCGGGTGGCATGCC 60.755 61.111 30.54 30.54 0.00 4.40
521 527 2.045708 TGACAATCGGGTGGCATGC 61.046 57.895 9.90 9.90 29.08 4.06
522 528 1.656818 GGTGACAATCGGGTGGCATG 61.657 60.000 0.00 0.00 39.22 4.06
523 529 1.378514 GGTGACAATCGGGTGGCAT 60.379 57.895 0.00 0.00 39.22 4.40
524 530 2.033448 GGTGACAATCGGGTGGCA 59.967 61.111 0.00 0.00 32.74 4.92
525 531 3.124921 CGGTGACAATCGGGTGGC 61.125 66.667 0.00 0.00 0.00 5.01
526 532 1.447838 CTCGGTGACAATCGGGTGG 60.448 63.158 0.57 0.00 0.00 4.61
527 533 1.292223 ACTCGGTGACAATCGGGTG 59.708 57.895 4.44 0.00 38.78 4.61
528 534 1.292223 CACTCGGTGACAATCGGGT 59.708 57.895 0.00 0.00 41.13 5.28
529 535 2.100631 GCACTCGGTGACAATCGGG 61.101 63.158 8.04 0.00 35.23 5.14
530 536 2.444624 CGCACTCGGTGACAATCGG 61.445 63.158 8.04 0.00 35.23 4.18
531 537 1.733041 ACGCACTCGGTGACAATCG 60.733 57.895 8.04 4.45 40.69 3.34
532 538 1.781555 CACGCACTCGGTGACAATC 59.218 57.895 8.04 0.00 40.69 2.67
533 539 2.317609 GCACGCACTCGGTGACAAT 61.318 57.895 8.04 0.00 40.69 2.71
534 540 2.964925 GCACGCACTCGGTGACAA 60.965 61.111 8.04 0.00 40.69 3.18
536 542 4.994201 TCGCACGCACTCGGTGAC 62.994 66.667 8.04 0.01 40.69 3.67
537 543 4.050934 ATCGCACGCACTCGGTGA 62.051 61.111 8.04 0.00 40.69 4.02
538 544 3.842126 CATCGCACGCACTCGGTG 61.842 66.667 0.25 0.25 40.69 4.94
541 547 3.557479 ATGCATCGCACGCACTCG 61.557 61.111 0.00 0.00 43.04 4.18
542 548 2.022346 CATGCATCGCACGCACTC 59.978 61.111 0.00 0.00 43.04 3.51
547 553 2.051614 GATGGCATGCATCGCACG 60.052 61.111 21.36 0.70 43.04 5.34
548 554 1.164662 AGAGATGGCATGCATCGCAC 61.165 55.000 21.36 15.10 43.04 5.34
554 560 2.678470 TGGCAGAGATGGCATGCA 59.322 55.556 21.36 6.13 41.78 3.96
583 593 3.214123 CATGCAGGGTGATGGCGG 61.214 66.667 0.00 0.00 0.00 6.13
606 616 0.652592 GTCGGCAATTCTGTGATCCG 59.347 55.000 0.00 0.00 38.34 4.18
658 668 4.218417 ACAATCTTATCAGGCCAACACAAC 59.782 41.667 5.01 0.00 0.00 3.32
757 770 0.179073 CTCCCGATCGCCATGAAACT 60.179 55.000 10.32 0.00 0.00 2.66
831 844 2.526873 ACGTCCTCTTGGGGCAGT 60.527 61.111 0.00 0.00 40.36 4.40
834 847 2.358737 CACACGTCCTCTTGGGGC 60.359 66.667 0.00 0.00 36.08 5.80
855 925 2.535934 TCCAACATTTATCGCAACGC 57.464 45.000 0.00 0.00 0.00 4.84
856 926 4.670621 GCTAATCCAACATTTATCGCAACG 59.329 41.667 0.00 0.00 0.00 4.10
857 927 4.976116 GGCTAATCCAACATTTATCGCAAC 59.024 41.667 0.00 0.00 34.01 4.17
858 928 4.642437 TGGCTAATCCAACATTTATCGCAA 59.358 37.500 0.00 0.00 43.21 4.85
859 929 4.203226 TGGCTAATCCAACATTTATCGCA 58.797 39.130 0.00 0.00 43.21 5.10
860 930 4.829064 TGGCTAATCCAACATTTATCGC 57.171 40.909 0.00 0.00 43.21 4.58
882 952 0.604780 CACTGACTGGAGCAACCTGG 60.605 60.000 10.44 0.00 41.11 4.45
898 968 3.000727 GTTTATAGGCACGAGCAACACT 58.999 45.455 7.26 0.00 44.61 3.55
899 969 2.095372 GGTTTATAGGCACGAGCAACAC 59.905 50.000 7.26 0.00 44.61 3.32
900 970 2.352388 GGTTTATAGGCACGAGCAACA 58.648 47.619 7.26 0.00 44.61 3.33
901 971 1.326548 CGGTTTATAGGCACGAGCAAC 59.673 52.381 7.26 1.84 44.61 4.17
905 975 1.213094 CCGCGGTTTATAGGCACGAG 61.213 60.000 19.50 0.00 0.00 4.18
963 1034 1.213013 GACGAGCCGTGTGATCTGT 59.787 57.895 4.94 0.00 41.37 3.41
1014 1085 1.832167 GCCGAGAGCTGGGAGAGAT 60.832 63.158 2.47 0.00 38.99 2.75
1097 1171 1.226547 GCGACGAGAGAGAGCCAAG 60.227 63.158 0.00 0.00 0.00 3.61
1156 1231 1.952133 TTCACCTGCACGTACGCAC 60.952 57.895 16.72 8.27 36.86 5.34
1330 1414 4.202934 TGTCCTCCCCCTATATGATGATGT 60.203 45.833 0.00 0.00 0.00 3.06
1337 1421 4.081642 CGTACAATGTCCTCCCCCTATATG 60.082 50.000 0.00 0.00 0.00 1.78
1338 1422 4.094476 CGTACAATGTCCTCCCCCTATAT 58.906 47.826 0.00 0.00 0.00 0.86
1339 1423 3.503365 CGTACAATGTCCTCCCCCTATA 58.497 50.000 0.00 0.00 0.00 1.31
1347 1431 1.656652 AGCATGCGTACAATGTCCTC 58.343 50.000 13.01 0.00 0.00 3.71
1436 1533 1.810030 GCTGTCGTCCGACCATTCC 60.810 63.158 16.39 0.00 43.97 3.01
1467 1564 4.695231 CCAGTCGCCGTCGTCGTT 62.695 66.667 0.71 0.00 36.96 3.85
1535 1635 3.743886 CGCAAGAAAAGACGGGTAAATC 58.256 45.455 0.00 0.00 43.02 2.17
1537 1637 1.264826 GCGCAAGAAAAGACGGGTAAA 59.735 47.619 0.30 0.00 43.02 2.01
1555 1655 2.887568 GATCTGTCTGCCGGTGCG 60.888 66.667 1.90 0.00 41.78 5.34
1583 1683 1.850441 CGCTGCAAAAGAAGCATATGC 59.150 47.619 20.36 20.36 41.82 3.14
1584 1684 1.850441 GCGCTGCAAAAGAAGCATATG 59.150 47.619 0.00 0.00 41.82 1.78
1585 1685 1.202336 GGCGCTGCAAAAGAAGCATAT 60.202 47.619 7.64 0.00 41.82 1.78
1669 1793 6.294731 GCTTCTATTGCCTCTCAAAGGAAAAA 60.295 38.462 0.00 0.00 46.48 1.94
1677 1819 6.714810 TGTTAAAAGCTTCTATTGCCTCTCAA 59.285 34.615 0.00 0.00 39.32 3.02
1689 1832 8.353423 ACATGGTGAATATGTTAAAAGCTTCT 57.647 30.769 0.00 0.00 35.32 2.85
1763 1910 2.689471 TGTGCTGAATGCTTCTTTGTGT 59.311 40.909 0.00 0.00 43.37 3.72
1784 1931 0.320946 TGCCTACGTTTTTAGCGGCT 60.321 50.000 7.98 7.98 38.33 5.52
1787 1934 3.733024 TCAATGCCTACGTTTTTAGCG 57.267 42.857 0.00 0.00 0.00 4.26
1829 1976 2.220653 TGGGCAGCAATTTAGAAGCT 57.779 45.000 0.00 0.00 39.63 3.74
1830 1977 3.531934 AATGGGCAGCAATTTAGAAGC 57.468 42.857 0.00 0.00 0.00 3.86
1831 1978 4.824289 ACAAATGGGCAGCAATTTAGAAG 58.176 39.130 5.27 0.00 0.00 2.85
1832 1979 4.888326 ACAAATGGGCAGCAATTTAGAA 57.112 36.364 5.27 0.00 0.00 2.10
1833 1980 5.893255 AGATACAAATGGGCAGCAATTTAGA 59.107 36.000 5.27 0.00 0.00 2.10
1834 1981 6.152932 AGATACAAATGGGCAGCAATTTAG 57.847 37.500 5.27 4.00 0.00 1.85
1836 1983 5.046448 TGAAGATACAAATGGGCAGCAATTT 60.046 36.000 0.00 0.00 0.00 1.82
1837 1984 4.467082 TGAAGATACAAATGGGCAGCAATT 59.533 37.500 0.00 0.00 0.00 2.32
1842 1989 4.209538 TGGATGAAGATACAAATGGGCAG 58.790 43.478 0.00 0.00 0.00 4.85
1845 1992 6.780457 AGTTTGGATGAAGATACAAATGGG 57.220 37.500 0.00 0.00 43.07 4.00
1892 2040 5.050227 CCCACTGCATTACAACAACAAATTG 60.050 40.000 0.00 0.00 41.98 2.32
1897 2045 1.339610 GCCCACTGCATTACAACAACA 59.660 47.619 0.00 0.00 40.77 3.33
1990 2141 3.506067 CGTGGAAACTAATTTTGCTCCCT 59.494 43.478 0.00 0.00 36.51 4.20
2011 2162 1.728971 GGATTCACTGTCTCACTTGCG 59.271 52.381 0.00 0.00 0.00 4.85
2036 2187 0.963962 AGGCAAATCACTGTGCTTGG 59.036 50.000 18.11 8.86 40.70 3.61
2043 2194 2.749621 GGGTAACAGAGGCAAATCACTG 59.250 50.000 0.00 0.00 39.74 3.66
2087 2238 9.122779 GAGGTAGTACTAGTTATGTTCTCACAT 57.877 37.037 1.87 0.00 46.07 3.21
2105 2256 2.093341 GCATTTTGGGACGGAGGTAGTA 60.093 50.000 0.00 0.00 0.00 1.82
2106 2257 1.339727 GCATTTTGGGACGGAGGTAGT 60.340 52.381 0.00 0.00 0.00 2.73
2107 2258 1.339631 TGCATTTTGGGACGGAGGTAG 60.340 52.381 0.00 0.00 0.00 3.18
2108 2259 0.693622 TGCATTTTGGGACGGAGGTA 59.306 50.000 0.00 0.00 0.00 3.08
2109 2260 0.178975 TTGCATTTTGGGACGGAGGT 60.179 50.000 0.00 0.00 0.00 3.85
2110 2261 0.527565 CTTGCATTTTGGGACGGAGG 59.472 55.000 0.00 0.00 0.00 4.30
2111 2262 1.200020 GTCTTGCATTTTGGGACGGAG 59.800 52.381 0.00 0.00 0.00 4.63
2112 2263 1.243902 GTCTTGCATTTTGGGACGGA 58.756 50.000 0.00 0.00 0.00 4.69
2113 2264 0.243636 GGTCTTGCATTTTGGGACGG 59.756 55.000 0.00 0.00 0.00 4.79
2114 2265 0.958091 TGGTCTTGCATTTTGGGACG 59.042 50.000 0.00 0.00 0.00 4.79
2115 2266 3.683365 AATGGTCTTGCATTTTGGGAC 57.317 42.857 0.00 0.00 0.00 4.46
2116 2267 4.703379 AAAATGGTCTTGCATTTTGGGA 57.297 36.364 0.00 0.00 38.91 4.37
2117 2268 4.579753 ACAAAAATGGTCTTGCATTTTGGG 59.420 37.500 18.53 7.46 39.87 4.12
2118 2269 5.296283 TGACAAAAATGGTCTTGCATTTTGG 59.704 36.000 18.53 8.48 39.87 3.28
2119 2270 6.360844 TGACAAAAATGGTCTTGCATTTTG 57.639 33.333 14.68 14.68 39.87 2.44
2120 2271 6.998968 TTGACAAAAATGGTCTTGCATTTT 57.001 29.167 0.00 0.00 41.18 1.82
2121 2272 6.998968 TTTGACAAAAATGGTCTTGCATTT 57.001 29.167 0.00 0.00 36.26 2.32
2122 2273 6.998968 TTTTGACAAAAATGGTCTTGCATT 57.001 29.167 10.92 0.00 36.26 3.56
2123 2274 6.998968 TTTTTGACAAAAATGGTCTTGCAT 57.001 29.167 19.67 0.00 35.57 3.96
2124 2275 6.998968 ATTTTTGACAAAAATGGTCTTGCA 57.001 29.167 29.31 7.30 46.30 4.08
2125 2276 7.249858 ACAATTTTTGACAAAAATGGTCTTGC 58.750 30.769 29.05 0.00 46.82 4.01
2145 2296 8.899771 CCGTCCCAAAATACTTATAAGACAATT 58.100 33.333 19.38 11.74 0.00 2.32
2146 2297 8.269317 TCCGTCCCAAAATACTTATAAGACAAT 58.731 33.333 19.38 6.69 0.00 2.71
2147 2298 7.622713 TCCGTCCCAAAATACTTATAAGACAA 58.377 34.615 19.38 4.65 0.00 3.18
2148 2299 7.185318 TCCGTCCCAAAATACTTATAAGACA 57.815 36.000 19.38 6.73 0.00 3.41
2149 2300 7.172703 CCATCCGTCCCAAAATACTTATAAGAC 59.827 40.741 19.38 2.94 0.00 3.01
2150 2301 7.071447 TCCATCCGTCCCAAAATACTTATAAGA 59.929 37.037 19.38 3.51 0.00 2.10
2151 2302 7.221450 TCCATCCGTCCCAAAATACTTATAAG 58.779 38.462 11.05 11.05 0.00 1.73
2152 2303 7.139287 TCCATCCGTCCCAAAATACTTATAA 57.861 36.000 0.00 0.00 0.00 0.98
2153 2304 6.328148 ACTCCATCCGTCCCAAAATACTTATA 59.672 38.462 0.00 0.00 0.00 0.98
2154 2305 5.132144 ACTCCATCCGTCCCAAAATACTTAT 59.868 40.000 0.00 0.00 0.00 1.73
2155 2306 4.472108 ACTCCATCCGTCCCAAAATACTTA 59.528 41.667 0.00 0.00 0.00 2.24
2156 2307 3.265995 ACTCCATCCGTCCCAAAATACTT 59.734 43.478 0.00 0.00 0.00 2.24
2157 2308 2.844348 ACTCCATCCGTCCCAAAATACT 59.156 45.455 0.00 0.00 0.00 2.12
2158 2309 3.277142 ACTCCATCCGTCCCAAAATAC 57.723 47.619 0.00 0.00 0.00 1.89
2159 2310 4.656575 TCATACTCCATCCGTCCCAAAATA 59.343 41.667 0.00 0.00 0.00 1.40
2160 2311 3.458118 TCATACTCCATCCGTCCCAAAAT 59.542 43.478 0.00 0.00 0.00 1.82
2161 2312 2.841266 TCATACTCCATCCGTCCCAAAA 59.159 45.455 0.00 0.00 0.00 2.44
2162 2313 2.434336 CTCATACTCCATCCGTCCCAAA 59.566 50.000 0.00 0.00 0.00 3.28
2163 2314 2.039418 CTCATACTCCATCCGTCCCAA 58.961 52.381 0.00 0.00 0.00 4.12
2164 2315 1.216930 TCTCATACTCCATCCGTCCCA 59.783 52.381 0.00 0.00 0.00 4.37
2165 2316 1.996798 TCTCATACTCCATCCGTCCC 58.003 55.000 0.00 0.00 0.00 4.46
2166 2317 3.129638 GCTATCTCATACTCCATCCGTCC 59.870 52.174 0.00 0.00 0.00 4.79
2167 2318 3.129638 GGCTATCTCATACTCCATCCGTC 59.870 52.174 0.00 0.00 0.00 4.79
2168 2319 3.093057 GGCTATCTCATACTCCATCCGT 58.907 50.000 0.00 0.00 0.00 4.69
2169 2320 2.428890 GGGCTATCTCATACTCCATCCG 59.571 54.545 0.00 0.00 0.00 4.18
2170 2321 3.196685 GTGGGCTATCTCATACTCCATCC 59.803 52.174 0.00 0.00 0.00 3.51
2171 2322 3.196685 GGTGGGCTATCTCATACTCCATC 59.803 52.174 0.00 0.00 0.00 3.51
2172 2323 3.177228 GGTGGGCTATCTCATACTCCAT 58.823 50.000 0.00 0.00 0.00 3.41
2173 2324 2.180086 AGGTGGGCTATCTCATACTCCA 59.820 50.000 0.00 0.00 0.00 3.86
2174 2325 2.564947 CAGGTGGGCTATCTCATACTCC 59.435 54.545 0.00 0.00 0.00 3.85
2175 2326 3.501349 TCAGGTGGGCTATCTCATACTC 58.499 50.000 0.00 0.00 0.00 2.59
2176 2327 3.619900 TCAGGTGGGCTATCTCATACT 57.380 47.619 0.00 0.00 0.00 2.12
2177 2328 4.899352 AATCAGGTGGGCTATCTCATAC 57.101 45.455 0.00 0.00 0.00 2.39
2178 2329 5.248477 GGTTAATCAGGTGGGCTATCTCATA 59.752 44.000 0.00 0.00 0.00 2.15
2179 2330 4.042187 GGTTAATCAGGTGGGCTATCTCAT 59.958 45.833 0.00 0.00 0.00 2.90
2187 2338 2.215942 ACTTGGTTAATCAGGTGGGC 57.784 50.000 2.17 0.00 0.00 5.36
2225 2376 2.346766 ACATCCTGCACAGTTGAACA 57.653 45.000 0.00 0.00 0.00 3.18
2229 2380 3.057386 TGCATAAACATCCTGCACAGTTG 60.057 43.478 0.00 0.00 40.75 3.16
2233 2384 4.804868 AATTGCATAAACATCCTGCACA 57.195 36.364 0.00 0.00 44.94 4.57
2268 2425 5.874093 AGAATTCACTGTCTGAGGTTTCAT 58.126 37.500 8.44 0.00 31.68 2.57
2430 2593 3.635373 CCACAAGCTTGGATCAGCAATAT 59.365 43.478 29.18 1.60 42.84 1.28
2435 2598 0.610232 ACCCACAAGCTTGGATCAGC 60.610 55.000 29.18 0.00 39.24 4.26
2436 2599 1.542915 CAACCCACAAGCTTGGATCAG 59.457 52.381 29.18 15.29 39.24 2.90
2443 2606 0.106015 AGGCTTCAACCCACAAGCTT 60.106 50.000 0.00 0.00 43.89 3.74
2461 2625 1.163554 GCCAGCCTCAAAAGAGTGAG 58.836 55.000 0.00 0.00 43.98 3.51
2516 2680 4.455070 TCTATCGGAGGAGAAGAATCCA 57.545 45.455 0.00 0.00 42.26 3.41
2669 2833 5.045012 ACAGTGTGGCTCATATCATGAAT 57.955 39.130 0.00 0.00 39.11 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.