Multiple sequence alignment - TraesCS2D01G204300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G204300 chr2D 100.000 3852 0 0 1 3852 155981283 155977432 0.000000e+00 7114.0
1 TraesCS2D01G204300 chr2D 95.652 322 12 2 1 321 152669744 152669424 2.050000e-142 516.0
2 TraesCS2D01G204300 chr2D 94.345 336 16 2 1 335 639637332 639637665 2.650000e-141 512.0
3 TraesCS2D01G204300 chr2D 77.626 219 33 14 370 585 498333392 498333597 6.760000e-23 119.0
4 TraesCS2D01G204300 chr2B 93.351 1519 65 19 1330 2816 214005817 214004303 0.000000e+00 2213.0
5 TraesCS2D01G204300 chr2B 91.407 675 31 4 3181 3852 214001529 214000879 0.000000e+00 900.0
6 TraesCS2D01G204300 chr2B 93.333 585 15 9 697 1263 214006394 214005816 0.000000e+00 843.0
7 TraesCS2D01G204300 chr2B 91.760 267 17 4 319 585 214007121 214006860 2.190000e-97 366.0
8 TraesCS2D01G204300 chr2A 93.891 1375 60 15 1596 2967 166085540 166084187 0.000000e+00 2052.0
9 TraesCS2D01G204300 chr2A 91.317 691 26 15 791 1461 166086430 166085754 0.000000e+00 913.0
10 TraesCS2D01G204300 chr2A 86.517 623 48 14 1217 1828 166097241 166096644 0.000000e+00 652.0
11 TraesCS2D01G204300 chr2A 90.464 388 33 3 835 1218 166106124 166105737 3.430000e-140 508.0
12 TraesCS2D01G204300 chr2A 88.506 435 23 3 3419 3852 166083724 166083316 5.750000e-138 501.0
13 TraesCS2D01G204300 chr2A 91.129 248 21 1 338 585 166108802 166108556 6.170000e-88 335.0
14 TraesCS2D01G204300 chr2A 91.489 141 6 2 1463 1597 166085721 166085581 5.080000e-44 189.0
15 TraesCS2D01G204300 chr2A 86.747 83 8 2 3210 3289 166083866 166083784 5.300000e-14 89.8
16 TraesCS2D01G204300 chr2A 96.078 51 1 1 629 678 166086494 166086444 8.870000e-12 82.4
17 TraesCS2D01G204300 chr4D 96.552 319 10 1 1 318 88519539 88519221 9.480000e-146 527.0
18 TraesCS2D01G204300 chr5D 95.938 320 11 2 1 319 134910166 134910484 5.700000e-143 518.0
19 TraesCS2D01G204300 chr5D 95.925 319 12 1 1 318 87570004 87570322 2.050000e-142 516.0
20 TraesCS2D01G204300 chr5D 95.611 319 12 2 1 318 442704418 442704735 9.550000e-141 510.0
21 TraesCS2D01G204300 chr5D 81.868 182 28 4 406 585 502700007 502700185 8.620000e-32 148.0
22 TraesCS2D01G204300 chr3D 95.912 318 12 1 2 318 366270075 366270392 7.380000e-142 514.0
23 TraesCS2D01G204300 chr3D 97.059 34 1 0 584 617 506698361 506698394 1.490000e-04 58.4
24 TraesCS2D01G204300 chr6D 95.625 320 12 2 1 319 106896701 106896383 2.650000e-141 512.0
25 TraesCS2D01G204300 chr6D 77.778 216 37 10 372 585 440730568 440730774 5.230000e-24 122.0
26 TraesCS2D01G204300 chr1D 95.611 319 13 1 1 318 355496132 355496450 9.550000e-141 510.0
27 TraesCS2D01G204300 chr3B 82.051 234 29 6 364 585 432264137 432263905 1.830000e-43 187.0
28 TraesCS2D01G204300 chr3A 81.463 205 26 5 384 585 145653318 145653123 1.430000e-34 158.0
29 TraesCS2D01G204300 chr1A 81.081 185 33 2 401 585 515290381 515290199 3.100000e-31 147.0
30 TraesCS2D01G204300 chr1A 77.833 203 40 5 384 585 584089105 584088907 1.880000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G204300 chr2D 155977432 155981283 3851 True 7114.000000 7114 100.00000 1 3852 1 chr2D.!!$R2 3851
1 TraesCS2D01G204300 chr2B 214000879 214007121 6242 True 1080.500000 2213 92.46275 319 3852 4 chr2B.!!$R1 3533
2 TraesCS2D01G204300 chr2A 166096644 166097241 597 True 652.000000 652 86.51700 1217 1828 1 chr2A.!!$R1 611
3 TraesCS2D01G204300 chr2A 166083316 166086494 3178 True 637.866667 2052 91.33800 629 3852 6 chr2A.!!$R2 3223
4 TraesCS2D01G204300 chr2A 166105737 166108802 3065 True 421.500000 508 90.79650 338 1218 2 chr2A.!!$R3 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.108329 CCCTGCGTCGGTAACTTCAT 60.108 55.0 0.00 0.00 0.00 2.57 F
70 71 0.170784 GACGAAACTCTCCCTCGACC 59.829 60.0 0.00 0.00 36.45 4.79 F
238 239 0.178970 AGGGTACGTGGACACACTCT 60.179 55.0 0.00 0.00 45.50 3.24 F
437 438 0.179073 CGTCACCATCTCCACCATCC 60.179 60.0 0.00 0.00 0.00 3.51 F
1295 3776 0.318441 TCTTGTTCAGGGTGAGCGAG 59.682 55.0 2.42 2.42 39.57 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 3995 0.108804 TTCGTCGACCTGGAATCTGC 60.109 55.000 10.58 0.0 0.00 4.26 R
1994 4555 1.745489 AGCGAATTTGGCCGAGGAC 60.745 57.895 0.00 0.0 0.00 3.85 R
2104 4665 1.728971 CATCTGAAGACGCCTTGTGAC 59.271 52.381 0.00 0.0 31.62 3.67 R
2303 4864 2.618816 CCATGCAAGCCTCTTTACCTGA 60.619 50.000 0.00 0.0 0.00 3.86 R
2989 5911 0.108424 GCTCAGAGTTCTGCGATGGT 60.108 55.000 4.25 0.0 43.46 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.263540 GAAGCCCTGCGTCGGTAA 59.736 61.111 0.00 0.00 0.00 2.85
19 20 2.047560 AAGCCCTGCGTCGGTAAC 60.048 61.111 0.00 0.00 0.00 2.50
20 21 2.502692 GAAGCCCTGCGTCGGTAACT 62.503 60.000 0.00 0.00 0.00 2.24
21 22 2.047560 GCCCTGCGTCGGTAACTT 60.048 61.111 0.00 0.00 0.00 2.66
22 23 2.098831 GCCCTGCGTCGGTAACTTC 61.099 63.158 0.00 0.00 0.00 3.01
23 24 1.290955 CCCTGCGTCGGTAACTTCA 59.709 57.895 0.00 0.00 0.00 3.02
24 25 0.108329 CCCTGCGTCGGTAACTTCAT 60.108 55.000 0.00 0.00 0.00 2.57
25 26 1.278238 CCTGCGTCGGTAACTTCATC 58.722 55.000 0.00 0.00 0.00 2.92
26 27 1.403647 CCTGCGTCGGTAACTTCATCA 60.404 52.381 0.00 0.00 0.00 3.07
27 28 2.540515 CTGCGTCGGTAACTTCATCAT 58.459 47.619 0.00 0.00 0.00 2.45
28 29 2.535984 CTGCGTCGGTAACTTCATCATC 59.464 50.000 0.00 0.00 0.00 2.92
29 30 2.094442 TGCGTCGGTAACTTCATCATCA 60.094 45.455 0.00 0.00 0.00 3.07
30 31 2.281762 GCGTCGGTAACTTCATCATCAC 59.718 50.000 0.00 0.00 0.00 3.06
31 32 2.858344 CGTCGGTAACTTCATCATCACC 59.142 50.000 0.00 0.00 0.00 4.02
33 34 1.593006 CGGTAACTTCATCATCACCGC 59.407 52.381 0.00 0.00 41.96 5.68
34 35 1.940613 GGTAACTTCATCATCACCGCC 59.059 52.381 0.00 0.00 0.00 6.13
35 36 2.627945 GTAACTTCATCATCACCGCCA 58.372 47.619 0.00 0.00 0.00 5.69
36 37 2.198827 AACTTCATCATCACCGCCAA 57.801 45.000 0.00 0.00 0.00 4.52
37 38 1.453155 ACTTCATCATCACCGCCAAC 58.547 50.000 0.00 0.00 0.00 3.77
38 39 1.271325 ACTTCATCATCACCGCCAACA 60.271 47.619 0.00 0.00 0.00 3.33
39 40 1.131126 CTTCATCATCACCGCCAACAC 59.869 52.381 0.00 0.00 0.00 3.32
40 41 1.018752 TCATCATCACCGCCAACACG 61.019 55.000 0.00 0.00 0.00 4.49
41 42 2.398554 ATCATCACCGCCAACACGC 61.399 57.895 0.00 0.00 0.00 5.34
42 43 4.101790 CATCACCGCCAACACGCC 62.102 66.667 0.00 0.00 0.00 5.68
66 67 3.490800 GTACTGACGAAACTCTCCCTC 57.509 52.381 0.00 0.00 0.00 4.30
67 68 0.882474 ACTGACGAAACTCTCCCTCG 59.118 55.000 0.00 0.00 38.53 4.63
68 69 1.166129 CTGACGAAACTCTCCCTCGA 58.834 55.000 0.00 0.00 36.45 4.04
69 70 0.879765 TGACGAAACTCTCCCTCGAC 59.120 55.000 0.00 0.00 36.45 4.20
70 71 0.170784 GACGAAACTCTCCCTCGACC 59.829 60.000 0.00 0.00 36.45 4.79
71 72 0.251253 ACGAAACTCTCCCTCGACCT 60.251 55.000 0.00 0.00 36.45 3.85
72 73 0.452585 CGAAACTCTCCCTCGACCTC 59.547 60.000 0.00 0.00 34.52 3.85
73 74 1.546961 GAAACTCTCCCTCGACCTCA 58.453 55.000 0.00 0.00 0.00 3.86
74 75 1.474879 GAAACTCTCCCTCGACCTCAG 59.525 57.143 0.00 0.00 0.00 3.35
75 76 0.968393 AACTCTCCCTCGACCTCAGC 60.968 60.000 0.00 0.00 0.00 4.26
76 77 1.077068 CTCTCCCTCGACCTCAGCT 60.077 63.158 0.00 0.00 0.00 4.24
77 78 1.379176 TCTCCCTCGACCTCAGCTG 60.379 63.158 7.63 7.63 0.00 4.24
78 79 2.363018 TCCCTCGACCTCAGCTGG 60.363 66.667 15.13 0.12 0.00 4.85
79 80 2.363018 CCCTCGACCTCAGCTGGA 60.363 66.667 15.13 1.28 0.00 3.86
80 81 1.760086 CCCTCGACCTCAGCTGGAT 60.760 63.158 15.13 0.00 0.00 3.41
81 82 1.739049 CCTCGACCTCAGCTGGATC 59.261 63.158 15.13 8.21 0.00 3.36
82 83 0.754957 CCTCGACCTCAGCTGGATCT 60.755 60.000 15.13 0.00 0.00 2.75
83 84 1.477740 CCTCGACCTCAGCTGGATCTA 60.478 57.143 15.13 0.66 0.00 1.98
84 85 1.879380 CTCGACCTCAGCTGGATCTAG 59.121 57.143 15.13 0.86 0.00 2.43
85 86 1.490910 TCGACCTCAGCTGGATCTAGA 59.509 52.381 15.13 0.00 0.00 2.43
86 87 2.092375 TCGACCTCAGCTGGATCTAGAA 60.092 50.000 15.13 0.00 0.00 2.10
87 88 2.293122 CGACCTCAGCTGGATCTAGAAG 59.707 54.545 15.13 0.42 0.00 2.85
88 89 3.295973 GACCTCAGCTGGATCTAGAAGT 58.704 50.000 15.13 0.00 0.00 3.01
89 90 3.704061 GACCTCAGCTGGATCTAGAAGTT 59.296 47.826 15.13 0.00 0.00 2.66
90 91 3.704061 ACCTCAGCTGGATCTAGAAGTTC 59.296 47.826 15.13 0.00 0.00 3.01
91 92 3.243367 CCTCAGCTGGATCTAGAAGTTCG 60.243 52.174 15.13 0.00 0.00 3.95
92 93 3.621558 TCAGCTGGATCTAGAAGTTCGA 58.378 45.455 15.13 0.00 0.00 3.71
93 94 3.629855 TCAGCTGGATCTAGAAGTTCGAG 59.370 47.826 15.13 6.66 0.00 4.04
94 95 2.955660 AGCTGGATCTAGAAGTTCGAGG 59.044 50.000 10.75 0.65 0.00 4.63
95 96 2.035321 GCTGGATCTAGAAGTTCGAGGG 59.965 54.545 10.75 0.00 0.00 4.30
96 97 3.556999 CTGGATCTAGAAGTTCGAGGGA 58.443 50.000 12.40 3.51 0.00 4.20
97 98 3.288964 TGGATCTAGAAGTTCGAGGGAC 58.711 50.000 12.40 4.54 0.00 4.46
98 99 2.291190 GGATCTAGAAGTTCGAGGGACG 59.709 54.545 12.40 0.00 44.09 4.79
99 100 2.486472 TCTAGAAGTTCGAGGGACGT 57.514 50.000 12.40 0.00 43.13 4.34
100 101 2.354259 TCTAGAAGTTCGAGGGACGTC 58.646 52.381 7.13 7.13 43.13 4.34
101 102 2.082231 CTAGAAGTTCGAGGGACGTCA 58.918 52.381 18.91 0.00 43.13 4.35
102 103 0.597072 AGAAGTTCGAGGGACGTCAC 59.403 55.000 18.91 15.14 43.13 3.67
103 104 0.388263 GAAGTTCGAGGGACGTCACC 60.388 60.000 15.74 14.36 43.13 4.02
104 105 2.126580 GTTCGAGGGACGTCACCG 60.127 66.667 15.74 17.59 43.13 4.94
105 106 2.281692 TTCGAGGGACGTCACCGA 60.282 61.111 22.07 22.07 43.13 4.69
106 107 2.330372 TTCGAGGGACGTCACCGAG 61.330 63.158 23.73 17.34 43.13 4.63
107 108 4.477975 CGAGGGACGTCACCGAGC 62.478 72.222 15.74 8.48 37.88 5.03
108 109 3.063084 GAGGGACGTCACCGAGCT 61.063 66.667 15.74 0.00 37.88 4.09
109 110 3.343788 GAGGGACGTCACCGAGCTG 62.344 68.421 15.74 0.00 37.88 4.24
110 111 3.371063 GGGACGTCACCGAGCTGA 61.371 66.667 18.91 0.00 37.88 4.26
111 112 2.649034 GGACGTCACCGAGCTGAA 59.351 61.111 18.91 0.00 37.88 3.02
112 113 1.733399 GGACGTCACCGAGCTGAAC 60.733 63.158 18.91 0.00 37.88 3.18
113 114 2.050351 ACGTCACCGAGCTGAACG 60.050 61.111 0.00 0.00 37.88 3.95
114 115 2.050351 CGTCACCGAGCTGAACGT 60.050 61.111 0.00 0.00 35.63 3.99
115 116 2.365068 CGTCACCGAGCTGAACGTG 61.365 63.158 0.00 0.00 35.63 4.49
116 117 1.299926 GTCACCGAGCTGAACGTGT 60.300 57.895 0.00 0.00 0.00 4.49
117 118 1.299850 TCACCGAGCTGAACGTGTG 60.300 57.895 0.00 0.00 35.24 3.82
118 119 2.661866 ACCGAGCTGAACGTGTGC 60.662 61.111 0.00 0.00 0.00 4.57
119 120 3.767230 CCGAGCTGAACGTGTGCG 61.767 66.667 0.00 0.00 44.93 5.34
120 121 3.767230 CGAGCTGAACGTGTGCGG 61.767 66.667 0.00 0.00 43.45 5.69
121 122 2.355837 GAGCTGAACGTGTGCGGA 60.356 61.111 0.00 0.00 43.45 5.54
122 123 1.738099 GAGCTGAACGTGTGCGGAT 60.738 57.895 0.00 0.00 43.45 4.18
123 124 1.687494 GAGCTGAACGTGTGCGGATC 61.687 60.000 0.00 0.00 43.45 3.36
124 125 3.071459 GCTGAACGTGTGCGGATCG 62.071 63.158 0.00 3.40 43.45 3.69
135 136 4.907034 CGGATCGCGGAGGTGTCG 62.907 72.222 6.13 0.00 0.00 4.35
136 137 3.823330 GGATCGCGGAGGTGTCGT 61.823 66.667 6.13 0.00 0.00 4.34
137 138 2.579787 GATCGCGGAGGTGTCGTG 60.580 66.667 6.13 0.00 39.20 4.35
138 139 4.796231 ATCGCGGAGGTGTCGTGC 62.796 66.667 6.13 0.00 37.94 5.34
142 143 3.103911 CGGAGGTGTCGTGCGTTC 61.104 66.667 0.00 0.00 0.00 3.95
143 144 3.103911 GGAGGTGTCGTGCGTTCG 61.104 66.667 0.00 0.00 0.00 3.95
144 145 3.103911 GAGGTGTCGTGCGTTCGG 61.104 66.667 2.16 0.00 0.00 4.30
145 146 3.836176 GAGGTGTCGTGCGTTCGGT 62.836 63.158 2.16 0.00 0.00 4.69
146 147 2.050168 GGTGTCGTGCGTTCGGTA 60.050 61.111 2.16 0.00 0.00 4.02
147 148 2.367344 GGTGTCGTGCGTTCGGTAC 61.367 63.158 2.16 0.00 0.00 3.34
148 149 1.370900 GTGTCGTGCGTTCGGTACT 60.371 57.895 0.00 0.00 0.00 2.73
149 150 0.936297 GTGTCGTGCGTTCGGTACTT 60.936 55.000 0.00 0.00 0.00 2.24
150 151 0.935831 TGTCGTGCGTTCGGTACTTG 60.936 55.000 0.00 0.00 0.00 3.16
151 152 0.661187 GTCGTGCGTTCGGTACTTGA 60.661 55.000 0.00 0.00 0.00 3.02
152 153 0.241749 TCGTGCGTTCGGTACTTGAT 59.758 50.000 0.00 0.00 0.00 2.57
153 154 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
154 155 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
155 156 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
156 157 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
157 158 1.986698 CGTTCGGTACTTGATCGGTT 58.013 50.000 9.70 0.00 30.29 4.44
158 159 1.916000 CGTTCGGTACTTGATCGGTTC 59.084 52.381 9.70 0.00 30.29 3.62
159 160 1.916000 GTTCGGTACTTGATCGGTTCG 59.084 52.381 0.00 3.20 30.29 3.95
160 161 1.452110 TCGGTACTTGATCGGTTCGA 58.548 50.000 0.00 10.23 41.13 3.71
186 187 2.915738 AGACGTCGACTACATCAACC 57.084 50.000 14.70 0.00 0.00 3.77
187 188 1.129998 AGACGTCGACTACATCAACCG 59.870 52.381 14.70 0.00 0.00 4.44
188 189 0.455633 ACGTCGACTACATCAACCGC 60.456 55.000 14.70 0.00 0.00 5.68
189 190 1.461317 CGTCGACTACATCAACCGCG 61.461 60.000 14.70 0.00 0.00 6.46
190 191 0.455633 GTCGACTACATCAACCGCGT 60.456 55.000 8.70 0.00 0.00 6.01
191 192 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
192 193 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
193 194 1.580704 CGACTACATCAACCGCGTTAC 59.419 52.381 4.92 0.00 0.00 2.50
194 195 2.730090 CGACTACATCAACCGCGTTACT 60.730 50.000 4.92 0.00 0.00 2.24
195 196 3.248266 GACTACATCAACCGCGTTACTT 58.752 45.455 4.92 0.00 0.00 2.24
196 197 4.414852 GACTACATCAACCGCGTTACTTA 58.585 43.478 4.92 0.00 0.00 2.24
197 198 4.808558 ACTACATCAACCGCGTTACTTAA 58.191 39.130 4.92 0.00 0.00 1.85
198 199 4.622740 ACTACATCAACCGCGTTACTTAAC 59.377 41.667 4.92 0.00 0.00 2.01
209 210 3.800929 GTTACTTAACGCTTCCGCTTT 57.199 42.857 0.00 0.00 38.22 3.51
210 211 3.729684 GTTACTTAACGCTTCCGCTTTC 58.270 45.455 0.00 0.00 38.22 2.62
211 212 0.788391 ACTTAACGCTTCCGCTTTCG 59.212 50.000 0.00 0.00 38.22 3.46
229 230 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
231 232 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
232 233 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
233 234 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
234 235 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
235 236 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
236 237 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
237 238 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
238 239 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
239 240 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
240 241 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
241 242 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
242 243 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
243 244 2.657237 GTGGACACACTCTCCCCG 59.343 66.667 0.00 0.00 44.29 5.73
244 245 3.311110 TGGACACACTCTCCCCGC 61.311 66.667 0.00 0.00 0.00 6.13
245 246 2.997897 GGACACACTCTCCCCGCT 60.998 66.667 0.00 0.00 0.00 5.52
246 247 2.574399 GACACACTCTCCCCGCTC 59.426 66.667 0.00 0.00 0.00 5.03
247 248 3.343788 GACACACTCTCCCCGCTCG 62.344 68.421 0.00 0.00 0.00 5.03
248 249 3.374402 CACACTCTCCCCGCTCGT 61.374 66.667 0.00 0.00 0.00 4.18
249 250 2.600769 ACACTCTCCCCGCTCGTT 60.601 61.111 0.00 0.00 0.00 3.85
250 251 2.125912 CACTCTCCCCGCTCGTTG 60.126 66.667 0.00 0.00 0.00 4.10
251 252 4.070552 ACTCTCCCCGCTCGTTGC 62.071 66.667 0.00 0.00 38.57 4.17
252 253 3.764466 CTCTCCCCGCTCGTTGCT 61.764 66.667 2.29 0.00 40.11 3.91
253 254 2.361992 TCTCCCCGCTCGTTGCTA 60.362 61.111 2.29 0.00 40.11 3.49
254 255 1.739338 CTCTCCCCGCTCGTTGCTAT 61.739 60.000 2.29 0.00 40.11 2.97
255 256 1.592669 CTCCCCGCTCGTTGCTATG 60.593 63.158 2.29 0.00 40.11 2.23
256 257 3.272334 CCCCGCTCGTTGCTATGC 61.272 66.667 2.29 0.00 40.11 3.14
257 258 2.202932 CCCGCTCGTTGCTATGCT 60.203 61.111 2.29 0.00 40.11 3.79
258 259 1.815421 CCCGCTCGTTGCTATGCTT 60.815 57.895 2.29 0.00 40.11 3.91
259 260 1.638467 CCGCTCGTTGCTATGCTTC 59.362 57.895 2.29 0.00 40.11 3.86
260 261 0.807667 CCGCTCGTTGCTATGCTTCT 60.808 55.000 2.29 0.00 40.11 2.85
261 262 0.574454 CGCTCGTTGCTATGCTTCTC 59.426 55.000 2.29 0.00 40.11 2.87
262 263 0.933796 GCTCGTTGCTATGCTTCTCC 59.066 55.000 0.00 0.00 38.95 3.71
263 264 1.472376 GCTCGTTGCTATGCTTCTCCT 60.472 52.381 0.00 0.00 38.95 3.69
264 265 2.898705 CTCGTTGCTATGCTTCTCCTT 58.101 47.619 0.00 0.00 0.00 3.36
265 266 2.606725 CTCGTTGCTATGCTTCTCCTTG 59.393 50.000 0.00 0.00 0.00 3.61
266 267 2.233676 TCGTTGCTATGCTTCTCCTTGA 59.766 45.455 0.00 0.00 0.00 3.02
267 268 3.118629 TCGTTGCTATGCTTCTCCTTGAT 60.119 43.478 0.00 0.00 0.00 2.57
268 269 4.099419 TCGTTGCTATGCTTCTCCTTGATA 59.901 41.667 0.00 0.00 0.00 2.15
269 270 4.447054 CGTTGCTATGCTTCTCCTTGATAG 59.553 45.833 0.00 0.00 0.00 2.08
270 271 5.605534 GTTGCTATGCTTCTCCTTGATAGA 58.394 41.667 0.00 0.00 0.00 1.98
271 272 6.229733 GTTGCTATGCTTCTCCTTGATAGAT 58.770 40.000 0.00 0.00 0.00 1.98
272 273 6.035368 TGCTATGCTTCTCCTTGATAGATC 57.965 41.667 0.00 0.00 0.00 2.75
273 274 5.779260 TGCTATGCTTCTCCTTGATAGATCT 59.221 40.000 0.00 0.00 0.00 2.75
274 275 6.269538 TGCTATGCTTCTCCTTGATAGATCTT 59.730 38.462 0.00 0.00 0.00 2.40
275 276 6.591062 GCTATGCTTCTCCTTGATAGATCTTG 59.409 42.308 0.00 0.00 0.00 3.02
276 277 4.701765 TGCTTCTCCTTGATAGATCTTGC 58.298 43.478 0.00 0.00 0.00 4.01
277 278 3.740321 GCTTCTCCTTGATAGATCTTGCG 59.260 47.826 0.00 0.00 0.00 4.85
278 279 4.739137 GCTTCTCCTTGATAGATCTTGCGT 60.739 45.833 0.00 0.00 0.00 5.24
279 280 4.313277 TCTCCTTGATAGATCTTGCGTG 57.687 45.455 0.00 0.00 0.00 5.34
280 281 3.954258 TCTCCTTGATAGATCTTGCGTGA 59.046 43.478 0.00 0.00 0.00 4.35
281 282 4.586421 TCTCCTTGATAGATCTTGCGTGAT 59.414 41.667 0.00 0.00 0.00 3.06
282 283 4.876125 TCCTTGATAGATCTTGCGTGATC 58.124 43.478 0.00 9.82 42.18 2.92
283 284 3.672397 CCTTGATAGATCTTGCGTGATCG 59.328 47.826 0.00 0.00 45.35 3.69
284 285 3.990318 TGATAGATCTTGCGTGATCGT 57.010 42.857 0.00 6.35 45.35 3.73
285 286 5.432885 TTGATAGATCTTGCGTGATCGTA 57.567 39.130 0.00 6.70 45.35 3.43
286 287 5.035784 TGATAGATCTTGCGTGATCGTAG 57.964 43.478 0.00 0.00 45.35 3.51
287 288 2.783828 AGATCTTGCGTGATCGTAGG 57.216 50.000 11.44 0.00 45.35 3.18
288 289 2.298610 AGATCTTGCGTGATCGTAGGA 58.701 47.619 11.44 0.00 45.35 2.94
289 290 2.688446 AGATCTTGCGTGATCGTAGGAA 59.312 45.455 11.44 0.00 45.35 3.36
290 291 3.319405 AGATCTTGCGTGATCGTAGGAAT 59.681 43.478 11.44 0.00 45.35 3.01
291 292 3.520290 TCTTGCGTGATCGTAGGAATT 57.480 42.857 0.00 0.00 35.34 2.17
292 293 3.857052 TCTTGCGTGATCGTAGGAATTT 58.143 40.909 0.00 0.00 35.34 1.82
293 294 4.250464 TCTTGCGTGATCGTAGGAATTTT 58.750 39.130 0.00 0.00 35.34 1.82
294 295 4.693566 TCTTGCGTGATCGTAGGAATTTTT 59.306 37.500 0.00 0.00 35.34 1.94
317 318 7.814264 TTTTAAAATACTACGTTCCCCAACA 57.186 32.000 0.00 0.00 32.14 3.33
323 324 4.094830 ACTACGTTCCCCAACAAGAAAT 57.905 40.909 0.00 0.00 32.14 2.17
359 360 1.039856 AGAACAACCCGCAAGCAATT 58.960 45.000 0.00 0.00 0.00 2.32
365 366 1.169661 ACCCGCAAGCAATTGTCGAA 61.170 50.000 7.40 0.00 0.00 3.71
381 382 2.860735 GTCGAAACCTCCATCTTCATCG 59.139 50.000 0.00 0.00 0.00 3.84
435 436 1.907739 CCGTCACCATCTCCACCAT 59.092 57.895 0.00 0.00 0.00 3.55
437 438 0.179073 CGTCACCATCTCCACCATCC 60.179 60.000 0.00 0.00 0.00 3.51
439 440 1.561542 GTCACCATCTCCACCATCCTT 59.438 52.381 0.00 0.00 0.00 3.36
470 471 7.668052 TCAACCAACTAGCCATACTTTGTAATT 59.332 33.333 0.00 0.00 0.00 1.40
556 557 7.269297 GTGTTCTTCGATAATTTCTTCTTGTGC 59.731 37.037 0.00 0.00 0.00 4.57
585 586 3.297830 TCATGTGTGAGTAGTTCGGTG 57.702 47.619 0.00 0.00 0.00 4.94
587 588 3.509967 TCATGTGTGAGTAGTTCGGTGAT 59.490 43.478 0.00 0.00 0.00 3.06
588 589 4.703093 TCATGTGTGAGTAGTTCGGTGATA 59.297 41.667 0.00 0.00 0.00 2.15
589 590 5.184287 TCATGTGTGAGTAGTTCGGTGATAA 59.816 40.000 0.00 0.00 0.00 1.75
590 591 5.055642 TGTGTGAGTAGTTCGGTGATAAG 57.944 43.478 0.00 0.00 0.00 1.73
591 592 3.858238 GTGTGAGTAGTTCGGTGATAAGC 59.142 47.826 0.00 0.00 0.00 3.09
592 593 3.508402 TGTGAGTAGTTCGGTGATAAGCA 59.492 43.478 0.00 0.00 0.00 3.91
593 594 4.021807 TGTGAGTAGTTCGGTGATAAGCAA 60.022 41.667 0.00 0.00 0.00 3.91
594 595 5.109903 GTGAGTAGTTCGGTGATAAGCAAT 58.890 41.667 0.00 0.00 0.00 3.56
595 596 5.581085 GTGAGTAGTTCGGTGATAAGCAATT 59.419 40.000 0.00 0.00 0.00 2.32
596 597 5.810587 TGAGTAGTTCGGTGATAAGCAATTC 59.189 40.000 0.00 0.00 0.00 2.17
597 598 5.730550 AGTAGTTCGGTGATAAGCAATTCA 58.269 37.500 0.00 0.00 0.00 2.57
600 601 5.699839 AGTTCGGTGATAAGCAATTCAAAC 58.300 37.500 0.00 0.00 0.00 2.93
601 602 5.473504 AGTTCGGTGATAAGCAATTCAAACT 59.526 36.000 0.00 0.00 0.00 2.66
602 603 6.653320 AGTTCGGTGATAAGCAATTCAAACTA 59.347 34.615 0.00 0.00 0.00 2.24
605 606 7.693952 TCGGTGATAAGCAATTCAAACTAATC 58.306 34.615 0.00 0.00 0.00 1.75
606 607 6.912591 CGGTGATAAGCAATTCAAACTAATCC 59.087 38.462 0.00 0.00 0.00 3.01
607 608 7.415095 CGGTGATAAGCAATTCAAACTAATCCA 60.415 37.037 0.00 0.00 0.00 3.41
608 609 7.917505 GGTGATAAGCAATTCAAACTAATCCAG 59.082 37.037 0.00 0.00 0.00 3.86
609 610 8.677300 GTGATAAGCAATTCAAACTAATCCAGA 58.323 33.333 0.00 0.00 0.00 3.86
625 2234 8.947115 ACTAATCCAGAAGAAAAACCGAAATAG 58.053 33.333 0.00 0.00 0.00 1.73
626 2235 6.759497 ATCCAGAAGAAAAACCGAAATAGG 57.241 37.500 0.00 0.00 37.30 2.57
629 2238 6.946009 TCCAGAAGAAAAACCGAAATAGGATT 59.054 34.615 0.00 0.00 34.73 3.01
676 2314 0.683179 TCTAGGCGCTCCAGCTTGTA 60.683 55.000 7.64 0.00 39.32 2.41
677 2315 0.528684 CTAGGCGCTCCAGCTTGTAC 60.529 60.000 7.64 0.00 39.32 2.90
678 2316 0.970937 TAGGCGCTCCAGCTTGTACT 60.971 55.000 7.64 0.00 39.32 2.73
679 2317 1.811679 GGCGCTCCAGCTTGTACTC 60.812 63.158 7.64 0.00 39.32 2.59
680 2318 1.811679 GCGCTCCAGCTTGTACTCC 60.812 63.158 0.00 0.00 39.32 3.85
681 2319 1.893786 CGCTCCAGCTTGTACTCCT 59.106 57.895 0.00 0.00 39.32 3.69
682 2320 1.103803 CGCTCCAGCTTGTACTCCTA 58.896 55.000 0.00 0.00 39.32 2.94
683 2321 1.683917 CGCTCCAGCTTGTACTCCTAT 59.316 52.381 0.00 0.00 39.32 2.57
684 2322 2.101582 CGCTCCAGCTTGTACTCCTATT 59.898 50.000 0.00 0.00 39.32 1.73
685 2323 3.723260 GCTCCAGCTTGTACTCCTATTC 58.277 50.000 0.00 0.00 38.21 1.75
686 2324 3.493524 GCTCCAGCTTGTACTCCTATTCC 60.494 52.174 0.00 0.00 38.21 3.01
687 2325 2.693591 TCCAGCTTGTACTCCTATTCCG 59.306 50.000 0.00 0.00 0.00 4.30
688 2326 2.224066 CCAGCTTGTACTCCTATTCCGG 60.224 54.545 0.00 0.00 0.00 5.14
689 2327 2.693591 CAGCTTGTACTCCTATTCCGGA 59.306 50.000 0.00 0.00 0.00 5.14
690 2328 3.132289 CAGCTTGTACTCCTATTCCGGAA 59.868 47.826 21.37 21.37 31.44 4.30
691 2329 3.385111 AGCTTGTACTCCTATTCCGGAAG 59.615 47.826 23.47 10.91 31.44 3.46
692 2330 3.383825 GCTTGTACTCCTATTCCGGAAGA 59.616 47.826 23.47 17.73 31.44 2.87
693 2331 4.142004 GCTTGTACTCCTATTCCGGAAGAA 60.142 45.833 23.47 12.20 39.32 2.52
694 2332 5.626116 GCTTGTACTCCTATTCCGGAAGAAA 60.626 44.000 23.47 9.61 38.21 2.52
695 2333 6.363167 TTGTACTCCTATTCCGGAAGAAAA 57.637 37.500 23.47 7.77 38.21 2.29
735 2373 2.698274 TCTATTCACCGCTTCTGGCATA 59.302 45.455 0.00 0.00 41.91 3.14
748 2386 4.392921 TCTGGCATAGAGTTGCTCTTAC 57.607 45.455 3.87 0.00 41.50 2.34
760 2398 4.119862 GTTGCTCTTACCATGCGAGATTA 58.880 43.478 0.00 0.00 0.00 1.75
826 3277 3.928769 CATCATCGTGTGCGCCCG 61.929 66.667 4.18 4.70 38.14 6.13
958 3418 0.965866 CAGCCCGAGACCTGTCTGTA 60.966 60.000 4.19 0.00 40.61 2.74
1248 3729 2.190488 CTCCTGAGTGAAGGGGGCAC 62.190 65.000 0.00 0.00 37.96 5.01
1271 3752 3.423154 CTTCGTTGTGGAGCGGCC 61.423 66.667 0.00 0.00 37.10 6.13
1295 3776 0.318441 TCTTGTTCAGGGTGAGCGAG 59.682 55.000 2.42 2.42 39.57 5.03
1311 3792 1.736032 GCGAGCGTAGTGGATTTGTCT 60.736 52.381 0.00 0.00 0.00 3.41
1400 3881 3.308323 CGCTGAGAGAGGTTTGCTATTTC 59.692 47.826 0.00 0.00 0.00 2.17
1429 3910 0.796312 CATTCCGTTGGTTGGTCTCG 59.204 55.000 0.00 0.00 0.00 4.04
1483 3995 2.200792 TTGCCATTGTTCGTGTGTTG 57.799 45.000 0.00 0.00 0.00 3.33
1655 4216 1.775039 CTGCACACCCAGTGTTCGTG 61.775 60.000 0.00 0.00 45.08 4.35
1763 4324 1.229658 CCACCCCTCCTCCTCAAGT 60.230 63.158 0.00 0.00 0.00 3.16
1793 4354 2.815647 GTGCAGTGCGCCTACCTC 60.816 66.667 18.06 0.00 41.33 3.85
1994 4555 0.618680 TGGACATCCTCTGGGACCTG 60.619 60.000 0.00 0.00 45.43 4.00
2006 4567 2.747686 GACCTGTCCTCGGCCAAA 59.252 61.111 2.24 0.00 0.00 3.28
2009 4570 0.322546 ACCTGTCCTCGGCCAAATTC 60.323 55.000 2.24 0.00 0.00 2.17
2012 4573 1.745489 GTCCTCGGCCAAATTCGCT 60.745 57.895 2.24 0.00 0.00 4.93
2014 4575 2.100991 CTCGGCCAAATTCGCTGC 59.899 61.111 2.24 0.00 32.38 5.25
2120 4681 1.070786 GGGTCACAAGGCGTCTTCA 59.929 57.895 0.00 0.00 0.00 3.02
2303 4864 3.308046 GGATTGGGAAGAAGAGAGTGCTT 60.308 47.826 0.00 0.00 0.00 3.91
2339 4900 4.038271 TGCATGGAAGTTCAGAGGAAAT 57.962 40.909 5.01 0.00 34.13 2.17
2363 4924 3.704566 AGACGTTCTATGTTGATGGCCTA 59.295 43.478 3.32 0.00 0.00 3.93
2557 5118 4.830046 TGCATGGAAGGTTTAGTAGCAAAA 59.170 37.500 0.00 0.00 0.00 2.44
2558 5119 5.048083 TGCATGGAAGGTTTAGTAGCAAAAG 60.048 40.000 0.00 0.00 0.00 2.27
2559 5120 5.402398 CATGGAAGGTTTAGTAGCAAAAGC 58.598 41.667 0.00 0.00 35.16 3.51
2582 5144 0.305922 GCGATGGCAGATTTCTTCGG 59.694 55.000 6.55 0.00 39.62 4.30
2589 5151 2.937149 GGCAGATTTCTTCGGTTACTCC 59.063 50.000 0.00 0.00 0.00 3.85
2622 5184 9.182933 GATGAACGAATCCTAACAGTAGAATAC 57.817 37.037 0.00 0.00 43.47 1.89
2709 5271 3.644265 TCTAGTGGTGGTTAGCAAGTTGA 59.356 43.478 7.16 0.00 35.84 3.18
2760 5323 3.820467 TGTCAATGAGTGGTGGAATGTTC 59.180 43.478 0.00 0.00 0.00 3.18
2761 5324 3.820467 GTCAATGAGTGGTGGAATGTTCA 59.180 43.478 0.00 0.00 0.00 3.18
2774 5337 6.341316 GTGGAATGTTCAGCTGATTCTAGTA 58.659 40.000 19.04 0.00 0.00 1.82
2793 5356 7.918076 TCTAGTACTCCATTTGTCTTTCCATT 58.082 34.615 0.00 0.00 0.00 3.16
2821 5384 2.553602 TGCGCATTGTGAACAGAAATCT 59.446 40.909 5.66 0.00 0.00 2.40
2829 5392 8.078596 GCATTGTGAACAGAAATCTAAGAAAGT 58.921 33.333 0.00 0.00 0.00 2.66
2830 5393 9.956720 CATTGTGAACAGAAATCTAAGAAAGTT 57.043 29.630 0.00 0.00 0.00 2.66
2914 5477 9.143155 TGTATATTTTCAGTGAGGCTATGTAGA 57.857 33.333 0.00 0.00 0.00 2.59
2917 5480 4.991153 TTCAGTGAGGCTATGTAGAGTG 57.009 45.455 0.00 0.00 0.00 3.51
2919 5482 3.948473 TCAGTGAGGCTATGTAGAGTGAC 59.052 47.826 0.00 0.00 0.00 3.67
2921 5484 5.104485 TCAGTGAGGCTATGTAGAGTGACTA 60.104 44.000 0.00 0.00 0.00 2.59
2967 5889 6.429078 GCAGTCTGGCAAAGATAATGATGATA 59.571 38.462 1.14 0.00 37.23 2.15
2970 5892 9.228949 AGTCTGGCAAAGATAATGATGATAATC 57.771 33.333 0.00 0.00 37.23 1.75
2972 5894 9.227777 TCTGGCAAAGATAATGATGATAATCAG 57.772 33.333 0.00 0.00 33.59 2.90
2975 5897 7.968956 GGCAAAGATAATGATGATAATCAGCAG 59.031 37.037 0.00 0.00 46.57 4.24
2977 5899 9.011095 CAAAGATAATGATGATAATCAGCAGGT 57.989 33.333 0.00 0.00 46.57 4.00
2978 5900 9.584008 AAAGATAATGATGATAATCAGCAGGTT 57.416 29.630 0.00 0.00 46.57 3.50
2979 5901 9.584008 AAGATAATGATGATAATCAGCAGGTTT 57.416 29.630 0.00 0.00 46.57 3.27
2980 5902 9.228949 AGATAATGATGATAATCAGCAGGTTTC 57.771 33.333 0.00 0.00 46.57 2.78
2981 5903 8.929260 ATAATGATGATAATCAGCAGGTTTCA 57.071 30.769 0.00 0.00 46.57 2.69
2983 5905 7.834881 ATGATGATAATCAGCAGGTTTCATT 57.165 32.000 0.00 0.00 46.57 2.57
2984 5906 7.649533 TGATGATAATCAGCAGGTTTCATTT 57.350 32.000 0.00 0.00 37.93 2.32
2985 5907 7.709947 TGATGATAATCAGCAGGTTTCATTTC 58.290 34.615 0.00 0.00 37.93 2.17
2986 5908 7.558807 TGATGATAATCAGCAGGTTTCATTTCT 59.441 33.333 0.00 0.00 37.93 2.52
2987 5909 7.707624 TGATAATCAGCAGGTTTCATTTCTT 57.292 32.000 0.00 0.00 0.00 2.52
2988 5910 8.806429 TGATAATCAGCAGGTTTCATTTCTTA 57.194 30.769 0.00 0.00 0.00 2.10
2989 5911 9.241919 TGATAATCAGCAGGTTTCATTTCTTAA 57.758 29.630 0.00 0.00 0.00 1.85
2990 5912 9.508567 GATAATCAGCAGGTTTCATTTCTTAAC 57.491 33.333 0.00 0.00 0.00 2.01
2991 5913 5.705609 TCAGCAGGTTTCATTTCTTAACC 57.294 39.130 0.00 0.00 41.27 2.85
2992 5914 5.136828 TCAGCAGGTTTCATTTCTTAACCA 58.863 37.500 0.00 0.00 42.96 3.67
2993 5915 5.774690 TCAGCAGGTTTCATTTCTTAACCAT 59.225 36.000 0.00 0.00 42.96 3.55
2994 5916 6.071952 TCAGCAGGTTTCATTTCTTAACCATC 60.072 38.462 0.00 0.00 42.96 3.51
2995 5917 5.095490 GCAGGTTTCATTTCTTAACCATCG 58.905 41.667 0.00 0.00 42.96 3.84
2996 5918 5.095490 CAGGTTTCATTTCTTAACCATCGC 58.905 41.667 0.00 0.00 42.96 4.58
2997 5919 4.764823 AGGTTTCATTTCTTAACCATCGCA 59.235 37.500 0.00 0.00 42.96 5.10
2998 5920 5.095490 GGTTTCATTTCTTAACCATCGCAG 58.905 41.667 0.00 0.00 40.77 5.18
2999 5921 5.106317 GGTTTCATTTCTTAACCATCGCAGA 60.106 40.000 0.00 0.00 40.77 4.26
3000 5922 6.378582 GTTTCATTTCTTAACCATCGCAGAA 58.621 36.000 0.00 0.00 43.58 3.02
3001 5923 5.545658 TCATTTCTTAACCATCGCAGAAC 57.454 39.130 0.00 0.00 43.58 3.01
3002 5924 5.245531 TCATTTCTTAACCATCGCAGAACT 58.754 37.500 0.00 0.00 43.58 3.01
3003 5925 5.351465 TCATTTCTTAACCATCGCAGAACTC 59.649 40.000 0.00 0.00 43.58 3.01
3004 5926 4.537135 TTCTTAACCATCGCAGAACTCT 57.463 40.909 0.00 0.00 43.58 3.24
3005 5927 3.849911 TCTTAACCATCGCAGAACTCTG 58.150 45.455 2.17 2.17 43.58 3.35
3006 5928 3.509967 TCTTAACCATCGCAGAACTCTGA 59.490 43.478 10.95 0.00 46.59 3.27
3007 5929 2.376808 AACCATCGCAGAACTCTGAG 57.623 50.000 10.95 7.49 46.59 3.35
3008 5930 0.108424 ACCATCGCAGAACTCTGAGC 60.108 55.000 10.95 0.00 46.59 4.26
3009 5931 0.108472 CCATCGCAGAACTCTGAGCA 60.108 55.000 10.95 0.00 46.59 4.26
3010 5932 1.472904 CCATCGCAGAACTCTGAGCAT 60.473 52.381 10.95 0.00 46.59 3.79
3011 5933 1.593469 CATCGCAGAACTCTGAGCATG 59.407 52.381 10.95 8.96 46.59 4.06
3012 5934 0.738762 TCGCAGAACTCTGAGCATGC 60.739 55.000 10.51 10.51 46.59 4.06
3013 5935 0.740164 CGCAGAACTCTGAGCATGCT 60.740 55.000 22.92 22.92 46.59 3.79
3014 5936 0.727970 GCAGAACTCTGAGCATGCTG 59.272 55.000 28.27 13.47 46.59 4.41
3015 5937 0.727970 CAGAACTCTGAGCATGCTGC 59.272 55.000 28.27 16.92 46.59 5.25
3016 5938 1.944430 CAGAACTCTGAGCATGCTGCA 60.944 52.381 28.27 20.50 46.59 4.41
3017 5939 4.067496 CAGAACTCTGAGCATGCTGCAC 62.067 54.545 28.27 11.81 46.59 4.57
3025 5947 3.138798 CATGCTGCACTGCCCCTC 61.139 66.667 3.57 0.00 0.00 4.30
3026 5948 4.437587 ATGCTGCACTGCCCCTCC 62.438 66.667 3.57 0.00 0.00 4.30
3029 5951 4.421515 CTGCACTGCCCCTCCCAG 62.422 72.222 0.00 0.00 36.41 4.45
3033 5955 3.252284 ACTGCCCCTCCCAGTGTG 61.252 66.667 0.00 0.00 41.68 3.82
3034 5956 4.729918 CTGCCCCTCCCAGTGTGC 62.730 72.222 0.00 0.00 0.00 4.57
3036 5958 4.729918 GCCCCTCCCAGTGTGCAG 62.730 72.222 0.00 0.00 0.00 4.41
3059 5981 5.853936 GTGTGCTTCACCACTGGATATATA 58.146 41.667 0.71 0.00 40.84 0.86
3060 5982 6.467677 GTGTGCTTCACCACTGGATATATAT 58.532 40.000 0.71 0.00 40.84 0.86
3083 6005 4.133078 GTTGATGATTGATCCTCCTGTCC 58.867 47.826 0.00 0.00 0.00 4.02
3085 6007 3.390311 TGATGATTGATCCTCCTGTCCTG 59.610 47.826 0.00 0.00 0.00 3.86
3129 8056 7.612266 CAAATGTGGAAGTTTTCTTTTTCTCG 58.388 34.615 0.00 0.00 40.61 4.04
3130 8057 4.668289 TGTGGAAGTTTTCTTTTTCTCGC 58.332 39.130 0.00 0.00 40.61 5.03
3131 8058 3.724257 GTGGAAGTTTTCTTTTTCTCGCG 59.276 43.478 0.00 0.00 40.61 5.87
3132 8059 3.623960 TGGAAGTTTTCTTTTTCTCGCGA 59.376 39.130 9.26 9.26 40.61 5.87
3134 8061 4.025145 GGAAGTTTTCTTTTTCTCGCGAGA 60.025 41.667 33.84 33.84 40.61 4.04
3159 8086 5.289595 GGAAAAGTGGAAGTCAAAATGTCC 58.710 41.667 0.00 0.00 0.00 4.02
3168 8095 5.523552 GGAAGTCAAAATGTCCAAAACCAAG 59.476 40.000 0.00 0.00 0.00 3.61
3171 8098 6.340522 AGTCAAAATGTCCAAAACCAAGAAG 58.659 36.000 0.00 0.00 0.00 2.85
3178 8105 5.200483 TGTCCAAAACCAAGAAGTCAGATT 58.800 37.500 0.00 0.00 0.00 2.40
3179 8106 6.361433 TGTCCAAAACCAAGAAGTCAGATTA 58.639 36.000 0.00 0.00 0.00 1.75
3282 8483 8.992349 TGATCCCTTCTCAAAGTAATGAATCTA 58.008 33.333 0.00 0.00 0.00 1.98
3317 8518 7.995488 ACATCCTCCCTCTGTATCAAAAATAAG 59.005 37.037 0.00 0.00 0.00 1.73
3319 8520 7.928873 TCCTCCCTCTGTATCAAAAATAAGTT 58.071 34.615 0.00 0.00 0.00 2.66
3354 8555 9.762933 TTAGTATAACTTCGTACAAAAGTTGGT 57.237 29.630 23.67 17.24 44.47 3.67
3393 8594 7.980099 CACTAATTTTAGGACGGAATGAGTACT 59.020 37.037 0.00 0.00 36.60 2.73
3445 8646 5.853936 TGAGCACCACAATACTGGTATATC 58.146 41.667 0.00 0.00 43.15 1.63
3448 8649 4.452455 GCACCACAATACTGGTATATCAGC 59.548 45.833 13.12 0.00 43.15 4.26
3471 8672 9.322776 CAGCGCAGATTATTTATTCTAATTGTC 57.677 33.333 11.47 0.00 0.00 3.18
3486 8687 6.806751 TCTAATTGTCTTTATACTCGCTGCT 58.193 36.000 0.00 0.00 0.00 4.24
3514 8715 4.823442 CCTTTAGCAGAATATCATGCACCA 59.177 41.667 12.98 0.00 45.01 4.17
3555 8757 7.572353 GCATCGTACACCTATCTTTTTGTCAAA 60.572 37.037 0.00 0.00 0.00 2.69
3676 8878 7.664758 TCAACTACTCCTAAAGTTTACAGGAC 58.335 38.462 3.38 0.00 39.55 3.85
3719 8921 6.665992 AGTAATGAGACTGGTTACTGAACA 57.334 37.500 7.83 0.00 37.30 3.18
3720 8922 7.246171 AGTAATGAGACTGGTTACTGAACAT 57.754 36.000 7.83 0.00 37.30 2.71
3721 8923 7.324178 AGTAATGAGACTGGTTACTGAACATC 58.676 38.462 7.83 0.00 37.30 3.06
3722 8924 6.365970 AATGAGACTGGTTACTGAACATCT 57.634 37.500 0.00 0.00 37.29 2.90
3723 8925 5.808366 TGAGACTGGTTACTGAACATCTT 57.192 39.130 0.00 0.00 37.29 2.40
3724 8926 6.174720 TGAGACTGGTTACTGAACATCTTT 57.825 37.500 0.00 0.00 37.29 2.52
3725 8927 6.223852 TGAGACTGGTTACTGAACATCTTTC 58.776 40.000 0.00 0.00 37.29 2.62
3726 8928 6.042093 TGAGACTGGTTACTGAACATCTTTCT 59.958 38.462 0.00 0.00 37.29 2.52
3727 8929 6.831976 AGACTGGTTACTGAACATCTTTCTT 58.168 36.000 0.00 0.00 37.29 2.52
3728 8930 6.708054 AGACTGGTTACTGAACATCTTTCTTG 59.292 38.462 0.00 0.00 37.29 3.02
3729 8931 6.357367 ACTGGTTACTGAACATCTTTCTTGT 58.643 36.000 0.00 0.00 37.29 3.16
3730 8932 6.260936 ACTGGTTACTGAACATCTTTCTTGTG 59.739 38.462 0.00 0.00 37.29 3.33
3731 8933 5.530915 TGGTTACTGAACATCTTTCTTGTGG 59.469 40.000 0.00 0.00 37.29 4.17
3732 8934 5.048713 GGTTACTGAACATCTTTCTTGTGGG 60.049 44.000 0.00 0.00 37.29 4.61
3733 8935 4.170468 ACTGAACATCTTTCTTGTGGGT 57.830 40.909 0.00 0.00 0.00 4.51
3734 8936 3.885297 ACTGAACATCTTTCTTGTGGGTG 59.115 43.478 0.00 0.00 0.00 4.61
3735 8937 3.885297 CTGAACATCTTTCTTGTGGGTGT 59.115 43.478 0.00 0.00 0.00 4.16
3736 8938 4.277476 TGAACATCTTTCTTGTGGGTGTT 58.723 39.130 0.00 0.00 0.00 3.32
3737 8939 4.097741 TGAACATCTTTCTTGTGGGTGTTG 59.902 41.667 0.00 0.00 0.00 3.33
3738 8940 3.897239 ACATCTTTCTTGTGGGTGTTGA 58.103 40.909 0.00 0.00 0.00 3.18
3739 8941 4.473444 ACATCTTTCTTGTGGGTGTTGAT 58.527 39.130 0.00 0.00 0.00 2.57
3740 8942 4.279169 ACATCTTTCTTGTGGGTGTTGATG 59.721 41.667 0.00 0.00 36.05 3.07
3741 8943 4.163441 TCTTTCTTGTGGGTGTTGATGA 57.837 40.909 0.00 0.00 0.00 2.92
3742 8944 4.531854 TCTTTCTTGTGGGTGTTGATGAA 58.468 39.130 0.00 0.00 0.00 2.57
3770 8972 5.449107 TGAGCTCCACGTTAAGGATATAC 57.551 43.478 12.15 0.00 33.99 1.47
3780 8982 7.650903 CCACGTTAAGGATATACTAGTCCAAAC 59.349 40.741 0.00 2.99 36.96 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.636313 TTACCGACGCAGGGCTTCG 62.636 63.158 9.73 9.73 47.00 3.79
1 2 2.098831 GTTACCGACGCAGGGCTTC 61.099 63.158 1.73 0.00 35.02 3.86
2 3 2.047560 GTTACCGACGCAGGGCTT 60.048 61.111 1.73 0.00 35.02 4.35
4 5 2.047560 AAGTTACCGACGCAGGGC 60.048 61.111 1.73 0.00 35.02 5.19
5 6 0.108329 ATGAAGTTACCGACGCAGGG 60.108 55.000 1.73 0.00 35.02 4.45
6 7 1.278238 GATGAAGTTACCGACGCAGG 58.722 55.000 0.00 0.00 37.30 4.85
7 8 1.990799 TGATGAAGTTACCGACGCAG 58.009 50.000 0.00 0.00 0.00 5.18
8 9 2.094442 TGATGATGAAGTTACCGACGCA 60.094 45.455 0.00 0.00 0.00 5.24
9 10 2.281762 GTGATGATGAAGTTACCGACGC 59.718 50.000 0.00 0.00 0.00 5.19
10 11 2.858344 GGTGATGATGAAGTTACCGACG 59.142 50.000 0.00 0.00 0.00 5.12
14 15 1.940613 GGCGGTGATGATGAAGTTACC 59.059 52.381 0.00 0.00 0.00 2.85
15 16 2.627945 TGGCGGTGATGATGAAGTTAC 58.372 47.619 0.00 0.00 0.00 2.50
16 17 3.006940 GTTGGCGGTGATGATGAAGTTA 58.993 45.455 0.00 0.00 0.00 2.24
17 18 1.812571 GTTGGCGGTGATGATGAAGTT 59.187 47.619 0.00 0.00 0.00 2.66
18 19 1.271325 TGTTGGCGGTGATGATGAAGT 60.271 47.619 0.00 0.00 0.00 3.01
19 20 1.131126 GTGTTGGCGGTGATGATGAAG 59.869 52.381 0.00 0.00 0.00 3.02
20 21 1.164411 GTGTTGGCGGTGATGATGAA 58.836 50.000 0.00 0.00 0.00 2.57
21 22 1.018752 CGTGTTGGCGGTGATGATGA 61.019 55.000 0.00 0.00 0.00 2.92
22 23 1.425031 CGTGTTGGCGGTGATGATG 59.575 57.895 0.00 0.00 0.00 3.07
23 24 2.398554 GCGTGTTGGCGGTGATGAT 61.399 57.895 0.00 0.00 0.00 2.45
24 25 3.047280 GCGTGTTGGCGGTGATGA 61.047 61.111 0.00 0.00 0.00 2.92
25 26 4.101790 GGCGTGTTGGCGGTGATG 62.102 66.667 0.00 0.00 0.00 3.07
46 47 2.159544 CGAGGGAGAGTTTCGTCAGTAC 60.160 54.545 0.00 0.00 0.00 2.73
47 48 2.082231 CGAGGGAGAGTTTCGTCAGTA 58.918 52.381 0.00 0.00 0.00 2.74
48 49 0.882474 CGAGGGAGAGTTTCGTCAGT 59.118 55.000 0.00 0.00 0.00 3.41
49 50 1.135632 GTCGAGGGAGAGTTTCGTCAG 60.136 57.143 0.00 0.00 35.90 3.51
50 51 0.879765 GTCGAGGGAGAGTTTCGTCA 59.120 55.000 0.00 0.00 35.90 4.35
51 52 0.170784 GGTCGAGGGAGAGTTTCGTC 59.829 60.000 0.00 0.00 35.90 4.20
52 53 0.251253 AGGTCGAGGGAGAGTTTCGT 60.251 55.000 0.00 0.00 35.90 3.85
53 54 0.452585 GAGGTCGAGGGAGAGTTTCG 59.547 60.000 0.00 0.00 35.76 3.46
54 55 1.474879 CTGAGGTCGAGGGAGAGTTTC 59.525 57.143 0.00 0.00 0.00 2.78
55 56 1.551452 CTGAGGTCGAGGGAGAGTTT 58.449 55.000 0.00 0.00 0.00 2.66
56 57 0.968393 GCTGAGGTCGAGGGAGAGTT 60.968 60.000 0.00 0.00 0.00 3.01
57 58 1.379309 GCTGAGGTCGAGGGAGAGT 60.379 63.158 0.00 0.00 0.00 3.24
58 59 1.077068 AGCTGAGGTCGAGGGAGAG 60.077 63.158 0.00 0.00 0.00 3.20
59 60 1.379176 CAGCTGAGGTCGAGGGAGA 60.379 63.158 8.42 0.00 0.00 3.71
60 61 2.422231 CCAGCTGAGGTCGAGGGAG 61.422 68.421 17.39 0.00 0.00 4.30
61 62 2.230189 ATCCAGCTGAGGTCGAGGGA 62.230 60.000 17.39 0.00 0.00 4.20
62 63 1.743321 GATCCAGCTGAGGTCGAGGG 61.743 65.000 17.39 0.00 0.00 4.30
63 64 0.754957 AGATCCAGCTGAGGTCGAGG 60.755 60.000 17.39 0.00 0.00 4.63
64 65 1.879380 CTAGATCCAGCTGAGGTCGAG 59.121 57.143 17.39 12.55 0.00 4.04
65 66 1.490910 TCTAGATCCAGCTGAGGTCGA 59.509 52.381 17.39 3.29 0.00 4.20
66 67 1.974265 TCTAGATCCAGCTGAGGTCG 58.026 55.000 17.39 0.00 0.00 4.79
67 68 3.295973 ACTTCTAGATCCAGCTGAGGTC 58.704 50.000 17.39 11.27 0.00 3.85
68 69 3.396685 ACTTCTAGATCCAGCTGAGGT 57.603 47.619 17.39 0.56 0.00 3.85
69 70 3.243367 CGAACTTCTAGATCCAGCTGAGG 60.243 52.174 17.39 0.00 0.00 3.86
70 71 3.629855 TCGAACTTCTAGATCCAGCTGAG 59.370 47.826 17.39 3.86 0.00 3.35
71 72 3.621558 TCGAACTTCTAGATCCAGCTGA 58.378 45.455 17.39 1.21 0.00 4.26
72 73 3.243367 CCTCGAACTTCTAGATCCAGCTG 60.243 52.174 6.78 6.78 0.00 4.24
73 74 2.955660 CCTCGAACTTCTAGATCCAGCT 59.044 50.000 0.00 0.00 0.00 4.24
74 75 2.035321 CCCTCGAACTTCTAGATCCAGC 59.965 54.545 0.00 0.00 0.00 4.85
75 76 3.316868 GTCCCTCGAACTTCTAGATCCAG 59.683 52.174 0.00 0.00 0.00 3.86
76 77 3.288964 GTCCCTCGAACTTCTAGATCCA 58.711 50.000 0.00 0.00 0.00 3.41
77 78 2.291190 CGTCCCTCGAACTTCTAGATCC 59.709 54.545 0.00 0.00 42.86 3.36
78 79 2.944349 ACGTCCCTCGAACTTCTAGATC 59.056 50.000 0.00 0.00 42.86 2.75
79 80 2.944349 GACGTCCCTCGAACTTCTAGAT 59.056 50.000 3.51 0.00 42.86 1.98
80 81 2.289882 TGACGTCCCTCGAACTTCTAGA 60.290 50.000 14.12 0.00 42.86 2.43
81 82 2.082231 TGACGTCCCTCGAACTTCTAG 58.918 52.381 14.12 0.00 42.86 2.43
82 83 1.808945 GTGACGTCCCTCGAACTTCTA 59.191 52.381 14.12 0.00 42.86 2.10
83 84 0.597072 GTGACGTCCCTCGAACTTCT 59.403 55.000 14.12 0.00 42.86 2.85
84 85 0.388263 GGTGACGTCCCTCGAACTTC 60.388 60.000 14.12 0.00 42.86 3.01
85 86 1.664306 GGTGACGTCCCTCGAACTT 59.336 57.895 14.12 0.00 42.86 2.66
86 87 3.363351 GGTGACGTCCCTCGAACT 58.637 61.111 14.12 0.00 42.86 3.01
98 99 1.299926 ACACGTTCAGCTCGGTGAC 60.300 57.895 9.25 0.00 0.00 3.67
99 100 1.299850 CACACGTTCAGCTCGGTGA 60.300 57.895 9.25 0.00 34.24 4.02
100 101 2.943345 GCACACGTTCAGCTCGGTG 61.943 63.158 9.18 9.18 34.88 4.94
101 102 2.661866 GCACACGTTCAGCTCGGT 60.662 61.111 0.00 0.00 0.00 4.69
102 103 3.767230 CGCACACGTTCAGCTCGG 61.767 66.667 0.00 0.00 33.53 4.63
103 104 3.767230 CCGCACACGTTCAGCTCG 61.767 66.667 0.00 0.00 37.70 5.03
104 105 1.687494 GATCCGCACACGTTCAGCTC 61.687 60.000 0.00 0.00 37.70 4.09
105 106 1.738099 GATCCGCACACGTTCAGCT 60.738 57.895 0.00 0.00 37.70 4.24
106 107 2.778679 GATCCGCACACGTTCAGC 59.221 61.111 0.00 0.00 37.70 4.26
107 108 3.072598 CGATCCGCACACGTTCAG 58.927 61.111 0.00 0.00 37.70 3.02
118 119 4.907034 CGACACCTCCGCGATCCG 62.907 72.222 8.23 0.00 0.00 4.18
119 120 3.823330 ACGACACCTCCGCGATCC 61.823 66.667 8.23 0.00 0.00 3.36
120 121 2.579787 CACGACACCTCCGCGATC 60.580 66.667 8.23 0.00 0.00 3.69
121 122 4.796231 GCACGACACCTCCGCGAT 62.796 66.667 8.23 0.00 0.00 4.58
125 126 3.103911 GAACGCACGACACCTCCG 61.104 66.667 0.00 0.00 0.00 4.63
126 127 3.103911 CGAACGCACGACACCTCC 61.104 66.667 0.00 0.00 35.09 4.30
127 128 2.462255 TACCGAACGCACGACACCTC 62.462 60.000 0.00 0.00 35.09 3.85
128 129 2.554636 TACCGAACGCACGACACCT 61.555 57.895 0.00 0.00 35.09 4.00
129 130 2.050168 TACCGAACGCACGACACC 60.050 61.111 0.00 0.00 35.09 4.16
130 131 0.936297 AAGTACCGAACGCACGACAC 60.936 55.000 0.00 1.68 35.09 3.67
131 132 0.935831 CAAGTACCGAACGCACGACA 60.936 55.000 0.00 0.00 35.09 4.35
132 133 0.661187 TCAAGTACCGAACGCACGAC 60.661 55.000 0.00 0.00 35.09 4.34
133 134 0.241749 ATCAAGTACCGAACGCACGA 59.758 50.000 0.00 0.00 35.09 4.35
134 135 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
135 136 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
136 137 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
137 138 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
138 139 1.916000 GAACCGATCAAGTACCGAACG 59.084 52.381 5.81 5.81 0.00 3.95
139 140 1.916000 CGAACCGATCAAGTACCGAAC 59.084 52.381 0.00 0.00 0.00 3.95
140 141 1.811965 TCGAACCGATCAAGTACCGAA 59.188 47.619 0.00 0.00 0.00 4.30
141 142 1.452110 TCGAACCGATCAAGTACCGA 58.548 50.000 0.00 0.48 0.00 4.69
142 143 2.486951 ATCGAACCGATCAAGTACCG 57.513 50.000 0.00 0.00 43.45 4.02
157 158 2.020969 CGACGTCTTCGCGATCGA 59.979 61.111 26.35 17.15 41.87 3.59
165 166 3.169733 GGTTGATGTAGTCGACGTCTTC 58.830 50.000 14.70 14.08 43.53 2.87
166 167 2.413765 CGGTTGATGTAGTCGACGTCTT 60.414 50.000 14.70 5.59 43.53 3.01
167 168 1.129998 CGGTTGATGTAGTCGACGTCT 59.870 52.381 14.70 0.00 43.53 4.18
168 169 1.531912 CGGTTGATGTAGTCGACGTC 58.468 55.000 10.46 5.18 41.44 4.34
169 170 0.455633 GCGGTTGATGTAGTCGACGT 60.456 55.000 10.46 1.19 41.44 4.34
170 171 1.461317 CGCGGTTGATGTAGTCGACG 61.461 60.000 10.46 0.00 41.44 5.12
171 172 0.455633 ACGCGGTTGATGTAGTCGAC 60.456 55.000 12.47 7.70 40.04 4.20
172 173 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
173 174 1.580704 GTAACGCGGTTGATGTAGTCG 59.419 52.381 12.47 0.00 0.00 4.18
174 175 2.872370 AGTAACGCGGTTGATGTAGTC 58.128 47.619 12.47 0.00 0.00 2.59
175 176 3.308438 AAGTAACGCGGTTGATGTAGT 57.692 42.857 12.47 0.00 0.00 2.73
176 177 5.122328 GTTAAGTAACGCGGTTGATGTAG 57.878 43.478 12.47 0.00 0.00 2.74
204 205 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
205 206 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
206 207 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
207 208 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
208 209 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
209 210 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
210 211 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
211 212 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
212 213 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
213 214 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
214 215 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
215 216 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
216 217 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
217 218 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
218 219 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
219 220 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
220 221 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
221 222 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
222 223 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
223 224 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
224 225 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
225 226 2.657237 GGGGAGAGTGTGTCCACG 59.343 66.667 0.00 0.00 46.56 4.94
226 227 2.657237 CGGGGAGAGTGTGTCCAC 59.343 66.667 0.00 0.00 42.17 4.02
227 228 3.311110 GCGGGGAGAGTGTGTCCA 61.311 66.667 0.00 0.00 35.57 4.02
228 229 2.997897 AGCGGGGAGAGTGTGTCC 60.998 66.667 0.00 0.00 0.00 4.02
229 230 2.574399 GAGCGGGGAGAGTGTGTC 59.426 66.667 0.00 0.00 0.00 3.67
230 231 3.374402 CGAGCGGGGAGAGTGTGT 61.374 66.667 0.00 0.00 0.00 3.72
231 232 2.932234 AACGAGCGGGGAGAGTGTG 61.932 63.158 0.00 0.00 0.00 3.82
232 233 2.600769 AACGAGCGGGGAGAGTGT 60.601 61.111 0.00 0.00 0.00 3.55
233 234 2.125912 CAACGAGCGGGGAGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
234 235 4.070552 GCAACGAGCGGGGAGAGT 62.071 66.667 0.00 0.00 0.00 3.24
243 244 0.933796 GGAGAAGCATAGCAACGAGC 59.066 55.000 0.00 0.00 46.19 5.03
244 245 2.593346 AGGAGAAGCATAGCAACGAG 57.407 50.000 0.00 0.00 0.00 4.18
245 246 2.233676 TCAAGGAGAAGCATAGCAACGA 59.766 45.455 0.00 0.00 0.00 3.85
246 247 2.621338 TCAAGGAGAAGCATAGCAACG 58.379 47.619 0.00 0.00 0.00 4.10
247 248 5.605534 TCTATCAAGGAGAAGCATAGCAAC 58.394 41.667 0.00 0.00 0.00 4.17
248 249 5.876651 TCTATCAAGGAGAAGCATAGCAA 57.123 39.130 0.00 0.00 0.00 3.91
249 250 5.779260 AGATCTATCAAGGAGAAGCATAGCA 59.221 40.000 0.00 0.00 0.00 3.49
250 251 6.284891 AGATCTATCAAGGAGAAGCATAGC 57.715 41.667 0.00 0.00 0.00 2.97
251 252 6.591062 GCAAGATCTATCAAGGAGAAGCATAG 59.409 42.308 0.00 0.00 0.00 2.23
252 253 6.462500 GCAAGATCTATCAAGGAGAAGCATA 58.538 40.000 0.00 0.00 0.00 3.14
253 254 5.307204 GCAAGATCTATCAAGGAGAAGCAT 58.693 41.667 0.00 0.00 0.00 3.79
254 255 4.701765 GCAAGATCTATCAAGGAGAAGCA 58.298 43.478 0.00 0.00 0.00 3.91
255 256 3.740321 CGCAAGATCTATCAAGGAGAAGC 59.260 47.826 0.00 0.00 43.02 3.86
256 257 4.744137 CACGCAAGATCTATCAAGGAGAAG 59.256 45.833 0.00 0.00 43.62 2.85
257 258 4.402474 TCACGCAAGATCTATCAAGGAGAA 59.598 41.667 0.00 0.00 43.62 2.87
258 259 3.954258 TCACGCAAGATCTATCAAGGAGA 59.046 43.478 0.00 0.00 43.62 3.71
259 260 4.313277 TCACGCAAGATCTATCAAGGAG 57.687 45.455 0.00 0.00 43.62 3.69
260 261 4.557496 CGATCACGCAAGATCTATCAAGGA 60.557 45.833 12.06 0.00 41.74 3.36
261 262 3.672397 CGATCACGCAAGATCTATCAAGG 59.328 47.826 12.06 0.00 41.74 3.61
262 263 4.294232 ACGATCACGCAAGATCTATCAAG 58.706 43.478 12.06 0.88 41.74 3.02
263 264 4.307443 ACGATCACGCAAGATCTATCAA 57.693 40.909 12.06 0.00 41.74 2.57
264 265 3.990318 ACGATCACGCAAGATCTATCA 57.010 42.857 12.06 0.00 41.74 2.15
265 266 4.154375 TCCTACGATCACGCAAGATCTATC 59.846 45.833 12.06 0.00 41.74 2.08
266 267 4.072839 TCCTACGATCACGCAAGATCTAT 58.927 43.478 12.06 4.73 41.74 1.98
267 268 3.473625 TCCTACGATCACGCAAGATCTA 58.526 45.455 12.06 4.90 41.74 1.98
268 269 2.298610 TCCTACGATCACGCAAGATCT 58.701 47.619 12.06 0.00 41.74 2.75
269 270 2.776312 TCCTACGATCACGCAAGATC 57.224 50.000 5.52 5.52 43.96 2.75
270 271 3.735237 ATTCCTACGATCACGCAAGAT 57.265 42.857 0.00 0.00 43.96 2.40
271 272 3.520290 AATTCCTACGATCACGCAAGA 57.480 42.857 0.00 0.00 43.96 3.02
272 273 4.600012 AAAATTCCTACGATCACGCAAG 57.400 40.909 0.00 0.00 43.96 4.01
292 293 8.230472 TGTTGGGGAACGTAGTATTTTAAAAA 57.770 30.769 4.44 0.00 45.00 1.94
293 294 7.814264 TGTTGGGGAACGTAGTATTTTAAAA 57.186 32.000 2.51 2.51 45.00 1.52
294 295 7.718753 TCTTGTTGGGGAACGTAGTATTTTAAA 59.281 33.333 0.00 0.00 45.00 1.52
295 296 7.222872 TCTTGTTGGGGAACGTAGTATTTTAA 58.777 34.615 0.00 0.00 45.00 1.52
296 297 6.767456 TCTTGTTGGGGAACGTAGTATTTTA 58.233 36.000 0.00 0.00 45.00 1.52
297 298 5.623169 TCTTGTTGGGGAACGTAGTATTTT 58.377 37.500 0.00 0.00 45.00 1.82
298 299 5.231702 TCTTGTTGGGGAACGTAGTATTT 57.768 39.130 0.00 0.00 45.00 1.40
299 300 4.895668 TCTTGTTGGGGAACGTAGTATT 57.104 40.909 0.00 0.00 45.00 1.89
300 301 4.895668 TTCTTGTTGGGGAACGTAGTAT 57.104 40.909 0.00 0.00 45.00 2.12
301 302 4.686191 TTTCTTGTTGGGGAACGTAGTA 57.314 40.909 0.00 0.00 45.00 1.82
303 304 5.448632 GCATATTTCTTGTTGGGGAACGTAG 60.449 44.000 0.00 0.00 0.00 3.51
304 305 4.396790 GCATATTTCTTGTTGGGGAACGTA 59.603 41.667 0.00 0.00 0.00 3.57
305 306 3.192633 GCATATTTCTTGTTGGGGAACGT 59.807 43.478 0.00 0.00 0.00 3.99
306 307 3.428862 GGCATATTTCTTGTTGGGGAACG 60.429 47.826 0.00 0.00 0.00 3.95
307 308 3.118775 GGGCATATTTCTTGTTGGGGAAC 60.119 47.826 0.00 0.00 0.00 3.62
308 309 3.103742 GGGCATATTTCTTGTTGGGGAA 58.896 45.455 0.00 0.00 0.00 3.97
309 310 2.314549 AGGGCATATTTCTTGTTGGGGA 59.685 45.455 0.00 0.00 0.00 4.81
310 311 2.750814 AGGGCATATTTCTTGTTGGGG 58.249 47.619 0.00 0.00 0.00 4.96
311 312 4.956075 AGTTAGGGCATATTTCTTGTTGGG 59.044 41.667 0.00 0.00 0.00 4.12
312 313 5.679638 GCAGTTAGGGCATATTTCTTGTTGG 60.680 44.000 0.00 0.00 0.00 3.77
313 314 5.126061 AGCAGTTAGGGCATATTTCTTGTTG 59.874 40.000 0.00 0.00 0.00 3.33
314 315 5.264395 AGCAGTTAGGGCATATTTCTTGTT 58.736 37.500 0.00 0.00 0.00 2.83
315 316 4.860022 AGCAGTTAGGGCATATTTCTTGT 58.140 39.130 0.00 0.00 0.00 3.16
316 317 8.097038 TCTATAGCAGTTAGGGCATATTTCTTG 58.903 37.037 0.00 0.00 0.00 3.02
317 318 8.207350 TCTATAGCAGTTAGGGCATATTTCTT 57.793 34.615 0.00 0.00 0.00 2.52
323 324 6.463897 GGTTGTTCTATAGCAGTTAGGGCATA 60.464 42.308 0.00 0.00 0.00 3.14
359 360 3.676049 CGATGAAGATGGAGGTTTCGACA 60.676 47.826 0.00 0.00 0.00 4.35
365 366 0.911769 TGCCGATGAAGATGGAGGTT 59.088 50.000 0.00 0.00 0.00 3.50
435 436 2.810400 GCTAGTTGGTTGAGTGCAAGGA 60.810 50.000 0.00 0.00 34.01 3.36
437 438 1.537202 GGCTAGTTGGTTGAGTGCAAG 59.463 52.381 0.00 0.00 34.01 4.01
439 440 0.472044 TGGCTAGTTGGTTGAGTGCA 59.528 50.000 0.00 0.00 0.00 4.57
519 520 8.899427 ATTATCGAAGAACACATCATGAAGAT 57.101 30.769 4.68 0.00 43.58 2.40
556 557 6.206395 ACTACTCACACATGAAGATCAGAG 57.794 41.667 0.00 0.00 33.30 3.35
585 586 9.727627 CTTCTGGATTAGTTTGAATTGCTTATC 57.272 33.333 0.00 0.00 0.00 1.75
587 588 8.862325 TCTTCTGGATTAGTTTGAATTGCTTA 57.138 30.769 0.00 0.00 0.00 3.09
588 589 7.765695 TCTTCTGGATTAGTTTGAATTGCTT 57.234 32.000 0.00 0.00 0.00 3.91
589 590 7.765695 TTCTTCTGGATTAGTTTGAATTGCT 57.234 32.000 0.00 0.00 0.00 3.91
590 591 8.816640 TTTTCTTCTGGATTAGTTTGAATTGC 57.183 30.769 0.00 0.00 0.00 3.56
592 593 9.764363 GGTTTTTCTTCTGGATTAGTTTGAATT 57.236 29.630 0.00 0.00 0.00 2.17
593 594 8.082242 CGGTTTTTCTTCTGGATTAGTTTGAAT 58.918 33.333 0.00 0.00 0.00 2.57
594 595 7.283580 TCGGTTTTTCTTCTGGATTAGTTTGAA 59.716 33.333 0.00 0.00 0.00 2.69
595 596 6.768861 TCGGTTTTTCTTCTGGATTAGTTTGA 59.231 34.615 0.00 0.00 0.00 2.69
596 597 6.966021 TCGGTTTTTCTTCTGGATTAGTTTG 58.034 36.000 0.00 0.00 0.00 2.93
597 598 7.576861 TTCGGTTTTTCTTCTGGATTAGTTT 57.423 32.000 0.00 0.00 0.00 2.66
600 601 8.398665 CCTATTTCGGTTTTTCTTCTGGATTAG 58.601 37.037 0.00 0.00 0.00 1.73
601 602 8.104566 TCCTATTTCGGTTTTTCTTCTGGATTA 58.895 33.333 0.00 0.00 0.00 1.75
602 603 6.946009 TCCTATTTCGGTTTTTCTTCTGGATT 59.054 34.615 0.00 0.00 0.00 3.01
605 606 6.759497 ATCCTATTTCGGTTTTTCTTCTGG 57.241 37.500 0.00 0.00 0.00 3.86
606 607 8.296713 TGAAATCCTATTTCGGTTTTTCTTCTG 58.703 33.333 7.63 0.00 33.00 3.02
607 608 8.404107 TGAAATCCTATTTCGGTTTTTCTTCT 57.596 30.769 7.63 0.00 33.00 2.85
608 609 9.076596 CATGAAATCCTATTTCGGTTTTTCTTC 57.923 33.333 7.63 0.00 33.00 2.87
609 610 8.585018 ACATGAAATCCTATTTCGGTTTTTCTT 58.415 29.630 0.00 0.00 33.00 2.52
617 2226 3.004734 GGGCACATGAAATCCTATTTCGG 59.995 47.826 0.00 5.50 0.00 4.30
625 2234 0.887933 ACAACGGGCACATGAAATCC 59.112 50.000 0.00 0.00 0.00 3.01
626 2235 1.135402 GGACAACGGGCACATGAAATC 60.135 52.381 0.00 0.00 0.00 2.17
629 2238 0.605319 GAGGACAACGGGCACATGAA 60.605 55.000 0.00 0.00 0.00 2.57
676 2314 4.288887 AGGTTTTTCTTCCGGAATAGGAGT 59.711 41.667 19.21 0.00 41.98 3.85
677 2315 4.844884 AGGTTTTTCTTCCGGAATAGGAG 58.155 43.478 19.21 5.42 41.98 3.69
678 2316 4.287585 TGAGGTTTTTCTTCCGGAATAGGA 59.712 41.667 19.21 9.09 38.79 2.94
679 2317 4.585879 TGAGGTTTTTCTTCCGGAATAGG 58.414 43.478 19.21 6.45 33.53 2.57
680 2318 5.246307 ACTGAGGTTTTTCTTCCGGAATAG 58.754 41.667 19.21 7.15 33.53 1.73
681 2319 5.237236 ACTGAGGTTTTTCTTCCGGAATA 57.763 39.130 19.21 7.96 33.53 1.75
682 2320 4.100279 ACTGAGGTTTTTCTTCCGGAAT 57.900 40.909 19.21 0.00 33.53 3.01
683 2321 3.570912 ACTGAGGTTTTTCTTCCGGAA 57.429 42.857 17.73 17.73 0.00 4.30
684 2322 4.903045 ATACTGAGGTTTTTCTTCCGGA 57.097 40.909 0.00 0.00 0.00 5.14
685 2323 5.484715 TGTATACTGAGGTTTTTCTTCCGG 58.515 41.667 4.17 0.00 0.00 5.14
686 2324 6.594159 ACATGTATACTGAGGTTTTTCTTCCG 59.406 38.462 0.00 0.00 0.00 4.30
687 2325 7.923414 ACATGTATACTGAGGTTTTTCTTCC 57.077 36.000 0.00 0.00 0.00 3.46
688 2326 9.220767 AGAACATGTATACTGAGGTTTTTCTTC 57.779 33.333 0.00 0.00 0.00 2.87
689 2327 9.220767 GAGAACATGTATACTGAGGTTTTTCTT 57.779 33.333 0.00 0.00 0.00 2.52
690 2328 8.598041 AGAGAACATGTATACTGAGGTTTTTCT 58.402 33.333 0.00 4.32 0.00 2.52
691 2329 8.779354 AGAGAACATGTATACTGAGGTTTTTC 57.221 34.615 0.00 2.39 0.00 2.29
695 2333 9.201989 TGAATAGAGAACATGTATACTGAGGTT 57.798 33.333 0.00 0.00 0.00 3.50
735 2373 1.550524 TCGCATGGTAAGAGCAACTCT 59.449 47.619 0.00 0.00 43.37 3.24
748 2386 6.074302 GGCGTATACATATTAATCTCGCATGG 60.074 42.308 3.32 0.00 42.27 3.66
760 2398 4.884744 TGTTTGCTTGGGCGTATACATATT 59.115 37.500 3.32 0.00 42.25 1.28
843 3294 2.060383 TGAGCTCCACCTGATCCGG 61.060 63.158 12.15 0.91 0.00 5.14
958 3418 0.176680 CTACAAGCTGCCGAGACCAT 59.823 55.000 0.00 0.00 0.00 3.55
1248 3729 1.845809 GCTCCACAACGAAGTGCAGG 61.846 60.000 6.50 0.52 45.00 4.85
1249 3730 1.571460 GCTCCACAACGAAGTGCAG 59.429 57.895 6.50 3.13 45.00 4.41
1250 3731 2.243957 CGCTCCACAACGAAGTGCA 61.244 57.895 6.50 0.00 45.00 4.57
1251 3732 2.551270 CGCTCCACAACGAAGTGC 59.449 61.111 6.50 0.00 45.00 4.40
1252 3733 2.954753 GCCGCTCCACAACGAAGTG 61.955 63.158 0.00 0.00 45.00 3.16
1271 3752 2.408050 CTCACCCTGAACAAGAACTCG 58.592 52.381 0.00 0.00 0.00 4.18
1295 3776 0.727398 GGCAGACAAATCCACTACGC 59.273 55.000 0.00 0.00 0.00 4.42
1429 3910 4.966005 GGAAAAGCCGCAACCTTC 57.034 55.556 0.00 0.00 0.00 3.46
1483 3995 0.108804 TTCGTCGACCTGGAATCTGC 60.109 55.000 10.58 0.00 0.00 4.26
1994 4555 1.745489 AGCGAATTTGGCCGAGGAC 60.745 57.895 0.00 0.00 0.00 3.85
2104 4665 1.728971 CATCTGAAGACGCCTTGTGAC 59.271 52.381 0.00 0.00 31.62 3.67
2120 4681 3.689347 TGCATCACAAGGTAAAGCATCT 58.311 40.909 0.00 0.00 0.00 2.90
2303 4864 2.618816 CCATGCAAGCCTCTTTACCTGA 60.619 50.000 0.00 0.00 0.00 3.86
2339 4900 3.521560 GCCATCAACATAGAACGTCTGA 58.478 45.455 0.00 0.00 0.00 3.27
2363 4924 3.314331 CAGAGCACCTCCACGGGT 61.314 66.667 0.00 0.00 40.73 5.28
2557 5118 4.542390 ATCTGCCATCGCGCTGCT 62.542 61.111 5.56 0.00 38.08 4.24
2558 5119 2.978598 GAAATCTGCCATCGCGCTGC 62.979 60.000 5.56 5.91 38.08 5.25
2559 5120 1.010350 GAAATCTGCCATCGCGCTG 60.010 57.895 5.56 0.48 38.08 5.18
2589 5151 2.826428 AGGATTCGTTCATCCGATGTG 58.174 47.619 8.24 0.83 46.77 3.21
2622 5184 3.827008 TGTTAGGCTTGCTAGATCCTG 57.173 47.619 0.00 0.00 0.00 3.86
2709 5271 8.800332 GCCAAATCATATGGATAGATCAAAACT 58.200 33.333 2.13 0.00 40.56 2.66
2760 5323 6.344500 ACAAATGGAGTACTAGAATCAGCTG 58.656 40.000 7.63 7.63 0.00 4.24
2761 5324 6.382570 AGACAAATGGAGTACTAGAATCAGCT 59.617 38.462 0.00 0.00 0.00 4.24
2774 5337 4.524328 GTGGAATGGAAAGACAAATGGAGT 59.476 41.667 0.00 0.00 0.00 3.85
2793 5356 0.821301 TTCACAATGCGCAAGGTGGA 60.821 50.000 31.55 25.74 38.28 4.02
2829 5392 7.875554 AGTAGCAGGAAACAACTTTTTGAAAAA 59.124 29.630 2.83 2.83 36.48 1.94
2830 5393 7.382898 AGTAGCAGGAAACAACTTTTTGAAAA 58.617 30.769 0.00 0.00 36.48 2.29
2834 5397 5.973565 CAGAGTAGCAGGAAACAACTTTTTG 59.026 40.000 0.00 0.00 38.83 2.44
2847 5410 2.344950 CAAAGAGTGCAGAGTAGCAGG 58.655 52.381 0.00 0.00 46.69 4.85
2910 5473 5.859521 TTCGAAGTCAGTAGTCACTCTAC 57.140 43.478 0.00 0.00 46.68 2.59
2912 5475 5.769484 TTTTCGAAGTCAGTAGTCACTCT 57.231 39.130 0.00 0.00 30.46 3.24
2941 5504 2.938451 TCATTATCTTTGCCAGACTGCG 59.062 45.455 0.00 0.00 32.83 5.18
2967 5889 6.267471 TGGTTAAGAAATGAAACCTGCTGATT 59.733 34.615 5.19 0.00 42.60 2.57
2970 5892 5.452078 TGGTTAAGAAATGAAACCTGCTG 57.548 39.130 5.19 0.00 42.60 4.41
2972 5894 5.095490 CGATGGTTAAGAAATGAAACCTGC 58.905 41.667 5.19 0.00 42.60 4.85
2974 5896 4.764823 TGCGATGGTTAAGAAATGAAACCT 59.235 37.500 5.19 0.00 42.60 3.50
2975 5897 5.054390 TGCGATGGTTAAGAAATGAAACC 57.946 39.130 0.00 0.00 42.49 3.27
2977 5899 6.206634 AGTTCTGCGATGGTTAAGAAATGAAA 59.793 34.615 0.00 0.00 30.85 2.69
2978 5900 5.705441 AGTTCTGCGATGGTTAAGAAATGAA 59.295 36.000 0.00 0.00 30.85 2.57
2979 5901 5.245531 AGTTCTGCGATGGTTAAGAAATGA 58.754 37.500 0.00 0.00 30.85 2.57
2980 5902 5.352569 AGAGTTCTGCGATGGTTAAGAAATG 59.647 40.000 0.00 0.00 30.85 2.32
2981 5903 5.352569 CAGAGTTCTGCGATGGTTAAGAAAT 59.647 40.000 0.00 0.00 37.15 2.17
2983 5905 4.021456 TCAGAGTTCTGCGATGGTTAAGAA 60.021 41.667 4.25 0.00 43.46 2.52
2984 5906 3.509967 TCAGAGTTCTGCGATGGTTAAGA 59.490 43.478 4.25 0.00 43.46 2.10
2985 5907 3.849911 TCAGAGTTCTGCGATGGTTAAG 58.150 45.455 4.25 0.00 43.46 1.85
2986 5908 3.849911 CTCAGAGTTCTGCGATGGTTAA 58.150 45.455 4.25 0.00 43.46 2.01
2987 5909 2.417379 GCTCAGAGTTCTGCGATGGTTA 60.417 50.000 4.25 0.00 43.46 2.85
2988 5910 1.674221 GCTCAGAGTTCTGCGATGGTT 60.674 52.381 4.25 0.00 43.46 3.67
2989 5911 0.108424 GCTCAGAGTTCTGCGATGGT 60.108 55.000 4.25 0.00 43.46 3.55
2990 5912 0.108472 TGCTCAGAGTTCTGCGATGG 60.108 55.000 4.25 0.00 43.46 3.51
2991 5913 1.593469 CATGCTCAGAGTTCTGCGATG 59.407 52.381 4.25 3.22 43.46 3.84
2992 5914 1.937278 CATGCTCAGAGTTCTGCGAT 58.063 50.000 4.25 0.00 43.46 4.58
2993 5915 0.738762 GCATGCTCAGAGTTCTGCGA 60.739 55.000 11.37 0.00 43.46 5.10
2994 5916 0.740164 AGCATGCTCAGAGTTCTGCG 60.740 55.000 16.30 0.00 43.46 5.18
2995 5917 0.727970 CAGCATGCTCAGAGTTCTGC 59.272 55.000 19.68 11.10 43.46 4.26
3008 5930 3.138798 GAGGGGCAGTGCAGCATG 61.139 66.667 18.61 0.00 40.87 4.06
3009 5931 4.437587 GGAGGGGCAGTGCAGCAT 62.438 66.667 18.61 0.00 35.83 3.79
3012 5934 4.421515 CTGGGAGGGGCAGTGCAG 62.422 72.222 18.61 0.00 0.00 4.41
3014 5936 4.729918 CACTGGGAGGGGCAGTGC 62.730 72.222 6.55 6.55 39.61 4.40
3016 5938 3.252284 CACACTGGGAGGGGCAGT 61.252 66.667 0.00 0.00 0.00 4.40
3017 5939 4.729918 GCACACTGGGAGGGGCAG 62.730 72.222 0.00 0.00 0.00 4.85
3019 5941 4.729918 CTGCACACTGGGAGGGGC 62.730 72.222 0.00 0.00 0.00 5.80
3020 5942 3.252284 ACTGCACACTGGGAGGGG 61.252 66.667 0.00 0.00 0.00 4.79
3021 5943 2.033141 CACTGCACACTGGGAGGG 59.967 66.667 0.00 0.00 0.00 4.30
3022 5944 1.598962 CACACTGCACACTGGGAGG 60.599 63.158 0.00 0.00 0.00 4.30
3023 5945 2.256591 GCACACTGCACACTGGGAG 61.257 63.158 0.00 0.00 44.26 4.30
3024 5946 2.203195 GCACACTGCACACTGGGA 60.203 61.111 0.00 0.00 44.26 4.37
3059 5981 5.374921 GACAGGAGGATCAATCATCAACAT 58.625 41.667 6.94 0.00 39.21 2.71
3060 5982 4.384537 GGACAGGAGGATCAATCATCAACA 60.385 45.833 6.94 0.00 39.21 3.33
3085 6007 5.761165 TTTGGGCAACTTCTGTAGTTAAC 57.239 39.130 0.00 0.00 45.29 2.01
3108 6036 4.668289 GCGAGAAAAAGAAAACTTCCACA 58.332 39.130 0.00 0.00 0.00 4.17
3120 8047 2.080286 TTCCCTCTCGCGAGAAAAAG 57.920 50.000 35.84 24.72 41.32 2.27
3126 8053 0.737715 CCACTTTTCCCTCTCGCGAG 60.738 60.000 30.03 30.03 37.01 5.03
3128 8055 0.320421 TTCCACTTTTCCCTCTCGCG 60.320 55.000 0.00 0.00 0.00 5.87
3129 8056 1.270893 ACTTCCACTTTTCCCTCTCGC 60.271 52.381 0.00 0.00 0.00 5.03
3130 8057 2.037251 TGACTTCCACTTTTCCCTCTCG 59.963 50.000 0.00 0.00 0.00 4.04
3131 8058 3.771577 TGACTTCCACTTTTCCCTCTC 57.228 47.619 0.00 0.00 0.00 3.20
3132 8059 4.519906 TTTGACTTCCACTTTTCCCTCT 57.480 40.909 0.00 0.00 0.00 3.69
3134 8061 4.962362 ACATTTTGACTTCCACTTTTCCCT 59.038 37.500 0.00 0.00 0.00 4.20
3136 8063 5.163457 TGGACATTTTGACTTCCACTTTTCC 60.163 40.000 0.00 0.00 33.02 3.13
3137 8064 5.901552 TGGACATTTTGACTTCCACTTTTC 58.098 37.500 0.00 0.00 33.02 2.29
3138 8065 5.930837 TGGACATTTTGACTTCCACTTTT 57.069 34.783 0.00 0.00 33.02 2.27
3142 8069 4.808895 GGTTTTGGACATTTTGACTTCCAC 59.191 41.667 0.00 0.00 37.88 4.02
3179 8106 9.000486 GCTCAACTTTCACCTTTTAACTAGTAT 58.000 33.333 0.00 0.00 0.00 2.12
3282 8483 3.772025 CAGAGGGAGGATGTTCAGTAACT 59.228 47.826 0.00 0.00 36.51 2.24
3360 8561 6.942976 TCCGTCCTAAAATTAGTGTCTCAAT 58.057 36.000 0.00 0.00 0.00 2.57
3445 8646 9.322776 GACAATTAGAATAAATAATCTGCGCTG 57.677 33.333 9.73 8.88 0.00 5.18
3471 8672 5.189659 AGGAACTAGCAGCGAGTATAAAG 57.810 43.478 8.78 0.00 36.02 1.85
3486 8687 7.442364 GTGCATGATATTCTGCTAAAGGAACTA 59.558 37.037 0.00 0.00 37.12 2.24
3555 8757 4.154942 ACAGGCTCAAAAAGATTGGACAT 58.845 39.130 0.00 0.00 0.00 3.06
3676 8878 8.715998 CATTACTTTGAGGATATTTGGAGATCG 58.284 37.037 0.00 0.00 0.00 3.69
3719 8921 4.728772 TCATCAACACCCACAAGAAAGAT 58.271 39.130 0.00 0.00 0.00 2.40
3720 8922 4.163441 TCATCAACACCCACAAGAAAGA 57.837 40.909 0.00 0.00 0.00 2.52
3721 8923 4.499696 GGTTCATCAACACCCACAAGAAAG 60.500 45.833 0.00 0.00 33.70 2.62
3722 8924 3.383185 GGTTCATCAACACCCACAAGAAA 59.617 43.478 0.00 0.00 33.70 2.52
3723 8925 2.955660 GGTTCATCAACACCCACAAGAA 59.044 45.455 0.00 0.00 33.70 2.52
3724 8926 2.582052 GGTTCATCAACACCCACAAGA 58.418 47.619 0.00 0.00 33.70 3.02
3732 8934 1.826385 CTCAGGGGGTTCATCAACAC 58.174 55.000 0.00 0.00 34.83 3.32
3733 8935 0.038166 GCTCAGGGGGTTCATCAACA 59.962 55.000 0.00 0.00 33.70 3.33
3734 8936 0.329596 AGCTCAGGGGGTTCATCAAC 59.670 55.000 0.00 0.00 0.00 3.18
3735 8937 0.620556 GAGCTCAGGGGGTTCATCAA 59.379 55.000 9.40 0.00 0.00 2.57
3736 8938 1.274703 GGAGCTCAGGGGGTTCATCA 61.275 60.000 17.19 0.00 0.00 3.07
3737 8939 1.274703 TGGAGCTCAGGGGGTTCATC 61.275 60.000 17.19 0.00 0.00 2.92
3738 8940 1.229951 TGGAGCTCAGGGGGTTCAT 60.230 57.895 17.19 0.00 0.00 2.57
3739 8941 2.206900 TGGAGCTCAGGGGGTTCA 59.793 61.111 17.19 0.00 0.00 3.18
3740 8942 2.671682 GTGGAGCTCAGGGGGTTC 59.328 66.667 17.19 0.00 0.00 3.62
3741 8943 3.322466 CGTGGAGCTCAGGGGGTT 61.322 66.667 17.19 0.00 0.00 4.11
3742 8944 2.741878 TAACGTGGAGCTCAGGGGGT 62.742 60.000 17.19 2.50 35.71 4.95
3770 8972 8.200792 ACAGCTAGATCAAATAGTTTGGACTAG 58.799 37.037 19.49 19.49 41.45 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.