Multiple sequence alignment - TraesCS2D01G203200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G203200 chr2D 100.000 3981 0 0 1 3981 155478626 155474646 0.000000e+00 7352.0
1 TraesCS2D01G203200 chr2D 78.546 853 136 29 1733 2567 1588814 1589637 5.900000e-143 518.0
2 TraesCS2D01G203200 chr2D 82.065 368 63 3 3613 3978 544252796 544252430 1.070000e-80 311.0
3 TraesCS2D01G203200 chr2D 83.030 330 55 1 3611 3939 644275063 644274734 8.360000e-77 298.0
4 TraesCS2D01G203200 chr2B 93.294 3236 140 33 1 3200 212774046 212770852 0.000000e+00 4702.0
5 TraesCS2D01G203200 chr2B 76.889 1350 246 48 1221 2533 10597544 10598864 0.000000e+00 704.0
6 TraesCS2D01G203200 chr2B 80.044 907 137 30 1639 2537 10356939 10357809 2.020000e-177 632.0
7 TraesCS2D01G203200 chr2B 90.559 286 11 3 3332 3612 212770578 212770304 8.130000e-97 364.0
8 TraesCS2D01G203200 chr2B 100.000 28 0 0 3204 3231 212770806 212770779 7.000000e-03 52.8
9 TraesCS2D01G203200 chr2A 91.082 1626 74 27 1 1589 144849038 144850629 0.000000e+00 2134.0
10 TraesCS2D01G203200 chr2A 96.154 1144 41 3 1601 2741 144850687 144851830 0.000000e+00 1866.0
11 TraesCS2D01G203200 chr2A 92.324 482 23 9 2730 3200 144852363 144852841 0.000000e+00 673.0
12 TraesCS2D01G203200 chr2A 100.000 31 0 0 523 553 510302671 510302641 1.550000e-04 58.4
13 TraesCS2D01G203200 chr6A 90.736 367 33 1 3613 3978 404868960 404868594 4.620000e-134 488.0
14 TraesCS2D01G203200 chr4A 87.705 366 44 1 3613 3978 501784100 501783736 3.680000e-115 425.0
15 TraesCS2D01G203200 chr7B 94.332 247 12 1 3271 3517 708066141 708066385 1.040000e-100 377.0
16 TraesCS2D01G203200 chr5D 85.359 362 50 3 3613 3974 437844497 437844855 4.860000e-99 372.0
17 TraesCS2D01G203200 chr5D 81.763 329 55 5 3613 3939 72832933 72832608 1.820000e-68 270.0
18 TraesCS2D01G203200 chr5D 80.064 311 60 2 3630 3939 117711061 117710752 3.090000e-56 230.0
19 TraesCS2D01G203200 chr5D 88.000 50 4 2 523 570 349372419 349372370 1.550000e-04 58.4
20 TraesCS2D01G203200 chr6D 83.537 328 52 2 3613 3939 29253203 29252877 5.000000e-79 305.0
21 TraesCS2D01G203200 chr1D 79.385 325 65 2 3616 3939 296968179 296967856 1.110000e-55 228.0
22 TraesCS2D01G203200 chr1D 91.111 45 2 2 526 569 475602526 475602569 4.300000e-05 60.2
23 TraesCS2D01G203200 chr4D 75.410 244 60 0 1251 1494 65075793 65075550 6.990000e-23 119.0
24 TraesCS2D01G203200 chr6B 94.737 38 1 1 527 563 173027536 173027573 1.550000e-04 58.4
25 TraesCS2D01G203200 chr5B 100.000 31 0 0 523 553 409870498 409870468 1.550000e-04 58.4
26 TraesCS2D01G203200 chr5A 96.875 32 1 0 523 554 659894286 659894255 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G203200 chr2D 155474646 155478626 3980 True 7352.000000 7352 100.000000 1 3981 1 chr2D.!!$R1 3980
1 TraesCS2D01G203200 chr2D 1588814 1589637 823 False 518.000000 518 78.546000 1733 2567 1 chr2D.!!$F1 834
2 TraesCS2D01G203200 chr2B 212770304 212774046 3742 True 1706.266667 4702 94.617667 1 3612 3 chr2B.!!$R1 3611
3 TraesCS2D01G203200 chr2B 10597544 10598864 1320 False 704.000000 704 76.889000 1221 2533 1 chr2B.!!$F2 1312
4 TraesCS2D01G203200 chr2B 10356939 10357809 870 False 632.000000 632 80.044000 1639 2537 1 chr2B.!!$F1 898
5 TraesCS2D01G203200 chr2A 144849038 144852841 3803 False 1557.666667 2134 93.186667 1 3200 3 chr2A.!!$F1 3199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 857 0.182299 CTCTTCCCAGCTTGGATCCC 59.818 60.0 9.90 0.0 40.96 3.85 F
1368 1418 0.599558 AGTTAGTTGCGTACTGCCGA 59.400 50.0 7.13 0.0 45.60 5.54 F
2135 2252 1.571773 GGGTACATGGCCCCAGAGTT 61.572 60.0 15.19 0.0 40.88 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2623 2771 2.955614 TGCTCAGCCTACGAAAACTAC 58.044 47.619 0.0 0.0 0.00 2.73 R
2929 3625 0.930310 CACATGTTAGCATCGGTCGG 59.070 55.000 0.0 0.0 31.99 4.79 R
3697 4597 0.034089 GCAAGCATGGGGGAGTACTT 60.034 55.000 0.0 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.753921 AGTTCTATACCAGAAATAAGCGTGC 59.246 40.000 0.00 0.00 44.89 5.34
197 200 2.254546 ATGCTGGTTGTTCGTGAAGA 57.745 45.000 0.00 0.00 0.00 2.87
204 207 4.204012 TGGTTGTTCGTGAAGAAATTCCT 58.796 39.130 0.00 0.00 41.10 3.36
256 259 8.215132 CGTGTACTTCTAATCTGACAGTTTTTC 58.785 37.037 1.59 0.00 0.00 2.29
271 274 5.233689 ACAGTTTTTCTTAGTCACGTACTGC 59.766 40.000 6.60 0.00 39.39 4.40
285 288 2.728922 GTACTGCCCGAAGTTCTATCG 58.271 52.381 0.56 0.00 39.92 2.92
403 411 4.445718 GCTCGTGACTACACATGAATATGG 59.554 45.833 0.00 0.00 46.20 2.74
416 425 1.670811 GAATATGGCGTGTGGACTTGG 59.329 52.381 0.00 0.00 0.00 3.61
451 460 7.148641 GCTTCCTGTCTCAGAAAATATATCGA 58.851 38.462 0.00 0.00 32.44 3.59
485 494 7.148590 GCGTGATGCACTTGATATGAACATATA 60.149 37.037 7.21 0.00 45.45 0.86
486 495 8.876790 CGTGATGCACTTGATATGAACATATAT 58.123 33.333 7.21 0.00 31.71 0.86
497 506 8.470002 TGATATGAACATATATCGAGTTGAGGG 58.530 37.037 7.21 0.00 41.05 4.30
597 609 5.000591 TGACCGAAATTATCTGCTGACAAA 58.999 37.500 0.00 0.00 0.00 2.83
623 635 6.959639 AGCTGAACCAAAAGTAAAATCAGA 57.040 33.333 4.20 0.00 33.26 3.27
624 636 6.739112 AGCTGAACCAAAAGTAAAATCAGAC 58.261 36.000 4.20 0.00 33.26 3.51
625 637 5.920840 GCTGAACCAAAAGTAAAATCAGACC 59.079 40.000 4.20 0.00 33.26 3.85
750 779 1.141657 CATAGTAGTGGGCAGTGGCAT 59.858 52.381 19.48 6.28 43.71 4.40
752 781 1.200760 AGTAGTGGGCAGTGGCATCA 61.201 55.000 19.48 5.23 43.71 3.07
791 820 9.414295 CTATTCATCTCAGATCTGAAGTTCATC 57.586 37.037 25.09 2.04 39.39 2.92
801 830 1.081174 TGAAGTTCATCCCCTCTCCCT 59.919 52.381 0.08 0.00 0.00 4.20
805 834 1.274703 TTCATCCCCTCTCCCTGTGC 61.275 60.000 0.00 0.00 0.00 4.57
826 857 0.182299 CTCTTCCCAGCTTGGATCCC 59.818 60.000 9.90 0.00 40.96 3.85
866 910 1.211703 TCCAAGGTCAGTGCACTTGAA 59.788 47.619 18.94 2.54 43.13 2.69
880 924 3.979495 GCACTTGAAGAACTGCTCAATTG 59.021 43.478 0.00 0.00 0.00 2.32
885 929 4.847633 TGAAGAACTGCTCAATTGTTTCG 58.152 39.130 5.13 0.00 0.00 3.46
893 937 5.700832 ACTGCTCAATTGTTTCGAGATACAA 59.299 36.000 5.13 10.56 36.85 2.41
923 969 4.629634 TGCGTACTTAATCAGTGATGTTGG 59.370 41.667 6.34 0.67 35.97 3.77
959 1006 2.253603 CTTTCCTAAATTGCACGCTGC 58.746 47.619 0.00 3.44 45.29 5.25
1158 1205 6.215845 ACTGTATGATTTTGCCACAACTTTC 58.784 36.000 0.00 0.00 0.00 2.62
1209 1256 9.662947 GGAAGGTGCTAAGTTAGATTAGTTTTA 57.337 33.333 14.27 0.00 35.57 1.52
1251 1301 1.745489 GGACGATGGAGTGGTTGCC 60.745 63.158 0.00 0.00 0.00 4.52
1353 1403 5.915196 CGAGCATGAGAATATCGTCAAGTTA 59.085 40.000 0.00 0.00 0.00 2.24
1359 1409 5.515270 TGAGAATATCGTCAAGTTAGTTGCG 59.485 40.000 9.23 9.23 37.16 4.85
1368 1418 0.599558 AGTTAGTTGCGTACTGCCGA 59.400 50.000 7.13 0.00 45.60 5.54
1412 1462 4.323868 GCAGAGCAACGGACGATATATTAC 59.676 45.833 0.00 0.00 0.00 1.89
1509 1575 8.982685 GGTATGTCATATATCATTTGCTATCCG 58.017 37.037 0.00 0.00 0.00 4.18
1634 1747 9.498176 CATCACATGTTATGGATAGAAGAATCA 57.502 33.333 11.51 0.00 33.60 2.57
1636 1749 9.716531 TCACATGTTATGGATAGAAGAATCATC 57.283 33.333 0.00 0.00 33.60 2.92
1824 1941 9.628500 AAATAATAAAGGGAGTATGTGAAGGTC 57.372 33.333 0.00 0.00 0.00 3.85
2062 2179 8.892723 TCCTATACTGTAATGCAAAACTCATTG 58.107 33.333 0.00 0.00 35.87 2.82
2135 2252 1.571773 GGGTACATGGCCCCAGAGTT 61.572 60.000 15.19 0.00 40.88 3.01
2595 2743 6.603599 GGCTCCCTGTTGAGAATAGTTAATTT 59.396 38.462 0.00 0.00 34.11 1.82
2952 3648 2.346803 ACCGATGCTAACATGTGTCAC 58.653 47.619 0.00 0.00 36.35 3.67
2965 3661 4.405358 ACATGTGTCACCAAATTTCAGGTT 59.595 37.500 0.00 0.00 35.52 3.50
3015 3721 3.743521 CACTTTTCAGTGGGAGATGTCA 58.256 45.455 0.00 0.00 46.10 3.58
3041 3747 9.480053 AAACATCAAGTAAAACAAGATCAATGG 57.520 29.630 0.00 0.00 0.00 3.16
3201 3908 5.685520 AGTTTTACTTCCTCTGGAGATCC 57.314 43.478 0.00 0.00 31.21 3.36
3237 4132 4.697352 CCTTTTCATGTCAGTTCAGTAGGG 59.303 45.833 0.00 0.00 0.00 3.53
3319 4214 9.906660 TGATTATTAAACAATGACACAAGGAAC 57.093 29.630 0.00 0.00 0.00 3.62
3324 4219 9.965824 ATTAAACAATGACACAAGGAACTAAAG 57.034 29.630 0.00 0.00 38.49 1.85
3325 4220 7.404671 AAACAATGACACAAGGAACTAAAGT 57.595 32.000 0.00 0.00 38.49 2.66
3326 4221 7.404671 AACAATGACACAAGGAACTAAAGTT 57.595 32.000 0.00 0.00 38.49 2.66
3327 4222 6.795399 ACAATGACACAAGGAACTAAAGTTG 58.205 36.000 0.00 0.00 38.49 3.16
3328 4223 6.601613 ACAATGACACAAGGAACTAAAGTTGA 59.398 34.615 0.00 0.00 38.49 3.18
3329 4224 6.619801 ATGACACAAGGAACTAAAGTTGAC 57.380 37.500 0.00 0.00 38.49 3.18
3330 4225 4.879545 TGACACAAGGAACTAAAGTTGACC 59.120 41.667 0.00 0.00 38.49 4.02
3331 4226 4.204799 ACACAAGGAACTAAAGTTGACCC 58.795 43.478 0.00 0.00 38.49 4.46
3332 4227 4.079958 ACACAAGGAACTAAAGTTGACCCT 60.080 41.667 0.00 0.00 38.49 4.34
3333 4228 5.131475 ACACAAGGAACTAAAGTTGACCCTA 59.869 40.000 0.00 0.00 38.49 3.53
3334 4229 6.059484 CACAAGGAACTAAAGTTGACCCTAA 58.941 40.000 0.00 0.00 38.49 2.69
3359 4254 6.653989 TGATTTTCTCTTCTACCTTCATCCC 58.346 40.000 0.00 0.00 0.00 3.85
3391 4286 2.197324 CCTCCTCCTCTCCTCCCG 59.803 72.222 0.00 0.00 0.00 5.14
3479 4374 3.302365 ACACAAGTTACCATGCAATGC 57.698 42.857 0.00 0.00 44.97 3.56
3489 4384 2.827322 ACCATGCAATGCTGTGTACATT 59.173 40.909 6.82 0.00 44.97 2.71
3490 4385 4.015764 ACCATGCAATGCTGTGTACATTA 58.984 39.130 6.82 0.00 44.97 1.90
3518 4413 7.514784 AAATGCTATGCAAATGCTACATAGA 57.485 32.000 12.21 0.46 43.86 1.98
3548 4448 0.388778 CATGCGCAGACAAAATGCCA 60.389 50.000 18.32 0.00 40.67 4.92
3554 4454 2.063266 GCAGACAAAATGCCACACATG 58.937 47.619 0.00 0.00 39.60 3.21
3580 4480 9.353999 GATACATAAAAGGCACTAAAAAGTTGG 57.646 33.333 0.00 0.00 38.49 3.77
3582 4482 3.469008 AAAGGCACTAAAAAGTTGGCC 57.531 42.857 0.00 0.00 38.49 5.36
3584 4484 0.955905 GGCACTAAAAAGTTGGCCGA 59.044 50.000 0.00 0.00 0.00 5.54
3612 4512 5.627499 TTGAATGAAGTTGATAGGCACAC 57.373 39.130 0.00 0.00 0.00 3.82
3613 4513 4.650734 TGAATGAAGTTGATAGGCACACA 58.349 39.130 0.00 0.00 0.00 3.72
3614 4514 5.069318 TGAATGAAGTTGATAGGCACACAA 58.931 37.500 0.00 0.00 0.00 3.33
3615 4515 5.181811 TGAATGAAGTTGATAGGCACACAAG 59.818 40.000 0.00 0.00 0.00 3.16
3616 4516 3.411446 TGAAGTTGATAGGCACACAAGG 58.589 45.455 0.00 0.00 0.00 3.61
3617 4517 3.072330 TGAAGTTGATAGGCACACAAGGA 59.928 43.478 0.00 0.00 0.00 3.36
3618 4518 3.340814 AGTTGATAGGCACACAAGGAG 57.659 47.619 0.00 0.00 0.00 3.69
3619 4519 2.639839 AGTTGATAGGCACACAAGGAGT 59.360 45.455 0.00 0.00 0.00 3.85
3627 4527 4.680237 CACAAGGAGTGCCGCCGA 62.680 66.667 0.00 0.00 42.15 5.54
3628 4528 3.706373 ACAAGGAGTGCCGCCGAT 61.706 61.111 0.00 0.00 39.96 4.18
3629 4529 2.892425 CAAGGAGTGCCGCCGATC 60.892 66.667 0.00 0.00 39.96 3.69
3630 4530 3.390521 AAGGAGTGCCGCCGATCA 61.391 61.111 0.00 0.00 39.96 2.92
3631 4531 3.376935 AAGGAGTGCCGCCGATCAG 62.377 63.158 0.00 0.00 39.96 2.90
3633 4533 4.521062 GAGTGCCGCCGATCAGCT 62.521 66.667 0.00 0.00 0.00 4.24
3634 4534 4.521062 AGTGCCGCCGATCAGCTC 62.521 66.667 0.00 0.00 0.00 4.09
3641 4541 4.193334 CCGATCAGCTCGCGACCA 62.193 66.667 3.71 0.00 46.25 4.02
3642 4542 2.951745 CGATCAGCTCGCGACCAC 60.952 66.667 3.71 0.00 41.14 4.16
3643 4543 2.492090 GATCAGCTCGCGACCACT 59.508 61.111 3.71 0.00 0.00 4.00
3644 4544 1.587613 GATCAGCTCGCGACCACTC 60.588 63.158 3.71 0.00 0.00 3.51
3645 4545 2.945398 GATCAGCTCGCGACCACTCC 62.945 65.000 3.71 0.00 0.00 3.85
3646 4546 3.753434 CAGCTCGCGACCACTCCT 61.753 66.667 3.71 0.00 0.00 3.69
3647 4547 2.992114 AGCTCGCGACCACTCCTT 60.992 61.111 3.71 0.00 0.00 3.36
3648 4548 2.507324 GCTCGCGACCACTCCTTC 60.507 66.667 3.71 0.00 0.00 3.46
3649 4549 2.995872 GCTCGCGACCACTCCTTCT 61.996 63.158 3.71 0.00 0.00 2.85
3650 4550 1.587054 CTCGCGACCACTCCTTCTT 59.413 57.895 3.71 0.00 0.00 2.52
3651 4551 0.456995 CTCGCGACCACTCCTTCTTC 60.457 60.000 3.71 0.00 0.00 2.87
3652 4552 1.176619 TCGCGACCACTCCTTCTTCA 61.177 55.000 3.71 0.00 0.00 3.02
3653 4553 0.319555 CGCGACCACTCCTTCTTCAA 60.320 55.000 0.00 0.00 0.00 2.69
3654 4554 1.433534 GCGACCACTCCTTCTTCAAG 58.566 55.000 0.00 0.00 0.00 3.02
3665 4565 3.892918 CTTCTTCAAGGACAAGCTGTG 57.107 47.619 0.00 0.00 0.00 3.66
3666 4566 1.597742 TCTTCAAGGACAAGCTGTGC 58.402 50.000 0.00 0.00 39.13 4.57
3667 4567 0.595095 CTTCAAGGACAAGCTGTGCC 59.405 55.000 0.00 0.00 39.72 5.01
3668 4568 1.165907 TTCAAGGACAAGCTGTGCCG 61.166 55.000 0.00 0.00 39.72 5.69
3669 4569 1.893808 CAAGGACAAGCTGTGCCGT 60.894 57.895 0.00 0.00 39.72 5.68
3670 4570 0.602638 CAAGGACAAGCTGTGCCGTA 60.603 55.000 0.00 0.00 39.72 4.02
3671 4571 0.320771 AAGGACAAGCTGTGCCGTAG 60.321 55.000 0.00 0.00 39.72 3.51
3672 4572 1.004918 GGACAAGCTGTGCCGTAGT 60.005 57.895 0.00 0.00 32.15 2.73
3673 4573 1.291877 GGACAAGCTGTGCCGTAGTG 61.292 60.000 0.00 0.00 32.15 2.74
3674 4574 1.901650 GACAAGCTGTGCCGTAGTGC 61.902 60.000 0.00 0.00 0.00 4.40
3675 4575 2.738521 AAGCTGTGCCGTAGTGCG 60.739 61.111 0.00 0.00 40.95 5.34
3685 4585 4.152625 GTAGTGCGCGCCTTGCTG 62.153 66.667 30.77 0.00 43.27 4.41
3704 4604 3.160872 GCAAGGAGGCCAAGTACTC 57.839 57.895 5.01 0.00 0.00 2.59
3707 4607 3.321445 GGAGGCCAAGTACTCCCC 58.679 66.667 5.01 0.00 46.01 4.81
3708 4608 2.376165 GGAGGCCAAGTACTCCCCC 61.376 68.421 5.01 0.00 46.01 5.40
3709 4609 1.615424 GAGGCCAAGTACTCCCCCA 60.615 63.158 5.01 0.00 0.00 4.96
3710 4610 0.988678 GAGGCCAAGTACTCCCCCAT 60.989 60.000 5.01 0.00 0.00 4.00
3711 4611 1.227383 GGCCAAGTACTCCCCCATG 59.773 63.158 0.00 0.00 0.00 3.66
3712 4612 1.453928 GCCAAGTACTCCCCCATGC 60.454 63.158 0.00 0.00 0.00 4.06
3713 4613 1.926426 GCCAAGTACTCCCCCATGCT 61.926 60.000 0.00 0.00 0.00 3.79
3714 4614 0.625849 CCAAGTACTCCCCCATGCTT 59.374 55.000 0.00 0.00 0.00 3.91
3715 4615 1.683011 CCAAGTACTCCCCCATGCTTG 60.683 57.143 0.00 0.00 38.02 4.01
3716 4616 0.034089 AAGTACTCCCCCATGCTTGC 60.034 55.000 0.00 0.00 0.00 4.01
3717 4617 1.453928 GTACTCCCCCATGCTTGCC 60.454 63.158 0.00 0.00 0.00 4.52
3718 4618 1.928046 TACTCCCCCATGCTTGCCA 60.928 57.895 0.00 0.00 0.00 4.92
3719 4619 1.505151 TACTCCCCCATGCTTGCCAA 61.505 55.000 0.00 0.00 0.00 4.52
3720 4620 2.037687 TCCCCCATGCTTGCCAAG 59.962 61.111 0.00 0.00 0.00 3.61
3721 4621 3.078836 CCCCCATGCTTGCCAAGG 61.079 66.667 6.57 0.00 32.06 3.61
3722 4622 3.777910 CCCCATGCTTGCCAAGGC 61.778 66.667 6.57 3.61 42.35 4.35
3723 4623 3.777910 CCCATGCTTGCCAAGGCC 61.778 66.667 8.89 0.00 41.09 5.19
3724 4624 4.137872 CCATGCTTGCCAAGGCCG 62.138 66.667 8.89 0.79 41.09 6.13
3725 4625 3.376078 CATGCTTGCCAAGGCCGT 61.376 61.111 8.89 0.00 41.09 5.68
3726 4626 3.064324 ATGCTTGCCAAGGCCGTC 61.064 61.111 8.89 0.00 41.09 4.79
3727 4627 3.866379 ATGCTTGCCAAGGCCGTCA 62.866 57.895 8.89 3.82 41.09 4.35
3728 4628 3.294493 GCTTGCCAAGGCCGTCAA 61.294 61.111 8.89 0.00 41.09 3.18
3729 4629 2.855514 GCTTGCCAAGGCCGTCAAA 61.856 57.895 8.89 0.00 41.09 2.69
3730 4630 1.286880 CTTGCCAAGGCCGTCAAAG 59.713 57.895 8.89 1.20 41.09 2.77
3731 4631 2.753931 CTTGCCAAGGCCGTCAAAGC 62.754 60.000 8.89 0.00 41.09 3.51
3738 4638 4.056125 GCCGTCAAAGCCAAGGCC 62.056 66.667 7.62 0.00 41.81 5.19
3739 4639 3.737172 CCGTCAAAGCCAAGGCCG 61.737 66.667 7.62 3.59 43.17 6.13
3740 4640 4.404654 CGTCAAAGCCAAGGCCGC 62.405 66.667 7.62 0.00 43.17 6.53
3741 4641 2.985847 GTCAAAGCCAAGGCCGCT 60.986 61.111 7.62 0.00 43.17 5.52
3742 4642 2.672996 TCAAAGCCAAGGCCGCTC 60.673 61.111 7.62 0.00 43.17 5.03
3743 4643 4.107051 CAAAGCCAAGGCCGCTCG 62.107 66.667 7.62 0.00 43.17 5.03
3754 4654 4.218578 CCGCTCGCCTCTCTGCAT 62.219 66.667 0.00 0.00 0.00 3.96
3755 4655 2.657944 CGCTCGCCTCTCTGCATC 60.658 66.667 0.00 0.00 0.00 3.91
3756 4656 2.813901 GCTCGCCTCTCTGCATCT 59.186 61.111 0.00 0.00 0.00 2.90
3757 4657 1.592131 GCTCGCCTCTCTGCATCTG 60.592 63.158 0.00 0.00 0.00 2.90
3758 4658 2.014064 GCTCGCCTCTCTGCATCTGA 62.014 60.000 0.00 0.00 0.00 3.27
3759 4659 0.248990 CTCGCCTCTCTGCATCTGAC 60.249 60.000 0.00 0.00 0.00 3.51
3760 4660 0.682532 TCGCCTCTCTGCATCTGACT 60.683 55.000 0.00 0.00 0.00 3.41
3761 4661 0.175302 CGCCTCTCTGCATCTGACTT 59.825 55.000 0.00 0.00 0.00 3.01
3762 4662 1.802136 CGCCTCTCTGCATCTGACTTC 60.802 57.143 0.00 0.00 0.00 3.01
3763 4663 1.206610 GCCTCTCTGCATCTGACTTCA 59.793 52.381 0.00 0.00 0.00 3.02
3764 4664 2.739287 GCCTCTCTGCATCTGACTTCAG 60.739 54.545 0.00 0.00 45.08 3.02
3765 4665 2.542597 CTCTCTGCATCTGACTTCAGC 58.457 52.381 0.99 0.00 43.46 4.26
3766 4666 1.897802 TCTCTGCATCTGACTTCAGCA 59.102 47.619 0.99 0.00 43.46 4.41
3767 4667 2.001159 CTCTGCATCTGACTTCAGCAC 58.999 52.381 0.99 0.00 43.46 4.40
3768 4668 0.720027 CTGCATCTGACTTCAGCACG 59.280 55.000 0.99 0.00 43.46 5.34
3769 4669 0.671472 TGCATCTGACTTCAGCACGG 60.671 55.000 0.99 0.00 43.46 4.94
3770 4670 1.975363 GCATCTGACTTCAGCACGGC 61.975 60.000 0.99 0.00 43.46 5.68
3771 4671 1.078848 ATCTGACTTCAGCACGGCC 60.079 57.895 0.99 0.00 43.46 6.13
3772 4672 1.830587 ATCTGACTTCAGCACGGCCA 61.831 55.000 2.24 0.00 43.46 5.36
3773 4673 1.376424 CTGACTTCAGCACGGCCAT 60.376 57.895 2.24 0.00 37.15 4.40
3774 4674 0.957395 CTGACTTCAGCACGGCCATT 60.957 55.000 2.24 0.00 37.15 3.16
3775 4675 1.236616 TGACTTCAGCACGGCCATTG 61.237 55.000 2.24 0.00 0.00 2.82
3776 4676 1.926511 GACTTCAGCACGGCCATTGG 61.927 60.000 2.24 0.00 0.00 3.16
3794 4694 1.366366 GCATTGCCATCCAGGATGC 59.634 57.895 22.82 17.81 39.53 3.91
3795 4695 1.113517 GCATTGCCATCCAGGATGCT 61.114 55.000 22.82 5.24 41.86 3.79
3796 4696 0.959553 CATTGCCATCCAGGATGCTC 59.040 55.000 22.82 16.27 41.22 4.26
3797 4697 0.536687 ATTGCCATCCAGGATGCTCG 60.537 55.000 22.82 11.31 41.22 5.03
3798 4698 2.976903 GCCATCCAGGATGCTCGC 60.977 66.667 22.82 16.95 41.22 5.03
3799 4699 2.281345 CCATCCAGGATGCTCGCC 60.281 66.667 22.82 0.00 41.22 5.54
3800 4700 2.815945 CCATCCAGGATGCTCGCCT 61.816 63.158 22.82 0.00 41.22 5.52
3801 4701 1.475169 CCATCCAGGATGCTCGCCTA 61.475 60.000 22.82 0.00 41.22 3.93
3802 4702 0.037512 CATCCAGGATGCTCGCCTAG 60.038 60.000 16.91 0.00 33.17 3.02
3803 4703 0.178950 ATCCAGGATGCTCGCCTAGA 60.179 55.000 0.00 0.00 33.51 2.43
3804 4704 1.109920 TCCAGGATGCTCGCCTAGAC 61.110 60.000 0.00 0.00 33.51 2.59
3805 4705 1.007964 CAGGATGCTCGCCTAGACG 60.008 63.158 0.00 0.00 33.51 4.18
3806 4706 2.355244 GGATGCTCGCCTAGACGC 60.355 66.667 0.00 0.00 0.00 5.19
3807 4707 2.725008 GATGCTCGCCTAGACGCT 59.275 61.111 0.00 0.00 0.00 5.07
3808 4708 1.659954 GATGCTCGCCTAGACGCTG 60.660 63.158 0.00 0.00 0.00 5.18
3809 4709 3.781770 ATGCTCGCCTAGACGCTGC 62.782 63.158 8.70 8.70 34.49 5.25
3811 4711 4.914420 CTCGCCTAGACGCTGCCG 62.914 72.222 0.00 0.00 41.14 5.69
3813 4713 4.271816 CGCCTAGACGCTGCCGAT 62.272 66.667 0.00 0.00 38.29 4.18
3814 4714 2.659897 GCCTAGACGCTGCCGATG 60.660 66.667 0.00 0.00 38.29 3.84
3815 4715 2.028190 CCTAGACGCTGCCGATGG 59.972 66.667 0.00 0.00 38.29 3.51
3832 4732 4.486503 GCCCTCCTGCCTCTGCTG 62.487 72.222 0.00 0.00 38.71 4.41
3833 4733 2.686470 CCCTCCTGCCTCTGCTGA 60.686 66.667 0.00 0.00 38.61 4.26
3834 4734 2.296365 CCCTCCTGCCTCTGCTGAA 61.296 63.158 0.00 0.00 38.61 3.02
3835 4735 1.221293 CCTCCTGCCTCTGCTGAAG 59.779 63.158 0.00 0.00 38.61 3.02
3836 4736 1.263342 CCTCCTGCCTCTGCTGAAGA 61.263 60.000 0.00 0.00 38.61 2.87
3837 4737 0.108233 CTCCTGCCTCTGCTGAAGAC 60.108 60.000 0.00 0.00 38.61 3.01
3838 4738 1.078567 CCTGCCTCTGCTGAAGACC 60.079 63.158 0.00 0.00 38.61 3.85
3839 4739 1.551908 CCTGCCTCTGCTGAAGACCT 61.552 60.000 0.00 0.00 38.61 3.85
3840 4740 0.324285 CTGCCTCTGCTGAAGACCTT 59.676 55.000 0.00 0.00 38.61 3.50
3841 4741 0.035881 TGCCTCTGCTGAAGACCTTG 59.964 55.000 0.00 0.00 38.71 3.61
3842 4742 1.304509 GCCTCTGCTGAAGACCTTGC 61.305 60.000 0.00 0.00 33.53 4.01
3843 4743 0.676151 CCTCTGCTGAAGACCTTGCC 60.676 60.000 0.00 0.00 0.00 4.52
3844 4744 0.035881 CTCTGCTGAAGACCTTGCCA 59.964 55.000 0.00 0.00 0.00 4.92
3845 4745 0.250467 TCTGCTGAAGACCTTGCCAC 60.250 55.000 0.00 0.00 0.00 5.01
3846 4746 1.228245 TGCTGAAGACCTTGCCACC 60.228 57.895 0.00 0.00 0.00 4.61
3847 4747 1.228245 GCTGAAGACCTTGCCACCA 60.228 57.895 0.00 0.00 0.00 4.17
3848 4748 0.610232 GCTGAAGACCTTGCCACCAT 60.610 55.000 0.00 0.00 0.00 3.55
3849 4749 1.915141 CTGAAGACCTTGCCACCATT 58.085 50.000 0.00 0.00 0.00 3.16
3850 4750 1.542915 CTGAAGACCTTGCCACCATTG 59.457 52.381 0.00 0.00 0.00 2.82
3851 4751 0.244721 GAAGACCTTGCCACCATTGC 59.755 55.000 0.00 0.00 0.00 3.56
3852 4752 1.526575 AAGACCTTGCCACCATTGCG 61.527 55.000 0.00 0.00 0.00 4.85
3853 4753 3.631487 GACCTTGCCACCATTGCGC 62.631 63.158 0.00 0.00 0.00 6.09
3854 4754 3.376078 CCTTGCCACCATTGCGCT 61.376 61.111 9.73 0.00 0.00 5.92
3855 4755 2.652530 CTTGCCACCATTGCGCTT 59.347 55.556 9.73 0.00 0.00 4.68
3856 4756 1.444895 CTTGCCACCATTGCGCTTC 60.445 57.895 9.73 0.00 0.00 3.86
3857 4757 1.870055 CTTGCCACCATTGCGCTTCT 61.870 55.000 9.73 0.00 0.00 2.85
3858 4758 1.865788 TTGCCACCATTGCGCTTCTC 61.866 55.000 9.73 0.00 0.00 2.87
3859 4759 2.042831 GCCACCATTGCGCTTCTCT 61.043 57.895 9.73 0.00 0.00 3.10
3860 4760 1.798735 CCACCATTGCGCTTCTCTG 59.201 57.895 9.73 0.00 0.00 3.35
3861 4761 0.957395 CCACCATTGCGCTTCTCTGT 60.957 55.000 9.73 0.00 0.00 3.41
3862 4762 0.167470 CACCATTGCGCTTCTCTGTG 59.833 55.000 9.73 4.98 0.00 3.66
3863 4763 0.957395 ACCATTGCGCTTCTCTGTGG 60.957 55.000 9.73 8.64 0.00 4.17
3864 4764 1.136147 CATTGCGCTTCTCTGTGGC 59.864 57.895 9.73 0.00 0.00 5.01
3870 4770 2.357517 CTTCTCTGTGGCGCGGTT 60.358 61.111 8.83 0.00 0.00 4.44
3871 4771 2.664851 TTCTCTGTGGCGCGGTTG 60.665 61.111 8.83 1.80 0.00 3.77
3872 4772 3.158537 TTCTCTGTGGCGCGGTTGA 62.159 57.895 8.83 4.19 0.00 3.18
3873 4773 2.434884 CTCTGTGGCGCGGTTGAT 60.435 61.111 8.83 0.00 0.00 2.57
3874 4774 2.741985 TCTGTGGCGCGGTTGATG 60.742 61.111 8.83 0.00 0.00 3.07
3875 4775 3.803082 CTGTGGCGCGGTTGATGG 61.803 66.667 8.83 0.00 0.00 3.51
3881 4781 3.133464 CGCGGTTGATGGCCACAT 61.133 61.111 8.16 0.00 40.85 3.21
3882 4782 2.699768 CGCGGTTGATGGCCACATT 61.700 57.895 8.16 0.00 37.47 2.71
3883 4783 1.153784 GCGGTTGATGGCCACATTG 60.154 57.895 8.16 0.00 37.47 2.82
3884 4784 1.594194 GCGGTTGATGGCCACATTGA 61.594 55.000 8.16 0.00 37.47 2.57
3885 4785 1.105457 CGGTTGATGGCCACATTGAT 58.895 50.000 8.16 0.00 37.47 2.57
3886 4786 1.202325 CGGTTGATGGCCACATTGATG 60.202 52.381 8.16 0.00 37.47 3.07
3887 4787 1.472026 GGTTGATGGCCACATTGATGC 60.472 52.381 8.16 0.00 37.47 3.91
3888 4788 0.825410 TTGATGGCCACATTGATGCC 59.175 50.000 8.16 12.33 45.56 4.40
3892 4792 1.744014 GGCCACATTGATGCCATCC 59.256 57.895 13.76 0.00 44.70 3.51
3893 4793 0.757935 GGCCACATTGATGCCATCCT 60.758 55.000 13.76 0.00 44.70 3.24
3894 4794 1.117150 GCCACATTGATGCCATCCTT 58.883 50.000 1.49 0.00 0.00 3.36
3895 4795 1.202486 GCCACATTGATGCCATCCTTG 60.202 52.381 1.49 2.53 0.00 3.61
3896 4796 1.411246 CCACATTGATGCCATCCTTGG 59.589 52.381 1.49 0.00 46.66 3.61
3905 4805 1.153005 CCATCCTTGGCTCTGAGGC 60.153 63.158 22.95 22.95 41.77 4.70
3921 4821 2.267324 GCCTCTGCCTCTGGTGAC 59.733 66.667 0.00 0.00 0.00 3.67
3922 4822 2.575993 CCTCTGCCTCTGGTGACG 59.424 66.667 0.00 0.00 0.00 4.35
3923 4823 1.979155 CCTCTGCCTCTGGTGACGA 60.979 63.158 0.00 0.00 0.00 4.20
3924 4824 1.510383 CTCTGCCTCTGGTGACGAG 59.490 63.158 0.00 0.00 0.00 4.18
3925 4825 1.943116 CTCTGCCTCTGGTGACGAGG 61.943 65.000 2.57 2.57 46.87 4.63
3929 4829 4.823276 CTCTGGTGACGAGGATGC 57.177 61.111 0.00 0.00 0.00 3.91
3930 4830 1.226802 CTCTGGTGACGAGGATGCG 60.227 63.158 0.00 0.00 37.29 4.73
3931 4831 2.887568 CTGGTGACGAGGATGCGC 60.888 66.667 0.00 0.00 33.86 6.09
3932 4832 4.451150 TGGTGACGAGGATGCGCC 62.451 66.667 4.18 0.00 33.86 6.53
3933 4833 4.451150 GGTGACGAGGATGCGCCA 62.451 66.667 4.18 0.00 40.02 5.69
3934 4834 2.202932 GTGACGAGGATGCGCCAT 60.203 61.111 4.18 0.00 40.02 4.40
3935 4835 2.202919 TGACGAGGATGCGCCATG 60.203 61.111 4.18 0.00 40.02 3.66
3936 4836 2.106938 GACGAGGATGCGCCATGA 59.893 61.111 4.18 0.00 40.02 3.07
3937 4837 1.301244 GACGAGGATGCGCCATGAT 60.301 57.895 4.18 0.00 40.02 2.45
3938 4838 1.287730 GACGAGGATGCGCCATGATC 61.288 60.000 4.18 0.00 40.02 2.92
3939 4839 1.301165 CGAGGATGCGCCATGATCA 60.301 57.895 4.18 0.00 40.02 2.92
3940 4840 1.563435 CGAGGATGCGCCATGATCAC 61.563 60.000 4.18 0.00 40.02 3.06
3941 4841 1.228063 AGGATGCGCCATGATCACC 60.228 57.895 4.18 0.00 40.02 4.02
3942 4842 2.610694 GGATGCGCCATGATCACCG 61.611 63.158 4.18 2.49 36.34 4.94
3943 4843 3.245948 GATGCGCCATGATCACCGC 62.246 63.158 22.76 22.76 45.99 5.68
3947 4847 4.504596 GCCATGATCACCGCCCCA 62.505 66.667 0.00 0.00 0.00 4.96
3948 4848 2.203252 CCATGATCACCGCCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
3949 4849 2.903855 CATGATCACCGCCCCAGC 60.904 66.667 0.00 0.00 0.00 4.85
3950 4850 4.195334 ATGATCACCGCCCCAGCC 62.195 66.667 0.00 0.00 34.57 4.85
3952 4852 4.195334 GATCACCGCCCCAGCCAT 62.195 66.667 0.00 0.00 34.57 4.40
3953 4853 4.511246 ATCACCGCCCCAGCCATG 62.511 66.667 0.00 0.00 34.57 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.676744 CACAAACATCTACAAGTTGAACACG 59.323 40.000 10.54 0.00 0.00 4.49
144 147 5.048846 ACTTCCCATGTTTAGAACACACT 57.951 39.130 0.00 0.00 45.50 3.55
149 152 4.982295 GCAACAACTTCCCATGTTTAGAAC 59.018 41.667 0.00 0.00 37.66 3.01
150 153 4.038642 GGCAACAACTTCCCATGTTTAGAA 59.961 41.667 0.00 0.00 37.66 2.10
197 200 6.708285 ACCAACGAGTATTCTGTAGGAATTT 58.292 36.000 0.00 0.00 41.42 1.82
204 207 6.282167 TGTTTTGACCAACGAGTATTCTGTA 58.718 36.000 0.00 0.00 0.00 2.74
256 259 0.806868 TCGGGCAGTACGTGACTAAG 59.193 55.000 0.00 0.00 35.64 2.18
271 274 1.536284 GGAGCACGATAGAACTTCGGG 60.536 57.143 0.00 0.00 42.81 5.14
285 288 2.092375 AGCTATACCCAAAAGGGAGCAC 60.092 50.000 7.71 0.00 40.61 4.40
403 411 0.814010 ACAAGACCAAGTCCACACGC 60.814 55.000 0.00 0.00 32.18 5.34
409 417 1.692411 AGCCAAACAAGACCAAGTCC 58.308 50.000 0.00 0.00 32.18 3.85
416 425 2.550180 GAGACAGGAAGCCAAACAAGAC 59.450 50.000 0.00 0.00 0.00 3.01
451 460 2.674852 CAAGTGCATCACGCTGACTAAT 59.325 45.455 0.00 0.00 43.06 1.73
454 463 0.033920 TCAAGTGCATCACGCTGACT 59.966 50.000 0.00 0.00 43.06 3.41
485 494 2.893637 CATTTCGTCCCTCAACTCGAT 58.106 47.619 0.00 0.00 32.54 3.59
486 495 1.671850 GCATTTCGTCCCTCAACTCGA 60.672 52.381 0.00 0.00 0.00 4.04
597 609 7.285401 TCTGATTTTACTTTTGGTTCAGCTTCT 59.715 33.333 0.00 0.00 32.24 2.85
623 635 1.301165 GTAGACGCGGTTTGGTGGT 60.301 57.895 12.47 0.00 0.00 4.16
624 636 1.005394 AGTAGACGCGGTTTGGTGG 60.005 57.895 12.47 0.00 0.00 4.61
625 637 0.319211 TCAGTAGACGCGGTTTGGTG 60.319 55.000 12.47 0.14 0.00 4.17
750 779 2.833943 TGAATAGACTGCTTGCTCCTGA 59.166 45.455 0.00 0.00 0.00 3.86
752 781 3.710677 AGATGAATAGACTGCTTGCTCCT 59.289 43.478 0.00 0.00 0.00 3.69
791 820 2.040278 AGAGCACAGGGAGAGGGG 59.960 66.667 0.00 0.00 0.00 4.79
801 830 0.035881 CAAGCTGGGAAGAGAGCACA 59.964 55.000 0.00 0.00 37.70 4.57
805 834 1.140652 GGATCCAAGCTGGGAAGAGAG 59.859 57.143 15.61 0.00 41.12 3.20
826 857 4.719997 GGAACGCTCCTCGATGAG 57.280 61.111 12.84 12.84 41.67 2.90
866 910 4.380531 TCTCGAAACAATTGAGCAGTTCT 58.619 39.130 13.59 0.00 0.00 3.01
880 924 4.434330 CGCAAGGAAGTTGTATCTCGAAAC 60.434 45.833 0.00 0.00 38.55 2.78
885 929 4.745649 AGTACGCAAGGAAGTTGTATCTC 58.254 43.478 0.00 0.00 46.39 2.75
893 937 4.929808 CACTGATTAAGTACGCAAGGAAGT 59.070 41.667 0.00 0.00 38.60 3.01
1209 1256 3.624777 GATCCCCTGTTCAATGTCACAT 58.375 45.455 0.00 0.00 0.00 3.21
1251 1301 0.856641 TTTCCGCGAGTTTCTTCACG 59.143 50.000 8.23 0.00 0.00 4.35
1338 1388 5.697848 ACGCAACTAACTTGACGATATTC 57.302 39.130 0.00 0.00 35.03 1.75
1353 1403 0.388649 CTTCTCGGCAGTACGCAACT 60.389 55.000 10.92 0.00 45.17 3.16
1359 1409 1.508632 TTTGTGCTTCTCGGCAGTAC 58.491 50.000 0.00 0.00 43.25 2.73
1368 1418 3.622612 GCACCAATTTGTTTTGTGCTTCT 59.377 39.130 16.44 0.00 34.11 2.85
1412 1462 2.029200 ACAGTGTCAGTGATCTCTGCAG 60.029 50.000 18.01 7.63 35.63 4.41
1507 1573 4.260784 GGTGCATGAAAAATAGTAGCTCGG 60.261 45.833 0.00 0.00 0.00 4.63
1509 1575 6.127897 ACAAGGTGCATGAAAAATAGTAGCTC 60.128 38.462 0.00 0.00 0.00 4.09
1515 1581 6.222389 TCCAAACAAGGTGCATGAAAAATAG 58.778 36.000 0.00 0.00 0.00 1.73
1615 1728 8.267620 ACAGGATGATTCTTCTATCCATAACA 57.732 34.615 0.00 0.00 42.23 2.41
1812 1929 8.997621 TGTAGAAAATGTAGACCTTCACATAC 57.002 34.615 0.00 0.00 34.32 2.39
1824 1941 8.204836 ACTAGGCAAGGTATGTAGAAAATGTAG 58.795 37.037 0.00 0.00 0.00 2.74
2062 2179 8.158169 TCAGCATTATTAATTGGAGATGTGAC 57.842 34.615 0.00 0.00 0.00 3.67
2103 2220 3.378112 CCATGTACCCACTAACAGCATTG 59.622 47.826 0.00 0.00 0.00 2.82
2135 2252 3.616821 CGAGATTTCGCCATTGTACAGAA 59.383 43.478 0.00 0.00 40.36 3.02
2623 2771 2.955614 TGCTCAGCCTACGAAAACTAC 58.044 47.619 0.00 0.00 0.00 2.73
2678 2827 3.179902 AGTTGTACCTAGGCACCACTA 57.820 47.619 15.65 1.16 0.00 2.74
2929 3625 0.930310 CACATGTTAGCATCGGTCGG 59.070 55.000 0.00 0.00 31.99 4.79
3015 3721 9.480053 CCATTGATCTTGTTTTACTTGATGTTT 57.520 29.630 0.00 0.00 0.00 2.83
3041 3747 6.325919 TGGTTTCATCATCCACTTTTGTAC 57.674 37.500 0.00 0.00 0.00 2.90
3122 3829 4.822036 TGTTCCCACAATACACTTTTCG 57.178 40.909 0.00 0.00 0.00 3.46
3237 4132 8.974060 TTGATATTCCATTAGGGTCAACTAAC 57.026 34.615 0.00 0.00 35.90 2.34
3293 4188 9.906660 GTTCCTTGTGTCATTGTTTAATAATCA 57.093 29.630 0.00 0.00 0.00 2.57
3298 4193 9.965824 CTTTAGTTCCTTGTGTCATTGTTTAAT 57.034 29.630 0.00 0.00 0.00 1.40
3299 4194 8.962679 ACTTTAGTTCCTTGTGTCATTGTTTAA 58.037 29.630 0.00 0.00 0.00 1.52
3300 4195 8.514330 ACTTTAGTTCCTTGTGTCATTGTTTA 57.486 30.769 0.00 0.00 0.00 2.01
3301 4196 7.404671 ACTTTAGTTCCTTGTGTCATTGTTT 57.595 32.000 0.00 0.00 0.00 2.83
3302 4197 7.122055 TCAACTTTAGTTCCTTGTGTCATTGTT 59.878 33.333 0.00 0.00 35.83 2.83
3303 4198 6.601613 TCAACTTTAGTTCCTTGTGTCATTGT 59.398 34.615 0.00 0.00 35.83 2.71
3304 4199 6.912591 GTCAACTTTAGTTCCTTGTGTCATTG 59.087 38.462 0.00 0.00 35.83 2.82
3305 4200 6.039382 GGTCAACTTTAGTTCCTTGTGTCATT 59.961 38.462 0.00 0.00 35.83 2.57
3306 4201 5.531287 GGTCAACTTTAGTTCCTTGTGTCAT 59.469 40.000 0.00 0.00 35.83 3.06
3307 4202 4.879545 GGTCAACTTTAGTTCCTTGTGTCA 59.120 41.667 0.00 0.00 35.83 3.58
3308 4203 4.275196 GGGTCAACTTTAGTTCCTTGTGTC 59.725 45.833 0.00 0.00 35.83 3.67
3309 4204 4.079958 AGGGTCAACTTTAGTTCCTTGTGT 60.080 41.667 0.00 0.00 35.83 3.72
3310 4205 4.461198 AGGGTCAACTTTAGTTCCTTGTG 58.539 43.478 0.00 0.00 35.83 3.33
3311 4206 4.790718 AGGGTCAACTTTAGTTCCTTGT 57.209 40.909 0.00 0.00 35.83 3.16
3312 4207 6.940298 TCATTAGGGTCAACTTTAGTTCCTTG 59.060 38.462 6.66 2.22 35.83 3.61
3313 4208 7.086685 TCATTAGGGTCAACTTTAGTTCCTT 57.913 36.000 6.66 0.19 35.83 3.36
3314 4209 6.697641 TCATTAGGGTCAACTTTAGTTCCT 57.302 37.500 6.60 6.60 35.83 3.36
3315 4210 7.939784 AATCATTAGGGTCAACTTTAGTTCC 57.060 36.000 0.00 0.00 35.83 3.62
3316 4211 9.841880 GAAAATCATTAGGGTCAACTTTAGTTC 57.158 33.333 0.00 0.00 35.83 3.01
3317 4212 9.588096 AGAAAATCATTAGGGTCAACTTTAGTT 57.412 29.630 0.00 0.00 39.12 2.24
3318 4213 9.232473 GAGAAAATCATTAGGGTCAACTTTAGT 57.768 33.333 0.00 0.00 0.00 2.24
3319 4214 9.454859 AGAGAAAATCATTAGGGTCAACTTTAG 57.545 33.333 0.00 0.00 0.00 1.85
3320 4215 9.807921 AAGAGAAAATCATTAGGGTCAACTTTA 57.192 29.630 0.00 0.00 0.00 1.85
3321 4216 8.712228 AAGAGAAAATCATTAGGGTCAACTTT 57.288 30.769 0.00 0.00 0.00 2.66
3322 4217 8.166726 AGAAGAGAAAATCATTAGGGTCAACTT 58.833 33.333 0.00 0.00 0.00 2.66
3323 4218 7.694093 AGAAGAGAAAATCATTAGGGTCAACT 58.306 34.615 0.00 0.00 0.00 3.16
3324 4219 7.929941 AGAAGAGAAAATCATTAGGGTCAAC 57.070 36.000 0.00 0.00 0.00 3.18
3325 4220 8.047310 GGTAGAAGAGAAAATCATTAGGGTCAA 58.953 37.037 0.00 0.00 0.00 3.18
3326 4221 7.403231 AGGTAGAAGAGAAAATCATTAGGGTCA 59.597 37.037 0.00 0.00 0.00 4.02
3327 4222 7.797062 AGGTAGAAGAGAAAATCATTAGGGTC 58.203 38.462 0.00 0.00 0.00 4.46
3328 4223 7.757242 AGGTAGAAGAGAAAATCATTAGGGT 57.243 36.000 0.00 0.00 0.00 4.34
3329 4224 8.267894 TGAAGGTAGAAGAGAAAATCATTAGGG 58.732 37.037 0.00 0.00 0.00 3.53
3330 4225 9.844257 ATGAAGGTAGAAGAGAAAATCATTAGG 57.156 33.333 0.00 0.00 0.00 2.69
3332 4227 9.838339 GGATGAAGGTAGAAGAGAAAATCATTA 57.162 33.333 0.00 0.00 0.00 1.90
3333 4228 7.777440 GGGATGAAGGTAGAAGAGAAAATCATT 59.223 37.037 0.00 0.00 0.00 2.57
3334 4229 7.128573 AGGGATGAAGGTAGAAGAGAAAATCAT 59.871 37.037 0.00 0.00 0.00 2.45
3441 4336 9.709495 AACTTGTGTTGCATACATTGATTTAAT 57.291 25.926 5.29 0.00 39.39 1.40
3443 4338 9.619316 GTAACTTGTGTTGCATACATTGATTTA 57.381 29.630 5.29 0.00 39.39 1.40
3444 4339 7.598493 GGTAACTTGTGTTGCATACATTGATTT 59.402 33.333 5.29 0.00 39.93 2.17
3445 4340 7.090173 GGTAACTTGTGTTGCATACATTGATT 58.910 34.615 5.29 2.03 39.93 2.57
3446 4341 6.208402 TGGTAACTTGTGTTGCATACATTGAT 59.792 34.615 5.29 1.12 39.93 2.57
3447 4342 5.532779 TGGTAACTTGTGTTGCATACATTGA 59.467 36.000 5.29 0.00 39.93 2.57
3448 4343 5.767269 TGGTAACTTGTGTTGCATACATTG 58.233 37.500 5.29 4.93 39.93 2.82
3449 4344 6.389091 CATGGTAACTTGTGTTGCATACATT 58.611 36.000 5.29 1.67 39.93 2.71
3518 4413 2.093890 TCTGCGCATGACAATTTCCAT 58.906 42.857 12.24 0.00 0.00 3.41
3548 4448 8.574251 TTTAGTGCCTTTTATGTATCATGTGT 57.426 30.769 0.00 0.00 0.00 3.72
3554 4454 9.353999 CCAACTTTTTAGTGCCTTTTATGTATC 57.646 33.333 0.00 0.00 0.00 2.24
3580 4480 3.626028 ACTTCATTCAAACTTGTCGGC 57.374 42.857 0.00 0.00 0.00 5.54
3582 4482 7.017645 CCTATCAACTTCATTCAAACTTGTCG 58.982 38.462 0.00 0.00 0.00 4.35
3584 4484 6.265196 TGCCTATCAACTTCATTCAAACTTGT 59.735 34.615 0.00 0.00 0.00 3.16
3592 4492 5.392380 CCTTGTGTGCCTATCAACTTCATTC 60.392 44.000 0.00 0.00 0.00 2.67
3612 4512 2.892425 GATCGGCGGCACTCCTTG 60.892 66.667 10.53 0.00 0.00 3.61
3613 4513 3.376935 CTGATCGGCGGCACTCCTT 62.377 63.158 10.53 0.00 0.00 3.36
3614 4514 3.842923 CTGATCGGCGGCACTCCT 61.843 66.667 10.53 0.00 0.00 3.69
3626 4526 1.587613 GAGTGGTCGCGAGCTGATC 60.588 63.158 34.85 25.26 0.00 2.92
3627 4527 2.492090 GAGTGGTCGCGAGCTGAT 59.508 61.111 34.85 22.07 0.00 2.90
3628 4528 3.749064 GGAGTGGTCGCGAGCTGA 61.749 66.667 34.85 16.65 0.00 4.26
3629 4529 3.288308 AAGGAGTGGTCGCGAGCTG 62.288 63.158 34.85 0.00 0.00 4.24
3630 4530 2.992114 AAGGAGTGGTCGCGAGCT 60.992 61.111 34.85 21.42 0.00 4.09
3631 4531 2.493907 AAGAAGGAGTGGTCGCGAGC 62.494 60.000 30.17 30.17 0.00 5.03
3632 4532 0.456995 GAAGAAGGAGTGGTCGCGAG 60.457 60.000 10.24 0.00 0.00 5.03
3633 4533 1.176619 TGAAGAAGGAGTGGTCGCGA 61.177 55.000 3.71 3.71 0.00 5.87
3634 4534 0.319555 TTGAAGAAGGAGTGGTCGCG 60.320 55.000 0.00 0.00 0.00 5.87
3635 4535 1.433534 CTTGAAGAAGGAGTGGTCGC 58.566 55.000 0.00 0.00 0.00 5.19
3645 4545 2.031333 GCACAGCTTGTCCTTGAAGAAG 60.031 50.000 0.00 0.00 0.00 2.85
3646 4546 1.949525 GCACAGCTTGTCCTTGAAGAA 59.050 47.619 0.00 0.00 0.00 2.52
3647 4547 1.597742 GCACAGCTTGTCCTTGAAGA 58.402 50.000 0.00 0.00 0.00 2.87
3648 4548 0.595095 GGCACAGCTTGTCCTTGAAG 59.405 55.000 0.00 0.00 0.00 3.02
3649 4549 1.165907 CGGCACAGCTTGTCCTTGAA 61.166 55.000 0.00 0.00 0.00 2.69
3650 4550 1.597854 CGGCACAGCTTGTCCTTGA 60.598 57.895 0.00 0.00 0.00 3.02
3651 4551 0.602638 TACGGCACAGCTTGTCCTTG 60.603 55.000 0.00 0.00 0.00 3.61
3652 4552 0.320771 CTACGGCACAGCTTGTCCTT 60.321 55.000 0.00 0.00 0.00 3.36
3653 4553 1.293498 CTACGGCACAGCTTGTCCT 59.707 57.895 0.00 0.00 0.00 3.85
3654 4554 1.004918 ACTACGGCACAGCTTGTCC 60.005 57.895 0.00 0.00 0.00 4.02
3655 4555 1.901650 GCACTACGGCACAGCTTGTC 61.902 60.000 0.00 0.00 0.00 3.18
3656 4556 1.961277 GCACTACGGCACAGCTTGT 60.961 57.895 0.00 0.00 0.00 3.16
3657 4557 2.863153 GCACTACGGCACAGCTTG 59.137 61.111 0.00 0.00 0.00 4.01
3658 4558 2.738521 CGCACTACGGCACAGCTT 60.739 61.111 0.00 0.00 38.44 3.74
3686 4586 0.393132 GGAGTACTTGGCCTCCTTGC 60.393 60.000 3.32 0.00 43.29 4.01
3687 4587 0.253327 GGGAGTACTTGGCCTCCTTG 59.747 60.000 3.32 0.00 45.46 3.61
3688 4588 0.914902 GGGGAGTACTTGGCCTCCTT 60.915 60.000 3.32 0.00 45.46 3.36
3689 4589 1.307084 GGGGAGTACTTGGCCTCCT 60.307 63.158 3.32 0.00 45.46 3.69
3690 4590 2.376165 GGGGGAGTACTTGGCCTCC 61.376 68.421 3.32 2.31 45.44 4.30
3691 4591 0.988678 ATGGGGGAGTACTTGGCCTC 60.989 60.000 3.32 0.00 0.00 4.70
3692 4592 1.084842 ATGGGGGAGTACTTGGCCT 59.915 57.895 3.32 0.00 0.00 5.19
3693 4593 1.227383 CATGGGGGAGTACTTGGCC 59.773 63.158 0.00 0.00 0.00 5.36
3694 4594 1.453928 GCATGGGGGAGTACTTGGC 60.454 63.158 0.00 0.00 0.00 4.52
3695 4595 0.625849 AAGCATGGGGGAGTACTTGG 59.374 55.000 0.00 0.00 0.00 3.61
3696 4596 1.755179 CAAGCATGGGGGAGTACTTG 58.245 55.000 0.00 0.00 0.00 3.16
3697 4597 0.034089 GCAAGCATGGGGGAGTACTT 60.034 55.000 0.00 0.00 0.00 2.24
3698 4598 1.609783 GCAAGCATGGGGGAGTACT 59.390 57.895 0.00 0.00 0.00 2.73
3699 4599 1.453928 GGCAAGCATGGGGGAGTAC 60.454 63.158 0.00 0.00 0.00 2.73
3700 4600 1.505151 TTGGCAAGCATGGGGGAGTA 61.505 55.000 0.00 0.00 0.00 2.59
3701 4601 2.793317 CTTGGCAAGCATGGGGGAGT 62.793 60.000 15.25 0.00 0.00 3.85
3702 4602 2.037687 TTGGCAAGCATGGGGGAG 59.962 61.111 0.00 0.00 0.00 4.30
3703 4603 2.037687 CTTGGCAAGCATGGGGGA 59.962 61.111 15.25 0.00 0.00 4.81
3704 4604 3.078836 CCTTGGCAAGCATGGGGG 61.079 66.667 21.77 3.25 0.00 5.40
3705 4605 3.777910 GCCTTGGCAAGCATGGGG 61.778 66.667 21.77 9.10 0.00 4.96
3706 4606 3.777910 GGCCTTGGCAAGCATGGG 61.778 66.667 21.77 9.85 0.00 4.00
3707 4607 4.137872 CGGCCTTGGCAAGCATGG 62.138 66.667 21.77 10.24 0.00 3.66
3708 4608 3.346631 GACGGCCTTGGCAAGCATG 62.347 63.158 21.77 14.27 0.00 4.06
3709 4609 3.064324 GACGGCCTTGGCAAGCAT 61.064 61.111 21.77 9.08 0.00 3.79
3710 4610 4.577677 TGACGGCCTTGGCAAGCA 62.578 61.111 21.77 10.80 0.00 3.91
3711 4611 2.753931 CTTTGACGGCCTTGGCAAGC 62.754 60.000 21.77 16.01 0.00 4.01
3712 4612 1.286880 CTTTGACGGCCTTGGCAAG 59.713 57.895 20.31 20.31 0.00 4.01
3713 4613 2.855514 GCTTTGACGGCCTTGGCAA 61.856 57.895 14.04 0.00 0.00 4.52
3714 4614 3.294493 GCTTTGACGGCCTTGGCA 61.294 61.111 14.04 0.00 0.00 4.92
3715 4615 4.056125 GGCTTTGACGGCCTTGGC 62.056 66.667 0.00 2.49 45.57 4.52
3721 4621 4.056125 GGCCTTGGCTTTGACGGC 62.056 66.667 11.71 0.00 39.98 5.68
3722 4622 3.737172 CGGCCTTGGCTTTGACGG 61.737 66.667 11.71 0.00 0.00 4.79
3723 4623 4.404654 GCGGCCTTGGCTTTGACG 62.405 66.667 11.71 7.19 0.00 4.35
3724 4624 2.982744 GAGCGGCCTTGGCTTTGAC 61.983 63.158 11.71 0.00 41.72 3.18
3725 4625 2.672996 GAGCGGCCTTGGCTTTGA 60.673 61.111 11.71 0.00 41.72 2.69
3726 4626 4.107051 CGAGCGGCCTTGGCTTTG 62.107 66.667 11.71 3.49 41.72 2.77
3737 4637 4.218578 ATGCAGAGAGGCGAGCGG 62.219 66.667 0.00 0.00 36.28 5.52
3738 4638 2.657944 GATGCAGAGAGGCGAGCG 60.658 66.667 0.00 0.00 36.28 5.03
3739 4639 1.592131 CAGATGCAGAGAGGCGAGC 60.592 63.158 0.00 0.00 36.28 5.03
3740 4640 0.248990 GTCAGATGCAGAGAGGCGAG 60.249 60.000 0.00 0.00 36.28 5.03
3741 4641 0.682532 AGTCAGATGCAGAGAGGCGA 60.683 55.000 0.00 0.00 36.28 5.54
3742 4642 0.175302 AAGTCAGATGCAGAGAGGCG 59.825 55.000 0.00 0.00 36.28 5.52
3743 4643 1.206610 TGAAGTCAGATGCAGAGAGGC 59.793 52.381 0.00 0.00 0.00 4.70
3744 4644 2.739287 GCTGAAGTCAGATGCAGAGAGG 60.739 54.545 12.54 0.00 46.59 3.69
3745 4645 2.094130 TGCTGAAGTCAGATGCAGAGAG 60.094 50.000 12.54 0.00 46.59 3.20
3746 4646 1.897802 TGCTGAAGTCAGATGCAGAGA 59.102 47.619 12.54 0.00 46.59 3.10
3747 4647 2.001159 GTGCTGAAGTCAGATGCAGAG 58.999 52.381 12.54 0.00 46.59 3.35
3748 4648 1.670967 CGTGCTGAAGTCAGATGCAGA 60.671 52.381 12.54 0.00 46.59 4.26
3749 4649 0.720027 CGTGCTGAAGTCAGATGCAG 59.280 55.000 12.54 0.00 46.59 4.41
3750 4650 0.671472 CCGTGCTGAAGTCAGATGCA 60.671 55.000 12.54 1.16 46.59 3.96
3751 4651 1.975363 GCCGTGCTGAAGTCAGATGC 61.975 60.000 12.54 4.62 46.59 3.91
3752 4652 1.364626 GGCCGTGCTGAAGTCAGATG 61.365 60.000 12.54 3.42 46.59 2.90
3753 4653 1.078848 GGCCGTGCTGAAGTCAGAT 60.079 57.895 12.54 0.00 46.59 2.90
3754 4654 1.830587 ATGGCCGTGCTGAAGTCAGA 61.831 55.000 12.54 0.00 46.59 3.27
3755 4655 0.957395 AATGGCCGTGCTGAAGTCAG 60.957 55.000 0.00 3.84 46.40 3.51
3756 4656 1.073025 AATGGCCGTGCTGAAGTCA 59.927 52.632 0.00 0.00 0.00 3.41
3757 4657 1.503542 CAATGGCCGTGCTGAAGTC 59.496 57.895 0.00 0.00 0.00 3.01
3758 4658 1.973281 CCAATGGCCGTGCTGAAGT 60.973 57.895 0.00 0.00 0.00 3.01
3759 4659 2.879907 CCAATGGCCGTGCTGAAG 59.120 61.111 0.00 0.00 0.00 3.02
3760 4660 3.372730 GCCAATGGCCGTGCTGAA 61.373 61.111 14.47 0.00 44.06 3.02
3776 4676 1.113517 AGCATCCTGGATGGCAATGC 61.114 55.000 31.93 21.07 42.88 3.56
3777 4677 0.959553 GAGCATCCTGGATGGCAATG 59.040 55.000 31.93 12.80 40.10 2.82
3778 4678 0.536687 CGAGCATCCTGGATGGCAAT 60.537 55.000 31.93 13.51 40.10 3.56
3779 4679 1.153107 CGAGCATCCTGGATGGCAA 60.153 57.895 31.93 0.00 40.10 4.52
3780 4680 2.507452 CGAGCATCCTGGATGGCA 59.493 61.111 31.93 0.00 40.10 4.92
3781 4681 2.976903 GCGAGCATCCTGGATGGC 60.977 66.667 31.93 24.17 40.10 4.40
3782 4682 1.475169 TAGGCGAGCATCCTGGATGG 61.475 60.000 31.93 19.47 40.10 3.51
3783 4683 0.037512 CTAGGCGAGCATCCTGGATG 60.038 60.000 28.45 28.45 42.37 3.51
3784 4684 0.178950 TCTAGGCGAGCATCCTGGAT 60.179 55.000 2.57 2.57 36.46 3.41
3785 4685 1.109920 GTCTAGGCGAGCATCCTGGA 61.110 60.000 0.00 0.00 38.64 3.86
3786 4686 1.365633 GTCTAGGCGAGCATCCTGG 59.634 63.158 0.00 0.00 35.21 4.45
3787 4687 1.007964 CGTCTAGGCGAGCATCCTG 60.008 63.158 12.37 0.00 35.21 3.86
3788 4688 2.851071 GCGTCTAGGCGAGCATCCT 61.851 63.158 23.19 0.00 37.72 3.24
3789 4689 2.355244 GCGTCTAGGCGAGCATCC 60.355 66.667 23.19 0.00 0.00 3.51
3790 4690 1.659954 CAGCGTCTAGGCGAGCATC 60.660 63.158 23.19 1.43 38.18 3.91
3791 4691 2.415010 CAGCGTCTAGGCGAGCAT 59.585 61.111 23.19 0.00 38.18 3.79
3792 4692 4.498520 GCAGCGTCTAGGCGAGCA 62.499 66.667 23.19 0.00 38.26 4.26
3797 4697 2.659897 CATCGGCAGCGTCTAGGC 60.660 66.667 0.00 0.00 0.00 3.93
3798 4698 2.028190 CCATCGGCAGCGTCTAGG 59.972 66.667 0.00 0.00 0.00 3.02
3815 4715 4.486503 CAGCAGAGGCAGGAGGGC 62.487 72.222 0.00 0.00 44.61 5.19
3816 4716 2.254737 CTTCAGCAGAGGCAGGAGGG 62.255 65.000 0.00 0.00 44.61 4.30
3817 4717 1.221293 CTTCAGCAGAGGCAGGAGG 59.779 63.158 0.00 0.00 44.61 4.30
3818 4718 0.108233 GTCTTCAGCAGAGGCAGGAG 60.108 60.000 0.00 0.00 44.61 3.69
3819 4719 1.548357 GGTCTTCAGCAGAGGCAGGA 61.548 60.000 0.00 0.00 44.61 3.86
3820 4720 1.078567 GGTCTTCAGCAGAGGCAGG 60.079 63.158 0.00 0.00 44.61 4.85
3821 4721 0.324285 AAGGTCTTCAGCAGAGGCAG 59.676 55.000 0.00 0.00 44.61 4.85
3822 4722 0.035881 CAAGGTCTTCAGCAGAGGCA 59.964 55.000 0.00 0.00 44.61 4.75
3823 4723 1.304509 GCAAGGTCTTCAGCAGAGGC 61.305 60.000 0.00 0.00 41.61 4.70
3824 4724 0.676151 GGCAAGGTCTTCAGCAGAGG 60.676 60.000 0.00 0.00 29.34 3.69
3825 4725 0.035881 TGGCAAGGTCTTCAGCAGAG 59.964 55.000 0.00 0.00 29.34 3.35
3826 4726 0.250467 GTGGCAAGGTCTTCAGCAGA 60.250 55.000 0.00 0.00 0.00 4.26
3827 4727 1.239968 GGTGGCAAGGTCTTCAGCAG 61.240 60.000 0.00 0.00 0.00 4.24
3828 4728 1.228245 GGTGGCAAGGTCTTCAGCA 60.228 57.895 0.00 0.00 0.00 4.41
3829 4729 0.610232 ATGGTGGCAAGGTCTTCAGC 60.610 55.000 0.00 0.00 0.00 4.26
3830 4730 1.542915 CAATGGTGGCAAGGTCTTCAG 59.457 52.381 0.00 0.00 0.00 3.02
3831 4731 1.619654 CAATGGTGGCAAGGTCTTCA 58.380 50.000 0.00 0.00 0.00 3.02
3832 4732 0.244721 GCAATGGTGGCAAGGTCTTC 59.755 55.000 0.00 0.00 0.00 2.87
3833 4733 1.526575 CGCAATGGTGGCAAGGTCTT 61.527 55.000 0.00 0.00 0.00 3.01
3834 4734 1.973281 CGCAATGGTGGCAAGGTCT 60.973 57.895 0.00 0.00 0.00 3.85
3835 4735 2.568090 CGCAATGGTGGCAAGGTC 59.432 61.111 0.00 0.00 0.00 3.85
3836 4736 3.683937 GCGCAATGGTGGCAAGGT 61.684 61.111 0.30 0.00 0.00 3.50
3837 4737 2.824071 GAAGCGCAATGGTGGCAAGG 62.824 60.000 11.47 0.00 0.00 3.61
3838 4738 1.444895 GAAGCGCAATGGTGGCAAG 60.445 57.895 11.47 0.00 0.00 4.01
3839 4739 1.865788 GAGAAGCGCAATGGTGGCAA 61.866 55.000 11.47 0.00 0.00 4.52
3840 4740 2.282391 AGAAGCGCAATGGTGGCA 60.282 55.556 11.47 0.00 0.00 4.92
3841 4741 2.042831 AGAGAAGCGCAATGGTGGC 61.043 57.895 11.47 0.00 0.00 5.01
3842 4742 0.957395 ACAGAGAAGCGCAATGGTGG 60.957 55.000 11.47 0.00 0.00 4.61
3843 4743 0.167470 CACAGAGAAGCGCAATGGTG 59.833 55.000 11.47 6.36 0.00 4.17
3844 4744 0.957395 CCACAGAGAAGCGCAATGGT 60.957 55.000 11.47 0.00 0.00 3.55
3845 4745 1.798735 CCACAGAGAAGCGCAATGG 59.201 57.895 11.47 1.97 0.00 3.16
3846 4746 1.136147 GCCACAGAGAAGCGCAATG 59.864 57.895 11.47 2.75 0.00 2.82
3847 4747 2.393768 CGCCACAGAGAAGCGCAAT 61.394 57.895 11.47 0.00 43.72 3.56
3848 4748 3.043713 CGCCACAGAGAAGCGCAA 61.044 61.111 11.47 0.00 43.72 4.85
3853 4753 2.357517 AACCGCGCCACAGAGAAG 60.358 61.111 0.00 0.00 0.00 2.85
3854 4754 2.449031 ATCAACCGCGCCACAGAGAA 62.449 55.000 0.00 0.00 0.00 2.87
3855 4755 2.942796 ATCAACCGCGCCACAGAGA 61.943 57.895 0.00 0.00 0.00 3.10
3856 4756 2.434884 ATCAACCGCGCCACAGAG 60.435 61.111 0.00 0.00 0.00 3.35
3857 4757 2.741985 CATCAACCGCGCCACAGA 60.742 61.111 0.00 0.00 0.00 3.41
3858 4758 3.803082 CCATCAACCGCGCCACAG 61.803 66.667 0.00 0.00 0.00 3.66
3864 4764 2.699768 AATGTGGCCATCAACCGCG 61.700 57.895 9.72 0.00 40.72 6.46
3865 4765 1.153784 CAATGTGGCCATCAACCGC 60.154 57.895 9.72 0.00 38.22 5.68
3866 4766 1.105457 ATCAATGTGGCCATCAACCG 58.895 50.000 9.72 2.53 0.00 4.44
3867 4767 1.472026 GCATCAATGTGGCCATCAACC 60.472 52.381 9.72 0.00 0.00 3.77
3868 4768 1.472026 GGCATCAATGTGGCCATCAAC 60.472 52.381 9.72 0.00 46.92 3.18
3869 4769 0.825410 GGCATCAATGTGGCCATCAA 59.175 50.000 9.72 0.00 46.92 2.57
3870 4770 2.507213 GGCATCAATGTGGCCATCA 58.493 52.632 9.72 9.85 46.92 3.07
3875 4775 1.117150 AAGGATGGCATCAATGTGGC 58.883 50.000 27.39 9.41 44.24 5.01
3876 4776 1.411246 CCAAGGATGGCATCAATGTGG 59.589 52.381 27.39 21.86 40.58 4.17
3877 4777 2.882927 CCAAGGATGGCATCAATGTG 57.117 50.000 27.39 17.74 40.58 3.21
3888 4788 4.555610 GCCTCAGAGCCAAGGATG 57.444 61.111 0.00 0.00 34.35 3.51
3904 4804 2.267324 GTCACCAGAGGCAGAGGC 59.733 66.667 0.00 0.00 40.13 4.70
3905 4805 1.943116 CTCGTCACCAGAGGCAGAGG 61.943 65.000 0.00 0.00 32.38 3.69
3906 4806 1.510383 CTCGTCACCAGAGGCAGAG 59.490 63.158 0.00 0.00 32.38 3.35
3907 4807 3.686760 CTCGTCACCAGAGGCAGA 58.313 61.111 0.00 0.00 32.38 4.26
3912 4812 1.226802 CGCATCCTCGTCACCAGAG 60.227 63.158 0.00 0.00 35.60 3.35
3913 4813 2.885113 CGCATCCTCGTCACCAGA 59.115 61.111 0.00 0.00 0.00 3.86
3914 4814 2.887568 GCGCATCCTCGTCACCAG 60.888 66.667 0.30 0.00 0.00 4.00
3915 4815 4.451150 GGCGCATCCTCGTCACCA 62.451 66.667 10.83 0.00 33.72 4.17
3916 4816 4.451150 TGGCGCATCCTCGTCACC 62.451 66.667 10.83 0.00 39.32 4.02
3919 4819 1.287730 GATCATGGCGCATCCTCGTC 61.288 60.000 10.83 0.00 35.26 4.20
3920 4820 1.301244 GATCATGGCGCATCCTCGT 60.301 57.895 10.83 0.00 35.26 4.18
3921 4821 1.301165 TGATCATGGCGCATCCTCG 60.301 57.895 10.83 0.00 35.26 4.63
3922 4822 1.233285 GGTGATCATGGCGCATCCTC 61.233 60.000 10.83 0.00 35.26 3.71
3923 4823 1.228063 GGTGATCATGGCGCATCCT 60.228 57.895 10.83 0.00 35.26 3.24
3924 4824 2.610694 CGGTGATCATGGCGCATCC 61.611 63.158 10.83 0.00 0.00 3.51
3925 4825 2.941333 CGGTGATCATGGCGCATC 59.059 61.111 10.83 3.80 0.00 3.91
3926 4826 3.282157 GCGGTGATCATGGCGCAT 61.282 61.111 10.83 0.00 0.00 4.73
3930 4830 4.504596 TGGGGCGGTGATCATGGC 62.505 66.667 13.88 13.88 0.00 4.40
3931 4831 2.203252 CTGGGGCGGTGATCATGG 60.203 66.667 0.00 0.00 0.00 3.66
3932 4832 2.903855 GCTGGGGCGGTGATCATG 60.904 66.667 0.00 0.00 0.00 3.07
3933 4833 4.195334 GGCTGGGGCGGTGATCAT 62.195 66.667 0.00 0.00 39.81 2.45
3935 4835 4.195334 ATGGCTGGGGCGGTGATC 62.195 66.667 0.00 0.00 39.81 2.92
3936 4836 4.511246 CATGGCTGGGGCGGTGAT 62.511 66.667 0.00 0.00 39.81 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.