Multiple sequence alignment - TraesCS2D01G203000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G203000 chr2D 100.000 3748 0 0 1674 5421 155415130 155411383 0.000000e+00 6922.0
1 TraesCS2D01G203000 chr2D 100.000 1456 0 0 1 1456 155416803 155415348 0.000000e+00 2689.0
2 TraesCS2D01G203000 chr2B 93.280 3140 114 46 1675 4764 212311705 212308613 0.000000e+00 4540.0
3 TraesCS2D01G203000 chr2B 88.905 1352 60 34 151 1456 212313227 212311920 0.000000e+00 1583.0
4 TraesCS2D01G203000 chr2B 94.928 138 6 1 5284 5421 212308317 212308181 1.180000e-51 215.0
5 TraesCS2D01G203000 chr2B 93.396 106 7 0 4822 4927 212308492 212308387 2.020000e-34 158.0
6 TraesCS2D01G203000 chr2A 91.623 3020 109 62 1804 4761 144946759 144949696 0.000000e+00 4043.0
7 TraesCS2D01G203000 chr2A 88.983 1062 40 24 437 1456 144945426 144946452 0.000000e+00 1242.0
8 TraesCS2D01G203000 chr2A 91.534 189 10 3 4761 4943 144949725 144949913 6.970000e-64 255.0
9 TraesCS2D01G203000 chr2A 90.270 185 14 3 5239 5421 144949929 144950111 7.020000e-59 239.0
10 TraesCS2D01G203000 chr2A 80.569 211 25 7 189 386 144944991 144945198 1.220000e-31 148.0
11 TraesCS2D01G203000 chr2A 98.077 52 1 0 1680 1731 144946681 144946732 2.080000e-14 91.6
12 TraesCS2D01G203000 chr2A 90.385 52 2 1 1761 1809 144946728 144946779 1.260000e-06 65.8
13 TraesCS2D01G203000 chr5D 87.927 381 45 1 4038 4418 509569843 509570222 1.070000e-121 448.0
14 TraesCS2D01G203000 chr5D 88.760 258 25 3 4981 5237 261307719 261307465 4.080000e-81 313.0
15 TraesCS2D01G203000 chr5A 87.863 379 45 1 4040 4418 637058774 637059151 1.390000e-120 444.0
16 TraesCS2D01G203000 chr5A 91.440 257 22 0 4981 5237 260263723 260263467 2.400000e-93 353.0
17 TraesCS2D01G203000 chr5B 87.798 377 45 1 4042 4418 640403584 640403959 1.790000e-119 440.0
18 TraesCS2D01G203000 chr7D 92.996 257 18 0 4981 5237 421221493 421221237 5.130000e-100 375.0
19 TraesCS2D01G203000 chr7A 91.339 254 22 0 4984 5237 342532994 342532741 1.120000e-91 348.0
20 TraesCS2D01G203000 chr3D 91.051 257 23 0 4981 5237 400122632 400122888 1.120000e-91 348.0
21 TraesCS2D01G203000 chr3D 91.051 257 18 5 4981 5237 392898824 392899075 5.200000e-90 342.0
22 TraesCS2D01G203000 chr4D 90.272 257 25 0 4981 5237 105139091 105138835 2.420000e-88 337.0
23 TraesCS2D01G203000 chr6D 89.575 259 27 0 4981 5239 196103114 196102856 4.050000e-86 329.0
24 TraesCS2D01G203000 chr3A 88.973 263 29 0 4975 5237 396339778 396340040 5.240000e-85 326.0
25 TraesCS2D01G203000 chr4A 70.573 384 98 10 4039 4419 613704165 613704536 9.740000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G203000 chr2D 155411383 155416803 5420 True 4805.5 6922 100.000000 1 5421 2 chr2D.!!$R1 5420
1 TraesCS2D01G203000 chr2B 212308181 212313227 5046 True 1624.0 4540 92.627250 151 5421 4 chr2B.!!$R1 5270
2 TraesCS2D01G203000 chr2A 144944991 144950111 5120 False 869.2 4043 90.205857 189 5421 7 chr2A.!!$F1 5232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 981 0.467384 TCCCGTCCTACTCTACTCGG 59.533 60.000 0.00 0.0 38.05 4.63 F
891 1114 0.762461 CCATCTCTCTCCTCCACCCC 60.762 65.000 0.00 0.0 0.00 4.95 F
2002 2279 0.902048 CTCTCTCTCCAGCACCACCA 60.902 60.000 0.00 0.0 0.00 4.17 F
2491 2796 1.138036 CATCAATGTGTGGCAGCCG 59.862 57.895 7.03 0.0 0.00 5.52 F
3714 4050 0.917533 ATGTCTCTTCTGCCAGCCAT 59.082 50.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2491 2796 1.509923 GTTGCCCTGCTGAATGCTC 59.490 57.895 0.00 0.00 43.37 4.26 R
2884 3201 0.038618 TACCACGTGCTGCTAGTGTG 60.039 55.000 10.91 13.92 34.34 3.82 R
3668 4001 0.108329 AATTTCGATCGCAGGGACGT 60.108 50.000 11.09 0.00 0.00 4.34 R
4108 4461 1.135333 GCCAGGTACGAGAAGAGGAAG 59.865 57.143 0.00 0.00 0.00 3.46 R
5071 5528 0.044092 TAAGAGTGGGAGATGGGCCA 59.956 55.000 9.61 9.61 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.104965 TCCCTAAAACATAGTTTTGATGATACG 57.895 33.333 15.83 0.00 0.00 3.06
28 29 8.889717 CCCTAAAACATAGTTTTGATGATACGT 58.110 33.333 15.83 0.00 0.00 3.57
82 83 9.362151 TGTATTAATCTATTTTGGATCCAACCC 57.638 33.333 27.04 0.00 35.46 4.11
83 84 9.362151 GTATTAATCTATTTTGGATCCAACCCA 57.638 33.333 27.04 14.07 35.46 4.51
84 85 7.654022 TTAATCTATTTTGGATCCAACCCAC 57.346 36.000 27.04 0.00 35.46 4.61
85 86 3.616219 TCTATTTTGGATCCAACCCACG 58.384 45.455 27.04 13.88 35.46 4.94
86 87 2.302587 ATTTTGGATCCAACCCACGT 57.697 45.000 27.04 6.65 35.46 4.49
87 88 2.074729 TTTTGGATCCAACCCACGTT 57.925 45.000 27.04 0.00 35.46 3.99
96 97 1.799544 CAACCCACGTTGGTAGTACC 58.200 55.000 12.36 12.80 44.78 3.34
120 121 8.811994 ACCATACAAATTATAGTTTTGCTTGGT 58.188 29.630 19.25 19.25 42.16 3.67
125 126 7.806014 ACAAATTATAGTTTTGCTTGGTACACG 59.194 33.333 9.11 0.00 36.31 4.49
136 137 4.663636 CTTGGTACACGCTCCTTAAAAG 57.336 45.455 0.00 0.00 39.29 2.27
137 138 3.756933 TGGTACACGCTCCTTAAAAGT 57.243 42.857 0.00 0.00 0.00 2.66
138 139 4.075963 TGGTACACGCTCCTTAAAAGTT 57.924 40.909 0.00 0.00 0.00 2.66
139 140 4.453751 TGGTACACGCTCCTTAAAAGTTT 58.546 39.130 0.00 0.00 0.00 2.66
140 141 4.273969 TGGTACACGCTCCTTAAAAGTTTG 59.726 41.667 0.00 0.00 0.00 2.93
141 142 4.512571 GGTACACGCTCCTTAAAAGTTTGA 59.487 41.667 0.00 0.00 0.00 2.69
142 143 5.007921 GGTACACGCTCCTTAAAAGTTTGAA 59.992 40.000 0.00 0.00 0.00 2.69
143 144 4.916870 ACACGCTCCTTAAAAGTTTGAAC 58.083 39.130 0.00 0.00 0.00 3.18
144 145 3.966218 CACGCTCCTTAAAAGTTTGAACG 59.034 43.478 0.00 0.00 0.00 3.95
145 146 3.002965 ACGCTCCTTAAAAGTTTGAACGG 59.997 43.478 0.00 0.00 0.00 4.44
146 147 3.249080 CGCTCCTTAAAAGTTTGAACGGA 59.751 43.478 0.00 0.00 0.00 4.69
147 148 4.083484 CGCTCCTTAAAAGTTTGAACGGAT 60.083 41.667 5.03 0.00 0.00 4.18
148 149 5.391449 GCTCCTTAAAAGTTTGAACGGATC 58.609 41.667 5.03 0.00 0.00 3.36
149 150 5.181433 GCTCCTTAAAAGTTTGAACGGATCT 59.819 40.000 0.00 0.00 0.00 2.75
206 207 8.937634 AACCTGCAGATCAAATGATTTTTATC 57.062 30.769 17.39 0.00 34.37 1.75
207 208 7.495055 ACCTGCAGATCAAATGATTTTTATCC 58.505 34.615 17.39 0.00 34.37 2.59
217 218 9.265901 TCAAATGATTTTTATCCTTTTTCGCAA 57.734 25.926 0.00 0.00 0.00 4.85
273 284 9.939802 TCTTGATACAAAGATCATATCATCCTG 57.060 33.333 0.00 0.00 35.73 3.86
274 285 9.163899 CTTGATACAAAGATCATATCATCCTGG 57.836 37.037 0.00 0.00 35.73 4.45
275 286 7.627311 TGATACAAAGATCATATCATCCTGGG 58.373 38.462 0.00 0.00 31.83 4.45
276 287 7.458806 TGATACAAAGATCATATCATCCTGGGA 59.541 37.037 0.00 0.00 31.83 4.37
277 288 6.715350 ACAAAGATCATATCATCCTGGGAT 57.285 37.500 0.00 0.00 34.81 3.85
278 289 7.100068 ACAAAGATCATATCATCCTGGGATT 57.900 36.000 0.00 0.00 31.62 3.01
279 290 7.533083 ACAAAGATCATATCATCCTGGGATTT 58.467 34.615 0.00 0.00 31.62 2.17
284 295 6.520021 TCATATCATCCTGGGATTTTGACT 57.480 37.500 0.00 0.00 31.62 3.41
285 296 6.301486 TCATATCATCCTGGGATTTTGACTG 58.699 40.000 0.00 0.00 31.62 3.51
295 308 3.694566 GGGATTTTGACTGCGGATACTTT 59.305 43.478 0.00 0.00 0.00 2.66
329 342 2.173964 GTAACGTGCATTGAAATCGGC 58.826 47.619 0.00 0.00 0.00 5.54
455 648 0.638746 GTACATGGAAACTCGTCGCG 59.361 55.000 0.00 0.00 0.00 5.87
564 763 2.591311 CGCGTGTACACACCACACC 61.591 63.158 24.98 3.88 42.68 4.16
565 764 2.591311 GCGTGTACACACCACACCG 61.591 63.158 24.98 10.05 42.68 4.94
568 767 1.227409 TGTACACACCACACCGCAG 60.227 57.895 0.00 0.00 0.00 5.18
569 768 2.280524 TACACACCACACCGCAGC 60.281 61.111 0.00 0.00 0.00 5.25
570 769 3.095347 TACACACCACACCGCAGCA 62.095 57.895 0.00 0.00 0.00 4.41
715 924 1.954362 GACGCCATGTCTGCTCCTCT 61.954 60.000 0.00 0.00 44.58 3.69
716 925 1.227205 CGCCATGTCTGCTCCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
724 933 1.006813 TCTGCTCCTCTCCTCCTTCT 58.993 55.000 0.00 0.00 0.00 2.85
725 934 1.113788 CTGCTCCTCTCCTCCTTCTG 58.886 60.000 0.00 0.00 0.00 3.02
738 951 1.922447 TCCTTCTGCCTCTCTCTCTCT 59.078 52.381 0.00 0.00 0.00 3.10
768 981 0.467384 TCCCGTCCTACTCTACTCGG 59.533 60.000 0.00 0.00 38.05 4.63
809 1032 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
810 1033 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
887 1110 2.130426 GCGCCATCTCTCTCCTCCA 61.130 63.158 0.00 0.00 0.00 3.86
888 1111 1.739049 CGCCATCTCTCTCCTCCAC 59.261 63.158 0.00 0.00 0.00 4.02
890 1113 1.406860 GCCATCTCTCTCCTCCACCC 61.407 65.000 0.00 0.00 0.00 4.61
891 1114 0.762461 CCATCTCTCTCCTCCACCCC 60.762 65.000 0.00 0.00 0.00 4.95
892 1115 0.762461 CATCTCTCTCCTCCACCCCC 60.762 65.000 0.00 0.00 0.00 5.40
893 1116 2.305314 ATCTCTCTCCTCCACCCCCG 62.305 65.000 0.00 0.00 0.00 5.73
894 1117 3.273654 TCTCTCCTCCACCCCCGT 61.274 66.667 0.00 0.00 0.00 5.28
895 1118 3.077556 CTCTCCTCCACCCCCGTG 61.078 72.222 0.00 0.00 39.91 4.94
896 1119 3.907027 CTCTCCTCCACCCCCGTGT 62.907 68.421 0.00 0.00 38.41 4.49
897 1120 3.391382 CTCCTCCACCCCCGTGTC 61.391 72.222 0.00 0.00 38.41 3.67
900 1123 3.391382 CTCCACCCCCGTGTCCTC 61.391 72.222 0.00 0.00 38.41 3.71
903 1126 3.706373 CACCCCCGTGTCCTCCTG 61.706 72.222 0.00 0.00 35.10 3.86
906 1129 3.775654 CCCCGTGTCCTCCTGCTC 61.776 72.222 0.00 0.00 0.00 4.26
1273 1506 1.539496 CGTCTCGTCTCCCTCCTCTAG 60.539 61.905 0.00 0.00 0.00 2.43
1310 1543 2.020559 CGCGCGTTCAATCTGCTC 59.979 61.111 24.19 0.00 0.00 4.26
1316 1551 1.446907 CGTTCAATCTGCTCCTGCTT 58.553 50.000 0.00 0.00 40.48 3.91
1317 1552 1.808945 CGTTCAATCTGCTCCTGCTTT 59.191 47.619 0.00 0.00 40.48 3.51
1767 2037 7.370383 ACTGTATGTTTTTATTCAGCTGTTGG 58.630 34.615 14.67 0.00 31.09 3.77
1836 2109 5.189736 TCCTCTACTGAATTTAGCACCATGT 59.810 40.000 0.00 0.00 0.00 3.21
1839 2112 6.711277 TCTACTGAATTTAGCACCATGTCTT 58.289 36.000 0.00 0.00 0.00 3.01
1840 2113 5.633830 ACTGAATTTAGCACCATGTCTTG 57.366 39.130 0.00 0.00 0.00 3.02
1841 2114 5.072741 ACTGAATTTAGCACCATGTCTTGT 58.927 37.500 0.00 0.00 0.00 3.16
2002 2279 0.902048 CTCTCTCTCCAGCACCACCA 60.902 60.000 0.00 0.00 0.00 4.17
2125 2425 1.586422 ATGATGAATCCAAGGTCGCG 58.414 50.000 0.00 0.00 0.00 5.87
2314 2614 2.401766 CGACCCTGCCATGCTCAAC 61.402 63.158 0.00 0.00 0.00 3.18
2390 2694 4.065088 GCTTGTTCAAGTGGTCACTGATA 58.935 43.478 13.04 0.00 41.58 2.15
2491 2796 1.138036 CATCAATGTGTGGCAGCCG 59.862 57.895 7.03 0.00 0.00 5.52
2781 3095 5.389859 TTTCCTCTGTGTTGCAATAATGG 57.610 39.130 0.59 1.17 0.00 3.16
2807 3121 1.271379 GCACTGCTGAAAGGACCCTTA 60.271 52.381 1.15 0.00 34.84 2.69
2820 3137 2.227194 GACCCTTACACTTTGGTGGTG 58.773 52.381 1.29 0.00 46.85 4.17
2835 3152 2.166664 GGTGGTGGTAGAAGCTAGACTG 59.833 54.545 0.00 0.00 0.00 3.51
2846 3163 4.647399 AGAAGCTAGACTGGACTACATTCC 59.353 45.833 0.00 0.00 36.03 3.01
2854 3171 5.491078 AGACTGGACTACATTCCCCATTTTA 59.509 40.000 0.00 0.00 34.33 1.52
2861 3178 8.383175 GGACTACATTCCCCATTTTATCTGATA 58.617 37.037 0.00 0.00 0.00 2.15
2862 3179 9.442047 GACTACATTCCCCATTTTATCTGATAG 57.558 37.037 0.00 0.00 0.00 2.08
2863 3180 7.885399 ACTACATTCCCCATTTTATCTGATAGC 59.115 37.037 0.00 0.00 0.00 2.97
2872 3189 9.075678 CCCATTTTATCTGATAGCATTTCTCTT 57.924 33.333 0.00 0.00 0.00 2.85
2884 3201 4.934602 AGCATTTCTCTTTCTGAGCTGTAC 59.065 41.667 0.00 0.00 42.38 2.90
2898 3215 1.340658 CTGTACACACTAGCAGCACG 58.659 55.000 0.00 0.00 0.00 5.34
2952 3269 5.708697 TGATAAGATTGCTTATGATGCTGGG 59.291 40.000 3.12 0.00 45.08 4.45
2955 3272 3.635373 AGATTGCTTATGATGCTGGGTTG 59.365 43.478 0.00 0.00 0.00 3.77
2967 3284 2.224744 TGCTGGGTTGATTAAGCTGTGA 60.225 45.455 0.00 0.00 36.60 3.58
2970 3289 3.674997 TGGGTTGATTAAGCTGTGACTC 58.325 45.455 0.00 0.00 34.76 3.36
2973 3292 5.112686 GGGTTGATTAAGCTGTGACTCTAG 58.887 45.833 0.00 0.00 34.76 2.43
2995 3314 1.439543 AGTCTCTTCCCTTGTGGCTT 58.560 50.000 0.00 0.00 0.00 4.35
2998 3317 3.054802 AGTCTCTTCCCTTGTGGCTTATG 60.055 47.826 0.00 0.00 0.00 1.90
2999 3318 2.912956 TCTCTTCCCTTGTGGCTTATGT 59.087 45.455 0.00 0.00 0.00 2.29
3007 3326 2.099141 TGTGGCTTATGTCTGTGCTC 57.901 50.000 0.00 0.00 0.00 4.26
3097 3416 8.723942 ACTGTAAGATAAACATCACATTCCTC 57.276 34.615 0.00 0.00 37.43 3.71
3101 3420 5.688807 AGATAAACATCACATTCCTCCCAG 58.311 41.667 0.00 0.00 0.00 4.45
3203 3524 6.202762 TGAGTACTGACTTTTGTATTGCTGTG 59.797 38.462 0.00 0.00 35.45 3.66
3204 3525 4.228912 ACTGACTTTTGTATTGCTGTGC 57.771 40.909 0.00 0.00 0.00 4.57
3205 3526 3.631686 ACTGACTTTTGTATTGCTGTGCA 59.368 39.130 0.00 0.00 36.47 4.57
3437 3763 8.255905 CAGAGGAATCTATACATACATGCATGA 58.744 37.037 32.75 16.49 0.00 3.07
3608 3941 3.242220 CGCTGATGCTTGCTAGTTTACAG 60.242 47.826 0.00 0.00 36.97 2.74
3660 3993 8.462016 GTGTTCATGCTTCTCCTGTTATAAAAT 58.538 33.333 0.00 0.00 0.00 1.82
3694 4030 4.157656 TCCCTGCGATCGAAATTTTGAAAT 59.842 37.500 21.57 0.00 0.00 2.17
3714 4050 0.917533 ATGTCTCTTCTGCCAGCCAT 59.082 50.000 0.00 0.00 0.00 4.40
3843 4180 3.575805 TCCCTGGTCATTTTCAAAAGCT 58.424 40.909 0.00 0.00 0.00 3.74
3862 4199 6.535274 AAGCTGTTTCAAAGCATTTTCATC 57.465 33.333 0.00 0.00 43.37 2.92
3945 4295 7.332678 GTGCATGATACTATGATGATAGCACAA 59.667 37.037 0.00 0.00 44.74 3.33
4012 4365 1.533988 TAACTAACTATGCGCGCGCG 61.534 55.000 45.73 45.73 45.51 6.86
4048 4401 1.126488 TTGCAAAAATGCAGGACCCA 58.874 45.000 0.00 0.00 46.21 4.51
4270 4623 4.042187 AGCTACTTCAAGAACATCCAGGTT 59.958 41.667 0.00 0.00 0.00 3.50
4441 4796 5.397142 AGCCTCCAAGAAATGAAATGAAC 57.603 39.130 0.00 0.00 0.00 3.18
4446 4801 4.588106 TCCAAGAAATGAAATGAACTGCCA 59.412 37.500 0.00 0.00 0.00 4.92
4447 4802 4.687483 CCAAGAAATGAAATGAACTGCCAC 59.313 41.667 0.00 0.00 0.00 5.01
4448 4803 5.510179 CCAAGAAATGAAATGAACTGCCACT 60.510 40.000 0.00 0.00 0.00 4.00
4539 4901 0.482446 TTCATTCACACCCCAAGCCT 59.518 50.000 0.00 0.00 0.00 4.58
4540 4902 0.482446 TCATTCACACCCCAAGCCTT 59.518 50.000 0.00 0.00 0.00 4.35
4543 4905 0.555769 TTCACACCCCAAGCCTTTCT 59.444 50.000 0.00 0.00 0.00 2.52
4545 4907 0.961753 CACACCCCAAGCCTTTCTTC 59.038 55.000 0.00 0.00 31.27 2.87
4653 5027 3.214328 AGGTAAGGCAAGTGTTTGACAG 58.786 45.455 0.00 0.00 45.25 3.51
4654 5028 3.118038 AGGTAAGGCAAGTGTTTGACAGA 60.118 43.478 0.00 0.00 45.25 3.41
4655 5029 3.821033 GGTAAGGCAAGTGTTTGACAGAT 59.179 43.478 0.00 0.00 45.25 2.90
4656 5030 4.083271 GGTAAGGCAAGTGTTTGACAGATC 60.083 45.833 0.00 0.00 45.25 2.75
4657 5031 3.213206 AGGCAAGTGTTTGACAGATCA 57.787 42.857 0.00 0.00 45.25 2.92
4757 5131 2.524148 AGGCCTGTTTGGTTGGGC 60.524 61.111 3.11 0.00 45.34 5.36
4833 5278 0.111061 TGAGCTCCCAGCATGTGTTT 59.889 50.000 12.15 0.00 45.56 2.83
4952 5409 1.897473 TCCATCCATCCATCACCTGT 58.103 50.000 0.00 0.00 0.00 4.00
4953 5410 3.059051 TCCATCCATCCATCACCTGTA 57.941 47.619 0.00 0.00 0.00 2.74
4954 5411 2.974794 TCCATCCATCCATCACCTGTAG 59.025 50.000 0.00 0.00 0.00 2.74
4955 5412 2.039480 CCATCCATCCATCACCTGTAGG 59.961 54.545 0.00 0.00 42.17 3.18
4956 5413 2.866923 TCCATCCATCACCTGTAGGA 57.133 50.000 4.64 0.00 38.94 2.94
4957 5414 2.682594 TCCATCCATCACCTGTAGGAG 58.317 52.381 4.64 0.00 38.94 3.69
4958 5415 1.071385 CCATCCATCACCTGTAGGAGC 59.929 57.143 4.64 0.00 38.94 4.70
4959 5416 1.764723 CATCCATCACCTGTAGGAGCA 59.235 52.381 4.64 0.00 38.94 4.26
4960 5417 2.180946 TCCATCACCTGTAGGAGCAT 57.819 50.000 4.64 0.00 38.94 3.79
4961 5418 1.764723 TCCATCACCTGTAGGAGCATG 59.235 52.381 4.64 3.72 38.94 4.06
4962 5419 1.202734 CCATCACCTGTAGGAGCATGG 60.203 57.143 4.64 8.63 38.94 3.66
4963 5420 1.487976 CATCACCTGTAGGAGCATGGT 59.512 52.381 4.64 0.00 38.94 3.55
4964 5421 1.195115 TCACCTGTAGGAGCATGGTC 58.805 55.000 16.65 16.65 38.94 4.02
4965 5422 0.179000 CACCTGTAGGAGCATGGTCC 59.821 60.000 32.30 32.30 38.94 4.46
4966 5423 0.252696 ACCTGTAGGAGCATGGTCCA 60.253 55.000 38.01 24.25 39.34 4.02
4967 5424 0.467384 CCTGTAGGAGCATGGTCCAG 59.533 60.000 38.01 27.83 39.34 3.86
4968 5425 1.198713 CTGTAGGAGCATGGTCCAGT 58.801 55.000 38.01 24.62 39.34 4.00
4969 5426 1.556911 CTGTAGGAGCATGGTCCAGTT 59.443 52.381 38.01 23.96 39.34 3.16
4970 5427 1.278985 TGTAGGAGCATGGTCCAGTTG 59.721 52.381 38.01 0.00 39.34 3.16
4971 5428 1.555075 GTAGGAGCATGGTCCAGTTGA 59.445 52.381 38.01 19.07 39.34 3.18
4972 5429 1.293062 AGGAGCATGGTCCAGTTGAT 58.707 50.000 38.01 19.05 39.34 2.57
4973 5430 1.064906 AGGAGCATGGTCCAGTTGATG 60.065 52.381 38.01 0.00 39.34 3.07
4985 5442 4.833478 CCAGTTGATGGCTATAGGCTAT 57.167 45.455 25.03 16.82 43.83 2.97
4986 5443 5.939764 CCAGTTGATGGCTATAGGCTATA 57.060 43.478 25.03 13.39 43.83 1.31
4987 5444 6.491714 CCAGTTGATGGCTATAGGCTATAT 57.508 41.667 25.03 11.97 43.83 0.86
4988 5445 6.286758 CCAGTTGATGGCTATAGGCTATATG 58.713 44.000 25.03 15.61 43.83 1.78
4989 5446 6.098838 CCAGTTGATGGCTATAGGCTATATGA 59.901 42.308 25.03 6.07 43.83 2.15
4990 5447 6.983307 CAGTTGATGGCTATAGGCTATATGAC 59.017 42.308 25.03 15.65 42.23 3.06
4991 5448 6.669591 AGTTGATGGCTATAGGCTATATGACA 59.330 38.462 25.03 15.72 42.23 3.58
4992 5449 7.346698 AGTTGATGGCTATAGGCTATATGACAT 59.653 37.037 25.03 21.93 42.23 3.06
4993 5450 7.681259 TGATGGCTATAGGCTATATGACATT 57.319 36.000 25.03 12.91 42.23 2.71
4994 5451 7.503549 TGATGGCTATAGGCTATATGACATTG 58.496 38.462 25.03 10.31 42.23 2.82
4995 5452 5.674525 TGGCTATAGGCTATATGACATTGC 58.325 41.667 25.03 11.77 41.69 3.56
4996 5453 5.059833 GGCTATAGGCTATATGACATTGCC 58.940 45.833 18.61 17.63 43.52 4.52
4997 5454 5.396772 GGCTATAGGCTATATGACATTGCCA 60.397 44.000 23.39 12.04 45.42 4.92
4998 5455 6.294473 GCTATAGGCTATATGACATTGCCAT 58.706 40.000 21.05 15.99 45.42 4.40
4999 5456 7.445121 GCTATAGGCTATATGACATTGCCATA 58.555 38.462 21.05 16.16 45.42 2.74
5000 5457 8.099537 GCTATAGGCTATATGACATTGCCATAT 58.900 37.037 21.05 9.91 45.42 1.78
5001 5458 9.650539 CTATAGGCTATATGACATTGCCATATC 57.349 37.037 21.05 0.00 45.42 1.63
5002 5459 6.317663 AGGCTATATGACATTGCCATATCA 57.682 37.500 21.05 0.00 45.42 2.15
5003 5460 6.907961 AGGCTATATGACATTGCCATATCAT 58.092 36.000 21.05 0.00 45.42 2.45
5004 5461 6.996879 AGGCTATATGACATTGCCATATCATC 59.003 38.462 21.05 1.60 45.42 2.92
5005 5462 6.996879 GGCTATATGACATTGCCATATCATCT 59.003 38.462 8.52 0.00 42.79 2.90
5006 5463 8.152898 GGCTATATGACATTGCCATATCATCTA 58.847 37.037 8.52 0.00 42.79 1.98
5007 5464 9.722184 GCTATATGACATTGCCATATCATCTAT 57.278 33.333 8.52 0.00 38.02 1.98
5010 5467 9.722184 ATATGACATTGCCATATCATCTATAGC 57.278 33.333 0.00 0.00 33.29 2.97
5011 5468 6.351711 TGACATTGCCATATCATCTATAGCC 58.648 40.000 0.00 0.00 0.00 3.93
5012 5469 6.070078 TGACATTGCCATATCATCTATAGCCA 60.070 38.462 0.00 0.00 0.00 4.75
5013 5470 6.724351 ACATTGCCATATCATCTATAGCCAA 58.276 36.000 0.00 0.00 0.00 4.52
5014 5471 6.600822 ACATTGCCATATCATCTATAGCCAAC 59.399 38.462 0.00 0.00 0.00 3.77
5015 5472 5.102953 TGCCATATCATCTATAGCCAACC 57.897 43.478 0.00 0.00 0.00 3.77
5016 5473 4.784838 TGCCATATCATCTATAGCCAACCT 59.215 41.667 0.00 0.00 0.00 3.50
5017 5474 5.251468 TGCCATATCATCTATAGCCAACCTT 59.749 40.000 0.00 0.00 0.00 3.50
5018 5475 5.587844 GCCATATCATCTATAGCCAACCTTG 59.412 44.000 0.00 0.00 0.00 3.61
5019 5476 6.715280 CCATATCATCTATAGCCAACCTTGT 58.285 40.000 0.00 0.00 0.00 3.16
5020 5477 7.581464 GCCATATCATCTATAGCCAACCTTGTA 60.581 40.741 0.00 0.00 0.00 2.41
5021 5478 7.984050 CCATATCATCTATAGCCAACCTTGTAG 59.016 40.741 0.00 0.00 0.00 2.74
5022 5479 8.535335 CATATCATCTATAGCCAACCTTGTAGT 58.465 37.037 0.00 0.00 0.00 2.73
5023 5480 6.406692 TCATCTATAGCCAACCTTGTAGTC 57.593 41.667 0.00 0.00 0.00 2.59
5024 5481 6.136857 TCATCTATAGCCAACCTTGTAGTCT 58.863 40.000 0.00 0.00 0.00 3.24
5025 5482 6.611642 TCATCTATAGCCAACCTTGTAGTCTT 59.388 38.462 0.00 0.00 0.00 3.01
5026 5483 6.869206 TCTATAGCCAACCTTGTAGTCTTT 57.131 37.500 0.00 0.00 0.00 2.52
5027 5484 7.966339 TCTATAGCCAACCTTGTAGTCTTTA 57.034 36.000 0.00 0.00 0.00 1.85
5028 5485 8.370266 TCTATAGCCAACCTTGTAGTCTTTAA 57.630 34.615 0.00 0.00 0.00 1.52
5029 5486 8.818860 TCTATAGCCAACCTTGTAGTCTTTAAA 58.181 33.333 0.00 0.00 0.00 1.52
5030 5487 9.614792 CTATAGCCAACCTTGTAGTCTTTAAAT 57.385 33.333 0.00 0.00 0.00 1.40
5034 5491 9.969001 AGCCAACCTTGTAGTCTTTAAATATAA 57.031 29.630 0.00 0.00 0.00 0.98
5062 5519 9.415008 AGTAAGATCTAAAGATGAGCTACTTCA 57.585 33.333 0.00 0.00 34.37 3.02
5074 5531 9.829507 AGATGAGCTACTTCATTAATATATGGC 57.170 33.333 0.00 0.00 37.90 4.40
5075 5532 8.970859 ATGAGCTACTTCATTAATATATGGCC 57.029 34.615 0.00 0.00 34.17 5.36
5076 5533 7.338710 TGAGCTACTTCATTAATATATGGCCC 58.661 38.462 0.00 0.00 0.00 5.80
5077 5534 7.037658 TGAGCTACTTCATTAATATATGGCCCA 60.038 37.037 0.00 0.00 0.00 5.36
5078 5535 7.876371 AGCTACTTCATTAATATATGGCCCAT 58.124 34.615 0.00 0.00 0.00 4.00
5079 5536 7.995488 AGCTACTTCATTAATATATGGCCCATC 59.005 37.037 0.00 0.00 0.00 3.51
5080 5537 7.995488 GCTACTTCATTAATATATGGCCCATCT 59.005 37.037 0.00 0.00 0.00 2.90
5081 5538 9.553064 CTACTTCATTAATATATGGCCCATCTC 57.447 37.037 0.00 0.00 0.00 2.75
5082 5539 7.349598 ACTTCATTAATATATGGCCCATCTCC 58.650 38.462 0.00 0.00 0.00 3.71
5083 5540 6.266131 TCATTAATATATGGCCCATCTCCC 57.734 41.667 0.00 0.00 0.00 4.30
5084 5541 5.735624 TCATTAATATATGGCCCATCTCCCA 59.264 40.000 0.00 0.00 35.21 4.37
5085 5542 5.450818 TTAATATATGGCCCATCTCCCAC 57.549 43.478 0.00 0.00 33.17 4.61
5086 5543 2.741159 TATATGGCCCATCTCCCACT 57.259 50.000 0.00 0.00 33.17 4.00
5087 5544 1.366319 ATATGGCCCATCTCCCACTC 58.634 55.000 0.00 0.00 33.17 3.51
5088 5545 0.268869 TATGGCCCATCTCCCACTCT 59.731 55.000 0.00 0.00 33.17 3.24
5089 5546 0.625683 ATGGCCCATCTCCCACTCTT 60.626 55.000 0.00 0.00 33.17 2.85
5090 5547 0.044092 TGGCCCATCTCCCACTCTTA 59.956 55.000 0.00 0.00 0.00 2.10
5091 5548 1.345422 TGGCCCATCTCCCACTCTTAT 60.345 52.381 0.00 0.00 0.00 1.73
5092 5549 2.090210 TGGCCCATCTCCCACTCTTATA 60.090 50.000 0.00 0.00 0.00 0.98
5093 5550 3.185455 GGCCCATCTCCCACTCTTATAT 58.815 50.000 0.00 0.00 0.00 0.86
5094 5551 4.202890 TGGCCCATCTCCCACTCTTATATA 60.203 45.833 0.00 0.00 0.00 0.86
5095 5552 4.407296 GGCCCATCTCCCACTCTTATATAG 59.593 50.000 0.00 0.00 0.00 1.31
5096 5553 5.026790 GCCCATCTCCCACTCTTATATAGT 58.973 45.833 0.00 0.00 0.00 2.12
5097 5554 5.105146 GCCCATCTCCCACTCTTATATAGTG 60.105 48.000 8.21 8.21 43.26 2.74
5098 5555 5.105146 CCCATCTCCCACTCTTATATAGTGC 60.105 48.000 9.29 0.00 42.47 4.40
5099 5556 5.105146 CCATCTCCCACTCTTATATAGTGCC 60.105 48.000 9.29 0.00 42.47 5.01
5100 5557 5.340891 TCTCCCACTCTTATATAGTGCCT 57.659 43.478 9.29 0.00 42.47 4.75
5101 5558 6.464530 TCTCCCACTCTTATATAGTGCCTA 57.535 41.667 9.29 0.00 42.47 3.93
5102 5559 6.860034 TCTCCCACTCTTATATAGTGCCTAA 58.140 40.000 9.29 0.00 42.47 2.69
5103 5560 6.948886 TCTCCCACTCTTATATAGTGCCTAAG 59.051 42.308 9.29 5.21 42.47 2.18
5104 5561 6.860034 TCCCACTCTTATATAGTGCCTAAGA 58.140 40.000 9.29 0.00 42.47 2.10
5106 5563 6.350612 CCCACTCTTATATAGTGCCTAAGAGC 60.351 46.154 15.41 0.00 46.44 4.09
5107 5564 6.209589 CCACTCTTATATAGTGCCTAAGAGCA 59.790 42.308 15.41 0.00 46.44 4.26
5122 5579 4.380628 GCACGTGCTGCAGCTGAC 62.381 66.667 36.61 26.48 46.29 3.51
5123 5580 2.664185 CACGTGCTGCAGCTGACT 60.664 61.111 36.61 15.57 42.66 3.41
5124 5581 2.356793 ACGTGCTGCAGCTGACTC 60.357 61.111 36.61 20.31 42.66 3.36
5125 5582 2.048409 CGTGCTGCAGCTGACTCT 60.048 61.111 36.61 0.00 42.66 3.24
5126 5583 1.667191 CGTGCTGCAGCTGACTCTT 60.667 57.895 36.61 0.00 42.66 2.85
5127 5584 0.389037 CGTGCTGCAGCTGACTCTTA 60.389 55.000 36.61 13.65 42.66 2.10
5128 5585 1.738365 CGTGCTGCAGCTGACTCTTAT 60.738 52.381 36.61 0.00 42.66 1.73
5129 5586 2.354259 GTGCTGCAGCTGACTCTTATT 58.646 47.619 36.61 0.00 42.66 1.40
5130 5587 2.351111 GTGCTGCAGCTGACTCTTATTC 59.649 50.000 36.61 6.22 42.66 1.75
5131 5588 2.235650 TGCTGCAGCTGACTCTTATTCT 59.764 45.455 36.61 0.00 42.66 2.40
5132 5589 2.608546 GCTGCAGCTGACTCTTATTCTG 59.391 50.000 31.33 1.28 38.21 3.02
5133 5590 3.859443 CTGCAGCTGACTCTTATTCTGT 58.141 45.455 20.43 0.00 0.00 3.41
5134 5591 4.679106 GCTGCAGCTGACTCTTATTCTGTA 60.679 45.833 31.33 0.00 38.21 2.74
5135 5592 5.003692 TGCAGCTGACTCTTATTCTGTAG 57.996 43.478 20.43 0.00 0.00 2.74
5136 5593 3.801594 GCAGCTGACTCTTATTCTGTAGC 59.198 47.826 20.43 0.00 0.00 3.58
5137 5594 4.367450 CAGCTGACTCTTATTCTGTAGCC 58.633 47.826 8.42 0.00 0.00 3.93
5138 5595 3.386402 AGCTGACTCTTATTCTGTAGCCC 59.614 47.826 0.00 0.00 0.00 5.19
5139 5596 3.797184 GCTGACTCTTATTCTGTAGCCCG 60.797 52.174 0.00 0.00 0.00 6.13
5140 5597 2.100916 TGACTCTTATTCTGTAGCCCGC 59.899 50.000 0.00 0.00 0.00 6.13
5141 5598 2.362717 GACTCTTATTCTGTAGCCCGCT 59.637 50.000 0.00 0.00 0.00 5.52
5142 5599 2.362717 ACTCTTATTCTGTAGCCCGCTC 59.637 50.000 0.00 0.00 0.00 5.03
5143 5600 1.687123 TCTTATTCTGTAGCCCGCTCC 59.313 52.381 0.00 0.00 0.00 4.70
5144 5601 1.689273 CTTATTCTGTAGCCCGCTCCT 59.311 52.381 0.00 0.00 0.00 3.69
5145 5602 1.789523 TATTCTGTAGCCCGCTCCTT 58.210 50.000 0.00 0.00 0.00 3.36
5146 5603 1.789523 ATTCTGTAGCCCGCTCCTTA 58.210 50.000 0.00 0.00 0.00 2.69
5147 5604 1.789523 TTCTGTAGCCCGCTCCTTAT 58.210 50.000 0.00 0.00 0.00 1.73
5148 5605 1.329256 TCTGTAGCCCGCTCCTTATC 58.671 55.000 0.00 0.00 0.00 1.75
5149 5606 1.133450 TCTGTAGCCCGCTCCTTATCT 60.133 52.381 0.00 0.00 0.00 1.98
5150 5607 1.271102 CTGTAGCCCGCTCCTTATCTC 59.729 57.143 0.00 0.00 0.00 2.75
5151 5608 1.133450 TGTAGCCCGCTCCTTATCTCT 60.133 52.381 0.00 0.00 0.00 3.10
5152 5609 1.542472 GTAGCCCGCTCCTTATCTCTC 59.458 57.143 0.00 0.00 0.00 3.20
5153 5610 0.187361 AGCCCGCTCCTTATCTCTCT 59.813 55.000 0.00 0.00 0.00 3.10
5154 5611 0.601057 GCCCGCTCCTTATCTCTCTC 59.399 60.000 0.00 0.00 0.00 3.20
5155 5612 1.253100 CCCGCTCCTTATCTCTCTCC 58.747 60.000 0.00 0.00 0.00 3.71
5156 5613 1.203001 CCCGCTCCTTATCTCTCTCCT 60.203 57.143 0.00 0.00 0.00 3.69
5157 5614 2.159382 CCGCTCCTTATCTCTCTCCTC 58.841 57.143 0.00 0.00 0.00 3.71
5158 5615 2.224769 CCGCTCCTTATCTCTCTCCTCT 60.225 54.545 0.00 0.00 0.00 3.69
5159 5616 3.486383 CGCTCCTTATCTCTCTCCTCTT 58.514 50.000 0.00 0.00 0.00 2.85
5160 5617 3.502211 CGCTCCTTATCTCTCTCCTCTTC 59.498 52.174 0.00 0.00 0.00 2.87
5161 5618 4.729868 GCTCCTTATCTCTCTCCTCTTCT 58.270 47.826 0.00 0.00 0.00 2.85
5162 5619 4.762251 GCTCCTTATCTCTCTCCTCTTCTC 59.238 50.000 0.00 0.00 0.00 2.87
5163 5620 5.456763 GCTCCTTATCTCTCTCCTCTTCTCT 60.457 48.000 0.00 0.00 0.00 3.10
5164 5621 6.590656 TCCTTATCTCTCTCCTCTTCTCTT 57.409 41.667 0.00 0.00 0.00 2.85
5165 5622 6.601332 TCCTTATCTCTCTCCTCTTCTCTTC 58.399 44.000 0.00 0.00 0.00 2.87
5166 5623 5.770162 CCTTATCTCTCTCCTCTTCTCTTCC 59.230 48.000 0.00 0.00 0.00 3.46
5167 5624 3.662759 TCTCTCTCCTCTTCTCTTCCC 57.337 52.381 0.00 0.00 0.00 3.97
5168 5625 3.197983 TCTCTCTCCTCTTCTCTTCCCT 58.802 50.000 0.00 0.00 0.00 4.20
5169 5626 3.202151 TCTCTCTCCTCTTCTCTTCCCTC 59.798 52.174 0.00 0.00 0.00 4.30
5170 5627 2.243736 TCTCTCCTCTTCTCTTCCCTCC 59.756 54.545 0.00 0.00 0.00 4.30
5171 5628 2.003830 TCTCCTCTTCTCTTCCCTCCA 58.996 52.381 0.00 0.00 0.00 3.86
5172 5629 2.589664 TCTCCTCTTCTCTTCCCTCCAT 59.410 50.000 0.00 0.00 0.00 3.41
5173 5630 2.699846 CTCCTCTTCTCTTCCCTCCATG 59.300 54.545 0.00 0.00 0.00 3.66
5174 5631 2.045047 TCCTCTTCTCTTCCCTCCATGT 59.955 50.000 0.00 0.00 0.00 3.21
5175 5632 2.433970 CCTCTTCTCTTCCCTCCATGTC 59.566 54.545 0.00 0.00 0.00 3.06
5176 5633 3.102972 CTCTTCTCTTCCCTCCATGTCA 58.897 50.000 0.00 0.00 0.00 3.58
5177 5634 3.102972 TCTTCTCTTCCCTCCATGTCAG 58.897 50.000 0.00 0.00 0.00 3.51
5178 5635 1.198713 TCTCTTCCCTCCATGTCAGC 58.801 55.000 0.00 0.00 0.00 4.26
5179 5636 0.907486 CTCTTCCCTCCATGTCAGCA 59.093 55.000 0.00 0.00 0.00 4.41
5180 5637 1.280133 CTCTTCCCTCCATGTCAGCAA 59.720 52.381 0.00 0.00 0.00 3.91
5181 5638 1.704628 TCTTCCCTCCATGTCAGCAAA 59.295 47.619 0.00 0.00 0.00 3.68
5182 5639 2.108075 TCTTCCCTCCATGTCAGCAAAA 59.892 45.455 0.00 0.00 0.00 2.44
5183 5640 2.673775 TCCCTCCATGTCAGCAAAAA 57.326 45.000 0.00 0.00 0.00 1.94
5184 5641 2.517959 TCCCTCCATGTCAGCAAAAAG 58.482 47.619 0.00 0.00 0.00 2.27
5185 5642 2.108075 TCCCTCCATGTCAGCAAAAAGA 59.892 45.455 0.00 0.00 0.00 2.52
5186 5643 3.094572 CCCTCCATGTCAGCAAAAAGAT 58.905 45.455 0.00 0.00 0.00 2.40
5187 5644 4.018506 TCCCTCCATGTCAGCAAAAAGATA 60.019 41.667 0.00 0.00 0.00 1.98
5188 5645 4.706476 CCCTCCATGTCAGCAAAAAGATAA 59.294 41.667 0.00 0.00 0.00 1.75
5189 5646 5.361857 CCCTCCATGTCAGCAAAAAGATAAT 59.638 40.000 0.00 0.00 0.00 1.28
5190 5647 6.547141 CCCTCCATGTCAGCAAAAAGATAATA 59.453 38.462 0.00 0.00 0.00 0.98
5191 5648 7.232127 CCCTCCATGTCAGCAAAAAGATAATAT 59.768 37.037 0.00 0.00 0.00 1.28
5192 5649 8.636213 CCTCCATGTCAGCAAAAAGATAATATT 58.364 33.333 0.00 0.00 0.00 1.28
5211 5668 9.813826 ATAATATTTTAATCCTTACAGCCTGCT 57.186 29.630 0.00 0.00 0.00 4.24
5212 5669 8.539117 AATATTTTAATCCTTACAGCCTGCTT 57.461 30.769 0.00 0.00 0.00 3.91
5213 5670 9.640952 AATATTTTAATCCTTACAGCCTGCTTA 57.359 29.630 0.00 0.00 0.00 3.09
5214 5671 6.753107 TTTTAATCCTTACAGCCTGCTTAC 57.247 37.500 0.00 0.00 0.00 2.34
5215 5672 5.429681 TTAATCCTTACAGCCTGCTTACA 57.570 39.130 0.00 0.00 0.00 2.41
5216 5673 4.510167 AATCCTTACAGCCTGCTTACAT 57.490 40.909 0.00 0.00 0.00 2.29
5217 5674 5.630415 AATCCTTACAGCCTGCTTACATA 57.370 39.130 0.00 0.00 0.00 2.29
5218 5675 5.630415 ATCCTTACAGCCTGCTTACATAA 57.370 39.130 0.00 0.00 0.00 1.90
5219 5676 5.023533 TCCTTACAGCCTGCTTACATAAG 57.976 43.478 0.00 0.00 36.40 1.73
5272 5729 6.064060 CAGGAATAGGATGGCTACAATGAAA 58.936 40.000 0.00 0.00 0.00 2.69
5273 5730 6.718454 CAGGAATAGGATGGCTACAATGAAAT 59.282 38.462 0.00 0.00 0.00 2.17
5274 5731 6.718454 AGGAATAGGATGGCTACAATGAAATG 59.282 38.462 0.00 0.00 0.00 2.32
5275 5732 6.716628 GGAATAGGATGGCTACAATGAAATGA 59.283 38.462 0.00 0.00 0.00 2.57
5276 5733 7.231317 GGAATAGGATGGCTACAATGAAATGAA 59.769 37.037 0.00 0.00 0.00 2.57
5278 5735 9.812347 AATAGGATGGCTACAATGAAATGAATA 57.188 29.630 0.00 0.00 0.00 1.75
5282 5739 7.014615 GGATGGCTACAATGAAATGAATAAGGT 59.985 37.037 0.00 0.00 0.00 3.50
5293 5751 7.223584 TGAAATGAATAAGGTTGAGTGAGTGA 58.776 34.615 0.00 0.00 0.00 3.41
5361 5819 0.949105 ATTCGGAAGCGAGTTTGCGT 60.949 50.000 12.31 0.00 41.74 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.104965 CGTATCATCAAAACTATGTTTTAGGGA 57.895 33.333 7.90 6.58 0.00 4.20
2 3 8.889717 ACGTATCATCAAAACTATGTTTTAGGG 58.110 33.333 7.90 2.26 0.00 3.53
56 57 9.362151 GGGTTGGATCCAAAATAGATTAATACA 57.638 33.333 28.64 0.00 37.70 2.29
57 58 9.362151 TGGGTTGGATCCAAAATAGATTAATAC 57.638 33.333 28.64 11.92 37.70 1.89
58 59 9.362151 GTGGGTTGGATCCAAAATAGATTAATA 57.638 33.333 28.64 0.00 37.70 0.98
59 60 7.014230 CGTGGGTTGGATCCAAAATAGATTAAT 59.986 37.037 28.64 0.00 37.70 1.40
60 61 6.320164 CGTGGGTTGGATCCAAAATAGATTAA 59.680 38.462 28.64 0.00 37.70 1.40
61 62 5.825679 CGTGGGTTGGATCCAAAATAGATTA 59.174 40.000 28.64 0.10 37.70 1.75
62 63 4.644685 CGTGGGTTGGATCCAAAATAGATT 59.355 41.667 28.64 0.00 37.70 2.40
63 64 4.207165 CGTGGGTTGGATCCAAAATAGAT 58.793 43.478 28.64 0.00 37.70 1.98
64 65 3.009695 ACGTGGGTTGGATCCAAAATAGA 59.990 43.478 28.64 8.61 37.70 1.98
65 66 3.352648 ACGTGGGTTGGATCCAAAATAG 58.647 45.455 28.64 19.53 37.70 1.73
66 67 3.443145 ACGTGGGTTGGATCCAAAATA 57.557 42.857 28.64 14.36 37.70 1.40
67 68 2.302587 ACGTGGGTTGGATCCAAAAT 57.697 45.000 28.64 8.01 37.70 1.82
68 69 2.074729 AACGTGGGTTGGATCCAAAA 57.925 45.000 28.64 14.50 37.70 2.44
69 70 3.831651 AACGTGGGTTGGATCCAAA 57.168 47.368 28.64 11.12 37.70 3.28
94 95 8.811994 ACCAAGCAAAACTATAATTTGTATGGT 58.188 29.630 21.24 21.24 44.53 3.55
99 100 7.806014 CGTGTACCAAGCAAAACTATAATTTGT 59.194 33.333 10.64 0.00 39.42 2.83
100 101 7.201316 GCGTGTACCAAGCAAAACTATAATTTG 60.201 37.037 6.38 6.38 38.62 2.32
101 102 6.804783 GCGTGTACCAAGCAAAACTATAATTT 59.195 34.615 0.00 0.00 38.62 1.82
102 103 6.150474 AGCGTGTACCAAGCAAAACTATAATT 59.850 34.615 5.04 0.00 41.02 1.40
103 104 5.646360 AGCGTGTACCAAGCAAAACTATAAT 59.354 36.000 5.04 0.00 41.02 1.28
104 105 4.998672 AGCGTGTACCAAGCAAAACTATAA 59.001 37.500 5.04 0.00 41.02 0.98
105 106 4.571919 AGCGTGTACCAAGCAAAACTATA 58.428 39.130 5.04 0.00 41.02 1.31
106 107 3.408634 AGCGTGTACCAAGCAAAACTAT 58.591 40.909 5.04 0.00 41.02 2.12
107 108 2.803956 GAGCGTGTACCAAGCAAAACTA 59.196 45.455 5.04 0.00 41.02 2.24
108 109 1.602377 GAGCGTGTACCAAGCAAAACT 59.398 47.619 5.04 0.00 41.02 2.66
109 110 1.334689 GGAGCGTGTACCAAGCAAAAC 60.335 52.381 5.04 0.00 41.02 2.43
110 111 0.948678 GGAGCGTGTACCAAGCAAAA 59.051 50.000 5.04 0.00 41.02 2.44
111 112 0.107831 AGGAGCGTGTACCAAGCAAA 59.892 50.000 5.04 0.00 41.02 3.68
112 113 0.107831 AAGGAGCGTGTACCAAGCAA 59.892 50.000 5.04 0.00 41.02 3.91
113 114 0.970640 TAAGGAGCGTGTACCAAGCA 59.029 50.000 5.04 0.00 41.02 3.91
114 115 2.088950 TTAAGGAGCGTGTACCAAGC 57.911 50.000 0.00 0.00 39.02 4.01
115 116 4.062991 ACTTTTAAGGAGCGTGTACCAAG 58.937 43.478 0.00 0.00 0.00 3.61
116 117 4.075963 ACTTTTAAGGAGCGTGTACCAA 57.924 40.909 0.00 0.00 0.00 3.67
117 118 3.756933 ACTTTTAAGGAGCGTGTACCA 57.243 42.857 0.00 0.00 0.00 3.25
118 119 4.512571 TCAAACTTTTAAGGAGCGTGTACC 59.487 41.667 0.00 0.00 0.00 3.34
119 120 5.662211 TCAAACTTTTAAGGAGCGTGTAC 57.338 39.130 0.00 0.00 0.00 2.90
120 121 5.276963 CGTTCAAACTTTTAAGGAGCGTGTA 60.277 40.000 0.00 0.00 0.00 2.90
121 122 4.495184 CGTTCAAACTTTTAAGGAGCGTGT 60.495 41.667 0.00 0.00 0.00 4.49
122 123 3.966218 CGTTCAAACTTTTAAGGAGCGTG 59.034 43.478 0.00 0.00 0.00 5.34
123 124 3.002965 CCGTTCAAACTTTTAAGGAGCGT 59.997 43.478 0.00 0.00 31.60 5.07
124 125 3.249080 TCCGTTCAAACTTTTAAGGAGCG 59.751 43.478 0.00 0.00 33.01 5.03
125 126 4.823790 TCCGTTCAAACTTTTAAGGAGC 57.176 40.909 0.00 0.00 0.00 4.70
126 127 6.803154 AGATCCGTTCAAACTTTTAAGGAG 57.197 37.500 0.00 0.00 0.00 3.69
127 128 8.680039 TTAAGATCCGTTCAAACTTTTAAGGA 57.320 30.769 0.00 0.00 0.00 3.36
128 129 9.394477 CTTTAAGATCCGTTCAAACTTTTAAGG 57.606 33.333 0.00 0.00 0.00 2.69
129 130 9.946165 ACTTTAAGATCCGTTCAAACTTTTAAG 57.054 29.630 0.00 0.00 0.00 1.85
132 133 9.726232 GTAACTTTAAGATCCGTTCAAACTTTT 57.274 29.630 0.00 0.00 0.00 2.27
133 134 9.117183 AGTAACTTTAAGATCCGTTCAAACTTT 57.883 29.630 0.00 0.00 0.00 2.66
134 135 8.672823 AGTAACTTTAAGATCCGTTCAAACTT 57.327 30.769 0.00 0.00 0.00 2.66
135 136 8.672823 AAGTAACTTTAAGATCCGTTCAAACT 57.327 30.769 0.00 0.00 0.00 2.66
139 140 9.545105 TGTTTAAGTAACTTTAAGATCCGTTCA 57.455 29.630 0.00 0.00 37.64 3.18
141 142 8.996271 CCTGTTTAAGTAACTTTAAGATCCGTT 58.004 33.333 0.00 0.00 37.64 4.44
142 143 7.118825 GCCTGTTTAAGTAACTTTAAGATCCGT 59.881 37.037 0.00 0.00 37.64 4.69
143 144 7.333672 AGCCTGTTTAAGTAACTTTAAGATCCG 59.666 37.037 0.00 0.00 37.64 4.18
144 145 8.563123 AGCCTGTTTAAGTAACTTTAAGATCC 57.437 34.615 0.00 0.00 37.64 3.36
147 148 9.362539 CGATAGCCTGTTTAAGTAACTTTAAGA 57.637 33.333 0.00 0.00 37.64 2.10
148 149 9.148104 ACGATAGCCTGTTTAAGTAACTTTAAG 57.852 33.333 0.00 0.00 37.33 1.85
149 150 9.143631 GACGATAGCCTGTTTAAGTAACTTTAA 57.856 33.333 0.00 0.00 37.33 1.52
164 165 4.627467 GCAGGTTAATATGACGATAGCCTG 59.373 45.833 9.67 9.67 42.59 4.85
172 173 6.603237 TTTGATCTGCAGGTTAATATGACG 57.397 37.500 15.13 0.00 0.00 4.35
206 207 4.503741 TGATCTTTCCTTGCGAAAAAGG 57.496 40.909 5.80 5.80 46.99 3.11
207 208 5.108254 CGTTTGATCTTTCCTTGCGAAAAAG 60.108 40.000 0.00 3.15 39.98 2.27
213 214 2.969443 ACGTTTGATCTTTCCTTGCG 57.031 45.000 0.00 0.00 0.00 4.85
214 215 5.938322 TCAATACGTTTGATCTTTCCTTGC 58.062 37.500 0.00 0.00 0.00 4.01
217 218 9.838339 ATCTATTCAATACGTTTGATCTTTCCT 57.162 29.630 11.98 0.00 0.00 3.36
261 272 6.301486 CAGTCAAAATCCCAGGATGATATGA 58.699 40.000 0.00 0.61 39.69 2.15
273 284 2.919228 AGTATCCGCAGTCAAAATCCC 58.081 47.619 0.00 0.00 0.00 3.85
274 285 4.636206 AGAAAGTATCCGCAGTCAAAATCC 59.364 41.667 0.00 0.00 0.00 3.01
275 286 5.803020 AGAAAGTATCCGCAGTCAAAATC 57.197 39.130 0.00 0.00 0.00 2.17
276 287 7.770897 AGATTAGAAAGTATCCGCAGTCAAAAT 59.229 33.333 0.00 0.00 0.00 1.82
277 288 7.103641 AGATTAGAAAGTATCCGCAGTCAAAA 58.896 34.615 0.00 0.00 0.00 2.44
278 289 6.640518 AGATTAGAAAGTATCCGCAGTCAAA 58.359 36.000 0.00 0.00 0.00 2.69
279 290 6.222038 AGATTAGAAAGTATCCGCAGTCAA 57.778 37.500 0.00 0.00 0.00 3.18
284 295 6.925718 CAGATGAAGATTAGAAAGTATCCGCA 59.074 38.462 0.00 0.00 0.00 5.69
285 296 6.926272 ACAGATGAAGATTAGAAAGTATCCGC 59.074 38.462 0.00 0.00 0.00 5.54
295 308 5.961272 TGCACGTTACAGATGAAGATTAGA 58.039 37.500 0.00 0.00 0.00 2.10
313 326 0.984109 GTTGCCGATTTCAATGCACG 59.016 50.000 0.00 0.00 32.63 5.34
413 458 2.180276 ACTCTTCTCCTACGGCACAAT 58.820 47.619 0.00 0.00 0.00 2.71
434 502 1.973138 CGACGAGTTTCCATGTACGT 58.027 50.000 0.00 0.00 36.71 3.57
455 648 1.878953 ACAGTGGTTGATTGACGGAC 58.121 50.000 0.00 0.00 0.00 4.79
715 924 1.006813 AGAGAGAGGCAGAAGGAGGA 58.993 55.000 0.00 0.00 0.00 3.71
716 925 1.063717 AGAGAGAGAGGCAGAAGGAGG 60.064 57.143 0.00 0.00 0.00 4.30
724 933 1.618030 GGGGAGAGAGAGAGAGGCA 59.382 63.158 0.00 0.00 0.00 4.75
725 934 1.528309 CGGGGAGAGAGAGAGAGGC 60.528 68.421 0.00 0.00 0.00 4.70
890 1113 4.135153 CGAGCAGGAGGACACGGG 62.135 72.222 0.00 0.00 0.00 5.28
891 1114 4.803426 GCGAGCAGGAGGACACGG 62.803 72.222 0.00 0.00 0.00 4.94
892 1115 4.803426 GGCGAGCAGGAGGACACG 62.803 72.222 0.00 0.00 0.00 4.49
893 1116 3.363844 GAGGCGAGCAGGAGGACAC 62.364 68.421 0.00 0.00 0.00 3.67
894 1117 3.071206 GAGGCGAGCAGGAGGACA 61.071 66.667 0.00 0.00 0.00 4.02
895 1118 4.200283 CGAGGCGAGCAGGAGGAC 62.200 72.222 0.00 0.00 0.00 3.85
896 1119 4.742649 ACGAGGCGAGCAGGAGGA 62.743 66.667 0.00 0.00 0.00 3.71
897 1120 4.200283 GACGAGGCGAGCAGGAGG 62.200 72.222 0.00 0.00 0.00 4.30
898 1121 4.544689 CGACGAGGCGAGCAGGAG 62.545 72.222 0.00 0.00 0.00 3.69
900 1123 4.838486 GACGACGAGGCGAGCAGG 62.838 72.222 4.95 0.00 34.83 4.85
901 1124 4.838486 GGACGACGAGGCGAGCAG 62.838 72.222 4.95 0.00 34.83 4.24
1310 1543 3.491581 CTTGAGCAAGCAAAGCAGG 57.508 52.632 0.00 0.00 0.00 4.85
1329 1564 6.426980 TCTTTTCATGGATTCATTCACTCG 57.573 37.500 0.00 0.00 0.00 4.18
1332 1567 9.136952 CTCTTTTCTTTTCATGGATTCATTCAC 57.863 33.333 0.00 0.00 0.00 3.18
1673 1917 8.677148 TGAAAGAAGAACACTAGTAGCAAAAT 57.323 30.769 0.00 0.00 0.00 1.82
1674 1918 7.769044 ACTGAAAGAAGAACACTAGTAGCAAAA 59.231 33.333 0.00 0.00 37.43 2.44
1675 1919 7.272978 ACTGAAAGAAGAACACTAGTAGCAAA 58.727 34.615 0.00 0.00 37.43 3.68
1676 1920 6.817184 ACTGAAAGAAGAACACTAGTAGCAA 58.183 36.000 0.00 0.00 37.43 3.91
1677 1921 6.406692 ACTGAAAGAAGAACACTAGTAGCA 57.593 37.500 0.00 0.00 37.43 3.49
1678 1922 6.366604 GGAACTGAAAGAAGAACACTAGTAGC 59.633 42.308 0.00 0.00 37.43 3.58
2002 2279 1.683385 GAAGCTGTGAAAAAGGGCAGT 59.317 47.619 0.00 0.00 0.00 4.40
2125 2425 3.426568 GTGCGCTGCTTCTGGGAC 61.427 66.667 9.73 0.00 0.00 4.46
2314 2614 2.642254 TACCTGGTGGCCGTTCTCG 61.642 63.158 10.23 0.00 36.63 4.04
2390 2694 5.177725 GTCAAAATGACAGGGTTAAACGT 57.822 39.130 5.65 0.00 46.22 3.99
2414 2718 2.011947 TGCTATTGCATGCTGAGACAC 58.988 47.619 20.33 3.15 45.31 3.67
2491 2796 1.509923 GTTGCCCTGCTGAATGCTC 59.490 57.895 0.00 0.00 43.37 4.26
2781 3095 2.160417 GTCCTTTCAGCAGTGCACATAC 59.840 50.000 21.04 7.67 0.00 2.39
2807 3121 2.748465 GCTTCTACCACCACCAAAGTGT 60.748 50.000 0.00 0.00 42.88 3.55
2820 3137 4.525024 TGTAGTCCAGTCTAGCTTCTACC 58.475 47.826 0.00 0.00 0.00 3.18
2835 3152 6.601332 TCAGATAAAATGGGGAATGTAGTCC 58.399 40.000 0.00 0.00 36.90 3.85
2846 3163 8.632906 AGAGAAATGCTATCAGATAAAATGGG 57.367 34.615 0.00 0.00 0.00 4.00
2872 3189 2.890945 TGCTAGTGTGTACAGCTCAGAA 59.109 45.455 0.00 0.00 34.31 3.02
2884 3201 0.038618 TACCACGTGCTGCTAGTGTG 60.039 55.000 10.91 13.92 34.34 3.82
2898 3215 5.791666 AGCTCCTAAAAACAGTACTACCAC 58.208 41.667 0.00 0.00 0.00 4.16
2904 3221 8.302438 TCACTTACTAGCTCCTAAAAACAGTAC 58.698 37.037 0.00 0.00 0.00 2.73
2905 3222 8.413309 TCACTTACTAGCTCCTAAAAACAGTA 57.587 34.615 0.00 0.00 0.00 2.74
2906 3223 7.299246 TCACTTACTAGCTCCTAAAAACAGT 57.701 36.000 0.00 0.00 0.00 3.55
2952 3269 8.030106 ACTAACTAGAGTCACAGCTTAATCAAC 58.970 37.037 0.00 0.00 0.00 3.18
2967 3284 5.712917 CACAAGGGAAGAGACTAACTAGAGT 59.287 44.000 0.00 0.00 0.00 3.24
2970 3289 4.382147 GCCACAAGGGAAGAGACTAACTAG 60.382 50.000 0.00 0.00 40.01 2.57
2973 3292 2.303311 AGCCACAAGGGAAGAGACTAAC 59.697 50.000 0.00 0.00 40.01 2.34
2995 3314 7.119699 CCTGAAATTTTGTAGAGCACAGACATA 59.880 37.037 0.00 0.00 38.72 2.29
2998 3317 5.239525 ACCTGAAATTTTGTAGAGCACAGAC 59.760 40.000 0.00 0.00 38.72 3.51
2999 3318 5.376625 ACCTGAAATTTTGTAGAGCACAGA 58.623 37.500 0.00 0.00 38.72 3.41
3007 3326 3.826157 TGGGCTGACCTGAAATTTTGTAG 59.174 43.478 0.00 0.00 41.11 2.74
3097 3416 2.301738 GGACAAGAGGGGGACTGGG 61.302 68.421 0.00 0.00 0.00 4.45
3101 3420 0.615850 CAAGAGGACAAGAGGGGGAC 59.384 60.000 0.00 0.00 0.00 4.46
3153 3473 6.102615 AGGCCATTCCAAAAGATAGGTATGTA 59.897 38.462 5.01 0.00 37.29 2.29
3203 3524 1.192534 GCATCGCTCTACGGTATTTGC 59.807 52.381 0.00 0.00 43.89 3.68
3204 3525 1.452025 CGCATCGCTCTACGGTATTTG 59.548 52.381 0.00 0.00 43.89 2.32
3205 3526 1.066605 ACGCATCGCTCTACGGTATTT 59.933 47.619 0.00 0.00 43.89 1.40
3437 3763 0.251922 AGAAACAGGTGGGCATGCAT 60.252 50.000 21.36 0.00 0.00 3.96
3668 4001 0.108329 AATTTCGATCGCAGGGACGT 60.108 50.000 11.09 0.00 0.00 4.34
3670 4003 2.418628 TCAAAATTTCGATCGCAGGGAC 59.581 45.455 11.09 0.00 0.00 4.46
3694 4030 1.571955 TGGCTGGCAGAAGAGACATA 58.428 50.000 20.86 0.00 0.00 2.29
3714 4050 7.036996 TCAGAAAATGAACATGCAAGTGTTA 57.963 32.000 5.69 0.00 42.08 2.41
3747 4083 2.644992 CCGGTGGCAAGTGCTTTC 59.355 61.111 2.85 0.00 41.70 2.62
3777 4114 3.108144 GTGGCAAATGATAACACGATGC 58.892 45.455 0.00 0.00 34.03 3.91
3781 4118 2.916716 GCAAGTGGCAAATGATAACACG 59.083 45.455 5.07 0.00 43.97 4.49
3843 4180 6.260493 CCCTTTGATGAAAATGCTTTGAAACA 59.740 34.615 0.00 0.00 0.00 2.83
3945 4295 8.049721 AGATAGATGTAAGTTAGCTGCCTTTTT 58.950 33.333 0.00 0.00 0.00 1.94
3960 4310 8.121185 AGGATCATGATCAGGAGATAGATGTAA 58.879 37.037 31.49 0.00 39.54 2.41
4023 4376 3.376546 GTCCTGCATTTTTGCAACCAAAA 59.623 39.130 0.00 0.00 46.21 2.44
4024 4377 2.941720 GTCCTGCATTTTTGCAACCAAA 59.058 40.909 0.00 0.00 44.88 3.28
4025 4378 2.559440 GTCCTGCATTTTTGCAACCAA 58.441 42.857 0.00 0.00 44.88 3.67
4026 4379 1.202627 GGTCCTGCATTTTTGCAACCA 60.203 47.619 14.06 0.00 44.88 3.67
4048 4401 1.153756 CCACCAGTTGCCCTCCTTT 59.846 57.895 0.00 0.00 0.00 3.11
4108 4461 1.135333 GCCAGGTACGAGAAGAGGAAG 59.865 57.143 0.00 0.00 0.00 3.46
4573 4936 8.147704 ACTTGAAAACAGAAAACCAAGAAGAAA 58.852 29.630 0.00 0.00 36.03 2.52
4584 4948 6.924060 TCGAACCAAAACTTGAAAACAGAAAA 59.076 30.769 0.00 0.00 0.00 2.29
4653 5027 3.119708 GCAGAGAACAAACCCACATGATC 60.120 47.826 0.00 0.00 0.00 2.92
4654 5028 2.821969 GCAGAGAACAAACCCACATGAT 59.178 45.455 0.00 0.00 0.00 2.45
4655 5029 2.229792 GCAGAGAACAAACCCACATGA 58.770 47.619 0.00 0.00 0.00 3.07
4656 5030 1.270550 GGCAGAGAACAAACCCACATG 59.729 52.381 0.00 0.00 0.00 3.21
4657 5031 1.145738 AGGCAGAGAACAAACCCACAT 59.854 47.619 0.00 0.00 0.00 3.21
4757 5131 9.135189 TGACATGGGAGAAATAAAATAATCCAG 57.865 33.333 0.00 0.00 0.00 3.86
4819 5236 4.832266 AGAATACAAAAACACATGCTGGGA 59.168 37.500 0.00 0.00 0.00 4.37
4833 5278 7.508977 ACTTTTCCCCAGAAATCAGAATACAAA 59.491 33.333 0.00 0.00 41.55 2.83
4873 5318 1.067565 TGCACGTCTTCCAAGAGCTAG 60.068 52.381 0.00 0.00 35.32 3.42
4952 5409 1.951209 TCAACTGGACCATGCTCCTA 58.049 50.000 8.53 0.00 0.00 2.94
4953 5410 1.064906 CATCAACTGGACCATGCTCCT 60.065 52.381 8.53 0.00 0.00 3.69
4954 5411 1.386533 CATCAACTGGACCATGCTCC 58.613 55.000 0.00 0.00 0.00 4.70
4965 5422 6.983307 GTCATATAGCCTATAGCCATCAACTG 59.017 42.308 0.00 0.00 45.47 3.16
4966 5423 6.669591 TGTCATATAGCCTATAGCCATCAACT 59.330 38.462 0.00 0.00 45.47 3.16
4967 5424 6.878317 TGTCATATAGCCTATAGCCATCAAC 58.122 40.000 0.00 0.00 45.47 3.18
4968 5425 7.681259 ATGTCATATAGCCTATAGCCATCAA 57.319 36.000 0.00 0.00 45.47 2.57
4969 5426 7.503549 CAATGTCATATAGCCTATAGCCATCA 58.496 38.462 0.00 0.00 45.47 3.07
4970 5427 6.426328 GCAATGTCATATAGCCTATAGCCATC 59.574 42.308 0.00 0.00 45.47 3.51
4971 5428 6.294473 GCAATGTCATATAGCCTATAGCCAT 58.706 40.000 0.00 0.00 45.47 4.40
4972 5429 5.396772 GGCAATGTCATATAGCCTATAGCCA 60.397 44.000 13.72 2.18 45.47 4.75
4973 5430 5.059833 GGCAATGTCATATAGCCTATAGCC 58.940 45.833 13.72 0.00 45.47 3.93
4974 5431 5.674525 TGGCAATGTCATATAGCCTATAGC 58.325 41.667 18.96 0.00 45.42 2.97
4975 5432 9.650539 GATATGGCAATGTCATATAGCCTATAG 57.349 37.037 18.99 0.00 40.36 1.31
4976 5433 9.158097 TGATATGGCAATGTCATATAGCCTATA 57.842 33.333 18.99 15.42 40.36 1.31
4977 5434 8.037723 TGATATGGCAATGTCATATAGCCTAT 57.962 34.615 18.99 14.73 40.36 2.57
4978 5435 7.436320 TGATATGGCAATGTCATATAGCCTA 57.564 36.000 18.99 3.05 40.36 3.93
4979 5436 6.317663 TGATATGGCAATGTCATATAGCCT 57.682 37.500 18.99 0.00 40.36 4.58
4980 5437 6.996879 AGATGATATGGCAATGTCATATAGCC 59.003 38.462 18.99 11.16 42.71 3.93
4981 5438 9.722184 ATAGATGATATGGCAATGTCATATAGC 57.278 33.333 18.99 11.68 42.71 2.97
4984 5441 9.722184 GCTATAGATGATATGGCAATGTCATAT 57.278 33.333 19.04 19.04 42.71 1.78
4985 5442 8.152898 GGCTATAGATGATATGGCAATGTCATA 58.847 37.037 12.89 10.17 42.71 2.15
4986 5443 6.996879 GGCTATAGATGATATGGCAATGTCAT 59.003 38.462 12.78 12.78 44.62 3.06
4987 5444 6.070078 TGGCTATAGATGATATGGCAATGTCA 60.070 38.462 2.64 2.64 38.18 3.58
4988 5445 6.351711 TGGCTATAGATGATATGGCAATGTC 58.648 40.000 3.21 0.00 33.77 3.06
4989 5446 6.317663 TGGCTATAGATGATATGGCAATGT 57.682 37.500 3.21 0.00 33.77 2.71
4990 5447 6.039047 GGTTGGCTATAGATGATATGGCAATG 59.961 42.308 3.21 0.00 36.76 2.82
4991 5448 6.069206 AGGTTGGCTATAGATGATATGGCAAT 60.069 38.462 3.21 0.00 36.76 3.56
4992 5449 5.251468 AGGTTGGCTATAGATGATATGGCAA 59.749 40.000 3.21 0.00 34.43 4.52
4993 5450 4.784838 AGGTTGGCTATAGATGATATGGCA 59.215 41.667 3.21 0.00 33.77 4.92
4994 5451 5.365021 AGGTTGGCTATAGATGATATGGC 57.635 43.478 3.21 0.00 0.00 4.40
4995 5452 6.715280 ACAAGGTTGGCTATAGATGATATGG 58.285 40.000 3.21 0.00 0.00 2.74
4996 5453 8.535335 ACTACAAGGTTGGCTATAGATGATATG 58.465 37.037 3.21 0.00 0.00 1.78
4997 5454 8.671987 ACTACAAGGTTGGCTATAGATGATAT 57.328 34.615 3.21 0.00 0.00 1.63
4998 5455 7.950684 AGACTACAAGGTTGGCTATAGATGATA 59.049 37.037 3.21 0.00 0.00 2.15
4999 5456 6.784969 AGACTACAAGGTTGGCTATAGATGAT 59.215 38.462 3.21 0.00 0.00 2.45
5000 5457 6.136857 AGACTACAAGGTTGGCTATAGATGA 58.863 40.000 3.21 0.00 0.00 2.92
5001 5458 6.412362 AGACTACAAGGTTGGCTATAGATG 57.588 41.667 3.21 0.00 0.00 2.90
5002 5459 7.439108 AAAGACTACAAGGTTGGCTATAGAT 57.561 36.000 3.21 0.00 0.00 1.98
5003 5460 6.869206 AAAGACTACAAGGTTGGCTATAGA 57.131 37.500 3.21 0.00 0.00 1.98
5004 5461 9.614792 ATTTAAAGACTACAAGGTTGGCTATAG 57.385 33.333 0.00 0.00 0.00 1.31
5008 5465 9.969001 TTATATTTAAAGACTACAAGGTTGGCT 57.031 29.630 0.00 0.00 0.00 4.75
5036 5493 9.415008 TGAAGTAGCTCATCTTTAGATCTTACT 57.585 33.333 0.00 0.00 31.21 2.24
5048 5505 9.829507 GCCATATATTAATGAAGTAGCTCATCT 57.170 33.333 0.00 0.00 34.90 2.90
5049 5506 9.050601 GGCCATATATTAATGAAGTAGCTCATC 57.949 37.037 0.00 0.00 34.90 2.92
5050 5507 7.995488 GGGCCATATATTAATGAAGTAGCTCAT 59.005 37.037 4.39 0.00 37.66 2.90
5051 5508 7.037658 TGGGCCATATATTAATGAAGTAGCTCA 60.038 37.037 0.00 0.00 0.00 4.26
5052 5509 7.338710 TGGGCCATATATTAATGAAGTAGCTC 58.661 38.462 0.00 0.00 0.00 4.09
5053 5510 7.270832 TGGGCCATATATTAATGAAGTAGCT 57.729 36.000 0.00 0.00 0.00 3.32
5054 5511 7.995488 AGATGGGCCATATATTAATGAAGTAGC 59.005 37.037 21.26 0.00 0.00 3.58
5055 5512 9.553064 GAGATGGGCCATATATTAATGAAGTAG 57.447 37.037 21.26 0.00 0.00 2.57
5056 5513 8.494433 GGAGATGGGCCATATATTAATGAAGTA 58.506 37.037 21.26 0.00 0.00 2.24
5057 5514 7.349598 GGAGATGGGCCATATATTAATGAAGT 58.650 38.462 21.26 0.00 0.00 3.01
5058 5515 6.774656 GGGAGATGGGCCATATATTAATGAAG 59.225 42.308 21.26 0.00 0.00 3.02
5059 5516 6.219354 TGGGAGATGGGCCATATATTAATGAA 59.781 38.462 21.26 0.00 0.00 2.57
5060 5517 5.735624 TGGGAGATGGGCCATATATTAATGA 59.264 40.000 21.26 0.00 0.00 2.57
5061 5518 5.829924 GTGGGAGATGGGCCATATATTAATG 59.170 44.000 21.26 0.00 0.00 1.90
5062 5519 5.738108 AGTGGGAGATGGGCCATATATTAAT 59.262 40.000 21.26 2.00 0.00 1.40
5063 5520 5.108026 AGTGGGAGATGGGCCATATATTAA 58.892 41.667 21.26 0.78 0.00 1.40
5064 5521 4.709944 AGTGGGAGATGGGCCATATATTA 58.290 43.478 21.26 2.66 0.00 0.98
5065 5522 3.525199 GAGTGGGAGATGGGCCATATATT 59.475 47.826 21.26 5.46 0.00 1.28
5066 5523 3.118531 GAGTGGGAGATGGGCCATATAT 58.881 50.000 21.26 8.66 0.00 0.86
5067 5524 2.114323 AGAGTGGGAGATGGGCCATATA 59.886 50.000 21.26 0.00 0.00 0.86
5068 5525 1.132267 AGAGTGGGAGATGGGCCATAT 60.132 52.381 21.26 17.97 0.00 1.78
5069 5526 0.268869 AGAGTGGGAGATGGGCCATA 59.731 55.000 21.26 0.00 0.00 2.74
5070 5527 0.625683 AAGAGTGGGAGATGGGCCAT 60.626 55.000 21.39 21.39 0.00 4.40
5071 5528 0.044092 TAAGAGTGGGAGATGGGCCA 59.956 55.000 9.61 9.61 0.00 5.36
5072 5529 1.439543 ATAAGAGTGGGAGATGGGCC 58.560 55.000 0.00 0.00 0.00 5.80
5073 5530 5.026790 ACTATATAAGAGTGGGAGATGGGC 58.973 45.833 0.00 0.00 0.00 5.36
5074 5531 5.105146 GCACTATATAAGAGTGGGAGATGGG 60.105 48.000 16.04 0.00 43.78 4.00
5075 5532 5.105146 GGCACTATATAAGAGTGGGAGATGG 60.105 48.000 16.04 0.00 43.78 3.51
5076 5533 5.719085 AGGCACTATATAAGAGTGGGAGATG 59.281 44.000 16.04 0.00 43.78 2.90
5077 5534 5.909760 AGGCACTATATAAGAGTGGGAGAT 58.090 41.667 16.04 0.00 43.78 2.75
5078 5535 5.340891 AGGCACTATATAAGAGTGGGAGA 57.659 43.478 16.04 0.00 43.78 3.71
5079 5536 6.948886 TCTTAGGCACTATATAAGAGTGGGAG 59.051 42.308 16.04 0.00 42.38 4.30
5080 5537 6.860034 TCTTAGGCACTATATAAGAGTGGGA 58.140 40.000 16.04 0.00 42.38 4.37
5081 5538 7.164230 CTCTTAGGCACTATATAAGAGTGGG 57.836 44.000 16.04 0.00 43.74 4.61
5106 5563 2.664185 AGTCAGCTGCAGCACGTG 60.664 61.111 38.24 27.61 45.16 4.49
5107 5564 2.356793 GAGTCAGCTGCAGCACGT 60.357 61.111 38.24 20.73 45.16 4.49
5108 5565 0.389037 TAAGAGTCAGCTGCAGCACG 60.389 55.000 38.24 28.24 45.16 5.34
5109 5566 2.021355 ATAAGAGTCAGCTGCAGCAC 57.979 50.000 38.24 28.18 45.16 4.40
5110 5567 2.235650 AGAATAAGAGTCAGCTGCAGCA 59.764 45.455 38.24 18.36 45.16 4.41
5111 5568 2.608546 CAGAATAAGAGTCAGCTGCAGC 59.391 50.000 31.53 31.53 42.49 5.25
5112 5569 3.859443 ACAGAATAAGAGTCAGCTGCAG 58.141 45.455 10.11 10.11 0.00 4.41
5113 5570 3.969287 ACAGAATAAGAGTCAGCTGCA 57.031 42.857 9.47 0.00 0.00 4.41
5114 5571 3.801594 GCTACAGAATAAGAGTCAGCTGC 59.198 47.826 9.47 4.26 0.00 5.25
5115 5572 4.367450 GGCTACAGAATAAGAGTCAGCTG 58.633 47.826 7.63 7.63 0.00 4.24
5116 5573 3.386402 GGGCTACAGAATAAGAGTCAGCT 59.614 47.826 0.00 0.00 0.00 4.24
5117 5574 3.723260 GGGCTACAGAATAAGAGTCAGC 58.277 50.000 0.00 0.00 0.00 4.26
5118 5575 3.797184 GCGGGCTACAGAATAAGAGTCAG 60.797 52.174 0.00 0.00 0.00 3.51
5119 5576 2.100916 GCGGGCTACAGAATAAGAGTCA 59.899 50.000 0.00 0.00 0.00 3.41
5120 5577 2.362717 AGCGGGCTACAGAATAAGAGTC 59.637 50.000 0.00 0.00 0.00 3.36
5121 5578 2.362717 GAGCGGGCTACAGAATAAGAGT 59.637 50.000 0.00 0.00 0.00 3.24
5122 5579 2.288518 GGAGCGGGCTACAGAATAAGAG 60.289 54.545 0.00 0.00 0.00 2.85
5123 5580 1.687123 GGAGCGGGCTACAGAATAAGA 59.313 52.381 0.00 0.00 0.00 2.10
5124 5581 1.689273 AGGAGCGGGCTACAGAATAAG 59.311 52.381 5.56 0.00 0.00 1.73
5125 5582 1.789523 AGGAGCGGGCTACAGAATAA 58.210 50.000 5.56 0.00 0.00 1.40
5126 5583 1.789523 AAGGAGCGGGCTACAGAATA 58.210 50.000 5.56 0.00 0.00 1.75
5127 5584 1.789523 TAAGGAGCGGGCTACAGAAT 58.210 50.000 5.56 0.00 0.00 2.40
5128 5585 1.687123 GATAAGGAGCGGGCTACAGAA 59.313 52.381 5.56 0.00 0.00 3.02
5129 5586 1.133450 AGATAAGGAGCGGGCTACAGA 60.133 52.381 5.56 0.00 0.00 3.41
5130 5587 1.271102 GAGATAAGGAGCGGGCTACAG 59.729 57.143 5.56 0.00 0.00 2.74
5131 5588 1.133450 AGAGATAAGGAGCGGGCTACA 60.133 52.381 5.56 0.00 0.00 2.74
5132 5589 1.542472 GAGAGATAAGGAGCGGGCTAC 59.458 57.143 0.00 0.00 0.00 3.58
5133 5590 1.425831 AGAGAGATAAGGAGCGGGCTA 59.574 52.381 0.00 0.00 0.00 3.93
5134 5591 0.187361 AGAGAGATAAGGAGCGGGCT 59.813 55.000 0.00 0.00 0.00 5.19
5135 5592 0.601057 GAGAGAGATAAGGAGCGGGC 59.399 60.000 0.00 0.00 0.00 6.13
5136 5593 1.203001 AGGAGAGAGATAAGGAGCGGG 60.203 57.143 0.00 0.00 0.00 6.13
5137 5594 2.159382 GAGGAGAGAGATAAGGAGCGG 58.841 57.143 0.00 0.00 0.00 5.52
5138 5595 3.140325 AGAGGAGAGAGATAAGGAGCG 57.860 52.381 0.00 0.00 0.00 5.03
5139 5596 4.729868 AGAAGAGGAGAGAGATAAGGAGC 58.270 47.826 0.00 0.00 0.00 4.70
5140 5597 6.192970 AGAGAAGAGGAGAGAGATAAGGAG 57.807 45.833 0.00 0.00 0.00 3.69
5141 5598 6.410388 GGAAGAGAAGAGGAGAGAGATAAGGA 60.410 46.154 0.00 0.00 0.00 3.36
5142 5599 5.770162 GGAAGAGAAGAGGAGAGAGATAAGG 59.230 48.000 0.00 0.00 0.00 2.69
5143 5600 5.770162 GGGAAGAGAAGAGGAGAGAGATAAG 59.230 48.000 0.00 0.00 0.00 1.73
5144 5601 5.435041 AGGGAAGAGAAGAGGAGAGAGATAA 59.565 44.000 0.00 0.00 0.00 1.75
5145 5602 4.981647 AGGGAAGAGAAGAGGAGAGAGATA 59.018 45.833 0.00 0.00 0.00 1.98
5146 5603 3.793827 AGGGAAGAGAAGAGGAGAGAGAT 59.206 47.826 0.00 0.00 0.00 2.75
5147 5604 3.197983 AGGGAAGAGAAGAGGAGAGAGA 58.802 50.000 0.00 0.00 0.00 3.10
5148 5605 3.555966 GAGGGAAGAGAAGAGGAGAGAG 58.444 54.545 0.00 0.00 0.00 3.20
5149 5606 2.243736 GGAGGGAAGAGAAGAGGAGAGA 59.756 54.545 0.00 0.00 0.00 3.10
5150 5607 2.024464 TGGAGGGAAGAGAAGAGGAGAG 60.024 54.545 0.00 0.00 0.00 3.20
5151 5608 2.003830 TGGAGGGAAGAGAAGAGGAGA 58.996 52.381 0.00 0.00 0.00 3.71
5152 5609 2.541233 TGGAGGGAAGAGAAGAGGAG 57.459 55.000 0.00 0.00 0.00 3.69
5153 5610 2.045047 ACATGGAGGGAAGAGAAGAGGA 59.955 50.000 0.00 0.00 0.00 3.71
5154 5611 2.433970 GACATGGAGGGAAGAGAAGAGG 59.566 54.545 0.00 0.00 0.00 3.69
5155 5612 3.102972 TGACATGGAGGGAAGAGAAGAG 58.897 50.000 0.00 0.00 0.00 2.85
5156 5613 3.102972 CTGACATGGAGGGAAGAGAAGA 58.897 50.000 0.00 0.00 0.00 2.87
5157 5614 2.419851 GCTGACATGGAGGGAAGAGAAG 60.420 54.545 0.00 0.00 0.00 2.85
5158 5615 1.556911 GCTGACATGGAGGGAAGAGAA 59.443 52.381 0.00 0.00 0.00 2.87
5159 5616 1.198713 GCTGACATGGAGGGAAGAGA 58.801 55.000 0.00 0.00 0.00 3.10
5160 5617 0.907486 TGCTGACATGGAGGGAAGAG 59.093 55.000 0.00 0.00 0.00 2.85
5161 5618 1.361204 TTGCTGACATGGAGGGAAGA 58.639 50.000 0.00 0.00 0.00 2.87
5162 5619 2.205022 TTTGCTGACATGGAGGGAAG 57.795 50.000 0.00 0.00 0.00 3.46
5163 5620 2.673775 TTTTGCTGACATGGAGGGAA 57.326 45.000 0.00 0.00 0.00 3.97
5164 5621 2.108075 TCTTTTTGCTGACATGGAGGGA 59.892 45.455 0.00 0.00 0.00 4.20
5165 5622 2.517959 TCTTTTTGCTGACATGGAGGG 58.482 47.619 0.00 0.00 0.00 4.30
5166 5623 5.902613 TTATCTTTTTGCTGACATGGAGG 57.097 39.130 0.00 0.00 0.00 4.30
5185 5642 9.813826 AGCAGGCTGTAAGGATTAAAATATTAT 57.186 29.630 17.16 0.00 28.70 1.28
5186 5643 9.640952 AAGCAGGCTGTAAGGATTAAAATATTA 57.359 29.630 17.16 0.00 28.70 0.98
5187 5644 8.539117 AAGCAGGCTGTAAGGATTAAAATATT 57.461 30.769 17.16 0.00 28.70 1.28
5188 5645 9.067986 GTAAGCAGGCTGTAAGGATTAAAATAT 57.932 33.333 17.16 0.00 28.70 1.28
5189 5646 8.050325 TGTAAGCAGGCTGTAAGGATTAAAATA 58.950 33.333 17.16 0.00 28.70 1.40
5190 5647 6.889722 TGTAAGCAGGCTGTAAGGATTAAAAT 59.110 34.615 17.16 0.00 28.70 1.82
5191 5648 6.242396 TGTAAGCAGGCTGTAAGGATTAAAA 58.758 36.000 17.16 0.00 28.70 1.52
5192 5649 5.811190 TGTAAGCAGGCTGTAAGGATTAAA 58.189 37.500 17.16 0.00 28.70 1.52
5193 5650 5.429681 TGTAAGCAGGCTGTAAGGATTAA 57.570 39.130 17.16 0.00 28.70 1.40
5194 5651 5.630415 ATGTAAGCAGGCTGTAAGGATTA 57.370 39.130 17.16 3.77 0.00 1.75
5195 5652 4.510167 ATGTAAGCAGGCTGTAAGGATT 57.490 40.909 17.16 4.68 0.00 3.01
5196 5653 5.615289 CTTATGTAAGCAGGCTGTAAGGAT 58.385 41.667 17.16 6.09 0.00 3.24
5197 5654 5.023533 CTTATGTAAGCAGGCTGTAAGGA 57.976 43.478 17.16 0.00 0.00 3.36
5219 5676 9.439537 GCACTTTTTAGAGCAAGTATAATAAGC 57.560 33.333 0.00 0.00 31.78 3.09
5222 5679 8.612619 GCTGCACTTTTTAGAGCAAGTATAATA 58.387 33.333 0.00 0.00 35.19 0.98
5223 5680 7.121168 TGCTGCACTTTTTAGAGCAAGTATAAT 59.879 33.333 0.00 0.00 36.74 1.28
5224 5681 6.429692 TGCTGCACTTTTTAGAGCAAGTATAA 59.570 34.615 0.00 0.00 36.74 0.98
5225 5682 5.937540 TGCTGCACTTTTTAGAGCAAGTATA 59.062 36.000 0.00 0.00 36.74 1.47
5226 5683 4.761739 TGCTGCACTTTTTAGAGCAAGTAT 59.238 37.500 0.00 0.00 36.74 2.12
5227 5684 4.133820 TGCTGCACTTTTTAGAGCAAGTA 58.866 39.130 0.00 0.00 36.74 2.24
5228 5685 2.951642 TGCTGCACTTTTTAGAGCAAGT 59.048 40.909 0.00 0.00 36.74 3.16
5229 5686 3.562505 CTGCTGCACTTTTTAGAGCAAG 58.437 45.455 0.00 0.00 39.10 4.01
5230 5687 2.294233 CCTGCTGCACTTTTTAGAGCAA 59.706 45.455 0.00 0.00 39.10 3.91
5231 5688 1.881973 CCTGCTGCACTTTTTAGAGCA 59.118 47.619 0.00 0.00 37.33 4.26
5232 5689 2.154462 TCCTGCTGCACTTTTTAGAGC 58.846 47.619 0.00 0.00 0.00 4.09
5233 5690 5.065731 CCTATTCCTGCTGCACTTTTTAGAG 59.934 44.000 0.00 0.00 0.00 2.43
5234 5691 4.943705 CCTATTCCTGCTGCACTTTTTAGA 59.056 41.667 0.00 0.00 0.00 2.10
5235 5692 4.943705 TCCTATTCCTGCTGCACTTTTTAG 59.056 41.667 0.00 0.00 0.00 1.85
5272 5729 6.114187 TGTCACTCACTCAACCTTATTCAT 57.886 37.500 0.00 0.00 0.00 2.57
5273 5730 5.511373 CCTGTCACTCACTCAACCTTATTCA 60.511 44.000 0.00 0.00 0.00 2.57
5274 5731 4.932200 CCTGTCACTCACTCAACCTTATTC 59.068 45.833 0.00 0.00 0.00 1.75
5275 5732 4.263068 CCCTGTCACTCACTCAACCTTATT 60.263 45.833 0.00 0.00 0.00 1.40
5276 5733 3.261897 CCCTGTCACTCACTCAACCTTAT 59.738 47.826 0.00 0.00 0.00 1.73
5278 5735 1.417890 CCCTGTCACTCACTCAACCTT 59.582 52.381 0.00 0.00 0.00 3.50
5282 5739 0.681733 GCTCCCTGTCACTCACTCAA 59.318 55.000 0.00 0.00 0.00 3.02
5324 5782 0.973632 ATGTGAACTCCACCTGCGTA 59.026 50.000 0.00 0.00 45.09 4.42
5345 5803 0.719465 AATACGCAAACTCGCTTCCG 59.281 50.000 0.00 0.00 0.00 4.30
5346 5804 1.202031 CCAATACGCAAACTCGCTTCC 60.202 52.381 0.00 0.00 0.00 3.46
5347 5805 1.790481 GCCAATACGCAAACTCGCTTC 60.790 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.