AutoCloner

Multiple sequence alignment - TraesCS2D01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G202300	chr2D	100.000	3023	0	0	1	3023	154290888	154293910	0.000000e+00	5583.0
1	TraesCS2D01G202300	chr2D	87.602	613	53	19	1	602	51406625	51407225	0.000000e+00	689.0
2	TraesCS2D01G202300	chr2A	93.267	2317	114	18	707	3021	146725814	146723538	0.000000e+00	3376.0
3	TraesCS2D01G202300	chr2B	93.559	1211	57	10	837	2041	211698992	211700187	0.000000e+00	1784.0
4	TraesCS2D01G202300	chr2B	85.027	561	56	20	1	550	73970141	73970684	2.050000e-151	545.0
5	TraesCS2D01G202300	chr2B	80.660	667	84	28	67	711	799858814	799859457	2.730000e-130	475.0
6	TraesCS2D01G202300	chr2B	83.784	333	33	16	1	323	799858789	799859110	2.280000e-76	296.0
7	TraesCS2D01G202300	chr2B	94.393	107	6	0	690	796	211698885	211698991	6.700000e-37	165.0
8	TraesCS2D01G202300	chr7B	86.712	730	66	21	1	712	329365948	329365232	0.000000e+00	782.0
9	TraesCS2D01G202300	chr3D	89.672	610	33	10	1	602	582509110	582509697	0.000000e+00	750.0
10	TraesCS2D01G202300	chr3D	91.057	369	26	6	1	365	582508822	582509187	2.710000e-135	492.0
11	TraesCS2D01G202300	chr3D	78.857	350	46	24	45	380	398278275	398277940	8.490000e-51	211.0
12	TraesCS2D01G202300	chr5D	85.992	721	63	24	1	708	3933714	3934409	0.000000e+00	737.0
13	TraesCS2D01G202300	chr1B	83.156	754	68	22	5	708	596364194	596363450	4.250000e-178	634.0
14	TraesCS2D01G202300	chr1B	84.384	333	30	17	1	323	581701424	581701744	1.050000e-79	307.0
15	TraesCS2D01G202300	chr6B	80.330	727	93	32	6	708	46268862	46269562	3.480000e-139	505.0
16	TraesCS2D01G202300	chr6B	87.200	125	8	2	592	708	46269747	46269871	5.260000e-28	135.0
17	TraesCS2D01G202300	chr3B	84.894	331	32	14	1	323	154365916	154366236	4.860000e-83	318.0
18	TraesCS2D01G202300	chr3B	93.443	61	4	0	652	712	506732500	506732560	1.150000e-14	91.6
19	TraesCS2D01G202300	chr5B	82.119	151	18	4	557	698	586185890	586185740	1.470000e-23	121.0
20	TraesCS2D01G202300	chr5B	98.246	57	1	0	652	708	275702184	275702128	1.920000e-17	100.0
21	TraesCS2D01G202300	chr5B	96.491	57	2	0	652	708	288316754	288316698	8.920000e-16	95.3
22	TraesCS2D01G202300	chr1D	83.824	136	9	6	590	715	317110083	317109951	1.900000e-22	117.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G202300	chr2D	154290888	154293910	3022	False	5583.0	5583	100.0000	1	3023	1	chr2D.!!$F2	3022
1	TraesCS2D01G202300	chr2D	51406625	51407225	600	False	689.0	689	87.6020	1	602	1	chr2D.!!$F1	601
2	TraesCS2D01G202300	chr2A	146723538	146725814	2276	True	3376.0	3376	93.2670	707	3021	1	chr2A.!!$R1	2314
3	TraesCS2D01G202300	chr2B	211698885	211700187	1302	False	974.5	1784	93.9760	690	2041	2	chr2B.!!$F2	1351
4	TraesCS2D01G202300	chr2B	73970141	73970684	543	False	545.0	545	85.0270	1	550	1	chr2B.!!$F1	549
5	TraesCS2D01G202300	chr2B	799858789	799859457	668	False	385.5	475	82.2220	1	711	2	chr2B.!!$F3	710
6	TraesCS2D01G202300	chr7B	329365232	329365948	716	True	782.0	782	86.7120	1	712	1	chr7B.!!$R1	711
7	TraesCS2D01G202300	chr3D	582508822	582509697	875	False	621.0	750	90.3645	1	602	2	chr3D.!!$F1	601
8	TraesCS2D01G202300	chr5D	3933714	3934409	695	False	737.0	737	85.9920	1	708	1	chr5D.!!$F1	707
9	TraesCS2D01G202300	chr1B	596363450	596364194	744	True	634.0	634	83.1560	5	708	1	chr1B.!!$R1	703
10	TraesCS2D01G202300	chr6B	46268862	46269871	1009	False	320.0	505	83.7650	6	708	2	chr6B.!!$F1	702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
978	1709	0.603707	CTTCTGCACGCTTTCCCTGA	60.604	55.0	0.0	0.0	0.0	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2059	2801	0.107703	TGTCCGCTTTATGGAGCAGG	60.108	55.0	3.51	5.3	42.83	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	65	9.398170	GAATTTGAAGAAAGTTCATCGAATCAA	57.602	29.630	10.62	0.00	37.78	2.57
45	66	9.748708	AATTTGAAGAAAGTTCATCGAATCAAA	57.251	25.926	10.62	0.00	37.78	2.69
95	137	9.741647	AAAGTTCATTGAATCTGAGAAAAGTTC	57.258	29.630	1.78	0.00	0.00	3.01
96	138	8.455903	AGTTCATTGAATCTGAGAAAAGTTCA	57.544	30.769	1.78	0.00	0.00	3.18
97	139	9.075678	AGTTCATTGAATCTGAGAAAAGTTCAT	57.924	29.630	1.78	0.00	0.00	2.57
98	140	9.339492	GTTCATTGAATCTGAGAAAAGTTCATC	57.661	33.333	1.78	0.00	0.00	2.92
99	141	7.745972	TCATTGAATCTGAGAAAAGTTCATCG	58.254	34.615	0.00	0.00	0.00	3.84
100	142	7.603784	TCATTGAATCTGAGAAAAGTTCATCGA	59.396	33.333	0.00	0.00	0.00	3.59
101	143	7.728847	TTGAATCTGAGAAAAGTTCATCGAA	57.271	32.000	0.00	0.00	0.00	3.71
102	144	7.912056	TGAATCTGAGAAAAGTTCATCGAAT	57.088	32.000	0.00	0.00	0.00	3.34
103	145	8.327941	TGAATCTGAGAAAAGTTCATCGAATT	57.672	30.769	0.00	0.00	0.00	2.17
104	146	8.446273	TGAATCTGAGAAAAGTTCATCGAATTC	58.554	33.333	0.00	0.00	0.00	2.17
105	147	6.395089	TCTGAGAAAAGTTCATCGAATTCG	57.605	37.500	21.78	21.78	41.45	3.34
218	592	6.869315	TCACCGATTTGAAAACAGTTCATA	57.131	33.333	0.00	0.00	0.00	2.15
529	935	1.473677	CCACATGCGATTGATTGGTGT	59.526	47.619	0.00	0.00	0.00	4.16
531	937	1.135315	ACATGCGATTGATTGGTGTGC	60.135	47.619	0.00	0.00	0.00	4.57
566	975	7.361286	CCAGTATGTAAAGAGAAAGGTTTCTGC	60.361	40.741	9.71	2.56	46.84	4.26
604	1316	3.543852	GCGCAATAATTTTTGGCGGATTG	60.544	43.478	18.71	7.76	31.44	2.67
680	1411	5.625721	CGTTTGCAAAATACACATTAACGGA	59.374	36.000	14.67	0.00	31.83	4.69
687	1418	0.672401	ACACATTAACGGACGCCTGG	60.672	55.000	0.00	0.00	0.00	4.45
765	1496	1.214589	CAGGCCTCTTGCATGCAAC	59.785	57.895	28.80	18.40	45.75	4.17
827	1558	2.029918	GCCTTTCTGTTTCGCATTTCCT	60.030	45.455	0.00	0.00	0.00	3.36
976	1707	1.302832	CCTTCTGCACGCTTTCCCT	60.303	57.895	0.00	0.00	0.00	4.20
977	1708	1.580845	CCTTCTGCACGCTTTCCCTG	61.581	60.000	0.00	0.00	0.00	4.45
978	1709	0.603707	CTTCTGCACGCTTTCCCTGA	60.604	55.000	0.00	0.00	0.00	3.86
979	1710	0.603707	TTCTGCACGCTTTCCCTGAG	60.604	55.000	0.00	0.00	0.00	3.35
980	1711	2.032528	TGCACGCTTTCCCTGAGG	59.967	61.111	0.00	0.00	0.00	3.86
981	1712	2.347490	GCACGCTTTCCCTGAGGA	59.653	61.111	0.00	0.00	41.88	3.71
1033	1764	0.250381	TCCCTTGCGCCGTAAGAAAA	60.250	50.000	16.69	0.00	43.02	2.29
1038	1769	1.296056	TGCGCCGTAAGAAAAGCCTC	61.296	55.000	4.18	0.00	43.02	4.70
1059	1790	1.727723	GAGATCATCGCCTCGTCGC	60.728	63.158	0.00	0.00	0.00	5.19
1070	1801	4.470170	TCGTCGCCGATCGTGGTG	62.470	66.667	15.09	6.48	38.40	4.17
1073	1804	3.060000	TCGCCGATCGTGGTGTCT	61.060	61.111	15.09	0.00	40.48	3.41
1196	1927	4.129737	AGGACGACGATGCCCACG	62.130	66.667	0.00	0.00	0.00	4.94
1199	1930	3.047718	GACGACGATGCCCACGAGA	62.048	63.158	0.00	0.00	34.70	4.04
1200	1931	2.278206	CGACGATGCCCACGAGAG	60.278	66.667	0.00	0.00	34.70	3.20
1201	1932	2.583593	GACGATGCCCACGAGAGC	60.584	66.667	0.00	0.00	34.70	4.09
1202	1933	4.498520	ACGATGCCCACGAGAGCG	62.499	66.667	0.00	0.00	44.79	5.03
1203	1934	4.193334	CGATGCCCACGAGAGCGA	62.193	66.667	0.00	0.00	41.64	4.93
1204	1935	2.419198	GATGCCCACGAGAGCGAT	59.581	61.111	0.00	0.00	41.64	4.58
1342	2073	0.732571	CTGACTCTGAGAGCGAGGAC	59.267	60.000	12.44	0.00	32.04	3.85
1435	2166	1.808945	GTGGTTGTTGCAGATCAGGAG	59.191	52.381	0.00	0.00	0.00	3.69
1662	2393	2.253603	ACGCGACGGTACAGAATAAAC	58.746	47.619	15.93	0.00	0.00	2.01
1922	2661	5.728507	GCAAATTCGTCGACTTGATAGAAAC	59.271	40.000	16.78	0.98	32.45	2.78
1963	2702	2.812011	GTTCGGTCTGTATTTTGGTGCT	59.188	45.455	0.00	0.00	0.00	4.40
1964	2703	3.134574	TCGGTCTGTATTTTGGTGCTT	57.865	42.857	0.00	0.00	0.00	3.91
1965	2704	4.274602	TCGGTCTGTATTTTGGTGCTTA	57.725	40.909	0.00	0.00	0.00	3.09
2059	2801	4.344237	CCAAGGGCATCTCCAACC	57.656	61.111	0.00	0.00	36.21	3.77
2063	2805	2.440980	GGGCATCTCCAACCCTGC	60.441	66.667	0.00	0.00	40.75	4.85
2066	2808	1.452833	GCATCTCCAACCCTGCTCC	60.453	63.158	0.00	0.00	0.00	4.70
2073	2815	1.106285	CCAACCCTGCTCCATAAAGC	58.894	55.000	0.00	0.00	42.82	3.51
2090	2832	6.073222	CCATAAAGCGGACACTGTATTTATCC	60.073	42.308	0.00	0.00	0.00	2.59
2099	2841	3.807622	CACTGTATTTATCCGCGGACAAT	59.192	43.478	33.75	30.35	0.00	2.71
2100	2842	3.807622	ACTGTATTTATCCGCGGACAATG	59.192	43.478	33.75	20.10	0.00	2.82
2104	2846	5.636121	TGTATTTATCCGCGGACAATGATAC	59.364	40.000	33.75	27.77	0.00	2.24
2111	2853	1.599542	GCGGACAATGATACAGAAGCC	59.400	52.381	0.00	0.00	0.00	4.35
2125	2867	0.606673	GAAGCCGGCTATCCAATCCC	60.607	60.000	33.07	6.67	0.00	3.85
2129	2871	0.179029	CCGGCTATCCAATCCCGTTT	60.179	55.000	0.00	0.00	39.12	3.60
2131	2873	1.745827	CGGCTATCCAATCCCGTTTGT	60.746	52.381	0.00	0.00	36.18	2.83
2135	2877	4.694037	GGCTATCCAATCCCGTTTGTATAC	59.306	45.833	0.00	0.00	0.00	1.47
2160	2902	5.947228	TTCGAATGAGATTTGAGCAAACT	57.053	34.783	0.00	0.00	34.33	2.66
2161	2903	7.433708	TTTCGAATGAGATTTGAGCAAACTA	57.566	32.000	0.00	0.00	34.33	2.24
2180	2922	9.615779	GCAAACTAGACGACTTTTATATAAACG	57.384	33.333	7.43	10.48	0.00	3.60
2256	2998	5.776173	TTAAAAAGCTTTCGGATCCAACA	57.224	34.783	13.10	0.00	0.00	3.33
2271	3013	8.866093	TCGGATCCAACATAGTATAAATCTTCA	58.134	33.333	13.41	0.00	0.00	3.02
2277	3019	7.411912	CCAACATAGTATAAATCTTCATCGGCG	60.412	40.741	0.00	0.00	0.00	6.46
2288	3030	4.814294	ATCGGCGCCGTCCTTCAC	62.814	66.667	44.16	6.58	40.74	3.18
2321	3063	1.141881	CTTCCGTGTCCATCTCCGG	59.858	63.158	0.00	0.00	41.75	5.14
2392	3134	0.733729	CTCCCACGTCCTACTCTTCG	59.266	60.000	0.00	0.00	0.00	3.79
2441	3183	1.519455	GAGGCCAAGTCGATGACCG	60.519	63.158	5.01	0.00	40.25	4.79
2475	3217	0.586802	GTGTTTCCGTCCTTGAGCAC	59.413	55.000	0.00	0.00	0.00	4.40
2479	3221	4.680237	CCGTCCTTGAGCACCGCA	62.680	66.667	0.00	0.00	0.00	5.69
2536	3278	3.782244	GCACGCTGCTCCTCAACG	61.782	66.667	0.00	0.00	40.96	4.10
2581	3323	0.883833	CCTTCATGGCTTTCGTGCTT	59.116	50.000	0.00	0.00	32.54	3.91
2585	3327	0.592637	CATGGCTTTCGTGCTTGTGA	59.407	50.000	0.00	0.00	0.00	3.58
2601	3343	5.181811	TGCTTGTGAACTCACCATAGATTTG	59.818	40.000	7.37	0.00	45.88	2.32
2606	3348	1.837439	ACTCACCATAGATTTGGCCGA	59.163	47.619	0.00	0.00	40.68	5.54
2713	3455	4.147449	CGCTCCTCCGCCATGACA	62.147	66.667	0.00	0.00	0.00	3.58
2785	3527	1.456705	AGGAAGGGGCTCTAGCTCG	60.457	63.158	1.39	0.00	44.07	5.03
2791	3533	2.716864	GGCTCTAGCTCGTCGTCC	59.283	66.667	1.39	0.00	41.70	4.79
2821	3563	1.211969	CATCGTCGGGTTGTCGTCT	59.788	57.895	0.00	0.00	0.00	4.18
2870	3612	3.733337	CCTACCTCTATTCACCATGCAC	58.267	50.000	0.00	0.00	0.00	4.57
2884	3626	2.904866	GCACAACGACCCTGGCAA	60.905	61.111	0.00	0.00	0.00	4.52
2942	3684	0.248825	CGAGAGGCTCTTCCACATCG	60.249	60.000	19.80	11.89	37.29	3.84
2949	3691	1.403814	CTCTTCCACATCGCCCTAGA	58.596	55.000	0.00	0.00	0.00	2.43
2993	3735	1.916181	TGGAAGGAGGAGGATTGGAAC	59.084	52.381	0.00	0.00	0.00	3.62
2995	3737	1.916181	GAAGGAGGAGGATTGGAACCA	59.084	52.381	0.00	0.00	0.00	3.67
3021	3763	0.880441	TTTGTGATGCGGATGGTGTG	59.120	50.000	0.00	0.00	0.00	3.82
3022	3764	0.959867	TTGTGATGCGGATGGTGTGG	60.960	55.000	0.00	0.00	0.00	4.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
78	120	7.912056	ATTCGATGAACTTTTCTCAGATTCA	57.088	32.000	0.00	0.00	34.03	2.57
410	814	7.936496	TGCTTTTTCCTTTTTCTTTTCCATT	57.064	28.000	0.00	0.00	0.00	3.16
411	815	7.936496	TTGCTTTTTCCTTTTTCTTTTCCAT	57.064	28.000	0.00	0.00	0.00	3.41
412	816	7.751768	TTTGCTTTTTCCTTTTTCTTTTCCA	57.248	28.000	0.00	0.00	0.00	3.53
413	817	7.270365	CGTTTTGCTTTTTCCTTTTTCTTTTCC	59.730	33.333	0.00	0.00	0.00	3.13
419	823	9.762062	TTATTTCGTTTTGCTTTTTCCTTTTTC	57.238	25.926	0.00	0.00	0.00	2.29
515	921	0.179156	CCAGCACACCAATCAATCGC	60.179	55.000	0.00	0.00	0.00	4.58
566	975	2.289375	CGCTCGCGGAGATTCGAAG	61.289	63.158	6.13	0.00	34.07	3.79
623	1346	3.804329	GGCCGGCCCACATAGGAA	61.804	66.667	36.64	0.00	41.22	3.36
650	1373	1.442857	TATTTTGCAAACGGGCGCG	60.443	52.632	22.69	22.69	36.28	6.86
687	1418	1.269257	GGCAAATCCTATTTGGCGCTC	60.269	52.381	19.05	0.00	43.33	5.03
835	1566	9.211485	AGTTCCAAATTATTGCAAATGAGAAAG	57.789	29.630	1.71	0.00	35.10	2.62
921	1652	5.111293	CGGATGGATTTGGAAATTTTGGAG	58.889	41.667	0.00	0.00	0.00	3.86
1033	1764	1.361993	GCGATGATCTCACGAGGCT	59.638	57.895	9.93	0.00	0.00	4.58
1038	1769	0.658829	GACGAGGCGATGATCTCACG	60.659	60.000	0.00	0.00	0.00	4.35
1059	1790	1.153568	ATGCAGACACCACGATCGG	60.154	57.895	20.98	8.32	0.00	4.18
1342	2073	1.153939	CTCCTCGTCGGCAACTGAG	60.154	63.158	0.00	0.00	0.00	3.35
1380	2111	2.278857	CATCCGACGCCTTCTCCG	60.279	66.667	0.00	0.00	0.00	4.63
1435	2166	1.673665	CCACTCCTTGCACTCTGGC	60.674	63.158	0.00	0.00	0.00	4.85
1591	2322	3.709880	TACCTTGCGATCACCGGCG	62.710	63.158	0.00	0.00	39.04	6.46
1645	2376	4.919168	TCACAAGTTTATTCTGTACCGTCG	59.081	41.667	0.00	0.00	0.00	5.12
1662	2393	4.952262	AATTGACCGACATCATCACAAG	57.048	40.909	0.00	0.00	0.00	3.16
1922	2661	4.237349	ACTGCGTTCAAAATTACCCTTG	57.763	40.909	0.00	0.00	0.00	3.61
1963	2702	5.878116	GCTGTGTCCAGGTTACATGTAATAA	59.122	40.000	20.72	0.00	39.22	1.40
1964	2703	5.424757	GCTGTGTCCAGGTTACATGTAATA	58.575	41.667	20.72	0.00	39.22	0.98
1965	2704	4.261801	GCTGTGTCCAGGTTACATGTAAT	58.738	43.478	20.72	3.75	39.22	1.89
2032	2774	4.118584	GCCCTTGGCTTTCACCAT	57.881	55.556	0.00	0.00	46.69	3.55
2059	2801	0.107703	TGTCCGCTTTATGGAGCAGG	60.108	55.000	3.51	5.30	42.83	4.85
2061	2803	0.613260	AGTGTCCGCTTTATGGAGCA	59.387	50.000	3.51	0.00	42.83	4.26
2063	2805	2.386661	ACAGTGTCCGCTTTATGGAG	57.613	50.000	0.00	0.00	35.82	3.86
2066	2808	6.346598	CGGATAAATACAGTGTCCGCTTTATG	60.347	42.308	0.00	0.00	44.27	1.90
2090	2832	1.258982	GCTTCTGTATCATTGTCCGCG	59.741	52.381	0.00	0.00	0.00	6.46
2099	2841	1.618837	GGATAGCCGGCTTCTGTATCA	59.381	52.381	37.74	15.04	0.00	2.15
2100	2842	1.618837	TGGATAGCCGGCTTCTGTATC	59.381	52.381	37.74	28.75	36.79	2.24
2104	2846	1.517242	GATTGGATAGCCGGCTTCTG	58.483	55.000	37.74	0.00	36.79	3.02
2111	2853	0.944386	CAAACGGGATTGGATAGCCG	59.056	55.000	0.00	0.00	36.79	5.52
2125	2867	9.702726	AAATCTCATTCGAAATGTATACAAACG	57.297	29.630	10.14	14.81	0.00	3.60
2129	2871	8.551205	GCTCAAATCTCATTCGAAATGTATACA	58.449	33.333	8.27	8.27	0.00	2.29
2131	2873	8.661352	TGCTCAAATCTCATTCGAAATGTATA	57.339	30.769	0.00	0.00	0.00	1.47
2135	2877	6.805271	AGTTTGCTCAAATCTCATTCGAAATG	59.195	34.615	0.00	1.49	32.36	2.32
2176	2918	6.096282	ATGAAAATCATCCGGTTTATCCGTTT	59.904	34.615	0.00	0.00	43.01	3.60
2177	2919	5.592688	ATGAAAATCATCCGGTTTATCCGTT	59.407	36.000	0.00	0.00	43.01	4.44
2178	2920	5.130350	ATGAAAATCATCCGGTTTATCCGT	58.870	37.500	0.00	0.00	43.01	4.69
2179	2921	5.689383	ATGAAAATCATCCGGTTTATCCG	57.311	39.130	0.00	0.00	42.64	4.18
2180	2922	9.810545	TTTAAATGAAAATCATCCGGTTTATCC	57.189	29.630	0.00	0.00	35.76	2.59
2246	2988	9.658799	ATGAAGATTTATACTATGTTGGATCCG	57.341	33.333	7.39	0.00	0.00	4.18
2256	2998	5.109903	GGCGCCGATGAAGATTTATACTAT	58.890	41.667	12.58	0.00	0.00	2.12
2288	3030	4.153475	ACACGGAAGGAAATAACAATGACG	59.847	41.667	0.00	0.00	0.00	4.35
2347	3089	2.693762	CGCCTTGTGCCTCATGTGG	61.694	63.158	9.54	9.54	36.24	4.17
2360	3102	1.074775	TGGGAGACAATTGCGCCTT	59.925	52.632	4.18	0.00	0.00	4.35
2416	3158	1.919240	TCGACTTGGCCTCTACAAGA	58.081	50.000	3.32	0.00	46.27	3.02
2441	3183	3.443045	CACCGGCTTGCCCACATC	61.443	66.667	0.00	0.00	0.00	3.06
2533	3275	2.864343	CGTTGAGAACCTGAACTTCGTT	59.136	45.455	0.00	0.00	0.00	3.85
2536	3278	2.801111	GGTCGTTGAGAACCTGAACTTC	59.199	50.000	0.00	0.00	0.00	3.01
2585	3327	2.238646	TCGGCCAAATCTATGGTGAGTT	59.761	45.455	2.24	0.00	42.75	3.01
2627	3369	1.067821	GCAGTACAATCTCTCCCTCCG	59.932	57.143	0.00	0.00	0.00	4.63
2704	3446	1.086067	ACTTCGATGCTGTCATGGCG	61.086	55.000	0.00	0.00	31.96	5.69
2713	3455	3.031964	GCAAGCGCACTTCGATGCT	62.032	57.895	11.47	0.74	44.05	3.79
2770	3512	2.122167	CGACGAGCTAGAGCCCCTT	61.122	63.158	0.00	0.00	43.38	3.95
2785	3527	2.876219	GAGGACACCTCGGACGAC	59.124	66.667	1.97	0.00	41.08	4.34
2850	3592	4.406648	TGTGCATGGTGAATAGAGGTAG	57.593	45.455	0.00	0.00	0.00	3.18
2870	3612	1.227823	TCAGTTGCCAGGGTCGTTG	60.228	57.895	0.00	0.00	0.00	4.10
2884	3626	2.980233	GCAGGCTTTGCGGTCAGT	60.980	61.111	0.00	0.00	44.09	3.41
2942	3684	0.824759	ATGACCGTGAACTCTAGGGC	59.175	55.000	0.00	0.00	0.00	5.19
2949	3691	0.898320	CTCCTCCATGACCGTGAACT	59.102	55.000	0.00	0.00	0.00	3.01
2993	3735	0.110688	CGCATCACAAACACGTCTGG	60.111	55.000	0.00	0.00	0.00	3.86
2995	3737	0.249699	TCCGCATCACAAACACGTCT	60.250	50.000	0.00	0.00	0.00	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.