Multiple sequence alignment - TraesCS2D01G202200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G202200 chr2D 100.000 4715 0 0 1 4715 154185121 154180407 0.000000e+00 8708
1 TraesCS2D01G202200 chr2D 87.500 136 14 3 7 140 48605062 48604928 2.270000e-33 154
2 TraesCS2D01G202200 chr2A 93.787 2366 88 36 1770 4091 146786915 146789265 0.000000e+00 3500
3 TraesCS2D01G202200 chr2A 90.438 502 39 6 4108 4601 146789252 146789752 0.000000e+00 652
4 TraesCS2D01G202200 chr2A 86.784 454 18 17 699 1120 146785754 146786197 7.140000e-128 468
5 TraesCS2D01G202200 chr2A 92.000 300 15 3 1478 1775 146786490 146786782 3.400000e-111 412
6 TraesCS2D01G202200 chr2A 92.340 235 17 1 1247 1480 146786217 146786451 2.720000e-87 333
7 TraesCS2D01G202200 chr2B 92.536 1715 64 20 2417 4094 211625381 211623694 0.000000e+00 2399
8 TraesCS2D01G202200 chr2B 94.512 656 35 1 1773 2428 211626067 211625413 0.000000e+00 1011
9 TraesCS2D01G202200 chr2B 87.732 807 39 14 721 1481 211627315 211626523 0.000000e+00 887
10 TraesCS2D01G202200 chr2B 90.058 513 36 12 4108 4607 211623710 211623200 0.000000e+00 651
11 TraesCS2D01G202200 chr2B 88.449 303 13 10 1478 1776 211626485 211626201 3.490000e-91 346
12 TraesCS2D01G202200 chr2B 86.760 287 35 3 254 539 211628210 211627926 2.740000e-82 316
13 TraesCS2D01G202200 chr2B 88.235 136 15 1 1 135 19981704 19981839 1.360000e-35 161
14 TraesCS2D01G202200 chr4B 78.252 938 177 21 2769 3696 503564878 503565798 1.140000e-160 577
15 TraesCS2D01G202200 chr4B 82.609 345 56 4 2943 3285 46609002 46609344 7.670000e-78 302
16 TraesCS2D01G202200 chr4B 88.406 138 16 0 1 138 120188292 120188429 2.920000e-37 167
17 TraesCS2D01G202200 chr4B 88.136 118 14 0 998 1115 503561104 503561221 1.770000e-29 141
18 TraesCS2D01G202200 chr4D 84.667 300 46 0 3397 3696 405324085 405324384 2.760000e-77 300
19 TraesCS2D01G202200 chr4D 81.395 344 62 2 2943 3285 32221296 32221638 3.590000e-71 279
20 TraesCS2D01G202200 chr4D 88.889 135 15 0 4 138 208646359 208646225 2.920000e-37 167
21 TraesCS2D01G202200 chr4D 87.407 135 17 0 1 135 454422525 454422659 6.320000e-34 156
22 TraesCS2D01G202200 chr4D 85.333 150 18 4 967 1115 405321623 405321769 8.170000e-33 152
23 TraesCS2D01G202200 chr4A 83.654 312 48 1 3397 3708 63013282 63013590 1.660000e-74 291
24 TraesCS2D01G202200 chr4A 82.812 320 53 2 2967 3285 570478686 570478368 7.720000e-73 285
25 TraesCS2D01G202200 chr4A 86.260 131 16 2 986 1115 63010974 63011103 1.770000e-29 141
26 TraesCS2D01G202200 chr1A 81.977 344 60 2 2943 3285 535063820 535064162 1.660000e-74 291
27 TraesCS2D01G202200 chr5D 88.636 132 15 0 7 138 428584141 428584010 1.360000e-35 161
28 TraesCS2D01G202200 chr7D 87.143 140 16 2 1 139 285239662 285239800 1.760000e-34 158
29 TraesCS2D01G202200 chr6B 87.879 132 16 0 4 135 136095373 136095242 6.320000e-34 156
30 TraesCS2D01G202200 chr3B 87.591 137 14 2 1 135 794886052 794886187 6.320000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G202200 chr2D 154180407 154185121 4714 True 8708 8708 100.000000 1 4715 1 chr2D.!!$R2 4714
1 TraesCS2D01G202200 chr2A 146785754 146789752 3998 False 1073 3500 91.069800 699 4601 5 chr2A.!!$F1 3902
2 TraesCS2D01G202200 chr2B 211623200 211628210 5010 True 935 2399 90.007833 254 4607 6 chr2B.!!$R1 4353
3 TraesCS2D01G202200 chr4B 503561104 503565798 4694 False 359 577 83.194000 998 3696 2 chr4B.!!$F3 2698
4 TraesCS2D01G202200 chr4D 405321623 405324384 2761 False 226 300 85.000000 967 3696 2 chr4D.!!$F3 2729
5 TraesCS2D01G202200 chr4A 63010974 63013590 2616 False 216 291 84.957000 986 3708 2 chr4A.!!$F1 2722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.027586 GTTAATGCACCGCGCCTAAG 59.972 55.0 0.00 0.00 41.33 2.18 F
195 196 0.031857 CCAATTCCAGTTGCAACGCA 59.968 50.0 23.21 8.86 36.47 5.24 F
203 204 0.250727 AGTTGCAACGCACAGGGTAT 60.251 50.0 23.21 0.00 38.71 2.73 F
1172 1703 0.523072 CCGTTTCTTGATGCACCCAG 59.477 55.0 0.00 0.00 0.00 4.45 F
2062 2984 0.601841 CTAACAACTTCGCCCGTGGT 60.602 55.0 0.00 0.00 0.00 4.16 F
3441 7049 0.035056 GCATCAACTACCAGCCACCT 60.035 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 2314 1.133407 TGAAGCACCACGTTTCCAAAC 59.867 47.619 0.0 0.0 34.12 2.93 R
1742 2371 2.125512 AATCCGTGCTCAGTCCGC 60.126 61.111 0.0 0.0 0.00 5.54 R
2153 5346 3.320541 CCTTCCCAACTGCATTACACAAA 59.679 43.478 0.0 0.0 0.00 2.83 R
2632 6212 0.250901 ACAGCCTGAATGGTCCACAC 60.251 55.000 0.0 0.0 38.35 3.82 R
3639 7247 1.004394 TCGTAGTCCTTCTCCAGAGCA 59.996 52.381 0.0 0.0 0.00 4.26 R
4243 7864 0.396811 CCTCCCTCGGACAACACTTT 59.603 55.000 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.241663 TCGGTTGATTCCTTTATTTATGTCG 57.758 36.000 0.00 0.00 0.00 4.35
36 37 7.042950 TCGGTTGATTCCTTTATTTATGTCGA 58.957 34.615 0.00 0.00 0.00 4.20
37 38 7.713507 TCGGTTGATTCCTTTATTTATGTCGAT 59.286 33.333 0.00 0.00 0.00 3.59
38 39 8.984764 CGGTTGATTCCTTTATTTATGTCGATA 58.015 33.333 0.00 0.00 0.00 2.92
53 54 9.590451 TTTATGTCGATAAATAAGAAACGAGGT 57.410 29.630 0.00 0.00 30.47 3.85
54 55 9.590451 TTATGTCGATAAATAAGAAACGAGGTT 57.410 29.630 0.00 0.00 0.00 3.50
55 56 7.285783 TGTCGATAAATAAGAAACGAGGTTG 57.714 36.000 0.00 0.00 0.00 3.77
56 57 6.869913 TGTCGATAAATAAGAAACGAGGTTGT 59.130 34.615 0.00 0.00 0.00 3.32
57 58 7.062605 TGTCGATAAATAAGAAACGAGGTTGTC 59.937 37.037 0.00 0.00 0.00 3.18
67 68 2.503943 CGAGGTTGTCGTTAATGCAC 57.496 50.000 0.00 0.00 44.20 4.57
68 69 1.127951 CGAGGTTGTCGTTAATGCACC 59.872 52.381 0.00 3.47 44.20 5.01
69 70 1.127951 GAGGTTGTCGTTAATGCACCG 59.872 52.381 0.00 0.00 0.00 4.94
70 71 0.453782 GGTTGTCGTTAATGCACCGC 60.454 55.000 0.00 0.00 0.00 5.68
71 72 0.787908 GTTGTCGTTAATGCACCGCG 60.788 55.000 0.00 0.00 0.00 6.46
72 73 2.276430 GTCGTTAATGCACCGCGC 60.276 61.111 0.00 0.00 42.89 6.86
73 74 3.492545 TCGTTAATGCACCGCGCC 61.493 61.111 0.00 0.00 41.33 6.53
74 75 3.496131 CGTTAATGCACCGCGCCT 61.496 61.111 0.00 0.00 41.33 5.52
75 76 2.168503 CGTTAATGCACCGCGCCTA 61.169 57.895 0.00 0.00 41.33 3.93
76 77 1.697772 CGTTAATGCACCGCGCCTAA 61.698 55.000 0.00 0.00 41.33 2.69
77 78 0.027586 GTTAATGCACCGCGCCTAAG 59.972 55.000 0.00 0.00 41.33 2.18
78 79 0.391927 TTAATGCACCGCGCCTAAGT 60.392 50.000 0.00 0.00 41.33 2.24
79 80 1.087202 TAATGCACCGCGCCTAAGTG 61.087 55.000 0.00 4.02 41.33 3.16
80 81 3.605749 ATGCACCGCGCCTAAGTGT 62.606 57.895 12.83 0.00 41.33 3.55
81 82 3.047877 GCACCGCGCCTAAGTGTT 61.048 61.111 12.83 0.00 33.96 3.32
82 83 2.613506 GCACCGCGCCTAAGTGTTT 61.614 57.895 12.83 0.00 33.96 2.83
83 84 1.946267 CACCGCGCCTAAGTGTTTT 59.054 52.632 0.00 0.00 0.00 2.43
84 85 0.385473 CACCGCGCCTAAGTGTTTTG 60.385 55.000 0.00 0.00 0.00 2.44
85 86 1.209127 CCGCGCCTAAGTGTTTTGG 59.791 57.895 0.00 0.00 33.04 3.28
86 87 1.209127 CGCGCCTAAGTGTTTTGGG 59.791 57.895 0.00 0.00 30.91 4.12
87 88 1.231958 CGCGCCTAAGTGTTTTGGGA 61.232 55.000 0.00 0.00 30.91 4.37
88 89 1.173913 GCGCCTAAGTGTTTTGGGAT 58.826 50.000 0.00 0.00 30.91 3.85
89 90 1.544246 GCGCCTAAGTGTTTTGGGATT 59.456 47.619 0.00 0.00 30.91 3.01
90 91 2.750712 GCGCCTAAGTGTTTTGGGATTA 59.249 45.455 0.00 0.00 30.91 1.75
91 92 3.380320 GCGCCTAAGTGTTTTGGGATTAT 59.620 43.478 0.00 0.00 30.91 1.28
92 93 4.142249 GCGCCTAAGTGTTTTGGGATTATT 60.142 41.667 0.00 0.00 30.91 1.40
93 94 5.623596 GCGCCTAAGTGTTTTGGGATTATTT 60.624 40.000 0.00 0.00 30.91 1.40
94 95 5.804979 CGCCTAAGTGTTTTGGGATTATTTG 59.195 40.000 0.00 0.00 30.91 2.32
95 96 6.349777 CGCCTAAGTGTTTTGGGATTATTTGA 60.350 38.462 0.00 0.00 30.91 2.69
96 97 7.555965 GCCTAAGTGTTTTGGGATTATTTGAT 58.444 34.615 0.00 0.00 30.91 2.57
97 98 8.040727 GCCTAAGTGTTTTGGGATTATTTGATT 58.959 33.333 0.00 0.00 30.91 2.57
98 99 9.942850 CCTAAGTGTTTTGGGATTATTTGATTT 57.057 29.630 0.00 0.00 0.00 2.17
125 126 9.053840 TCTTAAGATGACTTATACACCTAGACG 57.946 37.037 0.00 0.00 38.23 4.18
126 127 6.636562 AAGATGACTTATACACCTAGACGG 57.363 41.667 0.00 0.00 34.28 4.79
127 128 5.938279 AGATGACTTATACACCTAGACGGA 58.062 41.667 0.00 0.00 36.31 4.69
128 129 5.998981 AGATGACTTATACACCTAGACGGAG 59.001 44.000 0.00 0.00 36.31 4.63
129 130 4.458397 TGACTTATACACCTAGACGGAGG 58.542 47.826 0.00 0.00 42.89 4.30
130 131 3.819902 GACTTATACACCTAGACGGAGGG 59.180 52.174 5.42 0.00 41.36 4.30
131 132 3.461085 ACTTATACACCTAGACGGAGGGA 59.539 47.826 5.42 0.00 41.36 4.20
132 133 2.660670 ATACACCTAGACGGAGGGAG 57.339 55.000 5.42 0.78 41.36 4.30
133 134 1.293062 TACACCTAGACGGAGGGAGT 58.707 55.000 5.42 5.82 41.36 3.85
134 135 1.293062 ACACCTAGACGGAGGGAGTA 58.707 55.000 5.42 0.00 41.36 2.59
135 136 1.064832 ACACCTAGACGGAGGGAGTAC 60.065 57.143 5.42 0.00 41.36 2.73
136 137 1.212441 CACCTAGACGGAGGGAGTACT 59.788 57.143 0.00 0.00 41.36 2.73
137 138 2.437281 CACCTAGACGGAGGGAGTACTA 59.563 54.545 0.00 0.00 41.36 1.82
138 139 3.118112 CACCTAGACGGAGGGAGTACTAA 60.118 52.174 0.00 0.00 41.36 2.24
139 140 3.525199 ACCTAGACGGAGGGAGTACTAAA 59.475 47.826 0.00 0.00 41.36 1.85
140 141 4.136051 CCTAGACGGAGGGAGTACTAAAG 58.864 52.174 0.00 0.00 32.39 1.85
141 142 3.735720 AGACGGAGGGAGTACTAAAGT 57.264 47.619 0.00 0.00 0.00 2.66
142 143 4.044946 AGACGGAGGGAGTACTAAAGTT 57.955 45.455 0.00 0.00 0.00 2.66
143 144 5.184892 AGACGGAGGGAGTACTAAAGTTA 57.815 43.478 0.00 0.00 0.00 2.24
144 145 4.946772 AGACGGAGGGAGTACTAAAGTTAC 59.053 45.833 0.00 0.00 0.00 2.50
145 146 4.666512 ACGGAGGGAGTACTAAAGTTACA 58.333 43.478 0.00 0.00 0.00 2.41
146 147 5.267587 ACGGAGGGAGTACTAAAGTTACAT 58.732 41.667 0.00 0.00 0.00 2.29
147 148 5.126707 ACGGAGGGAGTACTAAAGTTACATG 59.873 44.000 0.00 0.00 0.00 3.21
148 149 5.358090 GGAGGGAGTACTAAAGTTACATGC 58.642 45.833 0.00 0.00 0.00 4.06
149 150 5.354842 AGGGAGTACTAAAGTTACATGCC 57.645 43.478 0.00 0.00 0.00 4.40
150 151 4.117685 GGGAGTACTAAAGTTACATGCCG 58.882 47.826 0.00 0.00 0.00 5.69
151 152 3.554731 GGAGTACTAAAGTTACATGCCGC 59.445 47.826 0.00 0.00 0.00 6.53
152 153 3.528532 AGTACTAAAGTTACATGCCGCC 58.471 45.455 0.00 0.00 0.00 6.13
153 154 2.483014 ACTAAAGTTACATGCCGCCA 57.517 45.000 0.00 0.00 0.00 5.69
154 155 2.785562 ACTAAAGTTACATGCCGCCAA 58.214 42.857 0.00 0.00 0.00 4.52
155 156 3.150767 ACTAAAGTTACATGCCGCCAAA 58.849 40.909 0.00 0.00 0.00 3.28
156 157 3.761752 ACTAAAGTTACATGCCGCCAAAT 59.238 39.130 0.00 0.00 0.00 2.32
157 158 2.939460 AAGTTACATGCCGCCAAATC 57.061 45.000 0.00 0.00 0.00 2.17
158 159 2.128771 AGTTACATGCCGCCAAATCT 57.871 45.000 0.00 0.00 0.00 2.40
159 160 2.446435 AGTTACATGCCGCCAAATCTT 58.554 42.857 0.00 0.00 0.00 2.40
160 161 3.616219 AGTTACATGCCGCCAAATCTTA 58.384 40.909 0.00 0.00 0.00 2.10
161 162 3.377172 AGTTACATGCCGCCAAATCTTAC 59.623 43.478 0.00 0.00 0.00 2.34
162 163 1.832883 ACATGCCGCCAAATCTTACA 58.167 45.000 0.00 0.00 0.00 2.41
163 164 1.745087 ACATGCCGCCAAATCTTACAG 59.255 47.619 0.00 0.00 0.00 2.74
164 165 2.016318 CATGCCGCCAAATCTTACAGA 58.984 47.619 0.00 0.00 0.00 3.41
165 166 2.192664 TGCCGCCAAATCTTACAGAA 57.807 45.000 0.00 0.00 0.00 3.02
166 167 2.509569 TGCCGCCAAATCTTACAGAAA 58.490 42.857 0.00 0.00 0.00 2.52
167 168 2.227865 TGCCGCCAAATCTTACAGAAAC 59.772 45.455 0.00 0.00 0.00 2.78
168 169 2.415491 GCCGCCAAATCTTACAGAAACC 60.415 50.000 0.00 0.00 0.00 3.27
169 170 2.817258 CCGCCAAATCTTACAGAAACCA 59.183 45.455 0.00 0.00 0.00 3.67
170 171 3.365969 CCGCCAAATCTTACAGAAACCAC 60.366 47.826 0.00 0.00 0.00 4.16
171 172 3.502211 CGCCAAATCTTACAGAAACCACT 59.498 43.478 0.00 0.00 0.00 4.00
172 173 4.613622 CGCCAAATCTTACAGAAACCACTG 60.614 45.833 0.00 0.00 42.78 3.66
173 174 4.798574 CCAAATCTTACAGAAACCACTGC 58.201 43.478 0.00 0.00 41.06 4.40
174 175 4.278170 CCAAATCTTACAGAAACCACTGCA 59.722 41.667 0.00 0.00 41.06 4.41
175 176 5.047802 CCAAATCTTACAGAAACCACTGCAT 60.048 40.000 0.00 0.00 41.06 3.96
176 177 5.886960 AATCTTACAGAAACCACTGCATC 57.113 39.130 0.00 0.00 41.06 3.91
177 178 3.674997 TCTTACAGAAACCACTGCATCC 58.325 45.455 0.00 0.00 41.06 3.51
178 179 3.072330 TCTTACAGAAACCACTGCATCCA 59.928 43.478 0.00 0.00 41.06 3.41
179 180 2.363306 ACAGAAACCACTGCATCCAA 57.637 45.000 0.00 0.00 41.06 3.53
180 181 2.880443 ACAGAAACCACTGCATCCAAT 58.120 42.857 0.00 0.00 41.06 3.16
181 182 3.233507 ACAGAAACCACTGCATCCAATT 58.766 40.909 0.00 0.00 41.06 2.32
182 183 3.256631 ACAGAAACCACTGCATCCAATTC 59.743 43.478 0.00 0.00 41.06 2.17
183 184 2.827921 AGAAACCACTGCATCCAATTCC 59.172 45.455 0.00 0.00 0.00 3.01
184 185 2.307496 AACCACTGCATCCAATTCCA 57.693 45.000 0.00 0.00 0.00 3.53
185 186 1.843368 ACCACTGCATCCAATTCCAG 58.157 50.000 0.00 0.00 0.00 3.86
186 187 1.076024 ACCACTGCATCCAATTCCAGT 59.924 47.619 0.00 0.00 38.97 4.00
187 188 2.173519 CCACTGCATCCAATTCCAGTT 58.826 47.619 0.00 0.00 36.47 3.16
188 189 2.094390 CCACTGCATCCAATTCCAGTTG 60.094 50.000 0.00 0.00 36.47 3.16
189 190 1.547372 ACTGCATCCAATTCCAGTTGC 59.453 47.619 0.00 0.00 35.14 4.17
190 191 1.546923 CTGCATCCAATTCCAGTTGCA 59.453 47.619 0.00 0.00 37.73 4.08
191 192 1.969208 TGCATCCAATTCCAGTTGCAA 59.031 42.857 0.00 0.00 37.17 4.08
192 193 2.288948 TGCATCCAATTCCAGTTGCAAC 60.289 45.455 22.17 22.17 37.17 4.17
193 194 2.598589 CATCCAATTCCAGTTGCAACG 58.401 47.619 23.21 17.24 0.00 4.10
194 195 0.313672 TCCAATTCCAGTTGCAACGC 59.686 50.000 23.21 0.96 0.00 4.84
195 196 0.031857 CCAATTCCAGTTGCAACGCA 59.968 50.000 23.21 8.86 36.47 5.24
196 197 1.130955 CAATTCCAGTTGCAACGCAC 58.869 50.000 23.21 0.36 38.71 5.34
197 198 0.743688 AATTCCAGTTGCAACGCACA 59.256 45.000 23.21 10.13 38.71 4.57
198 199 0.311790 ATTCCAGTTGCAACGCACAG 59.688 50.000 23.21 11.62 38.71 3.66
199 200 1.723608 TTCCAGTTGCAACGCACAGG 61.724 55.000 23.21 19.27 38.71 4.00
200 201 2.332514 CAGTTGCAACGCACAGGG 59.667 61.111 23.21 5.28 38.71 4.45
201 202 2.124320 AGTTGCAACGCACAGGGT 60.124 55.556 23.21 0.64 38.71 4.34
202 203 1.147376 AGTTGCAACGCACAGGGTA 59.853 52.632 23.21 0.00 38.71 3.69
203 204 0.250727 AGTTGCAACGCACAGGGTAT 60.251 50.000 23.21 0.00 38.71 2.73
204 205 1.002659 AGTTGCAACGCACAGGGTATA 59.997 47.619 23.21 0.00 38.71 1.47
205 206 1.807742 GTTGCAACGCACAGGGTATAA 59.192 47.619 14.90 0.00 38.71 0.98
206 207 2.411628 TGCAACGCACAGGGTATAAT 57.588 45.000 0.00 0.00 31.71 1.28
207 208 2.285083 TGCAACGCACAGGGTATAATC 58.715 47.619 0.00 0.00 31.71 1.75
208 209 2.093181 TGCAACGCACAGGGTATAATCT 60.093 45.455 0.00 0.00 31.71 2.40
209 210 2.544267 GCAACGCACAGGGTATAATCTC 59.456 50.000 0.00 0.00 0.00 2.75
210 211 3.741388 GCAACGCACAGGGTATAATCTCT 60.741 47.826 0.00 0.00 0.00 3.10
211 212 4.500887 GCAACGCACAGGGTATAATCTCTA 60.501 45.833 0.00 0.00 0.00 2.43
212 213 5.223382 CAACGCACAGGGTATAATCTCTAG 58.777 45.833 0.00 0.00 0.00 2.43
213 214 4.471548 ACGCACAGGGTATAATCTCTAGT 58.528 43.478 0.00 0.00 0.00 2.57
214 215 4.894114 ACGCACAGGGTATAATCTCTAGTT 59.106 41.667 0.00 0.00 0.00 2.24
215 216 5.363005 ACGCACAGGGTATAATCTCTAGTTT 59.637 40.000 0.00 0.00 0.00 2.66
216 217 6.127140 ACGCACAGGGTATAATCTCTAGTTTT 60.127 38.462 0.00 0.00 0.00 2.43
217 218 6.761714 CGCACAGGGTATAATCTCTAGTTTTT 59.238 38.462 0.00 0.00 0.00 1.94
237 238 4.647424 TTTAAGAGGTTTGTGTTGCTGG 57.353 40.909 0.00 0.00 0.00 4.85
238 239 2.143876 AAGAGGTTTGTGTTGCTGGT 57.856 45.000 0.00 0.00 0.00 4.00
239 240 2.143876 AGAGGTTTGTGTTGCTGGTT 57.856 45.000 0.00 0.00 0.00 3.67
240 241 2.456577 AGAGGTTTGTGTTGCTGGTTT 58.543 42.857 0.00 0.00 0.00 3.27
241 242 2.166254 AGAGGTTTGTGTTGCTGGTTTG 59.834 45.455 0.00 0.00 0.00 2.93
242 243 2.165437 GAGGTTTGTGTTGCTGGTTTGA 59.835 45.455 0.00 0.00 0.00 2.69
243 244 2.765699 AGGTTTGTGTTGCTGGTTTGAT 59.234 40.909 0.00 0.00 0.00 2.57
244 245 3.197549 AGGTTTGTGTTGCTGGTTTGATT 59.802 39.130 0.00 0.00 0.00 2.57
245 246 4.404073 AGGTTTGTGTTGCTGGTTTGATTA 59.596 37.500 0.00 0.00 0.00 1.75
246 247 5.070313 AGGTTTGTGTTGCTGGTTTGATTAT 59.930 36.000 0.00 0.00 0.00 1.28
247 248 5.177327 GGTTTGTGTTGCTGGTTTGATTATG 59.823 40.000 0.00 0.00 0.00 1.90
248 249 5.528043 TTGTGTTGCTGGTTTGATTATGT 57.472 34.783 0.00 0.00 0.00 2.29
249 250 4.869215 TGTGTTGCTGGTTTGATTATGTG 58.131 39.130 0.00 0.00 0.00 3.21
250 251 4.340666 TGTGTTGCTGGTTTGATTATGTGT 59.659 37.500 0.00 0.00 0.00 3.72
251 252 4.681025 GTGTTGCTGGTTTGATTATGTGTG 59.319 41.667 0.00 0.00 0.00 3.82
252 253 3.574284 TGCTGGTTTGATTATGTGTGC 57.426 42.857 0.00 0.00 0.00 4.57
253 254 3.156293 TGCTGGTTTGATTATGTGTGCT 58.844 40.909 0.00 0.00 0.00 4.40
254 255 3.573538 TGCTGGTTTGATTATGTGTGCTT 59.426 39.130 0.00 0.00 0.00 3.91
255 256 4.168760 GCTGGTTTGATTATGTGTGCTTC 58.831 43.478 0.00 0.00 0.00 3.86
256 257 4.321156 GCTGGTTTGATTATGTGTGCTTCA 60.321 41.667 0.00 0.00 0.00 3.02
299 300 5.105392 ACACAGAAAGTTGCCATCTGAAAAA 60.105 36.000 8.88 0.00 42.48 1.94
326 327 2.361438 ACCGAGGGAAGATAGTAAAGCG 59.639 50.000 0.00 0.00 0.00 4.68
331 332 5.125739 CGAGGGAAGATAGTAAAGCGGATAT 59.874 44.000 0.00 0.00 0.00 1.63
333 334 5.780793 AGGGAAGATAGTAAAGCGGATATGT 59.219 40.000 0.00 0.00 0.00 2.29
346 347 2.353505 CGGATATGTCAGGAGGATGCAG 60.354 54.545 0.00 0.00 0.00 4.41
347 348 2.902486 GGATATGTCAGGAGGATGCAGA 59.098 50.000 0.00 0.00 0.00 4.26
360 361 5.398603 AGGATGCAGACTATATAGCACAC 57.601 43.478 9.78 0.59 40.14 3.82
362 363 5.047448 AGGATGCAGACTATATAGCACACAG 60.047 44.000 9.78 0.00 40.14 3.66
363 364 5.047731 GGATGCAGACTATATAGCACACAGA 60.048 44.000 9.78 0.00 40.14 3.41
364 365 5.444663 TGCAGACTATATAGCACACAGAG 57.555 43.478 9.78 0.00 31.05 3.35
365 366 4.889995 TGCAGACTATATAGCACACAGAGT 59.110 41.667 9.78 0.00 31.05 3.24
366 367 6.062095 TGCAGACTATATAGCACACAGAGTA 58.938 40.000 9.78 0.00 31.05 2.59
367 368 6.205658 TGCAGACTATATAGCACACAGAGTAG 59.794 42.308 9.78 0.00 31.05 2.57
369 370 7.041030 GCAGACTATATAGCACACAGAGTAGAA 60.041 40.741 9.78 0.00 0.00 2.10
370 371 8.841300 CAGACTATATAGCACACAGAGTAGAAA 58.159 37.037 9.78 0.00 0.00 2.52
371 372 8.842280 AGACTATATAGCACACAGAGTAGAAAC 58.158 37.037 9.78 0.00 0.00 2.78
373 374 6.694877 ATATAGCACACAGAGTAGAAACGA 57.305 37.500 0.00 0.00 0.00 3.85
437 438 1.386961 GCGTCGAGATACGTGTGATC 58.613 55.000 0.00 0.00 44.64 2.92
443 444 3.804873 TCGAGATACGTGTGATCAGAGAG 59.195 47.826 0.00 0.00 43.13 3.20
447 448 1.911057 ACGTGTGATCAGAGAGGTGA 58.089 50.000 0.00 0.00 0.00 4.02
478 479 2.581354 CCAGAACGGGCCAGAGAG 59.419 66.667 10.86 0.00 0.00 3.20
483 484 2.579684 GAACGGGCCAGAGAGCGAAT 62.580 60.000 10.86 0.00 0.00 3.34
496 497 5.461737 CAGAGAGCGAATCTTTCCTCATTAC 59.538 44.000 0.00 0.00 38.84 1.89
503 504 7.035612 GCGAATCTTTCCTCATTACCATTTTT 58.964 34.615 0.00 0.00 0.00 1.94
504 505 7.009540 GCGAATCTTTCCTCATTACCATTTTTG 59.990 37.037 0.00 0.00 0.00 2.44
538 539 3.199071 AGAGGTGTGTGTTACTGGTTTGA 59.801 43.478 0.00 0.00 0.00 2.69
539 540 4.134563 GAGGTGTGTGTTACTGGTTTGAT 58.865 43.478 0.00 0.00 0.00 2.57
540 541 4.532834 AGGTGTGTGTTACTGGTTTGATT 58.467 39.130 0.00 0.00 0.00 2.57
541 542 5.686753 AGGTGTGTGTTACTGGTTTGATTA 58.313 37.500 0.00 0.00 0.00 1.75
542 543 6.123651 AGGTGTGTGTTACTGGTTTGATTAA 58.876 36.000 0.00 0.00 0.00 1.40
543 544 6.775629 AGGTGTGTGTTACTGGTTTGATTAAT 59.224 34.615 0.00 0.00 0.00 1.40
544 545 7.940137 AGGTGTGTGTTACTGGTTTGATTAATA 59.060 33.333 0.00 0.00 0.00 0.98
545 546 8.234546 GGTGTGTGTTACTGGTTTGATTAATAG 58.765 37.037 0.00 0.00 0.00 1.73
546 547 8.995220 GTGTGTGTTACTGGTTTGATTAATAGA 58.005 33.333 0.00 0.00 0.00 1.98
547 548 9.733556 TGTGTGTTACTGGTTTGATTAATAGAT 57.266 29.630 0.00 0.00 0.00 1.98
549 550 9.391006 TGTGTTACTGGTTTGATTAATAGATCC 57.609 33.333 0.00 0.00 0.00 3.36
550 551 9.614792 GTGTTACTGGTTTGATTAATAGATCCT 57.385 33.333 0.00 0.00 0.00 3.24
551 552 9.832445 TGTTACTGGTTTGATTAATAGATCCTC 57.168 33.333 0.00 0.00 0.00 3.71
552 553 8.979574 GTTACTGGTTTGATTAATAGATCCTCG 58.020 37.037 0.00 0.00 0.00 4.63
553 554 7.125792 ACTGGTTTGATTAATAGATCCTCGT 57.874 36.000 0.00 0.00 0.00 4.18
554 555 6.986817 ACTGGTTTGATTAATAGATCCTCGTG 59.013 38.462 0.00 0.00 0.00 4.35
555 556 5.758296 TGGTTTGATTAATAGATCCTCGTGC 59.242 40.000 0.00 0.00 0.00 5.34
556 557 5.992217 GGTTTGATTAATAGATCCTCGTGCT 59.008 40.000 0.00 0.00 0.00 4.40
557 558 6.483640 GGTTTGATTAATAGATCCTCGTGCTT 59.516 38.462 0.00 0.00 0.00 3.91
558 559 7.012421 GGTTTGATTAATAGATCCTCGTGCTTT 59.988 37.037 0.00 0.00 0.00 3.51
559 560 8.398665 GTTTGATTAATAGATCCTCGTGCTTTT 58.601 33.333 0.00 0.00 0.00 2.27
560 561 8.506168 TTGATTAATAGATCCTCGTGCTTTTT 57.494 30.769 0.00 0.00 0.00 1.94
561 562 9.607988 TTGATTAATAGATCCTCGTGCTTTTTA 57.392 29.630 0.00 0.00 0.00 1.52
562 563 9.607988 TGATTAATAGATCCTCGTGCTTTTTAA 57.392 29.630 0.00 0.00 0.00 1.52
595 617 8.655935 AGGAAAAGATGTCTCATAAAAATGGT 57.344 30.769 0.00 0.00 0.00 3.55
603 625 8.833231 ATGTCTCATAAAAATGGTAGTATCCG 57.167 34.615 0.00 0.00 0.00 4.18
623 645 4.585162 TCCGATTCCTTGTCTCTCCTATTC 59.415 45.833 0.00 0.00 0.00 1.75
627 649 6.644592 CGATTCCTTGTCTCTCCTATTCATTC 59.355 42.308 0.00 0.00 0.00 2.67
628 650 6.874278 TTCCTTGTCTCTCCTATTCATTCA 57.126 37.500 0.00 0.00 0.00 2.57
633 655 9.618890 CCTTGTCTCTCCTATTCATTCATTTTA 57.381 33.333 0.00 0.00 0.00 1.52
681 858 3.641436 AGTATTAGTGATGACGATGGCCA 59.359 43.478 8.56 8.56 0.00 5.36
682 859 3.777106 ATTAGTGATGACGATGGCCAT 57.223 42.857 20.96 20.96 0.00 4.40
683 860 2.531522 TAGTGATGACGATGGCCATG 57.468 50.000 26.56 17.71 0.00 3.66
684 861 0.816825 AGTGATGACGATGGCCATGC 60.817 55.000 26.56 13.83 0.00 4.06
685 862 1.096967 GTGATGACGATGGCCATGCA 61.097 55.000 26.56 18.41 0.00 3.96
730 1214 1.440145 GAGCGGCATTTACTCCCTGC 61.440 60.000 1.45 0.00 35.16 4.85
731 1215 1.748879 GCGGCATTTACTCCCTGCA 60.749 57.895 0.00 0.00 37.64 4.41
732 1216 1.312371 GCGGCATTTACTCCCTGCAA 61.312 55.000 0.00 0.00 37.64 4.08
733 1217 1.173043 CGGCATTTACTCCCTGCAAA 58.827 50.000 0.00 0.00 37.64 3.68
734 1218 1.135402 CGGCATTTACTCCCTGCAAAC 60.135 52.381 0.00 0.00 37.64 2.93
735 1219 1.135402 GGCATTTACTCCCTGCAAACG 60.135 52.381 0.00 0.00 37.64 3.60
736 1220 1.539827 GCATTTACTCCCTGCAAACGT 59.460 47.619 0.00 0.00 35.96 3.99
737 1221 2.668279 GCATTTACTCCCTGCAAACGTG 60.668 50.000 0.00 0.00 35.96 4.49
738 1222 2.623878 TTTACTCCCTGCAAACGTGA 57.376 45.000 0.00 0.00 0.00 4.35
739 1223 1.873698 TTACTCCCTGCAAACGTGAC 58.126 50.000 0.00 0.00 0.00 3.67
766 1250 3.262420 CCATCGGTAACTGAACAGAAGG 58.738 50.000 8.87 0.00 0.00 3.46
855 1339 4.404098 CCCGCAAACTACCCCGCT 62.404 66.667 0.00 0.00 0.00 5.52
858 1342 1.375523 CGCAAACTACCCCGCTTCT 60.376 57.895 0.00 0.00 0.00 2.85
951 1448 3.873801 GCAGAGGAGGCCATTCTTTACAA 60.874 47.826 5.01 0.00 0.00 2.41
953 1450 3.017442 GAGGAGGCCATTCTTTACAACC 58.983 50.000 5.01 0.00 0.00 3.77
954 1451 1.743394 GGAGGCCATTCTTTACAACCG 59.257 52.381 5.01 0.00 0.00 4.44
973 1492 1.076632 GGAGGAGGAGAAGGCGAGA 60.077 63.158 0.00 0.00 0.00 4.04
1120 1651 2.824041 CCATGCCCAGGTACGTGC 60.824 66.667 10.09 0.00 0.00 5.34
1121 1652 3.195002 CATGCCCAGGTACGTGCG 61.195 66.667 10.09 2.90 0.00 5.34
1166 1697 2.634982 TGCATTCCGTTTCTTGATGC 57.365 45.000 0.00 0.00 0.00 3.91
1167 1698 1.885233 TGCATTCCGTTTCTTGATGCA 59.115 42.857 5.31 5.31 40.64 3.96
1168 1699 2.253603 GCATTCCGTTTCTTGATGCAC 58.746 47.619 0.00 0.00 34.12 4.57
1172 1703 0.523072 CCGTTTCTTGATGCACCCAG 59.477 55.000 0.00 0.00 0.00 4.45
1212 1745 2.580783 AGGGGTTATATATTGGCCGCAT 59.419 45.455 0.00 0.00 35.04 4.73
1231 1764 7.775729 CCGCATATTACGGTTAAATTGATTC 57.224 36.000 5.88 0.00 45.70 2.52
1232 1765 7.581476 CCGCATATTACGGTTAAATTGATTCT 58.419 34.615 5.88 0.00 45.70 2.40
1233 1766 7.533900 CCGCATATTACGGTTAAATTGATTCTG 59.466 37.037 5.88 0.00 45.70 3.02
1234 1767 7.533900 CGCATATTACGGTTAAATTGATTCTGG 59.466 37.037 0.00 0.00 0.00 3.86
1235 1768 8.564574 GCATATTACGGTTAAATTGATTCTGGA 58.435 33.333 0.00 0.00 0.00 3.86
1256 1789 7.611855 TCTGGATTCCTGTTTTTCTCTTAATCC 59.388 37.037 3.95 0.00 40.88 3.01
1356 1897 7.389232 GTGGAAATTCCCTTTTCTGAATCATT 58.611 34.615 9.87 0.00 35.03 2.57
1358 1899 9.270707 TGGAAATTCCCTTTTCTGAATCATTAT 57.729 29.630 9.87 0.00 35.03 1.28
1363 1904 7.281040 TCCCTTTTCTGAATCATTATCATGC 57.719 36.000 0.00 0.00 0.00 4.06
1369 1910 5.233225 TCTGAATCATTATCATGCTCCGTC 58.767 41.667 0.00 0.00 0.00 4.79
1421 1963 2.899900 GGGATTATGGGGCAGGAATTTC 59.100 50.000 0.00 0.00 0.00 2.17
1566 2191 4.223700 TCTGTTACTACTAGACCGGACAGA 59.776 45.833 9.46 10.01 39.70 3.41
1576 2201 1.299620 CCGGACAGACGTCGTGTTT 60.300 57.895 17.71 0.00 43.61 2.83
1685 2314 9.856488 ATGGTACGATGCTTAATTACTAGTATG 57.144 33.333 2.79 0.00 0.00 2.39
1703 2332 1.178276 TGTTTGGAAACGTGGTGCTT 58.822 45.000 0.00 0.00 41.74 3.91
1704 2333 1.133407 TGTTTGGAAACGTGGTGCTTC 59.867 47.619 0.00 0.00 41.74 3.86
1705 2334 1.133407 GTTTGGAAACGTGGTGCTTCA 59.867 47.619 0.00 0.00 0.00 3.02
1706 2335 1.686355 TTGGAAACGTGGTGCTTCAT 58.314 45.000 0.00 0.00 0.00 2.57
1707 2336 2.552599 TGGAAACGTGGTGCTTCATA 57.447 45.000 0.00 0.00 0.00 2.15
1708 2337 2.852449 TGGAAACGTGGTGCTTCATAA 58.148 42.857 0.00 0.00 0.00 1.90
1709 2338 3.215151 TGGAAACGTGGTGCTTCATAAA 58.785 40.909 0.00 0.00 0.00 1.40
1742 2371 5.324784 TGTAACAGTGGAGCTATGTGTAG 57.675 43.478 0.00 0.00 0.00 2.74
1912 2834 3.130516 TCAACACGTTCTTCAGTGAGACT 59.869 43.478 2.42 0.00 40.56 3.24
1969 2891 0.773644 ACCTTGAGCCCACTGTCATT 59.226 50.000 0.00 0.00 0.00 2.57
2062 2984 0.601841 CTAACAACTTCGCCCGTGGT 60.602 55.000 0.00 0.00 0.00 4.16
2171 5663 8.412456 TGATTATATTTGTGTAATGCAGTTGGG 58.588 33.333 0.00 0.00 0.00 4.12
2321 5813 2.298593 GCGCCTCTCGGTTGATTAC 58.701 57.895 0.00 0.00 38.94 1.89
2393 5885 5.811613 ACAACTTGTTCATGAACCATTGTTG 59.188 36.000 32.37 32.37 40.46 3.33
2425 5933 7.698628 TGTGTGTGTTATTTCAGAAAATTCGA 58.301 30.769 0.00 0.00 36.49 3.71
2449 6000 8.979574 CGAGTATTATCCAGTCTGGTTTAATTC 58.020 37.037 23.16 19.88 39.03 2.17
2451 6002 9.838339 AGTATTATCCAGTCTGGTTTAATTCTG 57.162 33.333 23.16 0.00 39.03 3.02
2452 6003 9.614792 GTATTATCCAGTCTGGTTTAATTCTGT 57.385 33.333 23.16 10.97 39.03 3.41
2458 6009 7.824289 TCCAGTCTGGTTTAATTCTGTATTCTG 59.176 37.037 18.65 0.00 39.03 3.02
2459 6010 7.414540 CCAGTCTGGTTTAATTCTGTATTCTGC 60.415 40.741 11.09 0.00 31.35 4.26
2484 6035 6.613153 AGAGGATGTTGTCTTTAAGCTAGT 57.387 37.500 0.00 0.00 0.00 2.57
2498 6049 9.167311 TCTTTAAGCTAGTTCTTCCATCATTTC 57.833 33.333 0.00 0.00 0.00 2.17
2544 6095 5.418676 TGAAAAGCTAAAATGCTAATGCCC 58.581 37.500 0.00 0.00 43.24 5.36
2545 6096 5.187576 TGAAAAGCTAAAATGCTAATGCCCT 59.812 36.000 0.00 0.00 43.24 5.19
2547 6098 3.902218 AGCTAAAATGCTAATGCCCTGA 58.098 40.909 0.00 0.00 42.10 3.86
2549 6100 4.897670 AGCTAAAATGCTAATGCCCTGATT 59.102 37.500 0.00 0.00 42.10 2.57
2676 6256 4.672587 TGTGAGTAGGTTATCTGCATCC 57.327 45.455 0.00 0.00 0.00 3.51
2694 6274 0.400213 CCTAGCTGTTGTGGGGACAA 59.600 55.000 0.00 0.00 46.06 3.18
2714 6294 7.174946 GGGACAATATGGGTAGATATGTTGTTG 59.825 40.741 0.00 0.00 38.29 3.33
2733 6316 5.229423 TGTTGCATTATTTTCAGTTCAGCC 58.771 37.500 0.00 0.00 0.00 4.85
2745 6328 6.753913 TTCAGTTCAGCCTATCATTATCCT 57.246 37.500 0.00 0.00 0.00 3.24
2747 6330 7.855784 TCAGTTCAGCCTATCATTATCCTTA 57.144 36.000 0.00 0.00 0.00 2.69
2749 6332 8.316946 TCAGTTCAGCCTATCATTATCCTTATG 58.683 37.037 0.00 0.00 0.00 1.90
2863 6459 3.305720 TGTTGCGGTCCTCCTAGATAAT 58.694 45.455 0.00 0.00 0.00 1.28
3139 6735 1.202976 ACCAATGCTGTCTTTGAGCCT 60.203 47.619 0.00 0.00 35.43 4.58
3441 7049 0.035056 GCATCAACTACCAGCCACCT 60.035 55.000 0.00 0.00 0.00 4.00
3447 7055 1.218316 CTACCAGCCACCTTCCGTC 59.782 63.158 0.00 0.00 0.00 4.79
3480 7088 1.898574 CCTGGCAAAGGTTCAGCGT 60.899 57.895 0.00 0.00 41.74 5.07
3507 7115 1.270274 TGCATGATCAGCAACAACACC 59.730 47.619 14.81 0.00 39.39 4.16
3777 7385 7.982354 GGCTTTGATCTGTATACTCAGTAAGTT 59.018 37.037 4.17 0.00 39.55 2.66
3781 7389 9.871238 TTGATCTGTATACTCAGTAAGTTTTCC 57.129 33.333 4.17 0.00 39.55 3.13
3782 7390 8.188799 TGATCTGTATACTCAGTAAGTTTTCCG 58.811 37.037 4.17 0.00 39.55 4.30
3950 7566 2.346803 TCTGAGCCGAACTGCAAATAC 58.653 47.619 0.00 0.00 0.00 1.89
3962 7578 7.491372 CCGAACTGCAAATACTGTTCTCTAATA 59.509 37.037 11.16 0.00 42.83 0.98
4018 7639 9.755804 TCTATTTATTGACTTATCTGCTGAGTG 57.244 33.333 0.00 0.00 0.00 3.51
4022 7643 5.722021 TTGACTTATCTGCTGAGTGTACA 57.278 39.130 0.00 0.00 0.00 2.90
4023 7644 5.921962 TGACTTATCTGCTGAGTGTACAT 57.078 39.130 0.00 0.00 0.00 2.29
4024 7645 5.654497 TGACTTATCTGCTGAGTGTACATG 58.346 41.667 0.00 0.00 0.00 3.21
4025 7646 4.437239 ACTTATCTGCTGAGTGTACATGC 58.563 43.478 0.00 2.58 0.00 4.06
4026 7647 2.322355 ATCTGCTGAGTGTACATGCC 57.678 50.000 0.00 0.00 0.00 4.40
4027 7648 0.250234 TCTGCTGAGTGTACATGCCC 59.750 55.000 0.00 0.00 0.00 5.36
4028 7649 0.745845 CTGCTGAGTGTACATGCCCC 60.746 60.000 0.00 0.00 0.00 5.80
4029 7650 1.200760 TGCTGAGTGTACATGCCCCT 61.201 55.000 0.00 0.00 0.00 4.79
4030 7651 0.035056 GCTGAGTGTACATGCCCCTT 60.035 55.000 0.00 0.00 0.00 3.95
4031 7652 1.742761 CTGAGTGTACATGCCCCTTG 58.257 55.000 0.00 0.00 0.00 3.61
4032 7653 1.003580 CTGAGTGTACATGCCCCTTGT 59.996 52.381 0.00 0.00 0.00 3.16
4033 7654 2.236146 CTGAGTGTACATGCCCCTTGTA 59.764 50.000 0.00 0.00 0.00 2.41
4034 7655 2.027561 TGAGTGTACATGCCCCTTGTAC 60.028 50.000 0.00 12.01 46.18 2.90
4040 7661 3.281727 ACATGCCCCTTGTACTGTATG 57.718 47.619 0.00 0.00 0.00 2.39
4046 7667 3.430929 GCCCCTTGTACTGTATGTCTGAG 60.431 52.174 0.00 0.00 0.00 3.35
4073 7694 5.188751 ACTGAAATGTGGAAACCCTGAAAAA 59.811 36.000 0.00 0.00 0.00 1.94
4092 7713 4.600692 AAAAGGTTTGCATCTTGTACCC 57.399 40.909 0.00 0.00 0.00 3.69
4093 7714 2.969821 AGGTTTGCATCTTGTACCCA 57.030 45.000 0.00 0.00 0.00 4.51
4094 7715 3.456380 AGGTTTGCATCTTGTACCCAT 57.544 42.857 0.00 0.00 0.00 4.00
4095 7716 3.778265 AGGTTTGCATCTTGTACCCATT 58.222 40.909 0.00 0.00 0.00 3.16
4096 7717 3.511146 AGGTTTGCATCTTGTACCCATTG 59.489 43.478 0.00 0.00 0.00 2.82
4097 7718 3.509575 GGTTTGCATCTTGTACCCATTGA 59.490 43.478 0.00 0.00 0.00 2.57
4098 7719 4.160252 GGTTTGCATCTTGTACCCATTGAT 59.840 41.667 0.00 0.00 0.00 2.57
4099 7720 5.359576 GGTTTGCATCTTGTACCCATTGATA 59.640 40.000 0.00 0.00 0.00 2.15
4100 7721 6.127479 GGTTTGCATCTTGTACCCATTGATAA 60.127 38.462 0.00 0.00 0.00 1.75
4101 7722 6.698008 TTGCATCTTGTACCCATTGATAAG 57.302 37.500 0.00 0.00 0.00 1.73
4102 7723 5.132502 TGCATCTTGTACCCATTGATAAGG 58.867 41.667 0.00 0.00 0.00 2.69
4103 7724 5.133221 GCATCTTGTACCCATTGATAAGGT 58.867 41.667 0.00 0.00 37.69 3.50
4104 7725 5.594317 GCATCTTGTACCCATTGATAAGGTT 59.406 40.000 0.00 0.00 35.02 3.50
4105 7726 6.460123 GCATCTTGTACCCATTGATAAGGTTG 60.460 42.308 0.00 0.00 35.02 3.77
4106 7727 6.134535 TCTTGTACCCATTGATAAGGTTGT 57.865 37.500 0.00 0.00 35.02 3.32
4118 7739 5.009631 TGATAAGGTTGTGTTTCCATCTGG 58.990 41.667 0.00 0.00 0.00 3.86
4172 7793 1.808343 GCGGTTGGTAAGTTTGGTAGG 59.192 52.381 0.00 0.00 0.00 3.18
4232 7853 0.933097 CGGTTCCAAGATCGCTGATG 59.067 55.000 0.00 0.00 0.00 3.07
4243 7864 4.774124 AGATCGCTGATGAAAGATTTCCA 58.226 39.130 3.00 0.00 36.36 3.53
4253 7874 7.202526 TGATGAAAGATTTCCAAAGTGTTGTC 58.797 34.615 3.00 0.00 36.36 3.18
4340 7967 5.190677 TCCCTCTTCTTTCTTTGAAAACGT 58.809 37.500 0.00 0.00 0.00 3.99
4362 7989 9.706691 AACGTGGTCATATATTAATCCTTACAG 57.293 33.333 0.00 0.00 0.00 2.74
4422 8051 0.245539 TGACGGTGTTACAGCCTAGC 59.754 55.000 9.04 0.00 0.00 3.42
4515 8146 1.485066 GACCCCACAACGTGATAGGAT 59.515 52.381 0.00 0.00 35.23 3.24
4520 8151 3.756434 CCCACAACGTGATAGGATGTTTT 59.244 43.478 0.00 0.00 35.23 2.43
4521 8152 4.217550 CCCACAACGTGATAGGATGTTTTT 59.782 41.667 0.00 0.00 35.23 1.94
4542 8176 1.686355 TTTGACAAGGCAACCGACAT 58.314 45.000 0.00 0.00 37.17 3.06
4543 8177 2.552599 TTGACAAGGCAACCGACATA 57.447 45.000 0.00 0.00 37.17 2.29
4575 8209 5.186409 ACAATGTGGCTAAGAATTTGAGCAT 59.814 36.000 8.78 0.00 37.98 3.79
4590 8224 3.343617 TGAGCATGTAAGGTAAGCCAAC 58.656 45.455 0.00 0.00 37.19 3.77
4608 8242 4.985413 CCAACTGTGGCAAATATAGTGTG 58.015 43.478 0.00 0.00 38.35 3.82
4609 8243 4.142403 CCAACTGTGGCAAATATAGTGTGG 60.142 45.833 0.00 0.00 38.35 4.17
4610 8244 4.301072 ACTGTGGCAAATATAGTGTGGT 57.699 40.909 0.00 0.00 0.00 4.16
4611 8245 5.429681 ACTGTGGCAAATATAGTGTGGTA 57.570 39.130 0.00 0.00 0.00 3.25
4612 8246 5.811190 ACTGTGGCAAATATAGTGTGGTAA 58.189 37.500 0.00 0.00 0.00 2.85
4613 8247 6.242396 ACTGTGGCAAATATAGTGTGGTAAA 58.758 36.000 0.00 0.00 0.00 2.01
4614 8248 6.889722 ACTGTGGCAAATATAGTGTGGTAAAT 59.110 34.615 0.00 0.00 0.00 1.40
4615 8249 7.396055 ACTGTGGCAAATATAGTGTGGTAAATT 59.604 33.333 0.00 0.00 0.00 1.82
4616 8250 8.809468 TGTGGCAAATATAGTGTGGTAAATTA 57.191 30.769 0.00 0.00 0.00 1.40
4617 8251 9.415008 TGTGGCAAATATAGTGTGGTAAATTAT 57.585 29.630 0.00 0.00 0.00 1.28
4618 8252 9.677567 GTGGCAAATATAGTGTGGTAAATTATG 57.322 33.333 0.00 0.00 0.00 1.90
4619 8253 8.855110 TGGCAAATATAGTGTGGTAAATTATGG 58.145 33.333 0.00 0.00 0.00 2.74
4620 8254 8.856103 GGCAAATATAGTGTGGTAAATTATGGT 58.144 33.333 0.00 0.00 0.00 3.55
4659 8293 8.527567 TTTTGTGACCTTGTTAAGAAAAGTTG 57.472 30.769 0.00 0.00 0.00 3.16
4660 8294 6.202516 TGTGACCTTGTTAAGAAAAGTTGG 57.797 37.500 0.00 0.00 0.00 3.77
4661 8295 5.946972 TGTGACCTTGTTAAGAAAAGTTGGA 59.053 36.000 0.00 0.00 0.00 3.53
4662 8296 6.434652 TGTGACCTTGTTAAGAAAAGTTGGAA 59.565 34.615 0.00 0.00 0.00 3.53
4663 8297 7.039644 TGTGACCTTGTTAAGAAAAGTTGGAAA 60.040 33.333 0.00 0.00 0.00 3.13
4676 8310 3.886324 TGGAAACAAACCGACCACT 57.114 47.368 0.00 0.00 37.44 4.00
4678 8312 2.841215 TGGAAACAAACCGACCACTAG 58.159 47.619 0.00 0.00 37.44 2.57
4679 8313 1.534163 GGAAACAAACCGACCACTAGC 59.466 52.381 0.00 0.00 0.00 3.42
4680 8314 2.490991 GAAACAAACCGACCACTAGCT 58.509 47.619 0.00 0.00 0.00 3.32
4681 8315 3.555586 GGAAACAAACCGACCACTAGCTA 60.556 47.826 0.00 0.00 0.00 3.32
4682 8316 3.756933 AACAAACCGACCACTAGCTAA 57.243 42.857 0.00 0.00 0.00 3.09
4683 8317 3.975168 ACAAACCGACCACTAGCTAAT 57.025 42.857 0.00 0.00 0.00 1.73
4684 8318 5.410355 AACAAACCGACCACTAGCTAATA 57.590 39.130 0.00 0.00 0.00 0.98
4685 8319 5.609533 ACAAACCGACCACTAGCTAATAT 57.390 39.130 0.00 0.00 0.00 1.28
4686 8320 5.985911 ACAAACCGACCACTAGCTAATATT 58.014 37.500 0.00 0.00 0.00 1.28
4687 8321 6.412214 ACAAACCGACCACTAGCTAATATTT 58.588 36.000 0.00 0.00 0.00 1.40
4688 8322 6.537660 ACAAACCGACCACTAGCTAATATTTC 59.462 38.462 0.00 0.00 0.00 2.17
4689 8323 5.864418 ACCGACCACTAGCTAATATTTCA 57.136 39.130 0.00 0.00 0.00 2.69
4690 8324 5.598769 ACCGACCACTAGCTAATATTTCAC 58.401 41.667 0.00 0.00 0.00 3.18
4691 8325 5.128171 ACCGACCACTAGCTAATATTTCACA 59.872 40.000 0.00 0.00 0.00 3.58
4692 8326 5.462398 CCGACCACTAGCTAATATTTCACAC 59.538 44.000 0.00 0.00 0.00 3.82
4693 8327 6.273825 CGACCACTAGCTAATATTTCACACT 58.726 40.000 0.00 0.00 0.00 3.55
4694 8328 6.757010 CGACCACTAGCTAATATTTCACACTT 59.243 38.462 0.00 0.00 0.00 3.16
4695 8329 7.254117 CGACCACTAGCTAATATTTCACACTTG 60.254 40.741 0.00 0.00 0.00 3.16
4696 8330 6.316390 ACCACTAGCTAATATTTCACACTTGC 59.684 38.462 0.00 0.00 0.00 4.01
4697 8331 6.238484 CCACTAGCTAATATTTCACACTTGCC 60.238 42.308 0.00 0.00 0.00 4.52
4698 8332 6.316140 CACTAGCTAATATTTCACACTTGCCA 59.684 38.462 0.00 0.00 0.00 4.92
4699 8333 6.884295 ACTAGCTAATATTTCACACTTGCCAA 59.116 34.615 0.00 0.00 0.00 4.52
4700 8334 5.954335 AGCTAATATTTCACACTTGCCAAC 58.046 37.500 0.00 0.00 0.00 3.77
4701 8335 5.711976 AGCTAATATTTCACACTTGCCAACT 59.288 36.000 0.00 0.00 0.00 3.16
4702 8336 6.209391 AGCTAATATTTCACACTTGCCAACTT 59.791 34.615 0.00 0.00 0.00 2.66
4703 8337 6.868339 GCTAATATTTCACACTTGCCAACTTT 59.132 34.615 0.00 0.00 0.00 2.66
4704 8338 7.384932 GCTAATATTTCACACTTGCCAACTTTT 59.615 33.333 0.00 0.00 0.00 2.27
4705 8339 9.260002 CTAATATTTCACACTTGCCAACTTTTT 57.740 29.630 0.00 0.00 0.00 1.94
4706 8340 5.799681 ATTTCACACTTGCCAACTTTTTG 57.200 34.783 0.00 0.00 0.00 2.44
4707 8341 3.951775 TCACACTTGCCAACTTTTTGT 57.048 38.095 0.00 0.00 0.00 2.83
4708 8342 5.392767 TTCACACTTGCCAACTTTTTGTA 57.607 34.783 0.00 0.00 0.00 2.41
4709 8343 5.590530 TCACACTTGCCAACTTTTTGTAT 57.409 34.783 0.00 0.00 0.00 2.29
4710 8344 5.971763 TCACACTTGCCAACTTTTTGTATT 58.028 33.333 0.00 0.00 0.00 1.89
4711 8345 7.101652 TCACACTTGCCAACTTTTTGTATTA 57.898 32.000 0.00 0.00 0.00 0.98
4712 8346 7.548097 TCACACTTGCCAACTTTTTGTATTAA 58.452 30.769 0.00 0.00 0.00 1.40
4713 8347 8.035394 TCACACTTGCCAACTTTTTGTATTAAA 58.965 29.630 0.00 0.00 0.00 1.52
4714 8348 8.825745 CACACTTGCCAACTTTTTGTATTAAAT 58.174 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.984764 CGACATAAATAAAGGAATCAACCGATA 58.015 33.333 0.00 0.00 34.73 2.92
11 12 7.042950 TCGACATAAATAAAGGAATCAACCGA 58.957 34.615 0.00 0.00 34.73 4.69
12 13 7.241663 TCGACATAAATAAAGGAATCAACCG 57.758 36.000 0.00 0.00 34.73 4.44
27 28 9.590451 ACCTCGTTTCTTATTTATCGACATAAA 57.410 29.630 0.00 0.00 38.56 1.40
28 29 9.590451 AACCTCGTTTCTTATTTATCGACATAA 57.410 29.630 0.00 0.00 0.00 1.90
29 30 9.027129 CAACCTCGTTTCTTATTTATCGACATA 57.973 33.333 0.00 0.00 0.00 2.29
30 31 7.548075 ACAACCTCGTTTCTTATTTATCGACAT 59.452 33.333 0.00 0.00 0.00 3.06
31 32 6.869913 ACAACCTCGTTTCTTATTTATCGACA 59.130 34.615 0.00 0.00 0.00 4.35
32 33 7.287050 ACAACCTCGTTTCTTATTTATCGAC 57.713 36.000 0.00 0.00 0.00 4.20
33 34 6.252015 CGACAACCTCGTTTCTTATTTATCGA 59.748 38.462 0.00 0.00 37.64 3.59
34 35 6.400422 CGACAACCTCGTTTCTTATTTATCG 58.600 40.000 0.00 0.00 37.64 2.92
49 50 1.127951 CGGTGCATTAACGACAACCTC 59.872 52.381 0.00 0.00 0.00 3.85
50 51 1.153353 CGGTGCATTAACGACAACCT 58.847 50.000 0.00 0.00 0.00 3.50
51 52 0.453782 GCGGTGCATTAACGACAACC 60.454 55.000 7.14 0.00 0.00 3.77
52 53 0.787908 CGCGGTGCATTAACGACAAC 60.788 55.000 0.00 0.00 0.00 3.32
53 54 1.493750 CGCGGTGCATTAACGACAA 59.506 52.632 0.00 0.00 0.00 3.18
54 55 3.017656 GCGCGGTGCATTAACGACA 62.018 57.895 8.83 0.00 45.45 4.35
55 56 2.276430 GCGCGGTGCATTAACGAC 60.276 61.111 8.83 0.00 45.45 4.34
64 65 2.125202 AAAACACTTAGGCGCGGTGC 62.125 55.000 8.83 4.64 45.38 5.01
65 66 0.385473 CAAAACACTTAGGCGCGGTG 60.385 55.000 8.83 9.75 37.05 4.94
66 67 1.512156 CCAAAACACTTAGGCGCGGT 61.512 55.000 8.83 0.00 0.00 5.68
67 68 1.209127 CCAAAACACTTAGGCGCGG 59.791 57.895 8.83 0.00 0.00 6.46
68 69 1.209127 CCCAAAACACTTAGGCGCG 59.791 57.895 0.00 0.00 0.00 6.86
69 70 1.173913 ATCCCAAAACACTTAGGCGC 58.826 50.000 0.00 0.00 0.00 6.53
70 71 5.576447 AATAATCCCAAAACACTTAGGCG 57.424 39.130 0.00 0.00 0.00 5.52
71 72 6.930731 TCAAATAATCCCAAAACACTTAGGC 58.069 36.000 0.00 0.00 0.00 3.93
72 73 9.942850 AAATCAAATAATCCCAAAACACTTAGG 57.057 29.630 0.00 0.00 0.00 2.69
99 100 9.053840 CGTCTAGGTGTATAAGTCATCTTAAGA 57.946 37.037 7.82 7.82 39.23 2.10
100 101 8.291032 CCGTCTAGGTGTATAAGTCATCTTAAG 58.709 40.741 0.00 0.00 36.18 1.85
101 102 7.994911 TCCGTCTAGGTGTATAAGTCATCTTAA 59.005 37.037 0.00 0.00 39.11 1.85
102 103 7.512130 TCCGTCTAGGTGTATAAGTCATCTTA 58.488 38.462 0.00 0.00 41.99 2.10
103 104 6.363065 TCCGTCTAGGTGTATAAGTCATCTT 58.637 40.000 0.00 0.00 41.99 2.40
104 105 5.938279 TCCGTCTAGGTGTATAAGTCATCT 58.062 41.667 0.00 0.00 41.99 2.90
105 106 5.181622 CCTCCGTCTAGGTGTATAAGTCATC 59.818 48.000 0.00 0.00 41.99 2.92
106 107 5.071370 CCTCCGTCTAGGTGTATAAGTCAT 58.929 45.833 0.00 0.00 41.99 3.06
107 108 4.458397 CCTCCGTCTAGGTGTATAAGTCA 58.542 47.826 0.00 0.00 41.99 3.41
108 109 3.819902 CCCTCCGTCTAGGTGTATAAGTC 59.180 52.174 0.00 0.00 41.99 3.01
109 110 3.461085 TCCCTCCGTCTAGGTGTATAAGT 59.539 47.826 0.00 0.00 41.99 2.24
110 111 4.073549 CTCCCTCCGTCTAGGTGTATAAG 58.926 52.174 0.00 0.00 41.99 1.73
111 112 3.461085 ACTCCCTCCGTCTAGGTGTATAA 59.539 47.826 0.00 0.00 41.99 0.98
112 113 3.051581 ACTCCCTCCGTCTAGGTGTATA 58.948 50.000 0.00 0.00 41.99 1.47
113 114 1.851653 ACTCCCTCCGTCTAGGTGTAT 59.148 52.381 0.00 0.00 41.99 2.29
114 115 1.293062 ACTCCCTCCGTCTAGGTGTA 58.707 55.000 0.00 0.00 41.99 2.90
115 116 1.064832 GTACTCCCTCCGTCTAGGTGT 60.065 57.143 0.00 0.00 41.99 4.16
116 117 1.212441 AGTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
117 118 1.594129 AGTACTCCCTCCGTCTAGGT 58.406 55.000 0.00 0.00 41.99 3.08
118 119 3.853355 TTAGTACTCCCTCCGTCTAGG 57.147 52.381 0.00 0.00 42.97 3.02
119 120 4.779696 ACTTTAGTACTCCCTCCGTCTAG 58.220 47.826 0.00 0.00 0.00 2.43
120 121 4.851639 ACTTTAGTACTCCCTCCGTCTA 57.148 45.455 0.00 0.00 0.00 2.59
121 122 3.735720 ACTTTAGTACTCCCTCCGTCT 57.264 47.619 0.00 0.00 0.00 4.18
122 123 4.702131 TGTAACTTTAGTACTCCCTCCGTC 59.298 45.833 0.00 0.00 0.00 4.79
123 124 4.666512 TGTAACTTTAGTACTCCCTCCGT 58.333 43.478 0.00 0.00 0.00 4.69
124 125 5.589192 CATGTAACTTTAGTACTCCCTCCG 58.411 45.833 0.00 0.00 0.00 4.63
125 126 5.358090 GCATGTAACTTTAGTACTCCCTCC 58.642 45.833 0.00 0.00 0.00 4.30
126 127 5.358090 GGCATGTAACTTTAGTACTCCCTC 58.642 45.833 0.00 0.00 0.00 4.30
127 128 4.142004 CGGCATGTAACTTTAGTACTCCCT 60.142 45.833 0.00 0.00 0.00 4.20
128 129 4.117685 CGGCATGTAACTTTAGTACTCCC 58.882 47.826 0.00 0.00 0.00 4.30
129 130 3.554731 GCGGCATGTAACTTTAGTACTCC 59.445 47.826 0.00 0.00 0.00 3.85
130 131 3.554731 GGCGGCATGTAACTTTAGTACTC 59.445 47.826 3.07 0.00 0.00 2.59
131 132 3.055675 TGGCGGCATGTAACTTTAGTACT 60.056 43.478 7.97 0.00 0.00 2.73
132 133 3.264104 TGGCGGCATGTAACTTTAGTAC 58.736 45.455 7.97 0.00 0.00 2.73
133 134 3.613494 TGGCGGCATGTAACTTTAGTA 57.387 42.857 7.97 0.00 0.00 1.82
134 135 2.483014 TGGCGGCATGTAACTTTAGT 57.517 45.000 7.97 0.00 0.00 2.24
135 136 3.840890 TTTGGCGGCATGTAACTTTAG 57.159 42.857 14.32 0.00 0.00 1.85
136 137 4.013728 AGATTTGGCGGCATGTAACTTTA 58.986 39.130 14.32 0.00 0.00 1.85
137 138 2.825532 AGATTTGGCGGCATGTAACTTT 59.174 40.909 14.32 0.00 0.00 2.66
138 139 2.446435 AGATTTGGCGGCATGTAACTT 58.554 42.857 14.32 0.00 0.00 2.66
139 140 2.128771 AGATTTGGCGGCATGTAACT 57.871 45.000 14.32 5.70 0.00 2.24
140 141 2.939460 AAGATTTGGCGGCATGTAAC 57.061 45.000 14.32 3.29 0.00 2.50
141 142 3.348119 TGTAAGATTTGGCGGCATGTAA 58.652 40.909 14.32 4.45 0.00 2.41
142 143 2.942376 CTGTAAGATTTGGCGGCATGTA 59.058 45.455 14.32 1.40 34.07 2.29
143 144 1.745087 CTGTAAGATTTGGCGGCATGT 59.255 47.619 14.32 4.06 34.07 3.21
144 145 2.016318 TCTGTAAGATTTGGCGGCATG 58.984 47.619 14.32 0.00 38.67 4.06
145 146 2.418368 TCTGTAAGATTTGGCGGCAT 57.582 45.000 14.32 0.00 38.67 4.40
146 147 2.192664 TTCTGTAAGATTTGGCGGCA 57.807 45.000 7.97 7.97 46.36 5.69
147 148 2.415491 GGTTTCTGTAAGATTTGGCGGC 60.415 50.000 0.00 0.00 46.36 6.53
148 149 2.817258 TGGTTTCTGTAAGATTTGGCGG 59.183 45.455 0.00 0.00 46.36 6.13
149 150 3.502211 AGTGGTTTCTGTAAGATTTGGCG 59.498 43.478 0.00 0.00 46.36 5.69
150 151 4.798574 CAGTGGTTTCTGTAAGATTTGGC 58.201 43.478 0.00 0.00 46.36 4.52
151 152 4.278170 TGCAGTGGTTTCTGTAAGATTTGG 59.722 41.667 0.00 0.00 46.36 3.28
152 153 5.437289 TGCAGTGGTTTCTGTAAGATTTG 57.563 39.130 0.00 0.00 46.36 2.32
153 154 5.183904 GGATGCAGTGGTTTCTGTAAGATTT 59.816 40.000 0.00 0.00 46.36 2.17
154 155 4.702131 GGATGCAGTGGTTTCTGTAAGATT 59.298 41.667 0.00 0.00 46.36 2.40
155 156 4.263462 TGGATGCAGTGGTTTCTGTAAGAT 60.263 41.667 0.00 0.00 46.36 2.40
156 157 3.072330 TGGATGCAGTGGTTTCTGTAAGA 59.928 43.478 0.00 0.00 44.68 2.10
157 158 3.411446 TGGATGCAGTGGTTTCTGTAAG 58.589 45.455 0.00 0.00 37.70 2.34
158 159 3.500448 TGGATGCAGTGGTTTCTGTAA 57.500 42.857 0.00 0.00 37.70 2.41
159 160 3.500448 TTGGATGCAGTGGTTTCTGTA 57.500 42.857 0.00 0.00 37.70 2.74
160 161 2.363306 TTGGATGCAGTGGTTTCTGT 57.637 45.000 0.00 0.00 37.70 3.41
161 162 3.367703 GGAATTGGATGCAGTGGTTTCTG 60.368 47.826 0.00 0.00 38.35 3.02
162 163 2.827921 GGAATTGGATGCAGTGGTTTCT 59.172 45.455 0.00 0.00 0.00 2.52
163 164 2.562298 TGGAATTGGATGCAGTGGTTTC 59.438 45.455 0.00 0.00 0.00 2.78
164 165 2.564062 CTGGAATTGGATGCAGTGGTTT 59.436 45.455 0.00 0.00 34.42 3.27
165 166 2.173519 CTGGAATTGGATGCAGTGGTT 58.826 47.619 0.00 0.00 34.42 3.67
166 167 1.843368 CTGGAATTGGATGCAGTGGT 58.157 50.000 0.00 0.00 34.42 4.16
170 171 1.546923 TGCAACTGGAATTGGATGCAG 59.453 47.619 0.00 0.00 43.62 4.41
171 172 1.630223 TGCAACTGGAATTGGATGCA 58.370 45.000 0.00 0.00 41.08 3.96
172 173 2.340337 GTTGCAACTGGAATTGGATGC 58.660 47.619 22.36 0.00 29.29 3.91
173 174 2.598589 CGTTGCAACTGGAATTGGATG 58.401 47.619 26.09 3.32 29.29 3.51
174 175 1.067635 GCGTTGCAACTGGAATTGGAT 60.068 47.619 26.09 0.00 29.29 3.41
175 176 0.313672 GCGTTGCAACTGGAATTGGA 59.686 50.000 26.09 0.00 0.00 3.53
176 177 0.031857 TGCGTTGCAACTGGAATTGG 59.968 50.000 26.09 9.92 34.76 3.16
177 178 1.130955 GTGCGTTGCAACTGGAATTG 58.869 50.000 26.09 10.63 41.47 2.32
178 179 0.743688 TGTGCGTTGCAACTGGAATT 59.256 45.000 26.09 0.00 41.47 2.17
179 180 0.311790 CTGTGCGTTGCAACTGGAAT 59.688 50.000 26.09 0.00 41.47 3.01
180 181 1.723608 CCTGTGCGTTGCAACTGGAA 61.724 55.000 26.09 4.48 41.47 3.53
181 182 2.186160 CCTGTGCGTTGCAACTGGA 61.186 57.895 26.09 17.74 41.47 3.86
182 183 2.332514 CCTGTGCGTTGCAACTGG 59.667 61.111 26.09 13.47 41.47 4.00
183 184 1.163420 TACCCTGTGCGTTGCAACTG 61.163 55.000 26.09 19.70 41.47 3.16
184 185 0.250727 ATACCCTGTGCGTTGCAACT 60.251 50.000 26.09 8.36 41.47 3.16
185 186 1.444836 TATACCCTGTGCGTTGCAAC 58.555 50.000 19.89 19.89 41.47 4.17
186 187 2.186532 TTATACCCTGTGCGTTGCAA 57.813 45.000 0.00 0.00 41.47 4.08
187 188 2.093181 AGATTATACCCTGTGCGTTGCA 60.093 45.455 0.00 0.00 35.60 4.08
188 189 2.544267 GAGATTATACCCTGTGCGTTGC 59.456 50.000 0.00 0.00 0.00 4.17
189 190 4.060038 AGAGATTATACCCTGTGCGTTG 57.940 45.455 0.00 0.00 0.00 4.10
190 191 4.894114 ACTAGAGATTATACCCTGTGCGTT 59.106 41.667 0.00 0.00 0.00 4.84
191 192 4.471548 ACTAGAGATTATACCCTGTGCGT 58.528 43.478 0.00 0.00 0.00 5.24
192 193 5.455056 AACTAGAGATTATACCCTGTGCG 57.545 43.478 0.00 0.00 0.00 5.34
214 215 5.046950 ACCAGCAACACAAACCTCTTAAAAA 60.047 36.000 0.00 0.00 0.00 1.94
215 216 4.464597 ACCAGCAACACAAACCTCTTAAAA 59.535 37.500 0.00 0.00 0.00 1.52
216 217 4.020543 ACCAGCAACACAAACCTCTTAAA 58.979 39.130 0.00 0.00 0.00 1.52
217 218 3.626930 ACCAGCAACACAAACCTCTTAA 58.373 40.909 0.00 0.00 0.00 1.85
218 219 3.290948 ACCAGCAACACAAACCTCTTA 57.709 42.857 0.00 0.00 0.00 2.10
219 220 2.143876 ACCAGCAACACAAACCTCTT 57.856 45.000 0.00 0.00 0.00 2.85
220 221 2.143876 AACCAGCAACACAAACCTCT 57.856 45.000 0.00 0.00 0.00 3.69
221 222 2.165437 TCAAACCAGCAACACAAACCTC 59.835 45.455 0.00 0.00 0.00 3.85
222 223 2.175202 TCAAACCAGCAACACAAACCT 58.825 42.857 0.00 0.00 0.00 3.50
223 224 2.663826 TCAAACCAGCAACACAAACC 57.336 45.000 0.00 0.00 0.00 3.27
224 225 5.752955 ACATAATCAAACCAGCAACACAAAC 59.247 36.000 0.00 0.00 0.00 2.93
225 226 5.752472 CACATAATCAAACCAGCAACACAAA 59.248 36.000 0.00 0.00 0.00 2.83
226 227 5.163468 ACACATAATCAAACCAGCAACACAA 60.163 36.000 0.00 0.00 0.00 3.33
227 228 4.340666 ACACATAATCAAACCAGCAACACA 59.659 37.500 0.00 0.00 0.00 3.72
228 229 4.681025 CACACATAATCAAACCAGCAACAC 59.319 41.667 0.00 0.00 0.00 3.32
229 230 4.795635 GCACACATAATCAAACCAGCAACA 60.796 41.667 0.00 0.00 0.00 3.33
230 231 3.674753 GCACACATAATCAAACCAGCAAC 59.325 43.478 0.00 0.00 0.00 4.17
231 232 3.573538 AGCACACATAATCAAACCAGCAA 59.426 39.130 0.00 0.00 0.00 3.91
232 233 3.156293 AGCACACATAATCAAACCAGCA 58.844 40.909 0.00 0.00 0.00 4.41
233 234 3.855689 AGCACACATAATCAAACCAGC 57.144 42.857 0.00 0.00 0.00 4.85
234 235 5.375417 TGAAGCACACATAATCAAACCAG 57.625 39.130 0.00 0.00 0.00 4.00
235 236 4.218200 CCTGAAGCACACATAATCAAACCA 59.782 41.667 0.00 0.00 0.00 3.67
236 237 4.458989 TCCTGAAGCACACATAATCAAACC 59.541 41.667 0.00 0.00 0.00 3.27
237 238 5.627499 TCCTGAAGCACACATAATCAAAC 57.373 39.130 0.00 0.00 0.00 2.93
238 239 6.839124 AATCCTGAAGCACACATAATCAAA 57.161 33.333 0.00 0.00 0.00 2.69
239 240 6.839124 AAATCCTGAAGCACACATAATCAA 57.161 33.333 0.00 0.00 0.00 2.57
240 241 7.936496 TTAAATCCTGAAGCACACATAATCA 57.064 32.000 0.00 0.00 0.00 2.57
241 242 9.241317 CATTTAAATCCTGAAGCACACATAATC 57.759 33.333 0.00 0.00 0.00 1.75
242 243 8.199449 CCATTTAAATCCTGAAGCACACATAAT 58.801 33.333 0.00 0.00 0.00 1.28
243 244 7.395772 TCCATTTAAATCCTGAAGCACACATAA 59.604 33.333 0.00 0.00 0.00 1.90
244 245 6.889177 TCCATTTAAATCCTGAAGCACACATA 59.111 34.615 0.00 0.00 0.00 2.29
245 246 5.716228 TCCATTTAAATCCTGAAGCACACAT 59.284 36.000 0.00 0.00 0.00 3.21
246 247 5.076182 TCCATTTAAATCCTGAAGCACACA 58.924 37.500 0.00 0.00 0.00 3.72
247 248 5.183904 ACTCCATTTAAATCCTGAAGCACAC 59.816 40.000 0.00 0.00 0.00 3.82
248 249 5.324409 ACTCCATTTAAATCCTGAAGCACA 58.676 37.500 0.00 0.00 0.00 4.57
249 250 5.904362 ACTCCATTTAAATCCTGAAGCAC 57.096 39.130 0.00 0.00 0.00 4.40
250 251 8.303876 GTTTTACTCCATTTAAATCCTGAAGCA 58.696 33.333 0.00 0.00 0.00 3.91
251 252 8.303876 TGTTTTACTCCATTTAAATCCTGAAGC 58.696 33.333 0.00 0.00 0.00 3.86
252 253 9.626045 GTGTTTTACTCCATTTAAATCCTGAAG 57.374 33.333 0.00 0.00 0.00 3.02
253 254 9.137459 TGTGTTTTACTCCATTTAAATCCTGAA 57.863 29.630 0.00 0.00 0.00 3.02
254 255 8.698973 TGTGTTTTACTCCATTTAAATCCTGA 57.301 30.769 0.00 0.00 0.00 3.86
255 256 8.792633 TCTGTGTTTTACTCCATTTAAATCCTG 58.207 33.333 0.00 0.00 0.00 3.86
256 257 8.934023 TCTGTGTTTTACTCCATTTAAATCCT 57.066 30.769 0.00 0.00 0.00 3.24
299 300 3.917300 ACTATCTTCCCTCGGTCTCATT 58.083 45.455 0.00 0.00 0.00 2.57
302 303 4.261698 GCTTTACTATCTTCCCTCGGTCTC 60.262 50.000 0.00 0.00 0.00 3.36
303 304 3.637694 GCTTTACTATCTTCCCTCGGTCT 59.362 47.826 0.00 0.00 0.00 3.85
305 306 2.361438 CGCTTTACTATCTTCCCTCGGT 59.639 50.000 0.00 0.00 0.00 4.69
308 309 4.875561 ATCCGCTTTACTATCTTCCCTC 57.124 45.455 0.00 0.00 0.00 4.30
313 314 6.493802 TCCTGACATATCCGCTTTACTATCTT 59.506 38.462 0.00 0.00 0.00 2.40
326 327 2.902486 TCTGCATCCTCCTGACATATCC 59.098 50.000 0.00 0.00 0.00 2.59
331 332 2.532250 TAGTCTGCATCCTCCTGACA 57.468 50.000 3.26 0.00 34.71 3.58
333 334 4.952957 GCTATATAGTCTGCATCCTCCTGA 59.047 45.833 11.38 0.00 0.00 3.86
346 347 7.799447 CGTTTCTACTCTGTGTGCTATATAGTC 59.201 40.741 11.38 4.71 0.00 2.59
347 348 7.498239 TCGTTTCTACTCTGTGTGCTATATAGT 59.502 37.037 11.38 0.00 0.00 2.12
401 402 1.858458 ACGCGATGATGTTATTGGTCG 59.142 47.619 15.93 0.00 0.00 4.79
404 405 2.124122 TCGACGCGATGATGTTATTGG 58.876 47.619 15.93 0.00 0.00 3.16
409 410 2.651701 GTATCTCGACGCGATGATGTT 58.348 47.619 15.93 0.47 34.61 2.71
432 433 3.931468 CACAATGTCACCTCTCTGATCAC 59.069 47.826 0.00 0.00 0.00 3.06
437 438 2.733552 CGAACACAATGTCACCTCTCTG 59.266 50.000 0.00 0.00 0.00 3.35
443 444 1.440353 GCGCGAACACAATGTCACC 60.440 57.895 12.10 0.00 0.00 4.02
447 448 1.163420 TTCTGGCGCGAACACAATGT 61.163 50.000 12.10 0.00 0.00 2.71
467 468 2.279784 GATTCGCTCTCTGGCCCG 60.280 66.667 0.00 0.00 0.00 6.13
469 470 1.294857 GAAAGATTCGCTCTCTGGCC 58.705 55.000 0.00 0.00 31.03 5.36
470 471 1.134551 AGGAAAGATTCGCTCTCTGGC 60.135 52.381 0.00 0.00 31.03 4.85
472 473 3.516981 TGAGGAAAGATTCGCTCTCTG 57.483 47.619 0.00 0.00 31.03 3.35
478 479 5.757850 AATGGTAATGAGGAAAGATTCGC 57.242 39.130 0.00 0.00 0.00 4.70
514 515 3.926058 ACCAGTAACACACACCTCTTT 57.074 42.857 0.00 0.00 0.00 2.52
529 530 6.986817 CACGAGGATCTATTAATCAAACCAGT 59.013 38.462 0.00 0.00 0.00 4.00
569 570 9.753674 ACCATTTTTATGAGACATCTTTTCCTA 57.246 29.630 0.00 0.00 0.00 2.94
570 571 8.655935 ACCATTTTTATGAGACATCTTTTCCT 57.344 30.769 0.00 0.00 0.00 3.36
595 617 5.071370 GGAGAGACAAGGAATCGGATACTA 58.929 45.833 0.00 0.00 0.00 1.82
603 625 7.504403 TGAATGAATAGGAGAGACAAGGAATC 58.496 38.462 0.00 0.00 0.00 2.52
653 675 8.625651 GCCATCGTCATCACTAATACTCTATAT 58.374 37.037 0.00 0.00 0.00 0.86
655 677 6.127591 GGCCATCGTCATCACTAATACTCTAT 60.128 42.308 0.00 0.00 0.00 1.98
656 678 5.183331 GGCCATCGTCATCACTAATACTCTA 59.817 44.000 0.00 0.00 0.00 2.43
657 679 4.021894 GGCCATCGTCATCACTAATACTCT 60.022 45.833 0.00 0.00 0.00 3.24
658 680 4.238514 GGCCATCGTCATCACTAATACTC 58.761 47.826 0.00 0.00 0.00 2.59
659 681 3.641436 TGGCCATCGTCATCACTAATACT 59.359 43.478 0.00 0.00 0.00 2.12
662 839 3.405831 CATGGCCATCGTCATCACTAAT 58.594 45.455 17.61 0.00 0.00 1.73
666 843 1.096967 TGCATGGCCATCGTCATCAC 61.097 55.000 17.61 0.00 0.00 3.06
668 845 0.240145 CATGCATGGCCATCGTCATC 59.760 55.000 17.61 1.56 0.00 2.92
669 846 1.802337 GCATGCATGGCCATCGTCAT 61.802 55.000 27.34 16.16 0.00 3.06
683 860 3.599792 AACGAACTGCTGCGCATGC 62.600 57.895 12.24 17.56 38.13 4.06
684 861 1.061799 GAAACGAACTGCTGCGCATG 61.062 55.000 12.24 6.51 38.13 4.06
685 862 1.207593 GAAACGAACTGCTGCGCAT 59.792 52.632 12.24 0.00 38.13 4.73
730 1214 3.176708 CCGATGGTACTAGTCACGTTTG 58.823 50.000 0.00 0.00 0.00 2.93
731 1215 2.821969 ACCGATGGTACTAGTCACGTTT 59.178 45.455 0.00 0.00 32.11 3.60
732 1216 2.440409 ACCGATGGTACTAGTCACGTT 58.560 47.619 0.00 0.00 32.11 3.99
733 1217 2.119801 ACCGATGGTACTAGTCACGT 57.880 50.000 0.00 0.00 32.11 4.49
734 1218 3.624861 AGTTACCGATGGTACTAGTCACG 59.375 47.826 0.00 0.00 37.97 4.35
735 1219 4.637534 TCAGTTACCGATGGTACTAGTCAC 59.362 45.833 0.00 0.00 37.97 3.67
736 1220 4.847198 TCAGTTACCGATGGTACTAGTCA 58.153 43.478 0.00 0.00 37.97 3.41
737 1221 5.124457 TGTTCAGTTACCGATGGTACTAGTC 59.876 44.000 0.00 0.00 37.97 2.59
738 1222 5.012239 TGTTCAGTTACCGATGGTACTAGT 58.988 41.667 0.00 0.00 37.97 2.57
739 1223 5.356190 TCTGTTCAGTTACCGATGGTACTAG 59.644 44.000 0.00 0.00 37.97 2.57
766 1250 4.980805 TGCACGTGAACCGGCTCC 62.981 66.667 22.23 0.00 42.24 4.70
853 1337 1.223211 GCAGAGGAGGGGAAGAAGC 59.777 63.158 0.00 0.00 0.00 3.86
854 1338 1.631071 GGGCAGAGGAGGGGAAGAAG 61.631 65.000 0.00 0.00 0.00 2.85
855 1339 1.616628 GGGCAGAGGAGGGGAAGAA 60.617 63.158 0.00 0.00 0.00 2.52
951 1448 2.364961 CCTTCTCCTCCTCCCGGT 59.635 66.667 0.00 0.00 0.00 5.28
953 1450 3.532155 CGCCTTCTCCTCCTCCCG 61.532 72.222 0.00 0.00 0.00 5.14
954 1451 2.042843 TCGCCTTCTCCTCCTCCC 60.043 66.667 0.00 0.00 0.00 4.30
973 1492 1.751162 CTCGCTCCCTTCCGTCTCT 60.751 63.158 0.00 0.00 0.00 3.10
1191 1722 1.989586 TGCGGCCAATATATAACCCCT 59.010 47.619 2.24 0.00 0.00 4.79
1192 1723 2.500392 TGCGGCCAATATATAACCCC 57.500 50.000 2.24 0.00 0.00 4.95
1195 1726 6.884187 CCGTAATATGCGGCCAATATATAAC 58.116 40.000 2.24 4.86 42.82 1.89
1229 1762 8.940397 ATTAAGAGAAAAACAGGAATCCAGAA 57.060 30.769 0.61 0.00 0.00 3.02
1230 1763 7.611855 GGATTAAGAGAAAAACAGGAATCCAGA 59.388 37.037 0.61 0.00 40.44 3.86
1231 1764 7.613411 AGGATTAAGAGAAAAACAGGAATCCAG 59.387 37.037 0.61 0.00 42.28 3.86
1232 1765 7.394359 CAGGATTAAGAGAAAAACAGGAATCCA 59.606 37.037 0.61 0.00 42.28 3.41
1233 1766 7.394641 ACAGGATTAAGAGAAAAACAGGAATCC 59.605 37.037 0.00 0.00 40.84 3.01
1234 1767 8.239998 CACAGGATTAAGAGAAAAACAGGAATC 58.760 37.037 0.00 0.00 0.00 2.52
1235 1768 7.725844 ACACAGGATTAAGAGAAAAACAGGAAT 59.274 33.333 0.00 0.00 0.00 3.01
1236 1769 7.060421 ACACAGGATTAAGAGAAAAACAGGAA 58.940 34.615 0.00 0.00 0.00 3.36
1286 1827 2.536803 GCAATTCGTAGGATTTACGCGA 59.463 45.455 15.93 0.00 40.40 5.87
1288 1829 2.536803 TCGCAATTCGTAGGATTTACGC 59.463 45.455 7.47 1.90 40.40 4.42
1356 1897 2.379005 ACAGACTGACGGAGCATGATA 58.621 47.619 10.08 0.00 0.00 2.15
1358 1899 1.472878 GTACAGACTGACGGAGCATGA 59.527 52.381 10.08 0.00 0.00 3.07
1363 1904 1.473278 GGGAAGTACAGACTGACGGAG 59.527 57.143 10.08 0.00 35.52 4.63
1369 1910 2.036733 TCCAAACGGGAAGTACAGACTG 59.963 50.000 0.00 0.00 44.80 3.51
1421 1963 1.594518 CGACAACCAGCAACACGAAAG 60.595 52.381 0.00 0.00 0.00 2.62
1520 2144 2.239907 ACAGAACATTCTTAGGGAGGCC 59.760 50.000 0.00 0.00 34.74 5.19
1521 2145 3.636153 ACAGAACATTCTTAGGGAGGC 57.364 47.619 0.00 0.00 34.74 4.70
1576 2201 6.646267 ACCAACTTCAGTACAGTCTACAAAA 58.354 36.000 0.00 0.00 0.00 2.44
1685 2314 1.133407 TGAAGCACCACGTTTCCAAAC 59.867 47.619 0.00 0.00 34.12 2.93
1708 2337 9.632638 AGCTCCACTGTTACAATATTTATGATT 57.367 29.630 0.00 0.00 0.00 2.57
1738 2367 2.566529 CGTGCTCAGTCCGCTACA 59.433 61.111 0.00 0.00 0.00 2.74
1742 2371 2.125512 AATCCGTGCTCAGTCCGC 60.126 61.111 0.00 0.00 0.00 5.54
2062 2984 8.590204 TGTTAAGATGAATTACCAGTGTAGTGA 58.410 33.333 0.00 0.00 0.00 3.41
2153 5346 3.320541 CCTTCCCAACTGCATTACACAAA 59.679 43.478 0.00 0.00 0.00 2.83
2171 5663 7.450014 TCCAGACATAGATCTACAATCTCCTTC 59.550 40.741 4.10 0.00 0.00 3.46
2321 5813 2.749621 ACCAAGCTTAGATTTCTTGCCG 59.250 45.455 0.00 0.00 36.72 5.69
2393 5885 9.509855 TTTCTGAAATAACACACACATTAACAC 57.490 29.630 0.00 0.00 0.00 3.32
2423 5929 8.888579 AATTAAACCAGACTGGATAATACTCG 57.111 34.615 28.56 0.00 40.96 4.18
2425 5933 9.838339 CAGAATTAAACCAGACTGGATAATACT 57.162 33.333 28.56 15.64 40.96 2.12
2433 5984 7.414540 GCAGAATACAGAATTAAACCAGACTGG 60.415 40.741 20.45 20.45 45.02 4.00
2449 6000 3.724508 ACATCCTCTCGCAGAATACAG 57.275 47.619 0.00 0.00 34.09 2.74
2451 6002 3.786635 ACAACATCCTCTCGCAGAATAC 58.213 45.455 0.00 0.00 34.09 1.89
2452 6003 3.701542 AGACAACATCCTCTCGCAGAATA 59.298 43.478 0.00 0.00 34.09 1.75
2453 6004 2.499289 AGACAACATCCTCTCGCAGAAT 59.501 45.455 0.00 0.00 34.09 2.40
2458 6009 3.062774 GCTTAAAGACAACATCCTCTCGC 59.937 47.826 0.00 0.00 0.00 5.03
2459 6010 4.499183 AGCTTAAAGACAACATCCTCTCG 58.501 43.478 0.00 0.00 0.00 4.04
2549 6100 9.599866 GTGCATGCTTTACAGATACCATATATA 57.400 33.333 20.33 0.00 0.00 0.86
2632 6212 0.250901 ACAGCCTGAATGGTCCACAC 60.251 55.000 0.00 0.00 38.35 3.82
2676 6256 2.496899 ATTGTCCCCACAACAGCTAG 57.503 50.000 0.00 0.00 45.47 3.42
2694 6274 9.979897 ATAATGCAACAACATATCTACCCATAT 57.020 29.630 0.00 0.00 0.00 1.78
2714 6294 7.031226 TGATAGGCTGAACTGAAAATAATGC 57.969 36.000 0.00 0.00 0.00 3.56
2745 6328 9.494271 GAAATACAGAGTGGCATAAGATCATAA 57.506 33.333 0.00 0.00 0.00 1.90
2747 6330 7.512130 TGAAATACAGAGTGGCATAAGATCAT 58.488 34.615 0.00 0.00 0.00 2.45
2863 6459 4.098501 CGGCATATGTCATAGATAGCCTCA 59.901 45.833 8.28 0.00 38.71 3.86
3139 6735 1.546923 CACTTGGCCATCATGCTTGAA 59.453 47.619 6.09 0.00 34.96 2.69
3639 7247 1.004394 TCGTAGTCCTTCTCCAGAGCA 59.996 52.381 0.00 0.00 0.00 4.26
3777 7385 5.804692 ATCAATATGTAACGCAACGGAAA 57.195 34.783 0.00 0.00 0.00 3.13
3779 7387 4.495019 GCAATCAATATGTAACGCAACGGA 60.495 41.667 0.00 0.00 0.00 4.69
3780 7388 3.723764 GCAATCAATATGTAACGCAACGG 59.276 43.478 0.00 0.00 0.00 4.44
3781 7389 4.434266 CAGCAATCAATATGTAACGCAACG 59.566 41.667 0.00 0.00 0.00 4.10
3782 7390 5.331902 ACAGCAATCAATATGTAACGCAAC 58.668 37.500 0.00 0.00 0.00 4.17
3950 7566 4.820897 TGGCACAGTGTATTAGAGAACAG 58.179 43.478 1.61 0.00 0.00 3.16
4020 7641 2.576191 ACATACAGTACAAGGGGCATGT 59.424 45.455 0.00 0.00 34.81 3.21
4022 7643 3.115390 AGACATACAGTACAAGGGGCAT 58.885 45.455 0.00 0.00 0.00 4.40
4023 7644 2.236146 CAGACATACAGTACAAGGGGCA 59.764 50.000 0.00 0.00 0.00 5.36
4024 7645 2.500098 TCAGACATACAGTACAAGGGGC 59.500 50.000 0.00 0.00 0.00 5.80
4025 7646 3.430929 GCTCAGACATACAGTACAAGGGG 60.431 52.174 0.00 0.00 0.00 4.79
4026 7647 3.430929 GGCTCAGACATACAGTACAAGGG 60.431 52.174 0.00 0.00 0.00 3.95
4027 7648 3.195610 TGGCTCAGACATACAGTACAAGG 59.804 47.826 0.00 0.00 0.00 3.61
4028 7649 4.081972 AGTGGCTCAGACATACAGTACAAG 60.082 45.833 0.00 0.00 0.00 3.16
4029 7650 3.832490 AGTGGCTCAGACATACAGTACAA 59.168 43.478 0.00 0.00 0.00 2.41
4030 7651 3.193479 CAGTGGCTCAGACATACAGTACA 59.807 47.826 0.00 0.00 0.00 2.90
4031 7652 3.444034 TCAGTGGCTCAGACATACAGTAC 59.556 47.826 0.00 0.00 0.00 2.73
4032 7653 3.697166 TCAGTGGCTCAGACATACAGTA 58.303 45.455 0.00 0.00 0.00 2.74
4033 7654 2.529632 TCAGTGGCTCAGACATACAGT 58.470 47.619 0.00 0.00 0.00 3.55
4034 7655 3.599730 TTCAGTGGCTCAGACATACAG 57.400 47.619 0.00 0.00 0.00 2.74
4073 7694 3.237268 TGGGTACAAGATGCAAACCTT 57.763 42.857 0.00 0.00 0.00 3.50
4074 7695 2.969821 TGGGTACAAGATGCAAACCT 57.030 45.000 0.00 0.00 0.00 3.50
4075 7696 3.509575 TCAATGGGTACAAGATGCAAACC 59.490 43.478 0.00 0.00 0.00 3.27
4076 7697 4.782019 TCAATGGGTACAAGATGCAAAC 57.218 40.909 0.00 0.00 0.00 2.93
4077 7698 6.096705 CCTTATCAATGGGTACAAGATGCAAA 59.903 38.462 0.00 0.00 30.92 3.68
4078 7699 5.593909 CCTTATCAATGGGTACAAGATGCAA 59.406 40.000 0.00 0.00 30.92 4.08
4079 7700 5.132502 CCTTATCAATGGGTACAAGATGCA 58.867 41.667 0.00 0.00 30.92 3.96
4080 7701 5.133221 ACCTTATCAATGGGTACAAGATGC 58.867 41.667 0.00 0.00 30.92 3.91
4081 7702 6.603201 ACAACCTTATCAATGGGTACAAGATG 59.397 38.462 0.00 0.00 32.50 2.90
4082 7703 6.603201 CACAACCTTATCAATGGGTACAAGAT 59.397 38.462 0.00 0.00 32.50 2.40
4083 7704 5.943416 CACAACCTTATCAATGGGTACAAGA 59.057 40.000 0.00 0.00 32.50 3.02
4084 7705 5.710099 ACACAACCTTATCAATGGGTACAAG 59.290 40.000 0.00 0.00 32.50 3.16
4085 7706 5.636123 ACACAACCTTATCAATGGGTACAA 58.364 37.500 0.00 0.00 32.50 2.41
4086 7707 5.249780 ACACAACCTTATCAATGGGTACA 57.750 39.130 0.00 0.00 32.50 2.90
4087 7708 6.349860 GGAAACACAACCTTATCAATGGGTAC 60.350 42.308 0.00 0.00 32.50 3.34
4088 7709 5.712917 GGAAACACAACCTTATCAATGGGTA 59.287 40.000 0.00 0.00 32.50 3.69
4089 7710 4.526650 GGAAACACAACCTTATCAATGGGT 59.473 41.667 0.00 0.00 34.47 4.51
4090 7711 4.526262 TGGAAACACAACCTTATCAATGGG 59.474 41.667 0.00 0.00 33.40 4.00
4091 7712 5.720371 TGGAAACACAACCTTATCAATGG 57.280 39.130 0.00 0.00 33.40 3.16
4118 7739 3.059570 GTCGTTCGATTCTGTCATGTGTC 59.940 47.826 0.00 0.00 0.00 3.67
4124 7745 1.883926 TCAGGTCGTTCGATTCTGTCA 59.116 47.619 19.15 6.93 0.00 3.58
4172 7793 3.426568 GCCTCAAGCGTCACCAGC 61.427 66.667 0.00 0.00 0.00 4.85
4232 7853 4.976116 CGGACAACACTTTGGAAATCTTTC 59.024 41.667 0.00 0.00 37.00 2.62
4243 7864 0.396811 CCTCCCTCGGACAACACTTT 59.603 55.000 0.00 0.00 0.00 2.66
4253 7874 4.410400 GGTTGGTGCCTCCCTCGG 62.410 72.222 0.00 0.00 34.77 4.63
4419 8048 1.895238 GGTAAGGTGAGGCACGCTA 59.105 57.895 0.00 0.00 34.83 4.26
4422 8051 2.125673 CCGGTAAGGTGAGGCACG 60.126 66.667 0.00 0.00 34.83 5.34
4521 8152 1.819288 TGTCGGTTGCCTTGTCAAAAA 59.181 42.857 0.00 0.00 0.00 1.94
4522 8153 1.464734 TGTCGGTTGCCTTGTCAAAA 58.535 45.000 0.00 0.00 0.00 2.44
4523 8154 1.686355 ATGTCGGTTGCCTTGTCAAA 58.314 45.000 0.00 0.00 0.00 2.69
4525 8156 2.422597 CTTATGTCGGTTGCCTTGTCA 58.577 47.619 0.00 0.00 0.00 3.58
4542 8176 4.224147 TCTTAGCCACATTGTAGGTGCTTA 59.776 41.667 7.36 0.31 34.94 3.09
4543 8177 3.009033 TCTTAGCCACATTGTAGGTGCTT 59.991 43.478 7.36 0.00 34.94 3.91
4575 8209 3.134574 CCACAGTTGGCTTACCTTACA 57.865 47.619 0.00 0.00 35.56 2.41
4590 8224 6.751514 TTTACCACACTATATTTGCCACAG 57.248 37.500 0.00 0.00 0.00 3.66
4633 8267 8.983724 CAACTTTTCTTAACAAGGTCACAAAAA 58.016 29.630 0.00 0.00 0.00 1.94
4634 8268 7.600752 CCAACTTTTCTTAACAAGGTCACAAAA 59.399 33.333 0.00 0.00 0.00 2.44
4635 8269 7.039644 TCCAACTTTTCTTAACAAGGTCACAAA 60.040 33.333 0.00 0.00 0.00 2.83
4636 8270 6.434652 TCCAACTTTTCTTAACAAGGTCACAA 59.565 34.615 0.00 0.00 0.00 3.33
4637 8271 5.946972 TCCAACTTTTCTTAACAAGGTCACA 59.053 36.000 0.00 0.00 0.00 3.58
4638 8272 6.445357 TCCAACTTTTCTTAACAAGGTCAC 57.555 37.500 0.00 0.00 0.00 3.67
4639 8273 7.039644 TGTTTCCAACTTTTCTTAACAAGGTCA 60.040 33.333 0.00 0.00 0.00 4.02
4640 8274 7.317390 TGTTTCCAACTTTTCTTAACAAGGTC 58.683 34.615 0.00 0.00 0.00 3.85
4641 8275 7.234661 TGTTTCCAACTTTTCTTAACAAGGT 57.765 32.000 0.00 0.00 0.00 3.50
4642 8276 8.440059 GTTTGTTTCCAACTTTTCTTAACAAGG 58.560 33.333 0.00 0.00 35.99 3.61
4643 8277 8.440059 GGTTTGTTTCCAACTTTTCTTAACAAG 58.560 33.333 0.00 0.00 35.99 3.16
4644 8278 7.116519 CGGTTTGTTTCCAACTTTTCTTAACAA 59.883 33.333 0.00 0.00 33.65 2.83
4645 8279 6.586844 CGGTTTGTTTCCAACTTTTCTTAACA 59.413 34.615 0.00 0.00 0.00 2.41
4646 8280 6.807720 TCGGTTTGTTTCCAACTTTTCTTAAC 59.192 34.615 0.00 0.00 0.00 2.01
4647 8281 6.807720 GTCGGTTTGTTTCCAACTTTTCTTAA 59.192 34.615 0.00 0.00 0.00 1.85
4648 8282 6.324042 GTCGGTTTGTTTCCAACTTTTCTTA 58.676 36.000 0.00 0.00 0.00 2.10
4649 8283 5.165676 GTCGGTTTGTTTCCAACTTTTCTT 58.834 37.500 0.00 0.00 0.00 2.52
4650 8284 4.381185 GGTCGGTTTGTTTCCAACTTTTCT 60.381 41.667 0.00 0.00 0.00 2.52
4651 8285 3.861113 GGTCGGTTTGTTTCCAACTTTTC 59.139 43.478 0.00 0.00 0.00 2.29
4652 8286 3.258622 TGGTCGGTTTGTTTCCAACTTTT 59.741 39.130 0.00 0.00 0.00 2.27
4653 8287 2.826725 TGGTCGGTTTGTTTCCAACTTT 59.173 40.909 0.00 0.00 0.00 2.66
4654 8288 2.164827 GTGGTCGGTTTGTTTCCAACTT 59.835 45.455 0.00 0.00 0.00 2.66
4655 8289 1.746787 GTGGTCGGTTTGTTTCCAACT 59.253 47.619 0.00 0.00 0.00 3.16
4656 8290 1.746787 AGTGGTCGGTTTGTTTCCAAC 59.253 47.619 0.00 0.00 0.00 3.77
4657 8291 2.131776 AGTGGTCGGTTTGTTTCCAA 57.868 45.000 0.00 0.00 0.00 3.53
4658 8292 2.841215 CTAGTGGTCGGTTTGTTTCCA 58.159 47.619 0.00 0.00 0.00 3.53
4659 8293 1.534163 GCTAGTGGTCGGTTTGTTTCC 59.466 52.381 0.00 0.00 0.00 3.13
4660 8294 2.490991 AGCTAGTGGTCGGTTTGTTTC 58.509 47.619 0.00 0.00 0.00 2.78
4661 8295 2.632987 AGCTAGTGGTCGGTTTGTTT 57.367 45.000 0.00 0.00 0.00 2.83
4662 8296 3.756933 TTAGCTAGTGGTCGGTTTGTT 57.243 42.857 0.00 0.00 0.00 2.83
4663 8297 3.975168 ATTAGCTAGTGGTCGGTTTGT 57.025 42.857 0.00 0.00 0.00 2.83
4664 8298 6.537301 TGAAATATTAGCTAGTGGTCGGTTTG 59.463 38.462 0.00 0.00 0.00 2.93
4665 8299 6.537660 GTGAAATATTAGCTAGTGGTCGGTTT 59.462 38.462 0.00 0.00 0.00 3.27
4666 8300 6.047231 GTGAAATATTAGCTAGTGGTCGGTT 58.953 40.000 0.00 0.00 0.00 4.44
4667 8301 5.128171 TGTGAAATATTAGCTAGTGGTCGGT 59.872 40.000 0.00 0.00 0.00 4.69
4668 8302 5.462398 GTGTGAAATATTAGCTAGTGGTCGG 59.538 44.000 0.00 0.00 0.00 4.79
4669 8303 6.273825 AGTGTGAAATATTAGCTAGTGGTCG 58.726 40.000 0.00 0.00 0.00 4.79
4670 8304 7.466050 GCAAGTGTGAAATATTAGCTAGTGGTC 60.466 40.741 0.00 0.00 0.00 4.02
4671 8305 6.316390 GCAAGTGTGAAATATTAGCTAGTGGT 59.684 38.462 0.00 0.00 0.00 4.16
4672 8306 6.238484 GGCAAGTGTGAAATATTAGCTAGTGG 60.238 42.308 0.00 0.00 0.00 4.00
4673 8307 6.316140 TGGCAAGTGTGAAATATTAGCTAGTG 59.684 38.462 0.00 0.00 0.00 2.74
4674 8308 6.414732 TGGCAAGTGTGAAATATTAGCTAGT 58.585 36.000 0.00 0.00 0.00 2.57
4675 8309 6.925610 TGGCAAGTGTGAAATATTAGCTAG 57.074 37.500 0.00 0.00 0.00 3.42
4676 8310 6.884295 AGTTGGCAAGTGTGAAATATTAGCTA 59.116 34.615 6.80 0.00 0.00 3.32
4677 8311 5.711976 AGTTGGCAAGTGTGAAATATTAGCT 59.288 36.000 6.80 0.00 0.00 3.32
4678 8312 5.954335 AGTTGGCAAGTGTGAAATATTAGC 58.046 37.500 6.80 0.00 0.00 3.09
4679 8313 8.816640 AAAAGTTGGCAAGTGTGAAATATTAG 57.183 30.769 8.61 0.00 0.00 1.73
4680 8314 9.039870 CAAAAAGTTGGCAAGTGTGAAATATTA 57.960 29.630 8.61 0.00 0.00 0.98
4681 8315 7.552330 ACAAAAAGTTGGCAAGTGTGAAATATT 59.448 29.630 8.61 0.00 39.22 1.28
4682 8316 7.047271 ACAAAAAGTTGGCAAGTGTGAAATAT 58.953 30.769 8.61 0.00 39.22 1.28
4683 8317 6.402222 ACAAAAAGTTGGCAAGTGTGAAATA 58.598 32.000 8.61 0.00 39.22 1.40
4684 8318 5.244755 ACAAAAAGTTGGCAAGTGTGAAAT 58.755 33.333 8.61 0.00 39.22 2.17
4685 8319 4.636249 ACAAAAAGTTGGCAAGTGTGAAA 58.364 34.783 8.61 0.00 39.22 2.69
4686 8320 4.264460 ACAAAAAGTTGGCAAGTGTGAA 57.736 36.364 8.61 0.00 39.22 3.18
4687 8321 3.951775 ACAAAAAGTTGGCAAGTGTGA 57.048 38.095 8.61 0.00 39.22 3.58
4688 8322 7.763172 TTAATACAAAAAGTTGGCAAGTGTG 57.237 32.000 8.61 9.77 39.22 3.82
4689 8323 8.956533 ATTTAATACAAAAAGTTGGCAAGTGT 57.043 26.923 8.61 0.00 39.22 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.