Multiple sequence alignment - TraesCS2D01G201500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G201500 chr2D 100.000 2393 0 0 1 2393 153001618 153004010 0.000000e+00 4420
1 TraesCS2D01G201500 chr2D 73.764 526 134 4 2 525 75755487 75754964 1.120000e-48 204
2 TraesCS2D01G201500 chr2B 92.921 1907 77 13 1 1884 210931255 210933126 0.000000e+00 2721
3 TraesCS2D01G201500 chr2B 85.934 1429 177 15 1 1425 211188799 211187391 0.000000e+00 1504
4 TraesCS2D01G201500 chr2A 92.412 1924 81 19 1 1882 148156887 148154987 0.000000e+00 2684
5 TraesCS2D01G201500 chr2A 86.396 1426 170 14 1 1422 147541455 147542860 0.000000e+00 1537
6 TraesCS2D01G201500 chr2A 79.196 1418 259 24 2 1410 43280759 43282149 0.000000e+00 952
7 TraesCS2D01G201500 chr2A 92.841 447 30 1 1949 2393 17392612 17392166 0.000000e+00 647
8 TraesCS2D01G201500 chr2A 72.817 504 129 8 2 501 75634496 75634995 5.290000e-37 165
9 TraesCS2D01G201500 chr5D 95.526 447 18 1 1949 2393 202831868 202832314 0.000000e+00 713
10 TraesCS2D01G201500 chr5D 92.617 447 31 1 1949 2393 318491087 318490641 2.010000e-180 641
11 TraesCS2D01G201500 chr5D 75.354 353 81 5 1 350 515245212 515245561 5.290000e-37 165
12 TraesCS2D01G201500 chr7A 94.631 447 21 2 1949 2393 166866987 166866542 0.000000e+00 689
13 TraesCS2D01G201500 chr5B 93.049 446 27 3 1951 2393 285622070 285621626 0.000000e+00 649
14 TraesCS2D01G201500 chr6B 92.841 447 30 1 1949 2393 649809949 649809503 0.000000e+00 647
15 TraesCS2D01G201500 chr3D 92.841 447 30 2 1949 2393 113579933 113580379 0.000000e+00 647
16 TraesCS2D01G201500 chr3D 92.617 447 31 1 1949 2393 300146093 300146539 2.010000e-180 641
17 TraesCS2D01G201500 chr4D 92.617 447 31 1 1949 2393 96719797 96719351 2.010000e-180 641


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G201500 chr2D 153001618 153004010 2392 False 4420 4420 100.000 1 2393 1 chr2D.!!$F1 2392
1 TraesCS2D01G201500 chr2D 75754964 75755487 523 True 204 204 73.764 2 525 1 chr2D.!!$R1 523
2 TraesCS2D01G201500 chr2B 210931255 210933126 1871 False 2721 2721 92.921 1 1884 1 chr2B.!!$F1 1883
3 TraesCS2D01G201500 chr2B 211187391 211188799 1408 True 1504 1504 85.934 1 1425 1 chr2B.!!$R1 1424
4 TraesCS2D01G201500 chr2A 148154987 148156887 1900 True 2684 2684 92.412 1 1882 1 chr2A.!!$R2 1881
5 TraesCS2D01G201500 chr2A 147541455 147542860 1405 False 1537 1537 86.396 1 1422 1 chr2A.!!$F3 1421
6 TraesCS2D01G201500 chr2A 43280759 43282149 1390 False 952 952 79.196 2 1410 1 chr2A.!!$F1 1408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 921 0.250234 CAGGCTCAGATTCCGGAACA 59.75 55.0 21.56 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2067 0.02577 CGACGACGCAACAGTTTGTT 59.974 50.0 0.0 0.0 42.08 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 106 1.101049 ACAACAACCCAGAAGCCACG 61.101 55.000 0.00 0.00 0.00 4.94
150 157 3.074412 CCAATCCAGTGTACCTGTTGAC 58.926 50.000 12.33 0.00 39.74 3.18
152 159 1.694844 TCCAGTGTACCTGTTGACGA 58.305 50.000 9.57 0.00 39.74 4.20
171 178 7.713764 TGACGATCCATCATACAAGTATTTG 57.286 36.000 0.00 0.00 40.24 2.32
352 359 1.429148 CTTTACGGCGACCTCCATGC 61.429 60.000 16.62 0.00 0.00 4.06
913 921 0.250234 CAGGCTCAGATTCCGGAACA 59.750 55.000 21.56 0.00 0.00 3.18
945 956 2.046411 TCGTAGTACCCGGCGTCA 60.046 61.111 6.01 0.00 0.00 4.35
1110 1121 3.184291 AGGAACTGGCCTGGCATT 58.816 55.556 22.05 11.36 37.18 3.56
1320 1331 2.282110 TGGATGGTGCCGTTGGTG 60.282 61.111 0.00 0.00 0.00 4.17
1438 1452 3.699894 CAGCCACGAGGAGCAGGT 61.700 66.667 1.86 0.00 36.89 4.00
1446 1460 1.315981 CGAGGAGCAGGTGCAGAGTA 61.316 60.000 4.48 0.00 45.16 2.59
1476 1490 2.825836 GGGTGGAGAAGCATGGCG 60.826 66.667 0.00 0.00 0.00 5.69
1513 1531 0.108945 GCTCTGTTCTTGGCAATGGC 60.109 55.000 0.00 0.00 40.13 4.40
1514 1532 1.250328 CTCTGTTCTTGGCAATGGCA 58.750 50.000 5.05 5.05 43.71 4.92
1515 1533 1.614903 CTCTGTTCTTGGCAATGGCAA 59.385 47.619 20.91 20.91 45.54 4.52
1516 1534 2.232941 CTCTGTTCTTGGCAATGGCAAT 59.767 45.455 22.31 0.00 46.44 3.56
1517 1535 2.028839 TCTGTTCTTGGCAATGGCAATG 60.029 45.455 22.31 15.68 46.44 2.82
1518 1536 1.002201 TGTTCTTGGCAATGGCAATGG 59.998 47.619 22.31 12.10 46.44 3.16
1519 1537 0.614294 TTCTTGGCAATGGCAATGGG 59.386 50.000 22.31 11.39 46.44 4.00
1520 1538 0.544833 TCTTGGCAATGGCAATGGGT 60.545 50.000 22.31 0.00 46.44 4.51
1521 1539 0.391927 CTTGGCAATGGCAATGGGTG 60.392 55.000 22.31 6.99 46.44 4.61
1566 1606 2.416701 CCGTTTTCTTGTGTGCTTTGGT 60.417 45.455 0.00 0.00 0.00 3.67
1591 1631 3.573967 AGTGGTAAGGCAAAATTCAGGTG 59.426 43.478 0.00 0.00 0.00 4.00
1596 1636 2.962859 AGGCAAAATTCAGGTGGACTT 58.037 42.857 0.00 0.00 0.00 3.01
1599 1639 3.552890 GGCAAAATTCAGGTGGACTTGAC 60.553 47.826 0.00 0.00 31.40 3.18
1618 1658 4.719616 GCTTGTGGCGCGTTCGAC 62.720 66.667 8.43 0.00 45.94 4.20
1651 1691 0.386478 ACCGACTGAAAGCGACGTAC 60.386 55.000 0.00 0.00 37.60 3.67
1676 1716 2.044946 GGGGGCTGCTAGTTGTGG 60.045 66.667 0.00 0.00 0.00 4.17
1783 1842 0.314935 GCTTTTGCCTTGCAGCAGTA 59.685 50.000 0.58 0.00 45.13 2.74
1784 1843 1.067354 GCTTTTGCCTTGCAGCAGTAT 60.067 47.619 0.58 0.00 45.13 2.12
1785 1844 2.164219 GCTTTTGCCTTGCAGCAGTATA 59.836 45.455 0.58 0.00 45.13 1.47
1788 1847 4.637483 TTTGCCTTGCAGCAGTATAATC 57.363 40.909 0.58 0.00 45.13 1.75
1804 1863 7.930865 GCAGTATAATCTGAGAGATTTGGAGTT 59.069 37.037 4.23 0.00 41.90 3.01
1825 1884 8.360390 GGAGTTAAAAACTTCAGATTTCCACAT 58.640 33.333 0.00 0.00 43.03 3.21
1842 1901 1.864711 ACATCCGTTGAACGTTGACTG 59.135 47.619 17.05 8.47 40.58 3.51
1843 1902 0.865769 ATCCGTTGAACGTTGACTGC 59.134 50.000 17.05 0.00 40.58 4.40
1884 1943 4.929808 ACGGTCTTCTAGCTATGTTGTTTG 59.070 41.667 0.00 0.00 0.00 2.93
1885 1944 4.929808 CGGTCTTCTAGCTATGTTGTTTGT 59.070 41.667 0.00 0.00 0.00 2.83
1886 1945 6.097356 CGGTCTTCTAGCTATGTTGTTTGTA 58.903 40.000 0.00 0.00 0.00 2.41
1887 1946 6.253727 CGGTCTTCTAGCTATGTTGTTTGTAG 59.746 42.308 0.00 0.00 0.00 2.74
1888 1947 7.321153 GGTCTTCTAGCTATGTTGTTTGTAGA 58.679 38.462 0.00 0.00 0.00 2.59
1889 1948 7.489757 GGTCTTCTAGCTATGTTGTTTGTAGAG 59.510 40.741 0.00 0.00 0.00 2.43
1890 1949 8.244802 GTCTTCTAGCTATGTTGTTTGTAGAGA 58.755 37.037 0.00 0.00 0.00 3.10
1891 1950 8.462811 TCTTCTAGCTATGTTGTTTGTAGAGAG 58.537 37.037 0.00 0.00 0.00 3.20
1892 1951 7.939784 TCTAGCTATGTTGTTTGTAGAGAGA 57.060 36.000 0.00 0.00 0.00 3.10
1893 1952 8.526667 TCTAGCTATGTTGTTTGTAGAGAGAT 57.473 34.615 0.00 0.00 0.00 2.75
1894 1953 8.972127 TCTAGCTATGTTGTTTGTAGAGAGATT 58.028 33.333 0.00 0.00 0.00 2.40
1895 1954 7.840342 AGCTATGTTGTTTGTAGAGAGATTG 57.160 36.000 0.00 0.00 0.00 2.67
1896 1955 7.390027 AGCTATGTTGTTTGTAGAGAGATTGT 58.610 34.615 0.00 0.00 0.00 2.71
1897 1956 7.880195 AGCTATGTTGTTTGTAGAGAGATTGTT 59.120 33.333 0.00 0.00 0.00 2.83
1898 1957 8.507249 GCTATGTTGTTTGTAGAGAGATTGTTT 58.493 33.333 0.00 0.00 0.00 2.83
1899 1958 9.817365 CTATGTTGTTTGTAGAGAGATTGTTTG 57.183 33.333 0.00 0.00 0.00 2.93
1900 1959 7.857734 TGTTGTTTGTAGAGAGATTGTTTGA 57.142 32.000 0.00 0.00 0.00 2.69
1901 1960 7.693952 TGTTGTTTGTAGAGAGATTGTTTGAC 58.306 34.615 0.00 0.00 0.00 3.18
1902 1961 7.335673 TGTTGTTTGTAGAGAGATTGTTTGACA 59.664 33.333 0.00 0.00 0.00 3.58
1903 1962 7.857734 TGTTTGTAGAGAGATTGTTTGACAA 57.142 32.000 0.00 0.00 42.95 3.18
1931 1990 9.316730 ACAATATTTGTTGTATTGATTGGATGC 57.683 29.630 11.55 0.00 42.22 3.91
1932 1991 9.537192 CAATATTTGTTGTATTGATTGGATGCT 57.463 29.630 0.75 0.00 40.37 3.79
1933 1992 9.537192 AATATTTGTTGTATTGATTGGATGCTG 57.463 29.630 0.00 0.00 0.00 4.41
1934 1993 4.987408 TGTTGTATTGATTGGATGCTGG 57.013 40.909 0.00 0.00 0.00 4.85
1935 1994 4.343231 TGTTGTATTGATTGGATGCTGGT 58.657 39.130 0.00 0.00 0.00 4.00
1936 1995 4.158209 TGTTGTATTGATTGGATGCTGGTG 59.842 41.667 0.00 0.00 0.00 4.17
1937 1996 2.689471 TGTATTGATTGGATGCTGGTGC 59.311 45.455 0.00 0.00 40.20 5.01
1938 1997 0.742505 ATTGATTGGATGCTGGTGCG 59.257 50.000 0.00 0.00 43.34 5.34
1939 1998 1.936436 TTGATTGGATGCTGGTGCGC 61.936 55.000 0.00 0.00 43.34 6.09
1940 1999 2.361483 ATTGGATGCTGGTGCGCA 60.361 55.556 5.66 5.66 45.10 6.09
1950 2009 4.464069 TGCTGGTGCGCATATATATACA 57.536 40.909 15.91 1.31 43.34 2.29
1951 2010 4.432712 TGCTGGTGCGCATATATATACAG 58.567 43.478 15.91 12.72 43.34 2.74
1952 2011 4.159506 TGCTGGTGCGCATATATATACAGA 59.840 41.667 15.91 1.06 43.34 3.41
1953 2012 4.742167 GCTGGTGCGCATATATATACAGAG 59.258 45.833 15.91 0.00 0.00 3.35
1954 2013 5.450550 GCTGGTGCGCATATATATACAGAGA 60.451 44.000 15.91 0.00 0.00 3.10
1955 2014 5.891451 TGGTGCGCATATATATACAGAGAC 58.109 41.667 15.91 0.00 0.00 3.36
1956 2015 5.652452 TGGTGCGCATATATATACAGAGACT 59.348 40.000 15.91 0.00 0.00 3.24
1957 2016 5.974158 GGTGCGCATATATATACAGAGACTG 59.026 44.000 15.91 0.00 37.52 3.51
1958 2017 6.183360 GGTGCGCATATATATACAGAGACTGA 60.183 42.308 15.91 0.00 35.18 3.41
1959 2018 7.251281 GTGCGCATATATATACAGAGACTGAA 58.749 38.462 15.91 0.00 35.18 3.02
1960 2019 7.219154 GTGCGCATATATATACAGAGACTGAAC 59.781 40.741 15.91 0.00 35.18 3.18
1961 2020 6.693545 GCGCATATATATACAGAGACTGAACC 59.306 42.308 0.30 0.00 35.18 3.62
1962 2021 6.907748 CGCATATATATACAGAGACTGAACCG 59.092 42.308 5.76 0.00 35.18 4.44
1963 2022 7.201617 CGCATATATATACAGAGACTGAACCGA 60.202 40.741 5.76 0.00 35.18 4.69
1964 2023 8.459635 GCATATATATACAGAGACTGAACCGAA 58.540 37.037 5.76 0.00 35.18 4.30
1967 2026 6.777213 ATATACAGAGACTGAACCGAAACT 57.223 37.500 5.76 0.00 35.18 2.66
1968 2027 3.372660 ACAGAGACTGAACCGAAACTC 57.627 47.619 5.76 0.00 35.18 3.01
1969 2028 2.036089 ACAGAGACTGAACCGAAACTCC 59.964 50.000 5.76 0.00 35.18 3.85
1970 2029 2.297597 CAGAGACTGAACCGAAACTCCT 59.702 50.000 0.00 0.00 32.44 3.69
1971 2030 2.559231 AGAGACTGAACCGAAACTCCTC 59.441 50.000 0.00 0.00 0.00 3.71
1972 2031 1.269998 AGACTGAACCGAAACTCCTCG 59.730 52.381 0.00 0.00 38.58 4.63
1973 2032 1.268899 GACTGAACCGAAACTCCTCGA 59.731 52.381 0.00 0.00 41.44 4.04
1974 2033 1.684983 ACTGAACCGAAACTCCTCGAA 59.315 47.619 0.00 0.00 41.44 3.71
1975 2034 2.288273 ACTGAACCGAAACTCCTCGAAG 60.288 50.000 0.00 0.00 41.44 3.79
1976 2035 1.958579 TGAACCGAAACTCCTCGAAGA 59.041 47.619 0.00 0.00 41.44 2.87
1977 2036 2.288030 TGAACCGAAACTCCTCGAAGAC 60.288 50.000 0.00 0.00 41.44 3.01
1978 2037 0.240411 ACCGAAACTCCTCGAAGACG 59.760 55.000 0.00 0.00 41.44 4.18
1979 2038 0.456312 CCGAAACTCCTCGAAGACGG 60.456 60.000 0.00 0.00 41.44 4.79
1980 2039 0.520404 CGAAACTCCTCGAAGACGGA 59.480 55.000 0.00 0.00 41.44 4.69
1981 2040 1.068748 CGAAACTCCTCGAAGACGGAA 60.069 52.381 0.00 0.00 41.44 4.30
1982 2041 2.597520 GAAACTCCTCGAAGACGGAAG 58.402 52.381 0.00 0.00 40.21 3.46
1983 2042 5.448237 CGAAACTCCTCGAAGACGGAAGT 62.448 52.174 0.00 0.00 44.77 3.01
1984 2043 6.145029 CGAAACTCCTCGAAGACGGAAGTA 62.145 50.000 0.00 0.00 42.96 2.24
1985 2044 7.854839 CGAAACTCCTCGAAGACGGAAGTAG 62.855 52.000 0.00 0.00 42.96 2.57
1994 2053 3.007581 ACGGAAGTAGGCAATCCCT 57.992 52.632 0.00 0.00 46.88 4.20
1995 2054 1.286248 ACGGAAGTAGGCAATCCCTT 58.714 50.000 0.00 0.00 46.88 3.95
1996 2055 2.474112 ACGGAAGTAGGCAATCCCTTA 58.526 47.619 0.00 0.00 46.88 2.69
1997 2056 2.434702 ACGGAAGTAGGCAATCCCTTAG 59.565 50.000 0.00 0.00 46.88 2.18
1998 2057 2.434702 CGGAAGTAGGCAATCCCTTAGT 59.565 50.000 0.00 0.00 43.06 2.24
1999 2058 3.492829 CGGAAGTAGGCAATCCCTTAGTC 60.493 52.174 0.00 0.00 43.06 2.59
2000 2059 3.454812 GGAAGTAGGCAATCCCTTAGTCA 59.545 47.826 0.00 0.00 43.06 3.41
2001 2060 4.103311 GGAAGTAGGCAATCCCTTAGTCAT 59.897 45.833 0.00 0.00 43.06 3.06
2002 2061 4.965200 AGTAGGCAATCCCTTAGTCATC 57.035 45.455 0.00 0.00 43.06 2.92
2003 2062 4.298626 AGTAGGCAATCCCTTAGTCATCA 58.701 43.478 0.00 0.00 43.06 3.07
2004 2063 4.910304 AGTAGGCAATCCCTTAGTCATCAT 59.090 41.667 0.00 0.00 43.06 2.45
2005 2064 6.084738 AGTAGGCAATCCCTTAGTCATCATA 58.915 40.000 0.00 0.00 43.06 2.15
2006 2065 6.732862 AGTAGGCAATCCCTTAGTCATCATAT 59.267 38.462 0.00 0.00 43.06 1.78
2007 2066 6.059787 AGGCAATCCCTTAGTCATCATATC 57.940 41.667 0.00 0.00 43.06 1.63
2008 2067 5.549228 AGGCAATCCCTTAGTCATCATATCA 59.451 40.000 0.00 0.00 43.06 2.15
2009 2068 6.044754 AGGCAATCCCTTAGTCATCATATCAA 59.955 38.462 0.00 0.00 43.06 2.57
2010 2069 6.150140 GGCAATCCCTTAGTCATCATATCAAC 59.850 42.308 0.00 0.00 0.00 3.18
2011 2070 6.712095 GCAATCCCTTAGTCATCATATCAACA 59.288 38.462 0.00 0.00 0.00 3.33
2012 2071 7.229306 GCAATCCCTTAGTCATCATATCAACAA 59.771 37.037 0.00 0.00 0.00 2.83
2013 2072 9.123902 CAATCCCTTAGTCATCATATCAACAAA 57.876 33.333 0.00 0.00 0.00 2.83
2014 2073 8.682936 ATCCCTTAGTCATCATATCAACAAAC 57.317 34.615 0.00 0.00 0.00 2.93
2015 2074 7.861629 TCCCTTAGTCATCATATCAACAAACT 58.138 34.615 0.00 0.00 0.00 2.66
2016 2075 7.770433 TCCCTTAGTCATCATATCAACAAACTG 59.230 37.037 0.00 0.00 0.00 3.16
2017 2076 7.554118 CCCTTAGTCATCATATCAACAAACTGT 59.446 37.037 0.00 0.00 0.00 3.55
2018 2077 8.950210 CCTTAGTCATCATATCAACAAACTGTT 58.050 33.333 0.00 0.00 42.08 3.16
2026 2085 3.889780 AACAAACTGTTGCGTCGTC 57.110 47.368 0.00 0.00 39.45 4.20
2027 2086 0.025770 AACAAACTGTTGCGTCGTCG 59.974 50.000 0.00 0.00 39.45 5.12
2028 2087 1.083657 CAAACTGTTGCGTCGTCGG 60.084 57.895 3.90 0.00 37.56 4.79
2029 2088 1.227031 AAACTGTTGCGTCGTCGGA 60.227 52.632 3.90 0.00 37.56 4.55
2030 2089 0.806884 AAACTGTTGCGTCGTCGGAA 60.807 50.000 4.76 4.76 44.32 4.30
2044 2103 3.053828 GGAACGTGGAGAACCCGA 58.946 61.111 0.00 0.00 37.93 5.14
2045 2104 1.368579 GGAACGTGGAGAACCCGAA 59.631 57.895 0.00 0.00 37.93 4.30
2046 2105 0.036671 GGAACGTGGAGAACCCGAAT 60.037 55.000 0.00 0.00 37.93 3.34
2047 2106 1.205417 GGAACGTGGAGAACCCGAATA 59.795 52.381 0.00 0.00 37.93 1.75
2048 2107 2.265683 GAACGTGGAGAACCCGAATAC 58.734 52.381 0.00 0.00 37.93 1.89
2049 2108 0.171903 ACGTGGAGAACCCGAATACG 59.828 55.000 0.00 0.00 36.88 3.06
2073 2132 3.660621 GGCAACCTGCTCTCACAC 58.339 61.111 0.00 0.00 44.28 3.82
2074 2133 2.320587 GGCAACCTGCTCTCACACG 61.321 63.158 0.00 0.00 44.28 4.49
2075 2134 1.300931 GCAACCTGCTCTCACACGA 60.301 57.895 0.00 0.00 40.96 4.35
2076 2135 0.880278 GCAACCTGCTCTCACACGAA 60.880 55.000 0.00 0.00 40.96 3.85
2077 2136 1.143305 CAACCTGCTCTCACACGAAG 58.857 55.000 0.00 0.00 0.00 3.79
2093 2152 4.371855 ACGAAGTGAATATCGAGCTCAA 57.628 40.909 15.40 0.00 42.51 3.02
2094 2153 4.938080 ACGAAGTGAATATCGAGCTCAAT 58.062 39.130 15.40 2.80 42.51 2.57
2095 2154 6.073327 ACGAAGTGAATATCGAGCTCAATA 57.927 37.500 15.40 5.54 42.51 1.90
2096 2155 6.682746 ACGAAGTGAATATCGAGCTCAATAT 58.317 36.000 15.40 8.05 42.51 1.28
2097 2156 6.584184 ACGAAGTGAATATCGAGCTCAATATG 59.416 38.462 15.40 0.00 42.51 1.78
2098 2157 6.453527 CGAAGTGAATATCGAGCTCAATATGC 60.454 42.308 15.40 10.15 41.43 3.14
2099 2158 6.035368 AGTGAATATCGAGCTCAATATGCT 57.965 37.500 15.40 7.53 44.24 3.79
2100 2159 6.462500 AGTGAATATCGAGCTCAATATGCTT 58.538 36.000 15.40 0.00 41.30 3.91
2101 2160 6.589523 AGTGAATATCGAGCTCAATATGCTTC 59.410 38.462 15.40 7.00 41.30 3.86
2102 2161 5.574443 TGAATATCGAGCTCAATATGCTTCG 59.426 40.000 15.40 0.00 41.30 3.79
2103 2162 2.871182 TCGAGCTCAATATGCTTCGT 57.129 45.000 15.40 0.00 41.30 3.85
2104 2163 3.982576 TCGAGCTCAATATGCTTCGTA 57.017 42.857 15.40 0.00 41.30 3.43
2105 2164 3.629058 TCGAGCTCAATATGCTTCGTAC 58.371 45.455 15.40 0.00 41.30 3.67
2106 2165 2.402049 CGAGCTCAATATGCTTCGTACG 59.598 50.000 15.40 9.53 41.30 3.67
2107 2166 3.372954 GAGCTCAATATGCTTCGTACGT 58.627 45.455 16.05 0.00 41.30 3.57
2108 2167 3.372954 AGCTCAATATGCTTCGTACGTC 58.627 45.455 16.05 6.58 37.52 4.34
2109 2168 2.151360 GCTCAATATGCTTCGTACGTCG 59.849 50.000 16.05 8.58 41.41 5.12
2117 2176 3.265955 TCGTACGTCGATGGTGCA 58.734 55.556 16.05 0.00 44.01 4.57
2118 2177 1.154169 TCGTACGTCGATGGTGCAC 60.154 57.895 16.05 8.80 44.01 4.57
2119 2178 2.156446 CGTACGTCGATGGTGCACC 61.156 63.158 29.67 29.67 42.86 5.01
2120 2179 2.156446 GTACGTCGATGGTGCACCG 61.156 63.158 30.07 18.61 39.43 4.94
2121 2180 3.345209 TACGTCGATGGTGCACCGG 62.345 63.158 30.07 21.21 39.43 5.28
2122 2181 4.429212 CGTCGATGGTGCACCGGA 62.429 66.667 30.07 23.07 39.43 5.14
2123 2182 2.186903 GTCGATGGTGCACCGGAT 59.813 61.111 30.07 19.47 39.43 4.18
2124 2183 1.449601 GTCGATGGTGCACCGGATT 60.450 57.895 30.07 15.20 39.43 3.01
2125 2184 1.449423 TCGATGGTGCACCGGATTG 60.449 57.895 30.07 21.59 39.43 2.67
2126 2185 2.472059 CGATGGTGCACCGGATTGG 61.472 63.158 30.07 12.62 46.41 3.16
2127 2186 2.755469 ATGGTGCACCGGATTGGC 60.755 61.111 30.07 6.85 43.94 4.52
2131 2190 4.776322 TGCACCGGATTGGCGGAG 62.776 66.667 9.46 0.00 43.94 4.63
2132 2191 4.467084 GCACCGGATTGGCGGAGA 62.467 66.667 9.46 0.00 43.94 3.71
2133 2192 2.202932 CACCGGATTGGCGGAGAG 60.203 66.667 9.46 0.00 43.94 3.20
2134 2193 3.470888 ACCGGATTGGCGGAGAGG 61.471 66.667 9.46 0.00 43.94 3.69
2135 2194 3.470888 CCGGATTGGCGGAGAGGT 61.471 66.667 0.00 0.00 0.00 3.85
2136 2195 2.131709 CCGGATTGGCGGAGAGGTA 61.132 63.158 0.00 0.00 0.00 3.08
2137 2196 1.364171 CGGATTGGCGGAGAGGTAG 59.636 63.158 0.00 0.00 0.00 3.18
2138 2197 1.107538 CGGATTGGCGGAGAGGTAGA 61.108 60.000 0.00 0.00 0.00 2.59
2139 2198 0.389757 GGATTGGCGGAGAGGTAGAC 59.610 60.000 0.00 0.00 0.00 2.59
2140 2199 0.389757 GATTGGCGGAGAGGTAGACC 59.610 60.000 0.00 0.00 0.00 3.85
2144 2203 4.253257 CGGAGAGGTAGACCGCGC 62.253 72.222 0.00 0.00 40.98 6.86
2145 2204 2.829458 GGAGAGGTAGACCGCGCT 60.829 66.667 5.56 0.00 40.98 5.92
2146 2205 2.409651 GAGAGGTAGACCGCGCTG 59.590 66.667 5.56 0.00 40.98 5.18
2147 2206 2.045242 AGAGGTAGACCGCGCTGA 60.045 61.111 5.61 0.00 40.98 4.26
2148 2207 2.102553 GAGGTAGACCGCGCTGAC 59.897 66.667 5.61 0.00 42.08 3.51
2149 2208 3.736482 GAGGTAGACCGCGCTGACG 62.736 68.421 5.61 0.00 42.08 4.35
2150 2209 4.112341 GGTAGACCGCGCTGACGT 62.112 66.667 5.61 0.00 42.83 4.34
2151 2210 2.126580 GTAGACCGCGCTGACGTT 60.127 61.111 5.61 0.00 42.83 3.99
2152 2211 1.135315 GTAGACCGCGCTGACGTTA 59.865 57.895 5.61 0.00 42.83 3.18
2153 2212 0.248377 GTAGACCGCGCTGACGTTAT 60.248 55.000 5.61 0.00 42.83 1.89
2154 2213 0.028505 TAGACCGCGCTGACGTTATC 59.971 55.000 5.61 0.00 42.83 1.75
2155 2214 2.565394 GACCGCGCTGACGTTATCG 61.565 63.158 5.61 0.00 42.83 2.92
2156 2215 3.972803 CCGCGCTGACGTTATCGC 61.973 66.667 17.24 17.24 42.83 4.58
2157 2216 3.244603 CGCGCTGACGTTATCGCA 61.245 61.111 24.71 1.63 46.95 5.10
2158 2217 2.615618 GCGCTGACGTTATCGCAG 59.384 61.111 21.37 9.95 45.99 5.18
2159 2218 2.158959 GCGCTGACGTTATCGCAGT 61.159 57.895 21.37 0.00 45.99 4.40
2160 2219 0.864377 GCGCTGACGTTATCGCAGTA 60.864 55.000 21.37 0.00 45.99 2.74
2161 2220 1.113253 CGCTGACGTTATCGCAGTAG 58.887 55.000 14.62 8.73 40.46 2.57
2162 2221 1.267882 CGCTGACGTTATCGCAGTAGA 60.268 52.381 14.62 0.00 40.46 2.59
2163 2222 2.110226 GCTGACGTTATCGCAGTAGAC 58.890 52.381 14.62 1.25 40.46 2.59
2164 2223 2.477357 GCTGACGTTATCGCAGTAGACA 60.477 50.000 14.62 0.00 40.46 3.41
2165 2224 3.754955 CTGACGTTATCGCAGTAGACAA 58.245 45.455 0.00 0.00 41.18 3.18
2166 2225 3.754955 TGACGTTATCGCAGTAGACAAG 58.245 45.455 0.00 0.00 41.18 3.16
2167 2226 3.437741 TGACGTTATCGCAGTAGACAAGA 59.562 43.478 0.00 0.00 41.18 3.02
2168 2227 4.017380 ACGTTATCGCAGTAGACAAGAG 57.983 45.455 0.00 0.00 41.18 2.85
2169 2228 3.439476 ACGTTATCGCAGTAGACAAGAGT 59.561 43.478 0.00 0.00 41.18 3.24
2170 2229 3.786576 CGTTATCGCAGTAGACAAGAGTG 59.213 47.826 0.00 0.00 0.00 3.51
2171 2230 2.949451 ATCGCAGTAGACAAGAGTGG 57.051 50.000 0.00 0.00 0.00 4.00
2172 2231 0.243907 TCGCAGTAGACAAGAGTGGC 59.756 55.000 0.00 0.00 0.00 5.01
2173 2232 0.737715 CGCAGTAGACAAGAGTGGCC 60.738 60.000 0.00 0.00 30.22 5.36
2174 2233 0.610687 GCAGTAGACAAGAGTGGCCT 59.389 55.000 3.32 0.00 30.22 5.19
2175 2234 1.002544 GCAGTAGACAAGAGTGGCCTT 59.997 52.381 3.32 0.00 30.22 4.35
2176 2235 2.693069 CAGTAGACAAGAGTGGCCTTG 58.307 52.381 3.32 1.98 46.61 3.61
2182 2241 1.679139 CAAGAGTGGCCTTGTGAACA 58.321 50.000 3.32 0.00 38.87 3.18
2183 2242 2.233271 CAAGAGTGGCCTTGTGAACAT 58.767 47.619 3.32 0.00 38.87 2.71
2184 2243 2.191128 AGAGTGGCCTTGTGAACATC 57.809 50.000 3.32 0.00 0.00 3.06
2185 2244 1.421268 AGAGTGGCCTTGTGAACATCA 59.579 47.619 3.32 0.00 0.00 3.07
2197 2256 3.632189 GTGAACATCACAAAGCAACTCC 58.368 45.455 5.65 0.00 46.22 3.85
2198 2257 3.316308 GTGAACATCACAAAGCAACTCCT 59.684 43.478 5.65 0.00 46.22 3.69
2199 2258 3.316029 TGAACATCACAAAGCAACTCCTG 59.684 43.478 0.00 0.00 0.00 3.86
2200 2259 2.233271 ACATCACAAAGCAACTCCTGG 58.767 47.619 0.00 0.00 0.00 4.45
2201 2260 2.158623 ACATCACAAAGCAACTCCTGGA 60.159 45.455 0.00 0.00 0.00 3.86
2202 2261 2.260844 TCACAAAGCAACTCCTGGAG 57.739 50.000 22.00 22.00 35.52 3.86
2203 2262 0.595095 CACAAAGCAACTCCTGGAGC 59.405 55.000 23.43 10.92 32.04 4.70
2204 2263 0.183492 ACAAAGCAACTCCTGGAGCA 59.817 50.000 23.43 0.00 32.04 4.26
2205 2264 0.879765 CAAAGCAACTCCTGGAGCAG 59.120 55.000 23.43 16.40 32.04 4.24
2206 2265 0.892814 AAAGCAACTCCTGGAGCAGC 60.893 55.000 25.13 25.13 34.47 5.25
2207 2266 1.776975 AAGCAACTCCTGGAGCAGCT 61.777 55.000 27.91 27.91 42.14 4.24
2208 2267 2.039405 GCAACTCCTGGAGCAGCTG 61.039 63.158 23.43 10.11 32.54 4.24
2209 2268 1.675801 CAACTCCTGGAGCAGCTGA 59.324 57.895 23.43 0.00 32.04 4.26
2210 2269 0.673022 CAACTCCTGGAGCAGCTGAC 60.673 60.000 23.43 10.42 32.04 3.51
2211 2270 2.164865 AACTCCTGGAGCAGCTGACG 62.165 60.000 23.43 0.00 32.04 4.35
2212 2271 3.368190 CTCCTGGAGCAGCTGACGG 62.368 68.421 20.43 11.45 0.00 4.79
2213 2272 3.385384 CCTGGAGCAGCTGACGGA 61.385 66.667 20.43 0.00 0.00 4.69
2214 2273 2.729479 CCTGGAGCAGCTGACGGAT 61.729 63.158 20.43 0.00 0.00 4.18
2215 2274 1.227205 CTGGAGCAGCTGACGGATC 60.227 63.158 20.43 6.34 0.00 3.36
2216 2275 2.107953 GGAGCAGCTGACGGATCC 59.892 66.667 20.43 11.85 39.36 3.36
2217 2276 2.725312 GGAGCAGCTGACGGATCCA 61.725 63.158 20.43 0.00 44.80 3.41
2218 2277 1.219124 GAGCAGCTGACGGATCCAA 59.781 57.895 20.43 0.00 0.00 3.53
2219 2278 0.809241 GAGCAGCTGACGGATCCAAG 60.809 60.000 20.43 7.13 0.00 3.61
2220 2279 1.219124 GCAGCTGACGGATCCAAGA 59.781 57.895 20.43 0.00 0.00 3.02
2221 2280 0.809241 GCAGCTGACGGATCCAAGAG 60.809 60.000 20.43 4.56 0.00 2.85
2222 2281 0.809241 CAGCTGACGGATCCAAGAGC 60.809 60.000 8.42 14.42 0.00 4.09
2223 2282 1.219124 GCTGACGGATCCAAGAGCA 59.781 57.895 13.41 0.86 0.00 4.26
2224 2283 0.179062 GCTGACGGATCCAAGAGCAT 60.179 55.000 13.41 0.00 0.00 3.79
2225 2284 1.745141 GCTGACGGATCCAAGAGCATT 60.745 52.381 13.41 0.00 0.00 3.56
2226 2285 2.208431 CTGACGGATCCAAGAGCATTC 58.792 52.381 13.41 0.00 0.00 2.67
2227 2286 1.212616 GACGGATCCAAGAGCATTCG 58.787 55.000 13.41 0.00 0.00 3.34
2228 2287 0.179073 ACGGATCCAAGAGCATTCGG 60.179 55.000 13.41 0.00 0.00 4.30
2229 2288 1.502163 CGGATCCAAGAGCATTCGGC 61.502 60.000 13.41 0.00 45.30 5.54
2230 2289 1.169034 GGATCCAAGAGCATTCGGCC 61.169 60.000 6.95 0.00 46.50 6.13
2231 2290 0.464373 GATCCAAGAGCATTCGGCCA 60.464 55.000 2.24 0.00 46.50 5.36
2232 2291 0.749454 ATCCAAGAGCATTCGGCCAC 60.749 55.000 2.24 0.00 46.50 5.01
2233 2292 2.753966 CCAAGAGCATTCGGCCACG 61.754 63.158 2.24 0.00 46.50 4.94
2234 2293 2.436646 AAGAGCATTCGGCCACGG 60.437 61.111 2.24 0.00 46.50 4.94
2252 2311 4.524318 CGTTAGCCACGGCCCGAT 62.524 66.667 11.71 0.00 45.89 4.18
2253 2312 2.816718 GTTAGCCACGGCCCGATA 59.183 61.111 11.71 0.00 43.17 2.92
2254 2313 1.593479 GTTAGCCACGGCCCGATAC 60.593 63.158 11.71 0.00 43.17 2.24
2255 2314 1.759299 TTAGCCACGGCCCGATACT 60.759 57.895 11.71 5.93 43.17 2.12
2256 2315 1.741327 TTAGCCACGGCCCGATACTC 61.741 60.000 11.71 0.00 43.17 2.59
2257 2316 2.635787 TAGCCACGGCCCGATACTCT 62.636 60.000 11.71 1.67 43.17 3.24
2258 2317 2.417516 CCACGGCCCGATACTCTG 59.582 66.667 11.71 0.00 0.00 3.35
2259 2318 2.279517 CACGGCCCGATACTCTGC 60.280 66.667 11.71 0.00 0.00 4.26
2260 2319 3.537874 ACGGCCCGATACTCTGCC 61.538 66.667 11.71 0.00 40.54 4.85
2261 2320 3.227276 CGGCCCGATACTCTGCCT 61.227 66.667 0.00 0.00 41.80 4.75
2262 2321 2.737830 GGCCCGATACTCTGCCTC 59.262 66.667 0.00 0.00 40.77 4.70
2263 2322 2.336809 GCCCGATACTCTGCCTCG 59.663 66.667 0.00 0.00 0.00 4.63
2265 2324 2.336809 CCGATACTCTGCCTCGGC 59.663 66.667 0.00 0.00 44.65 5.54
2266 2325 2.050895 CGATACTCTGCCTCGGCG 60.051 66.667 0.00 0.00 45.51 6.46
2267 2326 2.355244 GATACTCTGCCTCGGCGC 60.355 66.667 0.00 0.00 45.51 6.53
2268 2327 2.835431 ATACTCTGCCTCGGCGCT 60.835 61.111 7.64 0.00 45.51 5.92
2269 2328 3.144120 ATACTCTGCCTCGGCGCTG 62.144 63.158 10.86 10.86 45.51 5.18
2283 2342 4.767255 GCTGGAGCGGGACTGTGG 62.767 72.222 0.00 0.00 0.00 4.17
2284 2343 4.087892 CTGGAGCGGGACTGTGGG 62.088 72.222 0.00 0.00 0.00 4.61
2287 2346 4.767255 GAGCGGGACTGTGGGCTG 62.767 72.222 2.09 0.00 35.54 4.85
2290 2349 4.742201 CGGGACTGTGGGCTGTCG 62.742 72.222 0.00 0.00 42.29 4.35
2292 2351 4.008933 GGACTGTGGGCTGTCGCT 62.009 66.667 0.00 0.00 42.29 4.93
2293 2352 2.031163 GACTGTGGGCTGTCGCTT 59.969 61.111 0.00 0.00 34.68 4.68
2294 2353 2.029844 GACTGTGGGCTGTCGCTTC 61.030 63.158 0.00 0.00 34.68 3.86
2295 2354 2.031012 CTGTGGGCTGTCGCTTCA 59.969 61.111 0.00 0.00 36.09 3.02
2296 2355 1.597854 CTGTGGGCTGTCGCTTCAA 60.598 57.895 0.00 0.00 36.09 2.69
2297 2356 0.957395 CTGTGGGCTGTCGCTTCAAT 60.957 55.000 0.00 0.00 36.09 2.57
2298 2357 1.236616 TGTGGGCTGTCGCTTCAATG 61.237 55.000 0.00 0.00 36.09 2.82
2299 2358 0.955428 GTGGGCTGTCGCTTCAATGA 60.955 55.000 0.00 0.00 36.09 2.57
2300 2359 0.955428 TGGGCTGTCGCTTCAATGAC 60.955 55.000 0.00 0.00 36.09 3.06
2301 2360 1.648467 GGGCTGTCGCTTCAATGACC 61.648 60.000 0.00 0.00 34.18 4.02
2302 2361 0.955428 GGCTGTCGCTTCAATGACCA 60.955 55.000 0.00 0.00 34.18 4.02
2303 2362 0.874390 GCTGTCGCTTCAATGACCAA 59.126 50.000 0.00 0.00 34.18 3.67
2304 2363 1.135859 GCTGTCGCTTCAATGACCAAG 60.136 52.381 0.00 0.00 34.18 3.61
2305 2364 2.416747 CTGTCGCTTCAATGACCAAGA 58.583 47.619 0.00 0.00 34.18 3.02
2306 2365 3.005554 CTGTCGCTTCAATGACCAAGAT 58.994 45.455 0.00 0.00 34.18 2.40
2307 2366 4.183865 CTGTCGCTTCAATGACCAAGATA 58.816 43.478 0.00 0.00 34.18 1.98
2308 2367 4.769688 TGTCGCTTCAATGACCAAGATAT 58.230 39.130 0.00 0.00 34.18 1.63
2309 2368 4.811024 TGTCGCTTCAATGACCAAGATATC 59.189 41.667 0.00 0.00 34.18 1.63
2310 2369 4.811024 GTCGCTTCAATGACCAAGATATCA 59.189 41.667 5.32 0.00 0.00 2.15
2311 2370 5.294306 GTCGCTTCAATGACCAAGATATCAA 59.706 40.000 5.32 0.00 0.00 2.57
2312 2371 5.294306 TCGCTTCAATGACCAAGATATCAAC 59.706 40.000 5.32 0.00 0.00 3.18
2313 2372 5.505286 GCTTCAATGACCAAGATATCAACG 58.495 41.667 5.32 0.00 0.00 4.10
2314 2373 5.294306 GCTTCAATGACCAAGATATCAACGA 59.706 40.000 5.32 0.00 0.00 3.85
2315 2374 6.510799 GCTTCAATGACCAAGATATCAACGAG 60.511 42.308 5.32 0.00 0.00 4.18
2316 2375 5.359756 TCAATGACCAAGATATCAACGAGG 58.640 41.667 5.32 1.83 0.00 4.63
2317 2376 3.819564 TGACCAAGATATCAACGAGGG 57.180 47.619 5.32 0.00 0.00 4.30
2318 2377 2.158957 TGACCAAGATATCAACGAGGGC 60.159 50.000 5.32 1.95 0.00 5.19
2319 2378 1.141053 ACCAAGATATCAACGAGGGCC 59.859 52.381 5.32 0.00 0.00 5.80
2320 2379 1.543429 CCAAGATATCAACGAGGGCCC 60.543 57.143 16.46 16.46 0.00 5.80
2321 2380 1.140852 CAAGATATCAACGAGGGCCCA 59.859 52.381 27.56 0.78 0.00 5.36
2322 2381 1.507140 AGATATCAACGAGGGCCCAA 58.493 50.000 27.56 1.54 0.00 4.12
2323 2382 1.417890 AGATATCAACGAGGGCCCAAG 59.582 52.381 27.56 20.03 0.00 3.61
2324 2383 0.474184 ATATCAACGAGGGCCCAAGG 59.526 55.000 27.56 15.18 0.00 3.61
2325 2384 0.912487 TATCAACGAGGGCCCAAGGT 60.912 55.000 27.56 15.93 0.00 3.50
2326 2385 0.912487 ATCAACGAGGGCCCAAGGTA 60.912 55.000 27.56 4.68 0.00 3.08
2327 2386 1.078426 CAACGAGGGCCCAAGGTAG 60.078 63.158 27.56 10.54 0.00 3.18
2328 2387 1.229400 AACGAGGGCCCAAGGTAGA 60.229 57.895 27.56 0.00 0.00 2.59
2329 2388 1.551019 AACGAGGGCCCAAGGTAGAC 61.551 60.000 27.56 3.47 0.00 2.59
2330 2389 2.901042 GAGGGCCCAAGGTAGACG 59.099 66.667 27.56 0.00 0.00 4.18
2331 2390 3.387225 GAGGGCCCAAGGTAGACGC 62.387 68.421 27.56 0.00 0.00 5.19
2332 2391 3.712907 GGGCCCAAGGTAGACGCA 61.713 66.667 19.95 0.00 0.00 5.24
2333 2392 2.349755 GGCCCAAGGTAGACGCAA 59.650 61.111 0.00 0.00 0.00 4.85
2334 2393 1.077716 GGCCCAAGGTAGACGCAAT 60.078 57.895 0.00 0.00 0.00 3.56
2335 2394 0.179468 GGCCCAAGGTAGACGCAATA 59.821 55.000 0.00 0.00 0.00 1.90
2336 2395 1.583054 GCCCAAGGTAGACGCAATAG 58.417 55.000 0.00 0.00 0.00 1.73
2337 2396 1.583054 CCCAAGGTAGACGCAATAGC 58.417 55.000 0.00 0.00 37.42 2.97
2338 2397 1.583054 CCAAGGTAGACGCAATAGCC 58.417 55.000 0.00 0.00 37.52 3.93
2339 2398 1.209128 CAAGGTAGACGCAATAGCCG 58.791 55.000 0.00 0.00 37.52 5.52
2340 2399 0.104304 AAGGTAGACGCAATAGCCGG 59.896 55.000 0.00 0.00 37.52 6.13
2341 2400 0.754217 AGGTAGACGCAATAGCCGGA 60.754 55.000 5.05 0.00 37.52 5.14
2342 2401 0.317479 GGTAGACGCAATAGCCGGAT 59.683 55.000 5.05 0.00 37.52 4.18
2343 2402 1.419374 GTAGACGCAATAGCCGGATG 58.581 55.000 5.05 0.00 37.52 3.51
2344 2403 1.037493 TAGACGCAATAGCCGGATGT 58.963 50.000 5.05 0.00 37.52 3.06
2345 2404 1.037493 AGACGCAATAGCCGGATGTA 58.963 50.000 5.05 0.00 37.52 2.29
2346 2405 1.000163 AGACGCAATAGCCGGATGTAG 60.000 52.381 5.05 0.00 37.52 2.74
2347 2406 1.000607 GACGCAATAGCCGGATGTAGA 60.001 52.381 5.05 0.00 37.52 2.59
2348 2407 1.000163 ACGCAATAGCCGGATGTAGAG 60.000 52.381 5.05 0.00 37.52 2.43
2349 2408 1.433534 GCAATAGCCGGATGTAGAGC 58.566 55.000 5.05 0.00 33.58 4.09
2350 2409 1.702886 CAATAGCCGGATGTAGAGCG 58.297 55.000 5.05 0.00 0.00 5.03
2351 2410 0.038159 AATAGCCGGATGTAGAGCGC 60.038 55.000 5.05 0.00 0.00 5.92
2352 2411 1.878656 ATAGCCGGATGTAGAGCGCC 61.879 60.000 5.05 0.00 0.00 6.53
2355 2414 4.647615 CGGATGTAGAGCGCCGGG 62.648 72.222 2.29 0.00 40.08 5.73
2356 2415 3.537874 GGATGTAGAGCGCCGGGT 61.538 66.667 2.29 0.00 0.00 5.28
2357 2416 2.279517 GATGTAGAGCGCCGGGTG 60.280 66.667 2.29 2.44 0.00 4.61
2358 2417 3.075005 ATGTAGAGCGCCGGGTGT 61.075 61.111 2.29 0.00 0.00 4.16
2359 2418 2.955751 GATGTAGAGCGCCGGGTGTC 62.956 65.000 2.29 5.84 0.00 3.67
2360 2419 4.849329 GTAGAGCGCCGGGTGTCG 62.849 72.222 2.29 0.00 38.88 4.35
2371 2430 4.468689 GGTGTCGGGGCAGCCTAC 62.469 72.222 12.43 8.23 0.00 3.18
2372 2431 4.468689 GTGTCGGGGCAGCCTACC 62.469 72.222 12.43 3.72 0.00 3.18
2379 2438 4.162690 GGCAGCCTACCCAGTCGG 62.163 72.222 3.29 0.00 37.81 4.79
2380 2439 4.840005 GCAGCCTACCCAGTCGGC 62.840 72.222 2.21 2.21 43.49 5.54
2381 2440 4.514577 CAGCCTACCCAGTCGGCG 62.515 72.222 0.00 0.00 46.91 6.46
2383 2442 4.509737 GCCTACCCAGTCGGCGTC 62.510 72.222 6.85 0.00 34.84 5.19
2384 2443 3.834799 CCTACCCAGTCGGCGTCC 61.835 72.222 6.85 0.00 33.26 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 106 7.325660 TCAAAGATTTCACATAATCAGAGGC 57.674 36.000 0.00 0.00 37.06 4.70
150 157 7.713764 TGACAAATACTTGTATGATGGATCG 57.286 36.000 0.00 0.00 45.98 3.69
152 159 7.013655 GCCTTGACAAATACTTGTATGATGGAT 59.986 37.037 0.00 0.00 45.98 3.41
171 178 1.285950 GCCAAACGGAAGCCTTGAC 59.714 57.895 0.00 0.00 30.99 3.18
469 477 4.821589 CTGGGAGGACGCCTTCGC 62.822 72.222 0.00 0.00 39.84 4.70
690 698 2.029073 ACACGCCACTTCGTCCTG 59.971 61.111 0.00 0.00 41.21 3.86
864 872 2.639327 GGCCATGCAAGTGTGGGTC 61.639 63.158 6.21 0.00 36.00 4.46
945 956 2.737376 GTTTCGCTCCGTTCCGCT 60.737 61.111 0.00 0.00 0.00 5.52
1083 1094 4.480480 CAGTTCCTGGGCCTCCTA 57.520 61.111 4.53 0.00 0.00 2.94
1110 1121 4.074526 GAGCTGCTCTCCACGGCA 62.075 66.667 21.93 0.00 42.07 5.69
1320 1331 2.437359 AACGGCCTGCTCATGCTC 60.437 61.111 0.00 0.00 40.48 4.26
1513 1531 4.124351 CGCAGGCAGCACCCATTG 62.124 66.667 1.96 0.00 46.13 2.82
1566 1606 4.280677 CCTGAATTTTGCCTTACCACTTGA 59.719 41.667 0.00 0.00 0.00 3.02
1591 1631 2.617274 GCCACAAGCCGTCAAGTCC 61.617 63.158 0.00 0.00 34.35 3.85
1623 1663 2.730402 GCTTTCAGTCGGTACTCGGTAC 60.730 54.545 5.84 5.84 38.19 3.34
1624 1664 1.470098 GCTTTCAGTCGGTACTCGGTA 59.530 52.381 0.00 0.00 39.77 4.02
1625 1665 0.243095 GCTTTCAGTCGGTACTCGGT 59.757 55.000 0.00 0.00 39.77 4.69
1626 1666 0.797249 CGCTTTCAGTCGGTACTCGG 60.797 60.000 0.00 0.00 39.77 4.63
1672 1712 3.807631 GACCAGAGCGCACACCACA 62.808 63.158 11.47 0.00 0.00 4.17
1673 1713 3.044305 GACCAGAGCGCACACCAC 61.044 66.667 11.47 0.00 0.00 4.16
1674 1714 2.601194 TTTGACCAGAGCGCACACCA 62.601 55.000 11.47 0.00 0.00 4.17
1675 1715 1.891919 TTTGACCAGAGCGCACACC 60.892 57.895 11.47 0.00 0.00 4.16
1676 1716 1.279840 GTTTGACCAGAGCGCACAC 59.720 57.895 11.47 0.00 0.00 3.82
1785 1844 9.579932 AGTTTTTAACTCCAAATCTCTCAGATT 57.420 29.630 0.00 0.00 41.28 2.40
1788 1847 8.840321 TGAAGTTTTTAACTCCAAATCTCTCAG 58.160 33.333 0.00 0.00 41.91 3.35
1804 1863 6.488683 ACGGATGTGGAAATCTGAAGTTTTTA 59.511 34.615 0.16 0.00 36.58 1.52
1806 1865 4.827284 ACGGATGTGGAAATCTGAAGTTTT 59.173 37.500 0.16 0.00 36.58 2.43
1842 1901 4.072088 CGACAGTGCCGAAACCGC 62.072 66.667 0.00 0.00 0.00 5.68
1843 1902 4.072088 GCGACAGTGCCGAAACCG 62.072 66.667 1.91 0.00 0.00 4.44
1906 1965 9.537192 AGCATCCAATCAATACAACAAATATTG 57.463 29.630 0.00 0.00 40.11 1.90
1907 1966 9.537192 CAGCATCCAATCAATACAACAAATATT 57.463 29.630 0.00 0.00 0.00 1.28
1908 1967 8.145767 CCAGCATCCAATCAATACAACAAATAT 58.854 33.333 0.00 0.00 0.00 1.28
1909 1968 7.123997 ACCAGCATCCAATCAATACAACAAATA 59.876 33.333 0.00 0.00 0.00 1.40
1910 1969 6.070653 ACCAGCATCCAATCAATACAACAAAT 60.071 34.615 0.00 0.00 0.00 2.32
1911 1970 5.245751 ACCAGCATCCAATCAATACAACAAA 59.754 36.000 0.00 0.00 0.00 2.83
1912 1971 4.771577 ACCAGCATCCAATCAATACAACAA 59.228 37.500 0.00 0.00 0.00 2.83
1913 1972 4.158209 CACCAGCATCCAATCAATACAACA 59.842 41.667 0.00 0.00 0.00 3.33
1914 1973 4.675510 CACCAGCATCCAATCAATACAAC 58.324 43.478 0.00 0.00 0.00 3.32
1915 1974 3.130869 GCACCAGCATCCAATCAATACAA 59.869 43.478 0.00 0.00 41.58 2.41
1916 1975 2.689471 GCACCAGCATCCAATCAATACA 59.311 45.455 0.00 0.00 41.58 2.29
1917 1976 2.287188 CGCACCAGCATCCAATCAATAC 60.287 50.000 0.00 0.00 42.27 1.89
1918 1977 1.948834 CGCACCAGCATCCAATCAATA 59.051 47.619 0.00 0.00 42.27 1.90
1919 1978 0.742505 CGCACCAGCATCCAATCAAT 59.257 50.000 0.00 0.00 42.27 2.57
1920 1979 1.936436 GCGCACCAGCATCCAATCAA 61.936 55.000 0.30 0.00 42.27 2.57
1921 1980 2.409055 GCGCACCAGCATCCAATCA 61.409 57.895 0.30 0.00 42.27 2.57
1922 1981 2.409055 TGCGCACCAGCATCCAATC 61.409 57.895 5.66 0.00 42.92 2.67
1923 1982 2.361483 TGCGCACCAGCATCCAAT 60.361 55.556 5.66 0.00 42.92 3.16
1930 1989 4.682787 TCTGTATATATATGCGCACCAGC 58.317 43.478 14.90 0.00 37.71 4.85
1931 1990 5.974158 GTCTCTGTATATATATGCGCACCAG 59.026 44.000 14.90 8.86 0.00 4.00
1932 1991 5.652452 AGTCTCTGTATATATATGCGCACCA 59.348 40.000 14.90 3.44 0.00 4.17
1933 1992 5.974158 CAGTCTCTGTATATATATGCGCACC 59.026 44.000 14.90 0.00 0.00 5.01
1934 1993 6.786207 TCAGTCTCTGTATATATATGCGCAC 58.214 40.000 14.90 0.00 32.61 5.34
1935 1994 7.251281 GTTCAGTCTCTGTATATATATGCGCA 58.749 38.462 14.96 14.96 32.61 6.09
1936 1995 6.693545 GGTTCAGTCTCTGTATATATATGCGC 59.306 42.308 0.00 0.00 32.61 6.09
1937 1996 6.907748 CGGTTCAGTCTCTGTATATATATGCG 59.092 42.308 5.44 1.72 32.61 4.73
1938 1997 7.986562 TCGGTTCAGTCTCTGTATATATATGC 58.013 38.462 5.44 4.69 32.61 3.14
1941 2000 9.570468 AGTTTCGGTTCAGTCTCTGTATATATA 57.430 33.333 0.00 0.00 32.61 0.86
1942 2001 8.466617 AGTTTCGGTTCAGTCTCTGTATATAT 57.533 34.615 0.00 0.00 32.61 0.86
1943 2002 7.013083 GGAGTTTCGGTTCAGTCTCTGTATATA 59.987 40.741 0.00 0.00 32.61 0.86
1944 2003 6.183360 GGAGTTTCGGTTCAGTCTCTGTATAT 60.183 42.308 0.00 0.00 32.61 0.86
1945 2004 5.125097 GGAGTTTCGGTTCAGTCTCTGTATA 59.875 44.000 0.00 0.00 32.61 1.47
1946 2005 4.082136 GGAGTTTCGGTTCAGTCTCTGTAT 60.082 45.833 0.00 0.00 32.61 2.29
1947 2006 3.255149 GGAGTTTCGGTTCAGTCTCTGTA 59.745 47.826 0.00 0.00 32.61 2.74
1948 2007 2.036089 GGAGTTTCGGTTCAGTCTCTGT 59.964 50.000 0.00 0.00 32.61 3.41
1949 2008 2.297597 AGGAGTTTCGGTTCAGTCTCTG 59.702 50.000 0.00 0.00 0.00 3.35
1950 2009 2.559231 GAGGAGTTTCGGTTCAGTCTCT 59.441 50.000 0.00 0.00 0.00 3.10
1951 2010 2.668834 CGAGGAGTTTCGGTTCAGTCTC 60.669 54.545 0.00 0.00 36.95 3.36
1952 2011 1.269998 CGAGGAGTTTCGGTTCAGTCT 59.730 52.381 0.00 0.00 36.95 3.24
1953 2012 1.268899 TCGAGGAGTTTCGGTTCAGTC 59.731 52.381 0.00 0.00 40.83 3.51
1954 2013 1.325355 TCGAGGAGTTTCGGTTCAGT 58.675 50.000 0.00 0.00 40.83 3.41
1955 2014 2.030185 TCTTCGAGGAGTTTCGGTTCAG 60.030 50.000 0.00 0.00 40.83 3.02
1956 2015 1.958579 TCTTCGAGGAGTTTCGGTTCA 59.041 47.619 0.00 0.00 40.83 3.18
1957 2016 2.326664 GTCTTCGAGGAGTTTCGGTTC 58.673 52.381 0.00 0.00 40.83 3.62
1958 2017 1.335689 CGTCTTCGAGGAGTTTCGGTT 60.336 52.381 0.00 0.00 40.83 4.44
1959 2018 0.240411 CGTCTTCGAGGAGTTTCGGT 59.760 55.000 0.00 0.00 40.83 4.69
1960 2019 0.456312 CCGTCTTCGAGGAGTTTCGG 60.456 60.000 9.38 9.38 40.83 4.30
1961 2020 0.520404 TCCGTCTTCGAGGAGTTTCG 59.480 55.000 0.00 0.00 41.79 3.46
1962 2021 2.030096 ACTTCCGTCTTCGAGGAGTTTC 60.030 50.000 0.00 0.00 37.88 2.78
1963 2022 1.962100 ACTTCCGTCTTCGAGGAGTTT 59.038 47.619 0.00 0.00 37.88 2.66
1964 2023 1.618487 ACTTCCGTCTTCGAGGAGTT 58.382 50.000 0.00 0.00 37.88 3.01
1965 2024 2.358015 CTACTTCCGTCTTCGAGGAGT 58.642 52.381 0.00 0.00 37.88 3.85
1966 2025 1.671845 CCTACTTCCGTCTTCGAGGAG 59.328 57.143 0.00 0.00 37.88 3.69
1967 2026 1.747709 CCTACTTCCGTCTTCGAGGA 58.252 55.000 0.00 0.00 39.71 3.71
1968 2027 0.100861 GCCTACTTCCGTCTTCGAGG 59.899 60.000 0.00 0.00 39.71 4.63
1969 2028 0.809385 TGCCTACTTCCGTCTTCGAG 59.191 55.000 0.00 0.00 39.71 4.04
1970 2029 1.250328 TTGCCTACTTCCGTCTTCGA 58.750 50.000 0.00 0.00 39.71 3.71
1971 2030 2.194271 GATTGCCTACTTCCGTCTTCG 58.806 52.381 0.00 0.00 0.00 3.79
1972 2031 2.552031 GGATTGCCTACTTCCGTCTTC 58.448 52.381 0.00 0.00 0.00 2.87
1973 2032 1.209747 GGGATTGCCTACTTCCGTCTT 59.790 52.381 0.00 0.00 0.00 3.01
1974 2033 0.831307 GGGATTGCCTACTTCCGTCT 59.169 55.000 0.00 0.00 0.00 4.18
1975 2034 0.831307 AGGGATTGCCTACTTCCGTC 59.169 55.000 0.00 0.00 0.00 4.79
1976 2035 1.286248 AAGGGATTGCCTACTTCCGT 58.714 50.000 0.00 0.00 0.00 4.69
1977 2036 2.434702 ACTAAGGGATTGCCTACTTCCG 59.565 50.000 0.00 0.00 0.00 4.30
1978 2037 3.454812 TGACTAAGGGATTGCCTACTTCC 59.545 47.826 0.00 0.00 0.00 3.46
1979 2038 4.755266 TGACTAAGGGATTGCCTACTTC 57.245 45.455 0.00 0.00 0.00 3.01
1980 2039 4.721776 TGATGACTAAGGGATTGCCTACTT 59.278 41.667 0.00 0.00 0.00 2.24
1981 2040 4.298626 TGATGACTAAGGGATTGCCTACT 58.701 43.478 0.00 0.00 0.00 2.57
1982 2041 4.689612 TGATGACTAAGGGATTGCCTAC 57.310 45.455 0.00 0.00 0.00 3.18
1983 2042 6.730507 TGATATGATGACTAAGGGATTGCCTA 59.269 38.462 0.00 0.00 0.00 3.93
1984 2043 5.549228 TGATATGATGACTAAGGGATTGCCT 59.451 40.000 0.00 0.00 0.00 4.75
1985 2044 5.809001 TGATATGATGACTAAGGGATTGCC 58.191 41.667 0.00 0.00 0.00 4.52
1986 2045 6.712095 TGTTGATATGATGACTAAGGGATTGC 59.288 38.462 0.00 0.00 0.00 3.56
1987 2046 8.681486 TTGTTGATATGATGACTAAGGGATTG 57.319 34.615 0.00 0.00 0.00 2.67
1988 2047 9.125026 GTTTGTTGATATGATGACTAAGGGATT 57.875 33.333 0.00 0.00 0.00 3.01
1989 2048 8.497745 AGTTTGTTGATATGATGACTAAGGGAT 58.502 33.333 0.00 0.00 0.00 3.85
1990 2049 7.770433 CAGTTTGTTGATATGATGACTAAGGGA 59.230 37.037 0.00 0.00 0.00 4.20
1991 2050 7.554118 ACAGTTTGTTGATATGATGACTAAGGG 59.446 37.037 0.00 0.00 0.00 3.95
1992 2051 8.498054 ACAGTTTGTTGATATGATGACTAAGG 57.502 34.615 0.00 0.00 0.00 2.69
2008 2067 0.025770 CGACGACGCAACAGTTTGTT 59.974 50.000 0.00 0.00 42.08 2.83
2009 2068 1.634225 CGACGACGCAACAGTTTGT 59.366 52.632 0.00 0.00 34.90 2.83
2010 2069 1.083657 CCGACGACGCAACAGTTTG 60.084 57.895 0.64 0.00 38.29 2.93
2011 2070 0.806884 TTCCGACGACGCAACAGTTT 60.807 50.000 0.64 0.00 38.29 2.66
2012 2071 1.227031 TTCCGACGACGCAACAGTT 60.227 52.632 0.64 0.00 38.29 3.16
2013 2072 1.947642 GTTCCGACGACGCAACAGT 60.948 57.895 9.15 0.00 39.59 3.55
2014 2073 2.844146 GTTCCGACGACGCAACAG 59.156 61.111 9.15 0.00 39.59 3.16
2024 2083 1.373873 GGGTTCTCCACGTTCCGAC 60.374 63.158 0.00 0.00 35.00 4.79
2025 2084 2.922950 CGGGTTCTCCACGTTCCGA 61.923 63.158 0.00 0.00 39.83 4.55
2026 2085 2.424705 TTCGGGTTCTCCACGTTCCG 62.425 60.000 0.00 0.00 38.92 4.30
2027 2086 0.036671 ATTCGGGTTCTCCACGTTCC 60.037 55.000 0.00 0.00 34.36 3.62
2028 2087 2.265683 GTATTCGGGTTCTCCACGTTC 58.734 52.381 0.00 0.00 34.36 3.95
2029 2088 1.403249 CGTATTCGGGTTCTCCACGTT 60.403 52.381 0.00 0.00 34.36 3.99
2030 2089 0.171903 CGTATTCGGGTTCTCCACGT 59.828 55.000 0.00 0.00 34.36 4.49
2031 2090 2.953669 CGTATTCGGGTTCTCCACG 58.046 57.895 0.00 0.00 34.36 4.94
2051 2110 1.267574 TGAGAGCAGGTTGCCCTAGG 61.268 60.000 0.06 0.06 46.52 3.02
2052 2111 0.107945 GTGAGAGCAGGTTGCCCTAG 60.108 60.000 0.00 0.00 46.52 3.02
2053 2112 0.835971 TGTGAGAGCAGGTTGCCCTA 60.836 55.000 0.00 0.00 46.52 3.53
2054 2113 2.149383 TGTGAGAGCAGGTTGCCCT 61.149 57.895 0.00 0.00 46.52 5.19
2055 2114 1.968540 GTGTGAGAGCAGGTTGCCC 60.969 63.158 0.00 0.00 46.52 5.36
2056 2115 2.320587 CGTGTGAGAGCAGGTTGCC 61.321 63.158 0.00 0.00 46.52 4.52
2057 2116 0.880278 TTCGTGTGAGAGCAGGTTGC 60.880 55.000 0.00 0.00 45.46 4.17
2058 2117 1.143305 CTTCGTGTGAGAGCAGGTTG 58.857 55.000 0.00 0.00 0.00 3.77
2059 2118 0.753262 ACTTCGTGTGAGAGCAGGTT 59.247 50.000 0.00 0.00 0.00 3.50
2060 2119 2.431023 ACTTCGTGTGAGAGCAGGT 58.569 52.632 0.00 0.00 0.00 4.00
2070 2129 3.128764 TGAGCTCGATATTCACTTCGTGT 59.871 43.478 9.64 0.00 36.74 4.49
2071 2130 3.695816 TGAGCTCGATATTCACTTCGTG 58.304 45.455 9.64 0.00 36.74 4.35
2072 2131 4.371855 TTGAGCTCGATATTCACTTCGT 57.628 40.909 9.64 0.00 36.74 3.85
2073 2132 6.453527 GCATATTGAGCTCGATATTCACTTCG 60.454 42.308 27.39 17.70 32.08 3.79
2074 2133 6.589523 AGCATATTGAGCTCGATATTCACTTC 59.410 38.462 27.39 14.99 38.01 3.01
2075 2134 6.462500 AGCATATTGAGCTCGATATTCACTT 58.538 36.000 27.39 9.60 38.01 3.16
2076 2135 6.035368 AGCATATTGAGCTCGATATTCACT 57.965 37.500 27.39 21.94 38.01 3.41
2077 2136 6.453527 CGAAGCATATTGAGCTCGATATTCAC 60.454 42.308 27.39 20.51 42.53 3.18
2078 2137 5.574443 CGAAGCATATTGAGCTCGATATTCA 59.426 40.000 27.39 9.74 42.53 2.57
2079 2138 5.574830 ACGAAGCATATTGAGCTCGATATTC 59.425 40.000 27.39 23.66 42.53 1.75
2080 2139 5.473931 ACGAAGCATATTGAGCTCGATATT 58.526 37.500 27.39 17.57 42.53 1.28
2081 2140 5.065704 ACGAAGCATATTGAGCTCGATAT 57.934 39.130 25.17 25.17 42.53 1.63
2082 2141 4.505313 ACGAAGCATATTGAGCTCGATA 57.495 40.909 23.14 23.14 42.53 2.92
2083 2142 3.377346 ACGAAGCATATTGAGCTCGAT 57.623 42.857 20.32 20.32 42.53 3.59
2084 2143 2.871182 ACGAAGCATATTGAGCTCGA 57.129 45.000 6.01 6.01 42.53 4.04
2085 2144 2.402049 CGTACGAAGCATATTGAGCTCG 59.598 50.000 10.44 0.00 42.53 5.03
2086 2145 3.372954 ACGTACGAAGCATATTGAGCTC 58.627 45.455 24.41 6.82 42.53 4.09
2087 2146 3.372954 GACGTACGAAGCATATTGAGCT 58.627 45.455 24.41 0.00 45.97 4.09
2088 2147 2.151360 CGACGTACGAAGCATATTGAGC 59.849 50.000 24.41 0.00 45.77 4.26
2101 2160 2.156446 GGTGCACCATCGACGTACG 61.156 63.158 31.23 15.01 38.54 3.67
2102 2161 2.156446 CGGTGCACCATCGACGTAC 61.156 63.158 34.16 4.51 40.81 3.67
2103 2162 2.179767 CGGTGCACCATCGACGTA 59.820 61.111 34.16 0.00 40.81 3.57
2104 2163 4.735132 CCGGTGCACCATCGACGT 62.735 66.667 34.16 0.00 40.81 4.34
2105 2164 3.716539 ATCCGGTGCACCATCGACG 62.717 63.158 34.16 19.00 40.81 5.12
2106 2165 1.449601 AATCCGGTGCACCATCGAC 60.450 57.895 34.16 7.59 40.81 4.20
2107 2166 1.449423 CAATCCGGTGCACCATCGA 60.449 57.895 34.16 24.96 40.81 3.59
2108 2167 2.472059 CCAATCCGGTGCACCATCG 61.472 63.158 34.16 20.45 37.76 3.84
2109 2168 2.774799 GCCAATCCGGTGCACCATC 61.775 63.158 34.16 9.15 36.97 3.51
2110 2169 2.755469 GCCAATCCGGTGCACCAT 60.755 61.111 34.16 19.22 36.97 3.55
2119 2178 1.107538 TCTACCTCTCCGCCAATCCG 61.108 60.000 0.00 0.00 0.00 4.18
2120 2179 0.389757 GTCTACCTCTCCGCCAATCC 59.610 60.000 0.00 0.00 0.00 3.01
2121 2180 0.389757 GGTCTACCTCTCCGCCAATC 59.610 60.000 0.00 0.00 0.00 2.67
2122 2181 1.392710 CGGTCTACCTCTCCGCCAAT 61.393 60.000 0.00 0.00 37.90 3.16
2123 2182 2.050350 CGGTCTACCTCTCCGCCAA 61.050 63.158 0.00 0.00 37.90 4.52
2124 2183 2.439701 CGGTCTACCTCTCCGCCA 60.440 66.667 0.00 0.00 37.90 5.69
2127 2186 4.253257 GCGCGGTCTACCTCTCCG 62.253 72.222 8.83 0.00 45.94 4.63
2128 2187 2.829458 AGCGCGGTCTACCTCTCC 60.829 66.667 4.23 0.00 0.00 3.71
2129 2188 2.113433 TCAGCGCGGTCTACCTCTC 61.113 63.158 8.38 0.00 0.00 3.20
2130 2189 2.045242 TCAGCGCGGTCTACCTCT 60.045 61.111 8.38 0.00 0.00 3.69
2131 2190 2.102553 GTCAGCGCGGTCTACCTC 59.897 66.667 8.38 0.00 0.00 3.85
2132 2191 3.812019 CGTCAGCGCGGTCTACCT 61.812 66.667 8.38 0.00 0.00 3.08
2133 2192 2.257286 TAACGTCAGCGCGGTCTACC 62.257 60.000 8.38 0.00 42.83 3.18
2134 2193 0.248377 ATAACGTCAGCGCGGTCTAC 60.248 55.000 8.38 9.18 42.83 2.59
2135 2194 0.028505 GATAACGTCAGCGCGGTCTA 59.971 55.000 8.38 0.00 42.83 2.59
2136 2195 1.226603 GATAACGTCAGCGCGGTCT 60.227 57.895 8.38 0.00 42.83 3.85
2137 2196 2.565394 CGATAACGTCAGCGCGGTC 61.565 63.158 8.38 0.25 42.83 4.79
2138 2197 2.578713 CGATAACGTCAGCGCGGT 60.579 61.111 4.23 4.23 42.83 5.68
2139 2198 3.972803 GCGATAACGTCAGCGCGG 61.973 66.667 5.23 0.00 43.95 6.46
2142 2201 1.113253 CTACTGCGATAACGTCAGCG 58.887 55.000 13.70 0.00 42.54 5.18
2143 2202 2.110226 GTCTACTGCGATAACGTCAGC 58.890 52.381 13.70 0.02 42.54 4.26
2144 2203 3.400505 TGTCTACTGCGATAACGTCAG 57.599 47.619 12.68 12.68 43.49 3.51
2145 2204 3.437741 TCTTGTCTACTGCGATAACGTCA 59.562 43.478 0.00 0.00 41.98 4.35
2146 2205 4.012319 TCTTGTCTACTGCGATAACGTC 57.988 45.455 0.00 0.00 41.98 4.34
2147 2206 3.439476 ACTCTTGTCTACTGCGATAACGT 59.561 43.478 0.00 0.00 41.98 3.99
2148 2207 3.786576 CACTCTTGTCTACTGCGATAACG 59.213 47.826 0.00 0.00 42.93 3.18
2149 2208 4.106197 CCACTCTTGTCTACTGCGATAAC 58.894 47.826 0.00 0.00 0.00 1.89
2150 2209 3.428999 GCCACTCTTGTCTACTGCGATAA 60.429 47.826 0.00 0.00 0.00 1.75
2151 2210 2.099263 GCCACTCTTGTCTACTGCGATA 59.901 50.000 0.00 0.00 0.00 2.92
2152 2211 1.134965 GCCACTCTTGTCTACTGCGAT 60.135 52.381 0.00 0.00 0.00 4.58
2153 2212 0.243907 GCCACTCTTGTCTACTGCGA 59.756 55.000 0.00 0.00 0.00 5.10
2154 2213 0.737715 GGCCACTCTTGTCTACTGCG 60.738 60.000 0.00 0.00 0.00 5.18
2155 2214 0.610687 AGGCCACTCTTGTCTACTGC 59.389 55.000 5.01 0.00 0.00 4.40
2156 2215 2.693069 CAAGGCCACTCTTGTCTACTG 58.307 52.381 5.01 0.00 39.27 2.74
2163 2222 1.679139 TGTTCACAAGGCCACTCTTG 58.321 50.000 5.01 2.64 46.86 3.02
2164 2223 2.158623 TGATGTTCACAAGGCCACTCTT 60.159 45.455 5.01 0.00 0.00 2.85
2165 2224 1.421268 TGATGTTCACAAGGCCACTCT 59.579 47.619 5.01 0.00 0.00 3.24
2166 2225 1.537202 GTGATGTTCACAAGGCCACTC 59.463 52.381 5.01 0.00 46.22 3.51
2167 2226 1.609208 GTGATGTTCACAAGGCCACT 58.391 50.000 5.01 0.00 46.22 4.00
2177 2236 3.316029 CAGGAGTTGCTTTGTGATGTTCA 59.684 43.478 0.00 0.00 0.00 3.18
2178 2237 3.304928 CCAGGAGTTGCTTTGTGATGTTC 60.305 47.826 0.00 0.00 0.00 3.18
2179 2238 2.624838 CCAGGAGTTGCTTTGTGATGTT 59.375 45.455 0.00 0.00 0.00 2.71
2180 2239 2.158623 TCCAGGAGTTGCTTTGTGATGT 60.159 45.455 0.00 0.00 0.00 3.06
2181 2240 2.486982 CTCCAGGAGTTGCTTTGTGATG 59.513 50.000 8.54 0.00 0.00 3.07
2182 2241 2.787994 CTCCAGGAGTTGCTTTGTGAT 58.212 47.619 8.54 0.00 0.00 3.06
2183 2242 1.815408 GCTCCAGGAGTTGCTTTGTGA 60.815 52.381 18.37 0.00 31.39 3.58
2184 2243 0.595095 GCTCCAGGAGTTGCTTTGTG 59.405 55.000 18.37 0.00 31.39 3.33
2185 2244 0.183492 TGCTCCAGGAGTTGCTTTGT 59.817 50.000 18.37 0.00 31.39 2.83
2186 2245 0.879765 CTGCTCCAGGAGTTGCTTTG 59.120 55.000 18.37 0.00 31.39 2.77
2187 2246 0.892814 GCTGCTCCAGGAGTTGCTTT 60.893 55.000 18.37 0.00 35.78 3.51
2188 2247 1.303155 GCTGCTCCAGGAGTTGCTT 60.303 57.895 18.37 0.00 35.78 3.91
2189 2248 2.222727 AGCTGCTCCAGGAGTTGCT 61.223 57.895 24.02 24.02 36.31 3.91
2190 2249 2.039405 CAGCTGCTCCAGGAGTTGC 61.039 63.158 18.37 20.04 37.80 4.17
2191 2250 0.673022 GTCAGCTGCTCCAGGAGTTG 60.673 60.000 18.37 11.72 43.83 3.16
2192 2251 1.676384 GTCAGCTGCTCCAGGAGTT 59.324 57.895 18.37 0.00 35.78 3.01
2193 2252 2.644212 CGTCAGCTGCTCCAGGAGT 61.644 63.158 18.37 0.00 35.78 3.85
2194 2253 2.183811 CGTCAGCTGCTCCAGGAG 59.816 66.667 12.81 12.81 36.50 3.69
2195 2254 3.385384 CCGTCAGCTGCTCCAGGA 61.385 66.667 9.47 0.00 31.21 3.86
2196 2255 2.641439 GATCCGTCAGCTGCTCCAGG 62.641 65.000 9.47 7.58 31.21 4.45
2197 2256 1.227205 GATCCGTCAGCTGCTCCAG 60.227 63.158 9.47 0.00 34.12 3.86
2198 2257 2.725312 GGATCCGTCAGCTGCTCCA 61.725 63.158 9.47 0.00 0.00 3.86
2199 2258 2.107953 GGATCCGTCAGCTGCTCC 59.892 66.667 9.47 6.13 0.00 4.70
2200 2259 0.809241 CTTGGATCCGTCAGCTGCTC 60.809 60.000 9.47 3.67 0.00 4.26
2201 2260 1.220206 CTTGGATCCGTCAGCTGCT 59.780 57.895 9.47 0.00 0.00 4.24
2202 2261 0.809241 CTCTTGGATCCGTCAGCTGC 60.809 60.000 9.47 3.23 0.00 5.25
2203 2262 0.809241 GCTCTTGGATCCGTCAGCTG 60.809 60.000 17.38 7.63 0.00 4.24
2204 2263 1.260538 TGCTCTTGGATCCGTCAGCT 61.261 55.000 22.45 0.00 0.00 4.24
2205 2264 0.179062 ATGCTCTTGGATCCGTCAGC 60.179 55.000 17.68 17.68 0.00 4.26
2206 2265 2.208431 GAATGCTCTTGGATCCGTCAG 58.792 52.381 7.39 3.09 0.00 3.51
2207 2266 1.471501 CGAATGCTCTTGGATCCGTCA 60.472 52.381 7.39 0.54 0.00 4.35
2208 2267 1.212616 CGAATGCTCTTGGATCCGTC 58.787 55.000 7.39 0.00 0.00 4.79
2209 2268 0.179073 CCGAATGCTCTTGGATCCGT 60.179 55.000 7.39 0.00 0.00 4.69
2210 2269 1.502163 GCCGAATGCTCTTGGATCCG 61.502 60.000 7.39 0.00 36.87 4.18
2211 2270 1.169034 GGCCGAATGCTCTTGGATCC 61.169 60.000 4.20 4.20 40.92 3.36
2212 2271 0.464373 TGGCCGAATGCTCTTGGATC 60.464 55.000 0.00 0.00 40.92 3.36
2213 2272 0.749454 GTGGCCGAATGCTCTTGGAT 60.749 55.000 0.00 0.00 40.92 3.41
2214 2273 1.377202 GTGGCCGAATGCTCTTGGA 60.377 57.895 0.00 0.00 40.92 3.53
2215 2274 2.753966 CGTGGCCGAATGCTCTTGG 61.754 63.158 0.00 0.00 40.92 3.61
2216 2275 2.753966 CCGTGGCCGAATGCTCTTG 61.754 63.158 0.00 0.00 40.92 3.02
2217 2276 2.436646 CCGTGGCCGAATGCTCTT 60.437 61.111 0.00 0.00 40.92 2.85
2222 2281 2.808958 CTAACGCCGTGGCCGAATG 61.809 63.158 5.08 0.00 37.98 2.67
2223 2282 2.510691 CTAACGCCGTGGCCGAAT 60.511 61.111 5.08 0.00 37.98 3.34
2236 2295 1.593479 GTATCGGGCCGTGGCTAAC 60.593 63.158 27.32 11.91 41.60 2.34
2237 2296 1.741327 GAGTATCGGGCCGTGGCTAA 61.741 60.000 27.32 5.33 41.60 3.09
2238 2297 2.123597 AGTATCGGGCCGTGGCTA 60.124 61.111 27.32 6.22 41.60 3.93
2239 2298 3.537874 GAGTATCGGGCCGTGGCT 61.538 66.667 27.32 20.59 41.60 4.75
2240 2299 3.537874 AGAGTATCGGGCCGTGGC 61.538 66.667 27.32 16.19 42.67 5.01
2241 2300 2.417516 CAGAGTATCGGGCCGTGG 59.582 66.667 27.32 0.00 42.67 4.94
2242 2301 2.279517 GCAGAGTATCGGGCCGTG 60.280 66.667 27.32 16.65 42.67 4.94
2249 2308 2.050895 CGCCGAGGCAGAGTATCG 60.051 66.667 15.03 0.00 42.06 2.92
2250 2309 2.355244 GCGCCGAGGCAGAGTATC 60.355 66.667 15.03 0.00 42.06 2.24
2251 2310 2.835431 AGCGCCGAGGCAGAGTAT 60.835 61.111 15.03 0.00 42.06 2.12
2252 2311 3.826754 CAGCGCCGAGGCAGAGTA 61.827 66.667 15.03 0.00 42.06 2.59
2266 2325 4.767255 CCACAGTCCCGCTCCAGC 62.767 72.222 0.00 0.00 37.78 4.85
2267 2326 4.087892 CCCACAGTCCCGCTCCAG 62.088 72.222 0.00 0.00 0.00 3.86
2270 2329 4.767255 CAGCCCACAGTCCCGCTC 62.767 72.222 0.00 0.00 0.00 5.03
2273 2332 4.742201 CGACAGCCCACAGTCCCG 62.742 72.222 0.00 0.00 0.00 5.14
2275 2334 3.537206 AAGCGACAGCCCACAGTCC 62.537 63.158 0.00 0.00 46.67 3.85
2276 2335 2.029844 GAAGCGACAGCCCACAGTC 61.030 63.158 0.00 0.00 46.67 3.51
2277 2336 2.031163 GAAGCGACAGCCCACAGT 59.969 61.111 0.00 0.00 46.67 3.55
2278 2337 0.957395 ATTGAAGCGACAGCCCACAG 60.957 55.000 0.00 0.00 46.67 3.66
2279 2338 1.073025 ATTGAAGCGACAGCCCACA 59.927 52.632 0.00 0.00 46.67 4.17
2280 2339 0.955428 TCATTGAAGCGACAGCCCAC 60.955 55.000 0.00 0.00 46.67 4.61
2281 2340 0.955428 GTCATTGAAGCGACAGCCCA 60.955 55.000 0.00 0.00 46.67 5.36
2282 2341 1.648467 GGTCATTGAAGCGACAGCCC 61.648 60.000 0.00 0.00 46.67 5.19
2283 2342 0.955428 TGGTCATTGAAGCGACAGCC 60.955 55.000 0.00 0.00 46.67 4.85
2284 2343 0.874390 TTGGTCATTGAAGCGACAGC 59.126 50.000 0.00 0.00 45.58 4.40
2285 2344 2.416747 TCTTGGTCATTGAAGCGACAG 58.583 47.619 0.00 0.00 33.66 3.51
2286 2345 2.542020 TCTTGGTCATTGAAGCGACA 57.458 45.000 0.00 0.00 33.66 4.35
2287 2346 4.811024 TGATATCTTGGTCATTGAAGCGAC 59.189 41.667 3.98 0.00 0.00 5.19
2288 2347 5.022282 TGATATCTTGGTCATTGAAGCGA 57.978 39.130 3.98 0.00 0.00 4.93
2289 2348 5.505286 GTTGATATCTTGGTCATTGAAGCG 58.495 41.667 3.98 0.00 0.00 4.68
2290 2349 5.294306 TCGTTGATATCTTGGTCATTGAAGC 59.706 40.000 3.98 0.00 0.00 3.86
2291 2350 6.018425 CCTCGTTGATATCTTGGTCATTGAAG 60.018 42.308 3.98 0.00 0.00 3.02
2292 2351 5.817296 CCTCGTTGATATCTTGGTCATTGAA 59.183 40.000 3.98 0.00 0.00 2.69
2293 2352 5.359756 CCTCGTTGATATCTTGGTCATTGA 58.640 41.667 3.98 0.00 0.00 2.57
2294 2353 4.512944 CCCTCGTTGATATCTTGGTCATTG 59.487 45.833 3.98 0.00 0.00 2.82
2295 2354 4.708177 CCCTCGTTGATATCTTGGTCATT 58.292 43.478 3.98 0.00 0.00 2.57
2296 2355 3.495100 GCCCTCGTTGATATCTTGGTCAT 60.495 47.826 3.98 0.00 0.00 3.06
2297 2356 2.158957 GCCCTCGTTGATATCTTGGTCA 60.159 50.000 3.98 0.00 0.00 4.02
2298 2357 2.484889 GCCCTCGTTGATATCTTGGTC 58.515 52.381 3.98 0.00 0.00 4.02
2299 2358 1.141053 GGCCCTCGTTGATATCTTGGT 59.859 52.381 3.98 0.00 0.00 3.67
2300 2359 1.543429 GGGCCCTCGTTGATATCTTGG 60.543 57.143 17.04 0.00 0.00 3.61
2301 2360 1.140852 TGGGCCCTCGTTGATATCTTG 59.859 52.381 25.70 0.00 0.00 3.02
2302 2361 1.507140 TGGGCCCTCGTTGATATCTT 58.493 50.000 25.70 0.00 0.00 2.40
2303 2362 1.417890 CTTGGGCCCTCGTTGATATCT 59.582 52.381 25.70 0.00 0.00 1.98
2304 2363 1.543429 CCTTGGGCCCTCGTTGATATC 60.543 57.143 25.70 0.00 0.00 1.63
2305 2364 0.474184 CCTTGGGCCCTCGTTGATAT 59.526 55.000 25.70 0.00 0.00 1.63
2306 2365 0.912487 ACCTTGGGCCCTCGTTGATA 60.912 55.000 25.70 0.00 0.00 2.15
2307 2366 0.912487 TACCTTGGGCCCTCGTTGAT 60.912 55.000 25.70 4.46 0.00 2.57
2308 2367 1.536907 TACCTTGGGCCCTCGTTGA 60.537 57.895 25.70 0.00 0.00 3.18
2309 2368 1.078426 CTACCTTGGGCCCTCGTTG 60.078 63.158 25.70 12.91 0.00 4.10
2310 2369 1.229400 TCTACCTTGGGCCCTCGTT 60.229 57.895 25.70 7.60 0.00 3.85
2311 2370 1.988406 GTCTACCTTGGGCCCTCGT 60.988 63.158 25.70 18.06 0.00 4.18
2312 2371 2.901042 GTCTACCTTGGGCCCTCG 59.099 66.667 25.70 13.80 0.00 4.63
2313 2372 2.901042 CGTCTACCTTGGGCCCTC 59.099 66.667 25.70 0.00 0.00 4.30
2314 2373 3.400054 GCGTCTACCTTGGGCCCT 61.400 66.667 25.70 4.56 0.00 5.19
2315 2374 2.552231 ATTGCGTCTACCTTGGGCCC 62.552 60.000 17.59 17.59 0.00 5.80
2316 2375 0.179468 TATTGCGTCTACCTTGGGCC 59.821 55.000 0.00 0.00 0.00 5.80
2317 2376 1.583054 CTATTGCGTCTACCTTGGGC 58.417 55.000 0.00 0.00 0.00 5.36
2318 2377 1.583054 GCTATTGCGTCTACCTTGGG 58.417 55.000 0.00 0.00 0.00 4.12
2319 2378 1.583054 GGCTATTGCGTCTACCTTGG 58.417 55.000 0.00 0.00 40.82 3.61
2320 2379 1.209128 CGGCTATTGCGTCTACCTTG 58.791 55.000 0.00 0.00 40.82 3.61
2321 2380 0.104304 CCGGCTATTGCGTCTACCTT 59.896 55.000 0.00 0.00 40.82 3.50
2322 2381 0.754217 TCCGGCTATTGCGTCTACCT 60.754 55.000 0.00 0.00 40.82 3.08
2323 2382 0.317479 ATCCGGCTATTGCGTCTACC 59.683 55.000 0.00 0.00 40.82 3.18
2324 2383 1.269621 ACATCCGGCTATTGCGTCTAC 60.270 52.381 0.00 0.00 40.82 2.59
2325 2384 1.037493 ACATCCGGCTATTGCGTCTA 58.963 50.000 0.00 0.00 40.82 2.59
2326 2385 1.000163 CTACATCCGGCTATTGCGTCT 60.000 52.381 0.00 0.00 40.82 4.18
2327 2386 1.000607 TCTACATCCGGCTATTGCGTC 60.001 52.381 0.00 0.00 40.82 5.19
2328 2387 1.000163 CTCTACATCCGGCTATTGCGT 60.000 52.381 0.00 0.00 40.82 5.24
2329 2388 1.702886 CTCTACATCCGGCTATTGCG 58.297 55.000 0.00 0.00 40.82 4.85
2330 2389 1.433534 GCTCTACATCCGGCTATTGC 58.566 55.000 0.00 0.00 38.76 3.56
2331 2390 1.702886 CGCTCTACATCCGGCTATTG 58.297 55.000 0.00 0.00 0.00 1.90
2332 2391 0.038159 GCGCTCTACATCCGGCTATT 60.038 55.000 0.00 0.00 0.00 1.73
2333 2392 1.587054 GCGCTCTACATCCGGCTAT 59.413 57.895 0.00 0.00 0.00 2.97
2334 2393 2.561956 GGCGCTCTACATCCGGCTA 61.562 63.158 7.64 0.00 43.12 3.93
2335 2394 3.917760 GGCGCTCTACATCCGGCT 61.918 66.667 7.64 0.00 43.12 5.52
2338 2397 4.647615 CCCGGCGCTCTACATCCG 62.648 72.222 7.64 0.00 41.41 4.18
2339 2398 3.537874 ACCCGGCGCTCTACATCC 61.538 66.667 7.64 0.00 0.00 3.51
2340 2399 2.279517 CACCCGGCGCTCTACATC 60.280 66.667 7.64 0.00 0.00 3.06
2341 2400 3.075005 ACACCCGGCGCTCTACAT 61.075 61.111 7.64 0.00 0.00 2.29
2342 2401 3.755628 GACACCCGGCGCTCTACA 61.756 66.667 7.64 0.00 0.00 2.74
2343 2402 4.849329 CGACACCCGGCGCTCTAC 62.849 72.222 7.64 0.00 33.91 2.59
2354 2413 4.468689 GTAGGCTGCCCCGACACC 62.469 72.222 16.57 0.00 38.90 4.16
2355 2414 4.468689 GGTAGGCTGCCCCGACAC 62.469 72.222 16.57 5.78 40.64 3.67
2360 2419 3.798511 GACTGGGTAGGCTGCCCC 61.799 72.222 34.09 24.39 45.49 5.80
2361 2420 4.162690 CGACTGGGTAGGCTGCCC 62.163 72.222 31.54 31.54 46.26 5.36
2362 2421 4.162690 CCGACTGGGTAGGCTGCC 62.163 72.222 13.90 13.90 0.00 4.85
2367 2426 3.834799 GGACGCCGACTGGGTAGG 61.835 72.222 0.00 0.00 40.77 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.