Multiple sequence alignment - TraesCS2D01G201400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G201400 chr2D 100.000 3383 0 0 1 3383 153004090 153000708 0.000000e+00 6248.0
1 TraesCS2D01G201400 chr2D 100.000 315 0 0 3726 4040 153000365 153000051 2.090000e-162 582.0
2 TraesCS2D01G201400 chr2D 73.840 776 197 6 1949 2721 75754964 75755736 1.820000e-78 303.0
3 TraesCS2D01G201400 chr2A 92.652 2858 119 31 592 3383 148154987 148157819 0.000000e+00 4030.0
4 TraesCS2D01G201400 chr2A 85.592 1985 260 16 1052 3031 147542860 147540897 0.000000e+00 2058.0
5 TraesCS2D01G201400 chr2A 78.406 1556 298 26 1064 2609 43282149 43280622 0.000000e+00 977.0
6 TraesCS2D01G201400 chr2A 93.169 527 34 1 1 525 17392086 17392612 0.000000e+00 773.0
7 TraesCS2D01G201400 chr2A 72.787 757 196 10 1973 2724 75634995 75634244 8.670000e-62 248.0
8 TraesCS2D01G201400 chr2B 92.809 2795 126 22 590 3345 210933126 210930368 0.000000e+00 3978.0
9 TraesCS2D01G201400 chr2B 86.221 1974 248 15 1049 3018 211187391 211189344 0.000000e+00 2117.0
10 TraesCS2D01G201400 chr2B 97.872 47 1 0 3730 3776 210930322 210930276 9.310000e-12 82.4
11 TraesCS2D01G201400 chr5D 95.636 527 21 1 1 525 202832394 202831868 0.000000e+00 845.0
12 TraesCS2D01G201400 chr5D 93.169 527 34 1 1 525 318490561 318491087 0.000000e+00 773.0
13 TraesCS2D01G201400 chr5D 75.483 518 113 12 2124 2634 515245561 515245051 1.450000e-59 241.0
14 TraesCS2D01G201400 chr7A 95.066 527 23 2 1 525 166866462 166866987 0.000000e+00 826.0
15 TraesCS2D01G201400 chr3D 93.359 527 33 2 1 525 113580459 113579933 0.000000e+00 778.0
16 TraesCS2D01G201400 chr3D 92.979 527 35 1 1 525 522306029 522306555 0.000000e+00 767.0
17 TraesCS2D01G201400 chr3D 92.979 527 35 2 1 525 597463421 597463947 0.000000e+00 767.0
18 TraesCS2D01G201400 chr5B 93.346 526 31 3 1 523 285621546 285622070 0.000000e+00 774.0
19 TraesCS2D01G201400 chr6B 93.169 527 34 1 1 525 649809423 649809949 0.000000e+00 773.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G201400 chr2D 153000051 153004090 4039 True 3415.0 6248 100.0000 1 4040 2 chr2D.!!$R1 4039
1 TraesCS2D01G201400 chr2D 75754964 75755736 772 False 303.0 303 73.8400 1949 2721 1 chr2D.!!$F1 772
2 TraesCS2D01G201400 chr2A 148154987 148157819 2832 False 4030.0 4030 92.6520 592 3383 1 chr2A.!!$F2 2791
3 TraesCS2D01G201400 chr2A 147540897 147542860 1963 True 2058.0 2058 85.5920 1052 3031 1 chr2A.!!$R3 1979
4 TraesCS2D01G201400 chr2A 43280622 43282149 1527 True 977.0 977 78.4060 1064 2609 1 chr2A.!!$R1 1545
5 TraesCS2D01G201400 chr2A 17392086 17392612 526 False 773.0 773 93.1690 1 525 1 chr2A.!!$F1 524
6 TraesCS2D01G201400 chr2A 75634244 75634995 751 True 248.0 248 72.7870 1973 2724 1 chr2A.!!$R2 751
7 TraesCS2D01G201400 chr2B 211187391 211189344 1953 False 2117.0 2117 86.2210 1049 3018 1 chr2B.!!$F1 1969
8 TraesCS2D01G201400 chr2B 210930276 210933126 2850 True 2030.2 3978 95.3405 590 3776 2 chr2B.!!$R1 3186
9 TraesCS2D01G201400 chr5D 202831868 202832394 526 True 845.0 845 95.6360 1 525 1 chr5D.!!$R1 524
10 TraesCS2D01G201400 chr5D 318490561 318491087 526 False 773.0 773 93.1690 1 525 1 chr5D.!!$F1 524
11 TraesCS2D01G201400 chr5D 515245051 515245561 510 True 241.0 241 75.4830 2124 2634 1 chr5D.!!$R2 510
12 TraesCS2D01G201400 chr7A 166866462 166866987 525 False 826.0 826 95.0660 1 525 1 chr7A.!!$F1 524
13 TraesCS2D01G201400 chr3D 113579933 113580459 526 True 778.0 778 93.3590 1 525 1 chr3D.!!$R1 524
14 TraesCS2D01G201400 chr3D 522306029 522306555 526 False 767.0 767 92.9790 1 525 1 chr3D.!!$F1 524
15 TraesCS2D01G201400 chr3D 597463421 597463947 526 False 767.0 767 92.9790 1 525 1 chr3D.!!$F2 524
16 TraesCS2D01G201400 chr5B 285621546 285622070 524 False 774.0 774 93.3460 1 523 1 chr5B.!!$F1 522
17 TraesCS2D01G201400 chr6B 649809423 649809949 526 False 773.0 773 93.1690 1 525 1 chr6B.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 865 0.243095 GCTTTCAGTCGGTACTCGGT 59.757 55.000 0.0 0.0 39.77 4.69 F
2301 2352 1.285950 GCCAAACGGAAGCCTTGAC 59.714 57.895 0.0 0.0 30.99 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 2544 0.375106 GATCGTACAGCCTTGCAAGC 59.625 55.0 21.43 15.79 0.00 4.01 R
3822 3906 0.036105 ACCCCGTGGTTTCGATAACC 60.036 55.0 17.44 17.44 44.75 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
350 354 1.392710 CGGTCTACCTCTCCGCCAAT 61.393 60.000 0.00 0.00 37.90 3.16
402 406 3.128764 TGAGCTCGATATTCACTTCGTGT 59.871 43.478 9.64 0.00 36.74 4.49
419 423 0.835971 TGTGAGAGCAGGTTGCCCTA 60.836 55.000 0.00 0.00 46.52 3.53
463 467 1.634225 CGACGACGCAACAGTTTGT 59.366 52.632 0.00 0.00 34.90 2.83
525 529 3.255149 GGAGTTTCGGTTCAGTCTCTGTA 59.745 47.826 0.00 0.00 32.61 2.74
526 530 4.082136 GGAGTTTCGGTTCAGTCTCTGTAT 60.082 45.833 0.00 0.00 32.61 2.29
527 531 5.125097 GGAGTTTCGGTTCAGTCTCTGTATA 59.875 44.000 0.00 0.00 32.61 1.47
528 532 6.183360 GGAGTTTCGGTTCAGTCTCTGTATAT 60.183 42.308 0.00 0.00 32.61 0.86
529 533 7.013083 GGAGTTTCGGTTCAGTCTCTGTATATA 59.987 40.741 0.00 0.00 32.61 0.86
530 534 8.466617 AGTTTCGGTTCAGTCTCTGTATATAT 57.533 34.615 0.00 0.00 32.61 0.86
531 535 9.570468 AGTTTCGGTTCAGTCTCTGTATATATA 57.430 33.333 0.00 0.00 32.61 0.86
534 538 7.986562 TCGGTTCAGTCTCTGTATATATATGC 58.013 38.462 5.44 4.69 32.61 3.14
535 539 6.907748 CGGTTCAGTCTCTGTATATATATGCG 59.092 42.308 5.44 1.72 32.61 4.73
536 540 6.693545 GGTTCAGTCTCTGTATATATATGCGC 59.306 42.308 0.00 0.00 32.61 6.09
537 541 7.251281 GTTCAGTCTCTGTATATATATGCGCA 58.749 38.462 14.96 14.96 32.61 6.09
538 542 6.786207 TCAGTCTCTGTATATATATGCGCAC 58.214 40.000 14.90 0.00 32.61 5.34
539 543 5.974158 CAGTCTCTGTATATATATGCGCACC 59.026 44.000 14.90 0.00 0.00 5.01
540 544 5.652452 AGTCTCTGTATATATATGCGCACCA 59.348 40.000 14.90 3.44 0.00 4.17
541 545 5.974158 GTCTCTGTATATATATGCGCACCAG 59.026 44.000 14.90 8.86 0.00 4.00
542 546 4.682787 TCTGTATATATATGCGCACCAGC 58.317 43.478 14.90 0.00 37.71 4.85
549 553 2.361483 TGCGCACCAGCATCCAAT 60.361 55.556 5.66 0.00 42.92 3.16
550 554 2.409055 TGCGCACCAGCATCCAATC 61.409 57.895 5.66 0.00 42.92 2.67
551 555 2.409055 GCGCACCAGCATCCAATCA 61.409 57.895 0.30 0.00 42.27 2.57
552 556 1.936436 GCGCACCAGCATCCAATCAA 61.936 55.000 0.30 0.00 42.27 2.57
553 557 0.742505 CGCACCAGCATCCAATCAAT 59.257 50.000 0.00 0.00 42.27 2.57
554 558 1.948834 CGCACCAGCATCCAATCAATA 59.051 47.619 0.00 0.00 42.27 1.90
555 559 2.287188 CGCACCAGCATCCAATCAATAC 60.287 50.000 0.00 0.00 42.27 1.89
556 560 2.689471 GCACCAGCATCCAATCAATACA 59.311 45.455 0.00 0.00 41.58 2.29
557 561 3.130869 GCACCAGCATCCAATCAATACAA 59.869 43.478 0.00 0.00 41.58 2.41
558 562 4.675510 CACCAGCATCCAATCAATACAAC 58.324 43.478 0.00 0.00 0.00 3.32
559 563 4.158209 CACCAGCATCCAATCAATACAACA 59.842 41.667 0.00 0.00 0.00 3.33
560 564 4.771577 ACCAGCATCCAATCAATACAACAA 59.228 37.500 0.00 0.00 0.00 2.83
561 565 5.245751 ACCAGCATCCAATCAATACAACAAA 59.754 36.000 0.00 0.00 0.00 2.83
562 566 6.070653 ACCAGCATCCAATCAATACAACAAAT 60.071 34.615 0.00 0.00 0.00 2.32
563 567 7.123997 ACCAGCATCCAATCAATACAACAAATA 59.876 33.333 0.00 0.00 0.00 1.40
564 568 8.145767 CCAGCATCCAATCAATACAACAAATAT 58.854 33.333 0.00 0.00 0.00 1.28
565 569 9.537192 CAGCATCCAATCAATACAACAAATATT 57.463 29.630 0.00 0.00 0.00 1.28
566 570 9.537192 AGCATCCAATCAATACAACAAATATTG 57.463 29.630 0.00 0.00 40.11 1.90
629 633 4.072088 GCGACAGTGCCGAAACCG 62.072 66.667 1.91 0.00 0.00 4.44
630 634 4.072088 CGACAGTGCCGAAACCGC 62.072 66.667 0.00 0.00 0.00 5.68
666 670 4.827284 ACGGATGTGGAAATCTGAAGTTTT 59.173 37.500 0.16 0.00 36.58 2.43
668 672 6.488683 ACGGATGTGGAAATCTGAAGTTTTTA 59.511 34.615 0.16 0.00 36.58 1.52
684 688 8.840321 TGAAGTTTTTAACTCCAAATCTCTCAG 58.160 33.333 0.00 0.00 41.91 3.35
687 691 9.579932 AGTTTTTAACTCCAAATCTCTCAGATT 57.420 29.630 0.00 0.00 41.28 2.40
846 864 0.797249 CGCTTTCAGTCGGTACTCGG 60.797 60.000 0.00 0.00 39.77 4.63
847 865 0.243095 GCTTTCAGTCGGTACTCGGT 59.757 55.000 0.00 0.00 39.77 4.69
848 866 1.470098 GCTTTCAGTCGGTACTCGGTA 59.530 52.381 0.00 0.00 39.77 4.02
849 867 2.730402 GCTTTCAGTCGGTACTCGGTAC 60.730 54.545 5.84 5.84 38.19 3.34
881 899 2.617274 GCCACAAGCCGTCAAGTCC 61.617 63.158 0.00 0.00 34.35 3.85
906 924 4.280677 CCTGAATTTTGCCTTACCACTTGA 59.719 41.667 0.00 0.00 0.00 3.02
959 999 4.124351 CGCAGGCAGCACCCATTG 62.124 66.667 1.96 0.00 46.13 2.82
1152 1199 2.437359 AACGGCCTGCTCATGCTC 60.437 61.111 0.00 0.00 40.48 4.26
1362 1409 4.074526 GAGCTGCTCTCCACGGCA 62.075 66.667 21.93 0.00 42.07 5.69
1389 1436 4.480480 CAGTTCCTGGGCCTCCTA 57.520 61.111 4.53 0.00 0.00 2.94
1527 1574 2.737376 GTTTCGCTCCGTTCCGCT 60.737 61.111 0.00 0.00 0.00 5.52
1608 1658 2.639327 GGCCATGCAAGTGTGGGTC 61.639 63.158 6.21 0.00 36.00 4.46
1782 1832 2.029073 ACACGCCACTTCGTCCTG 59.971 61.111 0.00 0.00 41.21 3.86
2003 2053 4.821589 CTGGGAGGACGCCTTCGC 62.822 72.222 0.00 0.00 39.84 4.70
2301 2352 1.285950 GCCAAACGGAAGCCTTGAC 59.714 57.895 0.00 0.00 30.99 3.18
2490 2544 1.525306 GCGGTTAGGGGATTTCGGG 60.525 63.158 0.00 0.00 0.00 5.14
2694 2749 2.809601 AACCGCATCGTGCTCGTC 60.810 61.111 8.17 0.00 42.25 4.20
2771 2826 3.655777 AGGATTCCAAGTGGGTTTAGTCA 59.344 43.478 5.29 0.00 38.11 3.41
2775 2830 3.256704 TCCAAGTGGGTTTAGTCAGGAT 58.743 45.455 0.00 0.00 38.11 3.24
2961 3016 4.830600 GGGGACTTCAACCAGAAAATGTTA 59.169 41.667 0.00 0.00 35.40 2.41
2973 3028 5.197549 CAGAAAATGTTACCATACGCATCG 58.802 41.667 0.00 0.00 0.00 3.84
3005 3060 3.877559 TGGGTGCAGTTTCTGATATCTG 58.122 45.455 3.98 3.61 32.44 2.90
3018 3073 3.041211 TGATATCTGTGGAGGAAGGTGG 58.959 50.000 3.98 0.00 0.00 4.61
3098 3153 8.762481 TCCTATACACACATCTATGTTGTACT 57.238 34.615 14.60 9.90 39.39 2.73
3142 3210 7.222000 TGGTTTACCTAATTCATGGTTGAAC 57.778 36.000 0.00 8.37 39.67 3.18
3208 3278 0.039165 CCCGCACAAAAGGAAGAAGC 60.039 55.000 0.00 0.00 0.00 3.86
3212 3282 2.350772 CGCACAAAAGGAAGAAGCGATT 60.351 45.455 0.00 0.00 45.78 3.34
3243 3313 8.730970 TTTTGTTTTATTTTCGGAGGTATTCG 57.269 30.769 0.00 0.00 0.00 3.34
3248 3318 4.931661 ATTTTCGGAGGTATTCGAGCTA 57.068 40.909 0.00 0.00 35.50 3.32
3251 3321 2.160205 TCGGAGGTATTCGAGCTATGG 58.840 52.381 0.00 0.00 35.50 2.74
3351 3435 1.152183 TCTCCCCTAATACCCCGGC 60.152 63.158 0.00 0.00 0.00 6.13
3763 3847 7.716123 TGATTTCTTTGGTGATTTGAAGCAATT 59.284 29.630 0.00 0.00 35.18 2.32
3776 3860 4.843728 TGAAGCAATTCGAAGGGACTAAT 58.156 39.130 3.35 0.00 38.49 1.73
3777 3861 4.635765 TGAAGCAATTCGAAGGGACTAATG 59.364 41.667 3.35 0.00 38.49 1.90
3778 3862 4.222124 AGCAATTCGAAGGGACTAATGT 57.778 40.909 3.35 0.00 38.49 2.71
3779 3863 4.589908 AGCAATTCGAAGGGACTAATGTT 58.410 39.130 3.35 0.00 38.49 2.71
3780 3864 4.636206 AGCAATTCGAAGGGACTAATGTTC 59.364 41.667 3.35 0.00 38.49 3.18
3781 3865 4.636206 GCAATTCGAAGGGACTAATGTTCT 59.364 41.667 3.35 0.00 38.49 3.01
3782 3866 5.447818 GCAATTCGAAGGGACTAATGTTCTG 60.448 44.000 3.35 0.00 38.49 3.02
3783 3867 5.677319 ATTCGAAGGGACTAATGTTCTGA 57.323 39.130 3.35 0.00 38.49 3.27
3784 3868 4.720649 TCGAAGGGACTAATGTTCTGAG 57.279 45.455 0.00 0.00 38.49 3.35
3785 3869 4.341487 TCGAAGGGACTAATGTTCTGAGA 58.659 43.478 0.00 0.00 38.49 3.27
3786 3870 4.956700 TCGAAGGGACTAATGTTCTGAGAT 59.043 41.667 0.00 0.00 38.49 2.75
3787 3871 6.127101 TCGAAGGGACTAATGTTCTGAGATA 58.873 40.000 0.00 0.00 38.49 1.98
3788 3872 6.778069 TCGAAGGGACTAATGTTCTGAGATAT 59.222 38.462 0.00 0.00 38.49 1.63
3789 3873 7.942894 TCGAAGGGACTAATGTTCTGAGATATA 59.057 37.037 0.00 0.00 38.49 0.86
3790 3874 8.577296 CGAAGGGACTAATGTTCTGAGATATAA 58.423 37.037 0.00 0.00 38.49 0.98
3793 3877 9.440761 AGGGACTAATGTTCTGAGATATAAAGT 57.559 33.333 0.00 0.00 36.02 2.66
3807 3891 9.901172 TGAGATATAAAGTAGTTTCCTTTTCCC 57.099 33.333 0.00 0.00 34.20 3.97
3813 3897 7.628501 AAAGTAGTTTCCTTTTCCCTAGAGA 57.371 36.000 0.00 0.00 0.00 3.10
3814 3898 7.816300 AAGTAGTTTCCTTTTCCCTAGAGAT 57.184 36.000 0.00 0.00 0.00 2.75
3815 3899 7.189079 AGTAGTTTCCTTTTCCCTAGAGATG 57.811 40.000 0.00 0.00 0.00 2.90
3816 3900 6.960542 AGTAGTTTCCTTTTCCCTAGAGATGA 59.039 38.462 0.00 0.00 0.00 2.92
3817 3901 6.056090 AGTTTCCTTTTCCCTAGAGATGAC 57.944 41.667 0.00 0.00 0.00 3.06
3818 3902 5.045505 AGTTTCCTTTTCCCTAGAGATGACC 60.046 44.000 0.00 0.00 0.00 4.02
3819 3903 3.385115 TCCTTTTCCCTAGAGATGACCC 58.615 50.000 0.00 0.00 0.00 4.46
3820 3904 3.014110 TCCTTTTCCCTAGAGATGACCCT 59.986 47.826 0.00 0.00 0.00 4.34
3821 3905 4.234458 TCCTTTTCCCTAGAGATGACCCTA 59.766 45.833 0.00 0.00 0.00 3.53
3822 3906 4.591072 CCTTTTCCCTAGAGATGACCCTAG 59.409 50.000 0.00 0.00 33.83 3.02
3824 3908 2.803215 TCCCTAGAGATGACCCTAGGT 58.197 52.381 8.29 0.00 46.66 3.08
3825 3909 3.140143 TCCCTAGAGATGACCCTAGGTT 58.860 50.000 8.29 0.00 46.66 3.50
3826 3910 4.322168 TCCCTAGAGATGACCCTAGGTTA 58.678 47.826 8.29 0.00 46.66 2.85
3827 3911 4.926987 TCCCTAGAGATGACCCTAGGTTAT 59.073 45.833 8.29 0.00 46.66 1.89
3828 3912 5.015391 TCCCTAGAGATGACCCTAGGTTATC 59.985 48.000 8.29 9.84 46.66 1.75
3834 3918 4.629092 GATGACCCTAGGTTATCGAAACC 58.371 47.826 16.88 16.88 38.56 3.27
3835 3919 3.443052 TGACCCTAGGTTATCGAAACCA 58.557 45.455 22.86 12.84 42.69 3.67
3836 3920 3.196254 TGACCCTAGGTTATCGAAACCAC 59.804 47.826 22.86 5.51 42.69 4.16
3837 3921 2.167075 ACCCTAGGTTATCGAAACCACG 59.833 50.000 22.86 15.67 42.69 4.94
3838 3922 2.482490 CCCTAGGTTATCGAAACCACGG 60.482 54.545 22.86 20.66 42.69 4.94
3839 3923 2.482490 CCTAGGTTATCGAAACCACGGG 60.482 54.545 22.86 18.12 42.69 5.28
3840 3924 0.251073 AGGTTATCGAAACCACGGGG 59.749 55.000 22.86 0.00 42.69 5.73
3850 3934 3.226242 CCACGGGGTGCTATGCTA 58.774 61.111 0.00 0.00 31.34 3.49
3851 3935 1.524961 CCACGGGGTGCTATGCTAA 59.475 57.895 0.00 0.00 31.34 3.09
3852 3936 0.107410 CCACGGGGTGCTATGCTAAA 60.107 55.000 0.00 0.00 31.34 1.85
3853 3937 1.299541 CACGGGGTGCTATGCTAAAG 58.700 55.000 0.00 0.00 0.00 1.85
3854 3938 1.134521 CACGGGGTGCTATGCTAAAGA 60.135 52.381 0.00 0.00 0.00 2.52
3855 3939 1.139058 ACGGGGTGCTATGCTAAAGAG 59.861 52.381 0.00 0.00 0.00 2.85
3856 3940 1.412710 CGGGGTGCTATGCTAAAGAGA 59.587 52.381 0.00 0.00 0.00 3.10
3857 3941 2.158957 CGGGGTGCTATGCTAAAGAGAA 60.159 50.000 0.00 0.00 0.00 2.87
3858 3942 3.471680 GGGGTGCTATGCTAAAGAGAAG 58.528 50.000 0.00 0.00 0.00 2.85
3859 3943 3.471680 GGGTGCTATGCTAAAGAGAAGG 58.528 50.000 0.00 0.00 0.00 3.46
3860 3944 3.118223 GGGTGCTATGCTAAAGAGAAGGT 60.118 47.826 0.00 0.00 0.00 3.50
3861 3945 3.873952 GGTGCTATGCTAAAGAGAAGGTG 59.126 47.826 0.00 0.00 0.00 4.00
3862 3946 4.383118 GGTGCTATGCTAAAGAGAAGGTGA 60.383 45.833 0.00 0.00 0.00 4.02
3863 3947 5.363939 GTGCTATGCTAAAGAGAAGGTGAT 58.636 41.667 0.00 0.00 0.00 3.06
3864 3948 5.819901 GTGCTATGCTAAAGAGAAGGTGATT 59.180 40.000 0.00 0.00 0.00 2.57
3865 3949 6.317391 GTGCTATGCTAAAGAGAAGGTGATTT 59.683 38.462 0.00 0.00 0.00 2.17
3866 3950 6.886459 TGCTATGCTAAAGAGAAGGTGATTTT 59.114 34.615 0.00 0.00 0.00 1.82
3867 3951 7.066284 TGCTATGCTAAAGAGAAGGTGATTTTC 59.934 37.037 0.00 0.00 0.00 2.29
3868 3952 7.281999 GCTATGCTAAAGAGAAGGTGATTTTCT 59.718 37.037 0.00 0.00 37.59 2.52
3869 3953 6.808008 TGCTAAAGAGAAGGTGATTTTCTG 57.192 37.500 0.00 0.00 35.14 3.02
3870 3954 5.182001 TGCTAAAGAGAAGGTGATTTTCTGC 59.818 40.000 0.00 0.00 35.14 4.26
3871 3955 5.182001 GCTAAAGAGAAGGTGATTTTCTGCA 59.818 40.000 0.00 0.00 35.14 4.41
3872 3956 6.294176 GCTAAAGAGAAGGTGATTTTCTGCAA 60.294 38.462 0.00 0.00 35.14 4.08
3873 3957 5.702349 AAGAGAAGGTGATTTTCTGCAAG 57.298 39.130 0.00 0.00 35.14 4.01
3874 3958 3.505293 AGAGAAGGTGATTTTCTGCAAGC 59.495 43.478 0.00 0.00 35.14 4.01
3875 3959 3.225104 AGAAGGTGATTTTCTGCAAGCA 58.775 40.909 0.00 0.00 33.79 3.91
3876 3960 3.005155 AGAAGGTGATTTTCTGCAAGCAC 59.995 43.478 0.00 0.00 41.44 4.40
3877 3961 2.590821 AGGTGATTTTCTGCAAGCACT 58.409 42.857 4.67 0.00 41.79 4.40
3878 3962 2.961062 AGGTGATTTTCTGCAAGCACTT 59.039 40.909 4.67 0.00 41.79 3.16
3879 3963 3.054878 GGTGATTTTCTGCAAGCACTTG 58.945 45.455 6.01 6.01 41.79 3.16
3880 3964 3.491447 GGTGATTTTCTGCAAGCACTTGT 60.491 43.478 11.77 0.00 41.79 3.16
3881 3965 4.114794 GTGATTTTCTGCAAGCACTTGTT 58.885 39.130 11.77 0.00 39.49 2.83
3882 3966 4.567959 GTGATTTTCTGCAAGCACTTGTTT 59.432 37.500 11.77 0.00 39.49 2.83
3883 3967 5.063817 GTGATTTTCTGCAAGCACTTGTTTT 59.936 36.000 11.77 0.00 39.49 2.43
3884 3968 5.642919 TGATTTTCTGCAAGCACTTGTTTTT 59.357 32.000 11.77 0.00 42.31 1.94
3907 3991 7.798596 TTTTTATTTTGCAAGGATTCTGCAA 57.201 28.000 8.73 8.73 45.31 4.08
3910 3994 1.330234 TTGCAAGGATTCTGCAAGCA 58.670 45.000 8.73 0.00 42.65 3.91
3911 3995 0.599558 TGCAAGGATTCTGCAAGCAC 59.400 50.000 0.00 0.00 35.46 4.40
3912 3996 0.886563 GCAAGGATTCTGCAAGCACT 59.113 50.000 0.00 0.00 0.00 4.40
3913 3997 1.271656 GCAAGGATTCTGCAAGCACTT 59.728 47.619 0.00 0.00 0.00 3.16
3914 3998 2.925306 GCAAGGATTCTGCAAGCACTTG 60.925 50.000 14.39 14.39 43.14 3.16
3915 3999 2.283145 AGGATTCTGCAAGCACTTGT 57.717 45.000 11.77 0.00 42.31 3.16
3916 4000 2.590821 AGGATTCTGCAAGCACTTGTT 58.409 42.857 11.77 0.00 42.31 2.83
3917 4001 3.754965 AGGATTCTGCAAGCACTTGTTA 58.245 40.909 11.77 1.62 42.31 2.41
3918 4002 4.144297 AGGATTCTGCAAGCACTTGTTAA 58.856 39.130 11.77 4.87 42.31 2.01
3919 4003 4.022849 AGGATTCTGCAAGCACTTGTTAAC 60.023 41.667 11.77 0.00 42.31 2.01
3920 4004 4.261572 GGATTCTGCAAGCACTTGTTAACA 60.262 41.667 3.59 3.59 42.31 2.41
3921 4005 3.969117 TCTGCAAGCACTTGTTAACAG 57.031 42.857 8.56 9.95 42.31 3.16
3922 4006 3.540617 TCTGCAAGCACTTGTTAACAGA 58.459 40.909 8.56 11.82 42.31 3.41
3923 4007 3.944650 TCTGCAAGCACTTGTTAACAGAA 59.055 39.130 8.56 0.00 42.31 3.02
3924 4008 4.580167 TCTGCAAGCACTTGTTAACAGAAT 59.420 37.500 8.56 0.00 42.31 2.40
3925 4009 5.762711 TCTGCAAGCACTTGTTAACAGAATA 59.237 36.000 8.56 0.00 42.31 1.75
3926 4010 6.000891 TGCAAGCACTTGTTAACAGAATAG 57.999 37.500 8.56 5.96 42.31 1.73
3927 4011 5.530915 TGCAAGCACTTGTTAACAGAATAGT 59.469 36.000 8.56 6.62 42.31 2.12
3928 4012 6.039270 TGCAAGCACTTGTTAACAGAATAGTT 59.961 34.615 8.56 0.00 42.31 2.24
3929 4013 6.578919 GCAAGCACTTGTTAACAGAATAGTTC 59.421 38.462 8.56 4.24 42.31 3.01
3930 4014 6.803154 AGCACTTGTTAACAGAATAGTTCC 57.197 37.500 8.56 3.56 33.07 3.62
3931 4015 6.296026 AGCACTTGTTAACAGAATAGTTCCA 58.704 36.000 8.56 0.00 33.07 3.53
3932 4016 6.428159 AGCACTTGTTAACAGAATAGTTCCAG 59.572 38.462 8.56 1.98 33.07 3.86
3933 4017 6.204882 GCACTTGTTAACAGAATAGTTCCAGT 59.795 38.462 8.56 2.61 33.07 4.00
3934 4018 7.255139 GCACTTGTTAACAGAATAGTTCCAGTT 60.255 37.037 8.56 0.00 34.28 3.16
3935 4019 9.268268 CACTTGTTAACAGAATAGTTCCAGTTA 57.732 33.333 8.56 0.00 32.76 2.24
3938 4022 8.697846 TGTTAACAGAATAGTTCCAGTTATCG 57.302 34.615 3.59 0.00 33.53 2.92
3939 4023 7.762615 TGTTAACAGAATAGTTCCAGTTATCGG 59.237 37.037 3.59 0.00 33.53 4.18
3940 4024 5.277857 ACAGAATAGTTCCAGTTATCGGG 57.722 43.478 0.00 0.00 0.00 5.14
3941 4025 4.960469 ACAGAATAGTTCCAGTTATCGGGA 59.040 41.667 0.00 0.00 36.22 5.14
3942 4026 5.163437 ACAGAATAGTTCCAGTTATCGGGAC 60.163 44.000 0.00 0.00 37.63 4.46
3943 4027 4.344390 AGAATAGTTCCAGTTATCGGGACC 59.656 45.833 0.00 0.00 37.63 4.46
3944 4028 1.946984 AGTTCCAGTTATCGGGACCA 58.053 50.000 0.00 0.00 37.63 4.02
3945 4029 2.262637 AGTTCCAGTTATCGGGACCAA 58.737 47.619 0.00 0.00 37.63 3.67
3946 4030 2.640826 AGTTCCAGTTATCGGGACCAAA 59.359 45.455 0.00 0.00 37.63 3.28
3947 4031 3.073356 AGTTCCAGTTATCGGGACCAAAA 59.927 43.478 0.00 0.00 37.63 2.44
3948 4032 3.791953 TCCAGTTATCGGGACCAAAAA 57.208 42.857 0.00 0.00 33.27 1.94
3949 4033 3.414269 TCCAGTTATCGGGACCAAAAAC 58.586 45.455 0.00 0.00 33.27 2.43
3950 4034 3.150767 CCAGTTATCGGGACCAAAAACA 58.849 45.455 0.00 0.00 0.00 2.83
3951 4035 3.057806 CCAGTTATCGGGACCAAAAACAC 60.058 47.826 0.00 0.00 0.00 3.32
3952 4036 3.566322 CAGTTATCGGGACCAAAAACACA 59.434 43.478 0.00 0.00 0.00 3.72
3953 4037 3.566742 AGTTATCGGGACCAAAAACACAC 59.433 43.478 0.00 0.00 0.00 3.82
3954 4038 2.060050 ATCGGGACCAAAAACACACA 57.940 45.000 0.00 0.00 0.00 3.72
3955 4039 1.384525 TCGGGACCAAAAACACACAG 58.615 50.000 0.00 0.00 0.00 3.66
3956 4040 1.099689 CGGGACCAAAAACACACAGT 58.900 50.000 0.00 0.00 0.00 3.55
3957 4041 1.474879 CGGGACCAAAAACACACAGTT 59.525 47.619 0.00 0.00 43.89 3.16
3988 4072 3.961480 AAAAGGAAAATAGGCCAGTGC 57.039 42.857 5.01 0.00 0.00 4.40
3989 4073 2.907458 AAGGAAAATAGGCCAGTGCT 57.093 45.000 5.01 0.00 37.74 4.40
3990 4074 2.907458 AGGAAAATAGGCCAGTGCTT 57.093 45.000 5.01 0.00 37.74 3.91
3991 4075 4.316025 AAGGAAAATAGGCCAGTGCTTA 57.684 40.909 5.01 0.00 37.74 3.09
3992 4076 4.316025 AGGAAAATAGGCCAGTGCTTAA 57.684 40.909 5.01 0.00 37.74 1.85
3993 4077 4.273318 AGGAAAATAGGCCAGTGCTTAAG 58.727 43.478 5.01 0.00 37.74 1.85
3994 4078 3.381590 GGAAAATAGGCCAGTGCTTAAGG 59.618 47.826 5.01 0.00 37.74 2.69
3995 4079 3.739401 AAATAGGCCAGTGCTTAAGGT 57.261 42.857 5.01 0.00 37.74 3.50
3996 4080 3.739401 AATAGGCCAGTGCTTAAGGTT 57.261 42.857 5.01 0.00 37.74 3.50
3997 4081 3.739401 ATAGGCCAGTGCTTAAGGTTT 57.261 42.857 5.01 0.00 37.74 3.27
3998 4082 2.381752 AGGCCAGTGCTTAAGGTTTT 57.618 45.000 5.01 0.00 37.74 2.43
3999 4083 3.518992 AGGCCAGTGCTTAAGGTTTTA 57.481 42.857 5.01 0.00 37.74 1.52
4000 4084 3.154710 AGGCCAGTGCTTAAGGTTTTAC 58.845 45.455 5.01 0.00 37.74 2.01
4001 4085 2.230508 GGCCAGTGCTTAAGGTTTTACC 59.769 50.000 4.29 0.00 36.62 2.85
4002 4086 2.888414 GCCAGTGCTTAAGGTTTTACCA 59.112 45.455 4.29 0.00 35.97 3.25
4003 4087 3.057526 GCCAGTGCTTAAGGTTTTACCAG 60.058 47.826 4.29 0.00 35.97 4.00
4004 4088 3.057526 CCAGTGCTTAAGGTTTTACCAGC 60.058 47.826 4.29 0.00 41.95 4.85
4005 4089 3.568007 CAGTGCTTAAGGTTTTACCAGCA 59.432 43.478 4.29 5.53 40.94 4.41
4006 4090 4.037446 CAGTGCTTAAGGTTTTACCAGCAA 59.963 41.667 9.96 0.00 43.53 3.91
4007 4091 4.037565 AGTGCTTAAGGTTTTACCAGCAAC 59.962 41.667 9.96 6.22 43.53 4.17
4008 4092 4.037565 GTGCTTAAGGTTTTACCAGCAACT 59.962 41.667 9.96 0.00 43.53 3.16
4009 4093 4.037446 TGCTTAAGGTTTTACCAGCAACTG 59.963 41.667 4.29 0.00 40.47 3.16
4010 4094 4.037565 GCTTAAGGTTTTACCAGCAACTGT 59.962 41.667 4.29 0.00 41.95 3.55
4011 4095 5.239963 GCTTAAGGTTTTACCAGCAACTGTA 59.760 40.000 4.29 0.00 41.95 2.74
4012 4096 6.072119 GCTTAAGGTTTTACCAGCAACTGTAT 60.072 38.462 4.29 0.00 41.95 2.29
4013 4097 7.120138 GCTTAAGGTTTTACCAGCAACTGTATA 59.880 37.037 4.29 0.00 41.95 1.47
4014 4098 9.174166 CTTAAGGTTTTACCAGCAACTGTATAT 57.826 33.333 0.00 0.00 41.95 0.86
4015 4099 9.523168 TTAAGGTTTTACCAGCAACTGTATATT 57.477 29.630 0.00 0.00 41.95 1.28
4016 4100 8.417273 AAGGTTTTACCAGCAACTGTATATTT 57.583 30.769 0.00 0.00 41.95 1.40
4017 4101 7.826690 AGGTTTTACCAGCAACTGTATATTTG 58.173 34.615 0.00 0.00 41.95 2.32
4018 4102 7.576856 AGGTTTTACCAGCAACTGTATATTTGC 60.577 37.037 6.45 6.45 41.95 3.68
4024 4108 3.108144 GCAACTGTATATTTGCGCTTGG 58.892 45.455 9.73 0.00 38.86 3.61
4025 4109 3.694734 CAACTGTATATTTGCGCTTGGG 58.305 45.455 9.73 0.00 0.00 4.12
4026 4110 3.275617 ACTGTATATTTGCGCTTGGGA 57.724 42.857 9.73 0.00 0.00 4.37
4027 4111 3.820557 ACTGTATATTTGCGCTTGGGAT 58.179 40.909 9.73 0.00 0.00 3.85
4028 4112 3.815401 ACTGTATATTTGCGCTTGGGATC 59.185 43.478 9.73 0.00 0.00 3.36
4029 4113 3.146066 TGTATATTTGCGCTTGGGATCC 58.854 45.455 9.73 1.92 0.00 3.36
4030 4114 2.664402 ATATTTGCGCTTGGGATCCT 57.336 45.000 12.58 0.00 0.00 3.24
4031 4115 1.679139 TATTTGCGCTTGGGATCCTG 58.321 50.000 12.58 3.69 0.00 3.86
4032 4116 0.323725 ATTTGCGCTTGGGATCCTGT 60.324 50.000 12.58 0.00 0.00 4.00
4033 4117 0.960364 TTTGCGCTTGGGATCCTGTC 60.960 55.000 12.58 0.00 0.00 3.51
4034 4118 1.841302 TTGCGCTTGGGATCCTGTCT 61.841 55.000 12.58 0.00 0.00 3.41
4035 4119 0.975556 TGCGCTTGGGATCCTGTCTA 60.976 55.000 12.58 0.00 0.00 2.59
4036 4120 0.249657 GCGCTTGGGATCCTGTCTAG 60.250 60.000 12.58 2.71 0.00 2.43
4037 4121 0.390860 CGCTTGGGATCCTGTCTAGG 59.609 60.000 12.58 0.00 46.06 3.02
4038 4122 1.501582 GCTTGGGATCCTGTCTAGGT 58.498 55.000 12.58 0.00 44.88 3.08
4039 4123 2.679082 GCTTGGGATCCTGTCTAGGTA 58.321 52.381 12.58 0.00 44.88 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
350 354 4.429212 CGTCGATGGTGCACCGGA 62.429 66.667 30.07 23.07 39.43 5.14
426 430 0.036671 GGAACGTGGAGAACCCGAAT 60.037 55.000 0.00 0.00 37.93 3.34
463 467 6.044754 AGGCAATCCCTTAGTCATCATATCAA 59.955 38.462 0.00 0.00 43.06 2.57
468 472 4.910304 AGTAGGCAATCCCTTAGTCATCAT 59.090 41.667 0.00 0.00 43.06 2.45
532 536 2.361483 ATTGGATGCTGGTGCGCA 60.361 55.556 5.66 5.66 45.10 6.09
533 537 1.936436 TTGATTGGATGCTGGTGCGC 61.936 55.000 0.00 0.00 43.34 6.09
534 538 0.742505 ATTGATTGGATGCTGGTGCG 59.257 50.000 0.00 0.00 43.34 5.34
535 539 2.689471 TGTATTGATTGGATGCTGGTGC 59.311 45.455 0.00 0.00 40.20 5.01
536 540 4.158209 TGTTGTATTGATTGGATGCTGGTG 59.842 41.667 0.00 0.00 0.00 4.17
537 541 4.343231 TGTTGTATTGATTGGATGCTGGT 58.657 39.130 0.00 0.00 0.00 4.00
538 542 4.987408 TGTTGTATTGATTGGATGCTGG 57.013 40.909 0.00 0.00 0.00 4.85
539 543 9.537192 AATATTTGTTGTATTGATTGGATGCTG 57.463 29.630 0.00 0.00 0.00 4.41
540 544 9.537192 CAATATTTGTTGTATTGATTGGATGCT 57.463 29.630 0.75 0.00 40.37 3.79
541 545 9.316730 ACAATATTTGTTGTATTGATTGGATGC 57.683 29.630 11.55 0.00 42.22 3.91
569 573 7.857734 TGTTTGTAGAGAGATTGTTTGACAA 57.142 32.000 0.00 0.00 42.95 3.18
570 574 7.335673 TGTTGTTTGTAGAGAGATTGTTTGACA 59.664 33.333 0.00 0.00 0.00 3.58
571 575 7.693952 TGTTGTTTGTAGAGAGATTGTTTGAC 58.306 34.615 0.00 0.00 0.00 3.18
572 576 7.857734 TGTTGTTTGTAGAGAGATTGTTTGA 57.142 32.000 0.00 0.00 0.00 2.69
573 577 9.817365 CTATGTTGTTTGTAGAGAGATTGTTTG 57.183 33.333 0.00 0.00 0.00 2.93
574 578 8.507249 GCTATGTTGTTTGTAGAGAGATTGTTT 58.493 33.333 0.00 0.00 0.00 2.83
575 579 7.880195 AGCTATGTTGTTTGTAGAGAGATTGTT 59.120 33.333 0.00 0.00 0.00 2.83
576 580 7.390027 AGCTATGTTGTTTGTAGAGAGATTGT 58.610 34.615 0.00 0.00 0.00 2.71
577 581 7.840342 AGCTATGTTGTTTGTAGAGAGATTG 57.160 36.000 0.00 0.00 0.00 2.67
578 582 8.972127 TCTAGCTATGTTGTTTGTAGAGAGATT 58.028 33.333 0.00 0.00 0.00 2.40
579 583 8.526667 TCTAGCTATGTTGTTTGTAGAGAGAT 57.473 34.615 0.00 0.00 0.00 2.75
580 584 7.939784 TCTAGCTATGTTGTTTGTAGAGAGA 57.060 36.000 0.00 0.00 0.00 3.10
581 585 8.462811 TCTTCTAGCTATGTTGTTTGTAGAGAG 58.537 37.037 0.00 0.00 0.00 3.20
582 586 8.244802 GTCTTCTAGCTATGTTGTTTGTAGAGA 58.755 37.037 0.00 0.00 0.00 3.10
583 587 7.489757 GGTCTTCTAGCTATGTTGTTTGTAGAG 59.510 40.741 0.00 0.00 0.00 2.43
584 588 7.321153 GGTCTTCTAGCTATGTTGTTTGTAGA 58.679 38.462 0.00 0.00 0.00 2.59
585 589 6.253727 CGGTCTTCTAGCTATGTTGTTTGTAG 59.746 42.308 0.00 0.00 0.00 2.74
586 590 6.097356 CGGTCTTCTAGCTATGTTGTTTGTA 58.903 40.000 0.00 0.00 0.00 2.41
587 591 4.929808 CGGTCTTCTAGCTATGTTGTTTGT 59.070 41.667 0.00 0.00 0.00 2.83
588 592 4.929808 ACGGTCTTCTAGCTATGTTGTTTG 59.070 41.667 0.00 0.00 0.00 2.93
629 633 0.865769 ATCCGTTGAACGTTGACTGC 59.134 50.000 17.05 0.00 40.58 4.40
630 634 1.864711 ACATCCGTTGAACGTTGACTG 59.135 47.619 17.05 8.47 40.58 3.51
647 651 8.360390 GGAGTTAAAAACTTCAGATTTCCACAT 58.640 33.333 0.00 0.00 43.03 3.21
668 672 7.930865 GCAGTATAATCTGAGAGATTTGGAGTT 59.069 37.037 4.23 0.00 41.90 3.01
684 688 4.637483 TTTGCCTTGCAGCAGTATAATC 57.363 40.909 0.58 0.00 45.13 1.75
687 691 2.164219 GCTTTTGCCTTGCAGCAGTATA 59.836 45.455 0.58 0.00 45.13 1.47
688 692 1.067354 GCTTTTGCCTTGCAGCAGTAT 60.067 47.619 0.58 0.00 45.13 2.12
689 693 0.314935 GCTTTTGCCTTGCAGCAGTA 59.685 50.000 0.58 0.00 45.13 2.74
821 839 0.386478 ACCGACTGAAAGCGACGTAC 60.386 55.000 0.00 0.00 37.60 3.67
854 872 4.719616 GCTTGTGGCGCGTTCGAC 62.720 66.667 8.43 0.00 45.94 4.20
873 891 3.552890 GGCAAAATTCAGGTGGACTTGAC 60.553 47.826 0.00 0.00 31.40 3.18
876 894 2.962859 AGGCAAAATTCAGGTGGACTT 58.037 42.857 0.00 0.00 0.00 3.01
881 899 3.573967 AGTGGTAAGGCAAAATTCAGGTG 59.426 43.478 0.00 0.00 0.00 4.00
906 924 2.416701 CCGTTTTCTTGTGTGCTTTGGT 60.417 45.455 0.00 0.00 0.00 3.67
951 991 0.391927 CTTGGCAATGGCAATGGGTG 60.392 55.000 22.31 6.99 46.44 4.61
952 992 0.544833 TCTTGGCAATGGCAATGGGT 60.545 50.000 22.31 0.00 46.44 4.51
953 993 0.614294 TTCTTGGCAATGGCAATGGG 59.386 50.000 22.31 11.39 46.44 4.00
954 994 1.002201 TGTTCTTGGCAATGGCAATGG 59.998 47.619 22.31 12.10 46.44 3.16
955 995 2.028839 TCTGTTCTTGGCAATGGCAATG 60.029 45.455 22.31 15.68 46.44 2.82
956 996 2.232941 CTCTGTTCTTGGCAATGGCAAT 59.767 45.455 22.31 0.00 46.44 3.56
957 997 1.614903 CTCTGTTCTTGGCAATGGCAA 59.385 47.619 20.91 20.91 45.54 4.52
958 998 1.250328 CTCTGTTCTTGGCAATGGCA 58.750 50.000 5.05 5.05 43.71 4.92
959 999 0.108945 GCTCTGTTCTTGGCAATGGC 60.109 55.000 0.00 0.00 40.13 4.40
996 1040 2.825836 GGGTGGAGAAGCATGGCG 60.826 66.667 0.00 0.00 0.00 5.69
1026 1070 1.315981 CGAGGAGCAGGTGCAGAGTA 61.316 60.000 4.48 0.00 45.16 2.59
1034 1078 3.699894 CAGCCACGAGGAGCAGGT 61.700 66.667 1.86 0.00 36.89 4.00
1152 1199 2.282110 TGGATGGTGCCGTTGGTG 60.282 61.111 0.00 0.00 0.00 4.17
1362 1409 3.184291 AGGAACTGGCCTGGCATT 58.816 55.556 22.05 11.36 37.18 3.56
1527 1574 2.046411 TCGTAGTACCCGGCGTCA 60.046 61.111 6.01 0.00 0.00 4.35
1559 1609 0.250234 CAGGCTCAGATTCCGGAACA 59.750 55.000 21.56 0.00 0.00 3.18
2120 2171 1.429148 CTTTACGGCGACCTCCATGC 61.429 60.000 16.62 0.00 0.00 4.06
2301 2352 7.713764 TGACGATCCATCATACAAGTATTTG 57.286 36.000 0.00 0.00 40.24 2.32
2490 2544 0.375106 GATCGTACAGCCTTGCAAGC 59.625 55.000 21.43 15.79 0.00 4.01
2771 2826 1.765314 GCACCAGTGAGACCATATCCT 59.235 52.381 0.99 0.00 0.00 3.24
2775 2830 1.937191 TCAGCACCAGTGAGACCATA 58.063 50.000 0.99 0.00 0.00 2.74
2826 2881 0.614812 GCATGGTTGGCCTTCCATTT 59.385 50.000 23.14 7.93 43.05 2.32
2961 3016 1.298116 CGTCGACGATGCGTATGGT 60.298 57.895 33.35 0.00 41.37 3.55
3005 3060 0.251341 ACATTGCCACCTTCCTCCAC 60.251 55.000 0.00 0.00 0.00 4.02
3018 3073 2.989422 ACTTACCGCAAGAACATTGC 57.011 45.000 2.52 2.52 41.71 3.56
3098 3153 5.039920 CCATCAGGTCATACATTTCAGGA 57.960 43.478 0.00 0.00 0.00 3.86
3132 3200 5.647658 TCTGTTTATAGGCAGTTCAACCATG 59.352 40.000 5.80 0.00 34.57 3.66
3142 3210 5.565592 TGCATTGTTCTGTTTATAGGCAG 57.434 39.130 0.00 0.00 0.00 4.85
3208 3278 8.929004 CCGAAAATAAAACAAAAACACAAATCG 58.071 29.630 0.00 0.00 0.00 3.34
3212 3282 7.603024 ACCTCCGAAAATAAAACAAAAACACAA 59.397 29.630 0.00 0.00 0.00 3.33
3243 3313 4.036971 AGAGATACGTGTGTTCCATAGCTC 59.963 45.833 0.00 0.00 0.00 4.09
3248 3318 6.321435 TCTGAATAGAGATACGTGTGTTCCAT 59.679 38.462 0.00 0.00 0.00 3.41
3251 3321 6.194876 CGTTCTGAATAGAGATACGTGTGTTC 59.805 42.308 0.00 0.00 33.70 3.18
3287 3368 6.591750 TCCTATAATTAAGGCGAGAGAAGG 57.408 41.667 8.17 0.00 33.84 3.46
3328 3412 2.691850 CGGGGTATTAGGGGAGAGAACA 60.692 54.545 0.00 0.00 0.00 3.18
3341 3425 0.179051 TTTATTCGCGCCGGGGTATT 60.179 50.000 20.83 7.82 0.00 1.89
3351 3435 0.375454 TGGCGGAATGTTTATTCGCG 59.625 50.000 0.00 0.00 42.93 5.87
3725 3809 2.038387 AGAAATCACGAAATCCCGGG 57.962 50.000 16.85 16.85 0.00 5.73
3726 3810 3.427503 CCAAAGAAATCACGAAATCCCGG 60.428 47.826 0.00 0.00 0.00 5.73
3727 3811 3.190535 ACCAAAGAAATCACGAAATCCCG 59.809 43.478 0.00 0.00 0.00 5.14
3728 3812 4.217550 TCACCAAAGAAATCACGAAATCCC 59.782 41.667 0.00 0.00 0.00 3.85
3763 3847 4.341487 TCTCAGAACATTAGTCCCTTCGA 58.659 43.478 0.00 0.00 0.00 3.71
3781 3865 9.901172 GGGAAAAGGAAACTACTTTATATCTCA 57.099 33.333 0.00 0.00 42.68 3.27
3787 3871 9.335211 TCTCTAGGGAAAAGGAAACTACTTTAT 57.665 33.333 0.00 0.00 42.68 1.40
3788 3872 8.731591 TCTCTAGGGAAAAGGAAACTACTTTA 57.268 34.615 0.00 0.00 42.68 1.85
3789 3873 7.628501 TCTCTAGGGAAAAGGAAACTACTTT 57.371 36.000 0.00 0.00 42.68 2.66
3790 3874 7.458170 TCATCTCTAGGGAAAAGGAAACTACTT 59.542 37.037 0.00 0.00 42.68 2.24
3791 3875 6.960542 TCATCTCTAGGGAAAAGGAAACTACT 59.039 38.462 0.00 0.00 42.68 2.57
3792 3876 7.042950 GTCATCTCTAGGGAAAAGGAAACTAC 58.957 42.308 0.00 0.00 42.68 2.73
3793 3877 6.156429 GGTCATCTCTAGGGAAAAGGAAACTA 59.844 42.308 0.00 0.00 42.68 2.24
3795 3879 5.186942 GGTCATCTCTAGGGAAAAGGAAAC 58.813 45.833 0.00 0.00 0.00 2.78
3796 3880 4.227527 GGGTCATCTCTAGGGAAAAGGAAA 59.772 45.833 0.00 0.00 0.00 3.13
3797 3881 3.780850 GGGTCATCTCTAGGGAAAAGGAA 59.219 47.826 0.00 0.00 0.00 3.36
3798 3882 3.014110 AGGGTCATCTCTAGGGAAAAGGA 59.986 47.826 0.00 0.00 0.00 3.36
3799 3883 3.388913 AGGGTCATCTCTAGGGAAAAGG 58.611 50.000 0.00 0.00 0.00 3.11
3800 3884 4.591072 CCTAGGGTCATCTCTAGGGAAAAG 59.409 50.000 12.02 0.00 45.41 2.27
3801 3885 4.557705 CCTAGGGTCATCTCTAGGGAAAA 58.442 47.826 12.02 0.00 45.41 2.29
3802 3886 4.200447 CCTAGGGTCATCTCTAGGGAAA 57.800 50.000 12.02 0.00 45.41 3.13
3803 3887 3.905493 CCTAGGGTCATCTCTAGGGAA 57.095 52.381 12.02 0.00 45.41 3.97
3807 3891 5.806818 TCGATAACCTAGGGTCATCTCTAG 58.193 45.833 14.81 0.72 33.12 2.43
3808 3892 5.837770 TCGATAACCTAGGGTCATCTCTA 57.162 43.478 14.81 0.00 33.12 2.43
3809 3893 4.726035 TCGATAACCTAGGGTCATCTCT 57.274 45.455 14.81 0.00 33.12 3.10
3810 3894 5.509332 GGTTTCGATAACCTAGGGTCATCTC 60.509 48.000 14.81 1.23 33.12 2.75
3811 3895 4.344390 GGTTTCGATAACCTAGGGTCATCT 59.656 45.833 14.81 0.00 33.12 2.90
3812 3896 4.100498 TGGTTTCGATAACCTAGGGTCATC 59.900 45.833 21.90 11.06 40.88 2.92
3813 3897 4.035112 TGGTTTCGATAACCTAGGGTCAT 58.965 43.478 21.90 2.52 40.88 3.06
3814 3898 3.196254 GTGGTTTCGATAACCTAGGGTCA 59.804 47.826 21.90 0.00 40.88 4.02
3815 3899 3.736126 CGTGGTTTCGATAACCTAGGGTC 60.736 52.174 21.90 7.34 40.88 4.46
3816 3900 2.167075 CGTGGTTTCGATAACCTAGGGT 59.833 50.000 21.90 9.77 40.88 4.34
3817 3901 2.482490 CCGTGGTTTCGATAACCTAGGG 60.482 54.545 21.90 18.69 40.88 3.53
3818 3902 2.482490 CCCGTGGTTTCGATAACCTAGG 60.482 54.545 21.90 21.74 40.88 3.02
3819 3903 2.482490 CCCCGTGGTTTCGATAACCTAG 60.482 54.545 21.90 16.98 40.88 3.02
3820 3904 1.481772 CCCCGTGGTTTCGATAACCTA 59.518 52.381 21.90 11.42 40.88 3.08
3821 3905 0.251073 CCCCGTGGTTTCGATAACCT 59.749 55.000 21.90 0.00 40.88 3.50
3822 3906 0.036105 ACCCCGTGGTTTCGATAACC 60.036 55.000 17.44 17.44 44.75 2.85
3823 3907 1.081094 CACCCCGTGGTTTCGATAAC 58.919 55.000 0.00 0.00 44.75 1.89
3824 3908 0.674269 GCACCCCGTGGTTTCGATAA 60.674 55.000 0.00 0.00 44.75 1.75
3825 3909 1.078988 GCACCCCGTGGTTTCGATA 60.079 57.895 0.00 0.00 44.75 2.92
3826 3910 1.546589 TAGCACCCCGTGGTTTCGAT 61.547 55.000 1.38 0.00 44.75 3.59
3827 3911 1.546589 ATAGCACCCCGTGGTTTCGA 61.547 55.000 1.38 0.00 44.75 3.71
3828 3912 1.078708 ATAGCACCCCGTGGTTTCG 60.079 57.895 1.38 0.00 44.75 3.46
3829 3913 1.654023 GCATAGCACCCCGTGGTTTC 61.654 60.000 1.38 0.00 44.75 2.78
3830 3914 1.677633 GCATAGCACCCCGTGGTTT 60.678 57.895 1.38 0.00 44.75 3.27
3831 3915 1.268992 TAGCATAGCACCCCGTGGTT 61.269 55.000 1.38 0.00 44.75 3.67
3833 3917 0.107410 TTTAGCATAGCACCCCGTGG 60.107 55.000 0.00 0.00 33.64 4.94
3834 3918 1.134521 TCTTTAGCATAGCACCCCGTG 60.135 52.381 0.00 0.00 36.51 4.94
3835 3919 1.139058 CTCTTTAGCATAGCACCCCGT 59.861 52.381 0.00 0.00 0.00 5.28
3836 3920 1.412710 TCTCTTTAGCATAGCACCCCG 59.587 52.381 0.00 0.00 0.00 5.73
3837 3921 3.471680 CTTCTCTTTAGCATAGCACCCC 58.528 50.000 0.00 0.00 0.00 4.95
3838 3922 3.118223 ACCTTCTCTTTAGCATAGCACCC 60.118 47.826 0.00 0.00 0.00 4.61
3839 3923 3.873952 CACCTTCTCTTTAGCATAGCACC 59.126 47.826 0.00 0.00 0.00 5.01
3840 3924 4.759782 TCACCTTCTCTTTAGCATAGCAC 58.240 43.478 0.00 0.00 0.00 4.40
3841 3925 5.620738 ATCACCTTCTCTTTAGCATAGCA 57.379 39.130 0.00 0.00 0.00 3.49
3842 3926 6.934048 AAATCACCTTCTCTTTAGCATAGC 57.066 37.500 0.00 0.00 0.00 2.97
3843 3927 8.610896 CAGAAAATCACCTTCTCTTTAGCATAG 58.389 37.037 0.00 0.00 30.58 2.23
3844 3928 7.066284 GCAGAAAATCACCTTCTCTTTAGCATA 59.934 37.037 0.00 0.00 30.58 3.14
3845 3929 6.127786 GCAGAAAATCACCTTCTCTTTAGCAT 60.128 38.462 0.00 0.00 30.58 3.79
3846 3930 5.182001 GCAGAAAATCACCTTCTCTTTAGCA 59.818 40.000 0.00 0.00 30.58 3.49
3847 3931 5.182001 TGCAGAAAATCACCTTCTCTTTAGC 59.818 40.000 0.00 0.00 30.58 3.09
3848 3932 6.808008 TGCAGAAAATCACCTTCTCTTTAG 57.192 37.500 0.00 0.00 30.58 1.85
3849 3933 6.294176 GCTTGCAGAAAATCACCTTCTCTTTA 60.294 38.462 0.00 0.00 30.58 1.85
3850 3934 5.508657 GCTTGCAGAAAATCACCTTCTCTTT 60.509 40.000 0.00 0.00 30.58 2.52
3851 3935 4.022503 GCTTGCAGAAAATCACCTTCTCTT 60.023 41.667 0.00 0.00 30.58 2.85
3852 3936 3.505293 GCTTGCAGAAAATCACCTTCTCT 59.495 43.478 0.00 0.00 30.58 3.10
3853 3937 3.254166 TGCTTGCAGAAAATCACCTTCTC 59.746 43.478 0.00 0.00 30.58 2.87
3854 3938 3.005155 GTGCTTGCAGAAAATCACCTTCT 59.995 43.478 0.00 0.00 33.31 2.85
3855 3939 3.005155 AGTGCTTGCAGAAAATCACCTTC 59.995 43.478 0.00 0.00 0.00 3.46
3856 3940 2.961062 AGTGCTTGCAGAAAATCACCTT 59.039 40.909 0.00 0.00 0.00 3.50
3857 3941 2.590821 AGTGCTTGCAGAAAATCACCT 58.409 42.857 0.00 0.00 0.00 4.00
3858 3942 3.054878 CAAGTGCTTGCAGAAAATCACC 58.945 45.455 0.00 0.00 33.45 4.02
3859 3943 3.709987 ACAAGTGCTTGCAGAAAATCAC 58.290 40.909 11.43 0.00 44.03 3.06
3860 3944 4.389890 AACAAGTGCTTGCAGAAAATCA 57.610 36.364 11.43 0.00 44.03 2.57
3861 3945 5.723492 AAAACAAGTGCTTGCAGAAAATC 57.277 34.783 11.43 0.00 44.03 2.17
3883 3967 7.520292 GCTTGCAGAATCCTTGCAAAATAAAAA 60.520 33.333 12.91 0.00 46.05 1.94
3884 3968 6.073112 GCTTGCAGAATCCTTGCAAAATAAAA 60.073 34.615 12.91 0.00 46.05 1.52
3885 3969 5.409214 GCTTGCAGAATCCTTGCAAAATAAA 59.591 36.000 12.91 0.00 46.05 1.40
3886 3970 4.931002 GCTTGCAGAATCCTTGCAAAATAA 59.069 37.500 12.91 0.00 46.05 1.40
3887 3971 4.021280 TGCTTGCAGAATCCTTGCAAAATA 60.021 37.500 12.91 1.53 46.05 1.40
3888 3972 3.244284 TGCTTGCAGAATCCTTGCAAAAT 60.244 39.130 12.91 0.00 46.05 1.82
3889 3973 2.102757 TGCTTGCAGAATCCTTGCAAAA 59.897 40.909 12.91 3.26 46.05 2.44
3890 3974 1.687660 TGCTTGCAGAATCCTTGCAAA 59.312 42.857 12.91 0.00 46.05 3.68
3891 3975 1.000060 GTGCTTGCAGAATCCTTGCAA 60.000 47.619 11.58 11.58 44.88 4.08
3892 3976 0.599558 GTGCTTGCAGAATCCTTGCA 59.400 50.000 0.00 0.00 36.72 4.08
3893 3977 0.886563 AGTGCTTGCAGAATCCTTGC 59.113 50.000 0.00 0.00 0.00 4.01
3894 3978 2.295349 ACAAGTGCTTGCAGAATCCTTG 59.705 45.455 16.18 16.18 44.03 3.61
3895 3979 2.590821 ACAAGTGCTTGCAGAATCCTT 58.409 42.857 11.43 0.00 44.03 3.36
3896 3980 2.283145 ACAAGTGCTTGCAGAATCCT 57.717 45.000 11.43 0.00 44.03 3.24
3897 3981 4.229876 GTTAACAAGTGCTTGCAGAATCC 58.770 43.478 11.43 0.00 44.03 3.01
3898 3982 4.858935 TGTTAACAAGTGCTTGCAGAATC 58.141 39.130 5.64 0.35 44.03 2.52
3899 3983 4.580167 TCTGTTAACAAGTGCTTGCAGAAT 59.420 37.500 10.03 0.00 44.03 2.40
3900 3984 3.944650 TCTGTTAACAAGTGCTTGCAGAA 59.055 39.130 10.03 1.70 44.03 3.02
3901 3985 3.540617 TCTGTTAACAAGTGCTTGCAGA 58.459 40.909 10.03 12.11 44.03 4.26
3902 3986 3.969117 TCTGTTAACAAGTGCTTGCAG 57.031 42.857 10.03 10.30 44.03 4.41
3903 3987 4.916983 ATTCTGTTAACAAGTGCTTGCA 57.083 36.364 10.03 0.00 44.03 4.08
3904 3988 6.002062 ACTATTCTGTTAACAAGTGCTTGC 57.998 37.500 10.03 0.00 44.03 4.01
3905 3989 7.078228 GGAACTATTCTGTTAACAAGTGCTTG 58.922 38.462 10.03 10.09 45.58 4.01
3906 3990 6.770785 TGGAACTATTCTGTTAACAAGTGCTT 59.229 34.615 10.03 0.00 0.00 3.91
3907 3991 6.296026 TGGAACTATTCTGTTAACAAGTGCT 58.704 36.000 10.03 0.00 0.00 4.40
3908 3992 6.204882 ACTGGAACTATTCTGTTAACAAGTGC 59.795 38.462 10.03 8.51 0.00 4.40
3909 3993 7.730364 ACTGGAACTATTCTGTTAACAAGTG 57.270 36.000 10.03 0.00 0.00 3.16
3912 3996 9.146984 CGATAACTGGAACTATTCTGTTAACAA 57.853 33.333 10.03 0.00 34.79 2.83
3913 3997 7.762615 CCGATAACTGGAACTATTCTGTTAACA 59.237 37.037 8.28 8.28 34.79 2.41
3914 3998 7.224167 CCCGATAACTGGAACTATTCTGTTAAC 59.776 40.741 0.00 0.00 34.79 2.01
3915 3999 7.124599 TCCCGATAACTGGAACTATTCTGTTAA 59.875 37.037 9.75 0.00 34.79 2.01
3916 4000 6.608405 TCCCGATAACTGGAACTATTCTGTTA 59.392 38.462 0.00 8.77 35.20 2.41
3917 4001 5.424252 TCCCGATAACTGGAACTATTCTGTT 59.576 40.000 0.00 0.00 33.56 3.16
3918 4002 4.960469 TCCCGATAACTGGAACTATTCTGT 59.040 41.667 0.00 0.00 0.00 3.41
3919 4003 5.290386 GTCCCGATAACTGGAACTATTCTG 58.710 45.833 0.00 0.00 31.58 3.02
3920 4004 4.344390 GGTCCCGATAACTGGAACTATTCT 59.656 45.833 0.00 0.00 34.86 2.40
3921 4005 4.100498 TGGTCCCGATAACTGGAACTATTC 59.900 45.833 0.36 0.00 37.86 1.75
3922 4006 4.035112 TGGTCCCGATAACTGGAACTATT 58.965 43.478 0.36 0.00 37.86 1.73
3923 4007 3.649843 TGGTCCCGATAACTGGAACTAT 58.350 45.455 0.36 0.00 37.86 2.12
3924 4008 3.104519 TGGTCCCGATAACTGGAACTA 57.895 47.619 0.36 0.00 37.86 2.24
3925 4009 1.946984 TGGTCCCGATAACTGGAACT 58.053 50.000 0.36 0.00 37.86 3.01
3926 4010 2.773993 TTGGTCCCGATAACTGGAAC 57.226 50.000 0.00 0.00 37.57 3.62
3927 4011 3.791953 TTTTGGTCCCGATAACTGGAA 57.208 42.857 0.00 0.00 31.58 3.53
3928 4012 3.181442 TGTTTTTGGTCCCGATAACTGGA 60.181 43.478 7.96 0.00 0.00 3.86
3929 4013 3.057806 GTGTTTTTGGTCCCGATAACTGG 60.058 47.826 7.96 0.00 0.00 4.00
3930 4014 3.566322 TGTGTTTTTGGTCCCGATAACTG 59.434 43.478 7.96 0.00 0.00 3.16
3931 4015 3.566742 GTGTGTTTTTGGTCCCGATAACT 59.433 43.478 7.96 0.00 0.00 2.24
3932 4016 3.315749 TGTGTGTTTTTGGTCCCGATAAC 59.684 43.478 1.21 1.21 0.00 1.89
3933 4017 3.552875 TGTGTGTTTTTGGTCCCGATAA 58.447 40.909 0.00 0.00 0.00 1.75
3934 4018 3.142951 CTGTGTGTTTTTGGTCCCGATA 58.857 45.455 0.00 0.00 0.00 2.92
3935 4019 1.953686 CTGTGTGTTTTTGGTCCCGAT 59.046 47.619 0.00 0.00 0.00 4.18
3936 4020 1.340211 ACTGTGTGTTTTTGGTCCCGA 60.340 47.619 0.00 0.00 0.00 5.14
3937 4021 1.099689 ACTGTGTGTTTTTGGTCCCG 58.900 50.000 0.00 0.00 0.00 5.14
3938 4022 3.603158 AAACTGTGTGTTTTTGGTCCC 57.397 42.857 0.00 0.00 45.69 4.46
3939 4023 6.698329 GGTTATAAACTGTGTGTTTTTGGTCC 59.302 38.462 0.00 0.00 45.69 4.46
3940 4024 7.259161 TGGTTATAAACTGTGTGTTTTTGGTC 58.741 34.615 1.50 0.00 45.69 4.02
3941 4025 7.171630 TGGTTATAAACTGTGTGTTTTTGGT 57.828 32.000 1.50 0.00 45.69 3.67
3942 4026 8.480643 TTTGGTTATAAACTGTGTGTTTTTGG 57.519 30.769 1.50 0.00 45.69 3.28
3967 4051 3.903714 AGCACTGGCCTATTTTCCTTTTT 59.096 39.130 3.32 0.00 42.56 1.94
3968 4052 3.510459 AGCACTGGCCTATTTTCCTTTT 58.490 40.909 3.32 0.00 42.56 2.27
3969 4053 3.175438 AGCACTGGCCTATTTTCCTTT 57.825 42.857 3.32 0.00 42.56 3.11
3970 4054 2.907458 AGCACTGGCCTATTTTCCTT 57.093 45.000 3.32 0.00 42.56 3.36
3971 4055 2.907458 AAGCACTGGCCTATTTTCCT 57.093 45.000 3.32 0.00 42.56 3.36
3972 4056 3.381590 CCTTAAGCACTGGCCTATTTTCC 59.618 47.826 3.32 0.00 42.56 3.13
3973 4057 4.017126 ACCTTAAGCACTGGCCTATTTTC 58.983 43.478 3.32 0.00 42.56 2.29
3974 4058 4.047627 ACCTTAAGCACTGGCCTATTTT 57.952 40.909 3.32 0.00 42.56 1.82
3975 4059 3.739401 ACCTTAAGCACTGGCCTATTT 57.261 42.857 3.32 0.00 42.56 1.40
3976 4060 3.739401 AACCTTAAGCACTGGCCTATT 57.261 42.857 3.32 0.00 42.56 1.73
3977 4061 3.739401 AAACCTTAAGCACTGGCCTAT 57.261 42.857 3.32 0.00 42.56 2.57
3978 4062 3.518992 AAAACCTTAAGCACTGGCCTA 57.481 42.857 3.32 0.00 42.56 3.93
3979 4063 2.381752 AAAACCTTAAGCACTGGCCT 57.618 45.000 3.32 0.00 42.56 5.19
3980 4064 2.230508 GGTAAAACCTTAAGCACTGGCC 59.769 50.000 0.00 0.00 36.48 5.36
3981 4065 2.888414 TGGTAAAACCTTAAGCACTGGC 59.112 45.455 0.00 0.00 39.58 4.85
3982 4066 3.057526 GCTGGTAAAACCTTAAGCACTGG 60.058 47.826 0.00 0.00 39.58 4.00
3983 4067 3.568007 TGCTGGTAAAACCTTAAGCACTG 59.432 43.478 5.70 0.00 39.12 3.66
3984 4068 3.827722 TGCTGGTAAAACCTTAAGCACT 58.172 40.909 5.70 0.00 39.12 4.40
3985 4069 4.037565 AGTTGCTGGTAAAACCTTAAGCAC 59.962 41.667 8.60 5.67 42.29 4.40
3986 4070 4.037446 CAGTTGCTGGTAAAACCTTAAGCA 59.963 41.667 5.70 5.70 41.31 3.91
3987 4071 4.037565 ACAGTTGCTGGTAAAACCTTAAGC 59.962 41.667 0.00 0.00 39.58 3.09
3988 4072 5.767816 ACAGTTGCTGGTAAAACCTTAAG 57.232 39.130 0.00 0.00 39.58 1.85
3989 4073 9.523168 AATATACAGTTGCTGGTAAAACCTTAA 57.477 29.630 1.08 0.00 39.58 1.85
3990 4074 9.523168 AAATATACAGTTGCTGGTAAAACCTTA 57.477 29.630 1.08 0.00 39.58 2.69
3991 4075 8.303876 CAAATATACAGTTGCTGGTAAAACCTT 58.696 33.333 1.08 0.00 39.58 3.50
3992 4076 7.826690 CAAATATACAGTTGCTGGTAAAACCT 58.173 34.615 1.08 0.00 39.58 3.50
4004 4088 3.376859 TCCCAAGCGCAAATATACAGTTG 59.623 43.478 11.47 0.33 32.91 3.16
4005 4089 3.616219 TCCCAAGCGCAAATATACAGTT 58.384 40.909 11.47 0.00 0.00 3.16
4006 4090 3.275617 TCCCAAGCGCAAATATACAGT 57.724 42.857 11.47 0.00 0.00 3.55
4007 4091 3.189287 GGATCCCAAGCGCAAATATACAG 59.811 47.826 11.47 0.00 0.00 2.74
4008 4092 3.146066 GGATCCCAAGCGCAAATATACA 58.854 45.455 11.47 0.00 0.00 2.29
4009 4093 3.189287 CAGGATCCCAAGCGCAAATATAC 59.811 47.826 11.47 0.00 0.00 1.47
4010 4094 3.181445 ACAGGATCCCAAGCGCAAATATA 60.181 43.478 11.47 0.00 0.00 0.86
4011 4095 2.233271 CAGGATCCCAAGCGCAAATAT 58.767 47.619 11.47 0.00 0.00 1.28
4012 4096 1.064758 ACAGGATCCCAAGCGCAAATA 60.065 47.619 11.47 0.00 0.00 1.40
4013 4097 0.323725 ACAGGATCCCAAGCGCAAAT 60.324 50.000 11.47 0.00 0.00 2.32
4014 4098 0.960364 GACAGGATCCCAAGCGCAAA 60.960 55.000 11.47 0.00 0.00 3.68
4015 4099 1.377202 GACAGGATCCCAAGCGCAA 60.377 57.895 11.47 0.00 0.00 4.85
4016 4100 0.975556 TAGACAGGATCCCAAGCGCA 60.976 55.000 11.47 0.00 0.00 6.09
4017 4101 0.249657 CTAGACAGGATCCCAAGCGC 60.250 60.000 8.55 0.00 0.00 5.92
4018 4102 0.390860 CCTAGACAGGATCCCAAGCG 59.609 60.000 8.55 0.00 45.91 4.68
4019 4103 1.501582 ACCTAGACAGGATCCCAAGC 58.498 55.000 8.55 0.00 45.91 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.