Multiple sequence alignment - TraesCS2D01G199800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G199800 chr2D 100.000 5045 0 0 1 5045 150921462 150926506 0.000000e+00 9317.0
1 TraesCS2D01G199800 chr2D 91.409 582 39 9 4286 4859 100957235 100956657 0.000000e+00 787.0
2 TraesCS2D01G199800 chr2D 90.928 474 40 3 2361 2832 145734685 145734213 7.130000e-178 634.0
3 TraesCS2D01G199800 chr2D 86.402 353 48 0 1700 2052 145738188 145737836 2.200000e-103 387.0
4 TraesCS2D01G199800 chr2A 92.475 2339 122 17 1809 4129 150450196 150447894 0.000000e+00 3295.0
5 TraesCS2D01G199800 chr2A 84.459 785 104 10 1245 2019 156465791 156466567 0.000000e+00 758.0
6 TraesCS2D01G199800 chr2A 92.961 483 33 1 863 1344 150471860 150471378 0.000000e+00 702.0
7 TraesCS2D01G199800 chr2A 90.554 487 34 4 1340 1817 150457359 150456876 7.130000e-178 634.0
8 TraesCS2D01G199800 chr2A 93.333 390 16 5 444 832 150485860 150485480 7.330000e-158 568.0
9 TraesCS2D01G199800 chr2A 82.615 650 79 11 2610 3246 156480261 156480889 1.240000e-150 544.0
10 TraesCS2D01G199800 chr2A 95.192 312 14 1 65 375 150486171 150485860 4.540000e-135 492.0
11 TraesCS2D01G199800 chr2A 91.738 351 28 1 2010 2359 156479900 156480250 2.110000e-133 486.0
12 TraesCS2D01G199800 chr2A 94.118 51 2 1 828 877 150484486 150484436 5.420000e-10 76.8
13 TraesCS2D01G199800 chr2B 92.049 1132 68 8 2345 3464 209835757 209836878 0.000000e+00 1572.0
14 TraesCS2D01G199800 chr2B 92.566 834 33 11 65 897 209829005 209829810 0.000000e+00 1170.0
15 TraesCS2D01G199800 chr2B 83.931 753 99 13 4120 4859 784757899 784757156 0.000000e+00 701.0
16 TraesCS2D01G199800 chr2B 90.430 512 30 6 1267 1759 209832584 209833095 0.000000e+00 656.0
17 TraesCS2D01G199800 chr2B 95.469 309 14 0 3452 3760 209837928 209838236 1.260000e-135 494.0
18 TraesCS2D01G199800 chr2B 87.651 413 29 14 905 1311 209832191 209832587 1.280000e-125 460.0
19 TraesCS2D01G199800 chr2B 95.620 137 6 0 4906 5042 457382601 457382737 2.360000e-53 220.0
20 TraesCS2D01G199800 chr2B 94.286 140 8 0 4903 5042 457382443 457382582 1.100000e-51 215.0
21 TraesCS2D01G199800 chr2B 96.471 85 3 0 898 982 209832075 209832159 1.890000e-29 141.0
22 TraesCS2D01G199800 chr2B 95.455 66 3 0 1 66 209828898 209828963 6.910000e-19 106.0
23 TraesCS2D01G199800 chr2B 87.654 81 8 2 2196 2276 209833079 209833157 5.380000e-15 93.5
24 TraesCS2D01G199800 chr2B 95.745 47 2 0 2303 2349 209833153 209833199 5.420000e-10 76.8
25 TraesCS2D01G199800 chr2B 100.000 37 0 0 912 948 209832159 209832195 9.060000e-08 69.4
26 TraesCS2D01G199800 chr5D 91.168 736 53 7 4131 4859 555457719 555458449 0.000000e+00 989.0
27 TraesCS2D01G199800 chr6B 89.139 755 66 5 4120 4859 708304238 708304991 0.000000e+00 926.0
28 TraesCS2D01G199800 chr6B 93.571 140 9 0 4903 5042 210773291 210773430 5.120000e-50 209.0
29 TraesCS2D01G199800 chr4A 89.439 748 57 11 4120 4859 706725225 706724492 0.000000e+00 924.0
30 TraesCS2D01G199800 chr4A 88.636 704 51 13 4169 4859 716132601 716133288 0.000000e+00 830.0
31 TraesCS2D01G199800 chr4A 95.652 46 2 0 4048 4093 519158787 519158742 1.950000e-09 75.0
32 TraesCS2D01G199800 chr7D 88.267 750 61 12 4120 4859 478758179 478757447 0.000000e+00 872.0
33 TraesCS2D01G199800 chr7D 91.738 581 43 3 4281 4859 553081860 553081283 0.000000e+00 802.0
34 TraesCS2D01G199800 chr1A 91.610 584 33 6 4281 4859 518742723 518743295 0.000000e+00 793.0
35 TraesCS2D01G199800 chr1A 95.714 140 6 0 4903 5042 426236904 426236765 5.080000e-55 226.0
36 TraesCS2D01G199800 chr1A 94.286 140 7 1 4903 5042 426237058 426236920 3.960000e-51 213.0
37 TraesCS2D01G199800 chr7B 89.033 538 46 11 4284 4814 683458263 683458794 0.000000e+00 654.0
38 TraesCS2D01G199800 chr7B 95.000 140 7 0 4903 5042 57072098 57071959 2.360000e-53 220.0
39 TraesCS2D01G199800 chr7B 94.161 137 8 0 4906 5042 553815011 553815147 5.120000e-50 209.0
40 TraesCS2D01G199800 chr7B 93.571 140 8 1 4903 5042 642279788 642279650 1.840000e-49 207.0
41 TraesCS2D01G199800 chr7A 95.000 140 7 0 4903 5042 543616024 543616163 2.360000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G199800 chr2D 150921462 150926506 5044 False 9317.000000 9317 100.000000 1 5045 1 chr2D.!!$F1 5044
1 TraesCS2D01G199800 chr2D 100956657 100957235 578 True 787.000000 787 91.409000 4286 4859 1 chr2D.!!$R1 573
2 TraesCS2D01G199800 chr2D 145734213 145738188 3975 True 510.500000 634 88.665000 1700 2832 2 chr2D.!!$R2 1132
3 TraesCS2D01G199800 chr2A 150447894 150450196 2302 True 3295.000000 3295 92.475000 1809 4129 1 chr2A.!!$R1 2320
4 TraesCS2D01G199800 chr2A 156465791 156466567 776 False 758.000000 758 84.459000 1245 2019 1 chr2A.!!$F1 774
5 TraesCS2D01G199800 chr2A 156479900 156480889 989 False 515.000000 544 87.176500 2010 3246 2 chr2A.!!$F2 1236
6 TraesCS2D01G199800 chr2A 150484436 150486171 1735 True 378.933333 568 94.214333 65 877 3 chr2A.!!$R4 812
7 TraesCS2D01G199800 chr2B 784757156 784757899 743 True 701.000000 701 83.931000 4120 4859 1 chr2B.!!$R1 739
8 TraesCS2D01G199800 chr2B 209828898 209838236 9338 False 483.870000 1572 93.349000 1 3760 10 chr2B.!!$F1 3759
9 TraesCS2D01G199800 chr5D 555457719 555458449 730 False 989.000000 989 91.168000 4131 4859 1 chr5D.!!$F1 728
10 TraesCS2D01G199800 chr6B 708304238 708304991 753 False 926.000000 926 89.139000 4120 4859 1 chr6B.!!$F2 739
11 TraesCS2D01G199800 chr4A 706724492 706725225 733 True 924.000000 924 89.439000 4120 4859 1 chr4A.!!$R2 739
12 TraesCS2D01G199800 chr4A 716132601 716133288 687 False 830.000000 830 88.636000 4169 4859 1 chr4A.!!$F1 690
13 TraesCS2D01G199800 chr7D 478757447 478758179 732 True 872.000000 872 88.267000 4120 4859 1 chr7D.!!$R1 739
14 TraesCS2D01G199800 chr7D 553081283 553081860 577 True 802.000000 802 91.738000 4281 4859 1 chr7D.!!$R2 578
15 TraesCS2D01G199800 chr1A 518742723 518743295 572 False 793.000000 793 91.610000 4281 4859 1 chr1A.!!$F1 578
16 TraesCS2D01G199800 chr7B 683458263 683458794 531 False 654.000000 654 89.033000 4284 4814 1 chr7B.!!$F2 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 4289 0.175302 ATCTCTTGCAGCGTCAGGAG 59.825 55.000 12.05 12.05 40.33 3.69 F
1014 4416 0.952984 TCGACATGGCGTCAAATGCA 60.953 50.000 22.59 0.00 45.70 3.96 F
1135 4537 1.001020 AATCGCCATTGCCAGTCCA 60.001 52.632 0.00 0.00 0.00 4.02 F
1791 5266 1.160329 ACTTTGACACCGTGCAGCTC 61.160 55.000 0.00 0.00 0.00 4.09 F
3007 11977 1.202359 GCAGAGATCTGGGACTCGAAC 60.202 57.143 11.63 0.00 43.94 3.95 F
3634 13675 0.860618 GTTCGTCTACTACTGCGGCG 60.861 60.000 0.51 0.51 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 11532 0.179215 GCAACGATCTTGCGGAAGTG 60.179 55.000 16.72 8.12 35.58 3.16 R
2997 11966 0.107654 CCATCCCTTGTTCGAGTCCC 60.108 60.000 0.00 0.00 0.00 4.46 R
3121 12097 2.877582 CGCCTTGAAATGCAGCGC 60.878 61.111 0.00 0.00 40.35 5.92 R
3375 12354 4.379243 CGCAAGGTCACCCTCGCT 62.379 66.667 0.00 0.00 38.75 4.93 R
3915 13956 1.441729 CGGTATCACCATGTCGCCT 59.558 57.895 0.00 0.00 38.47 5.52 R
4973 15061 2.636647 TCACATCTTGCAACTCCACA 57.363 45.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.576550 TCCCTAATTGCAGTTGGGTTTTC 59.423 43.478 20.49 0.00 38.95 2.29
88 132 9.996554 TTGTAAGTCACTTCATTCTTTATCTGA 57.003 29.630 0.00 0.00 0.00 3.27
200 244 3.011818 CTGCTGTACATTGCTGGATTGA 58.988 45.455 8.39 0.00 0.00 2.57
350 395 9.113838 ACTAATCAGATCGATTTTACTTTGCAT 57.886 29.630 14.85 0.00 41.83 3.96
409 454 7.587757 CACCGAAAGTTCAGTTCTTGAAATAAG 59.412 37.037 0.00 0.00 46.85 1.73
461 506 4.640647 GGAACAGTTTAACATGAGGATCCC 59.359 45.833 8.55 0.11 0.00 3.85
512 557 0.179234 TGTTTTCACACTCTCCGCCA 59.821 50.000 0.00 0.00 0.00 5.69
522 567 1.047002 CTCTCCGCCATCTTGATCCT 58.953 55.000 0.00 0.00 0.00 3.24
523 568 0.755079 TCTCCGCCATCTTGATCCTG 59.245 55.000 0.00 0.00 0.00 3.86
524 569 0.883814 CTCCGCCATCTTGATCCTGC 60.884 60.000 0.00 0.00 0.00 4.85
525 570 2.249535 CCGCCATCTTGATCCTGCG 61.250 63.158 10.02 10.02 41.51 5.18
526 571 2.249535 CGCCATCTTGATCCTGCGG 61.250 63.158 9.43 0.00 38.46 5.69
527 572 1.153086 GCCATCTTGATCCTGCGGT 60.153 57.895 0.00 0.00 0.00 5.68
528 573 0.749454 GCCATCTTGATCCTGCGGTT 60.749 55.000 0.00 0.00 0.00 4.44
529 574 1.019673 CCATCTTGATCCTGCGGTTG 58.980 55.000 0.00 0.00 0.00 3.77
568 613 4.858850 TGTGATATTCCTGGCTTCACAAT 58.141 39.130 14.26 1.29 42.53 2.71
877 1920 9.376075 CTCTAGCATTTCAGTTCTATTTCTTCA 57.624 33.333 0.00 0.00 0.00 3.02
913 4220 6.474427 CGAGCAATCATAGTGCATTTTGAATT 59.526 34.615 6.45 0.60 44.74 2.17
947 4254 5.779771 TCCCAAGCTGTTTTCCTGATATTTT 59.220 36.000 0.00 0.00 0.00 1.82
963 4270 9.182214 CCTGATATTTTTCAGATTCCTTCTTCA 57.818 33.333 3.10 0.00 44.88 3.02
982 4289 0.175302 ATCTCTTGCAGCGTCAGGAG 59.825 55.000 12.05 12.05 40.33 3.69
983 4290 2.047844 TCTTGCAGCGTCAGGAGC 60.048 61.111 0.00 0.00 0.00 4.70
984 4291 3.123620 CTTGCAGCGTCAGGAGCC 61.124 66.667 0.00 0.00 34.64 4.70
1005 4407 3.630148 GTGGCGATCGACATGGCG 61.630 66.667 29.12 16.88 34.63 5.69
1014 4416 0.952984 TCGACATGGCGTCAAATGCA 60.953 50.000 22.59 0.00 45.70 3.96
1021 4423 1.950216 TGGCGTCAAATGCACAGTTTA 59.050 42.857 0.00 0.00 0.00 2.01
1023 4425 2.916716 GGCGTCAAATGCACAGTTTATG 59.083 45.455 0.00 0.00 0.00 1.90
1038 4440 2.945008 GTTTATGGCTGTGATGCTGCTA 59.055 45.455 0.00 0.00 41.14 3.49
1071 4473 1.424684 ACGTCCTCCTCCCTATACCTC 59.575 57.143 0.00 0.00 0.00 3.85
1104 4506 2.048503 GCGCACAACTACCTCCGT 60.049 61.111 0.30 0.00 0.00 4.69
1135 4537 1.001020 AATCGCCATTGCCAGTCCA 60.001 52.632 0.00 0.00 0.00 4.02
1146 4548 1.226802 CCAGTCCATGCTCTCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
1150 4552 4.147449 CCATGCTCTCGTCGGCCA 62.147 66.667 2.24 0.00 0.00 5.36
1259 4661 4.070552 GCCTCTCCTGCCGTTCGT 62.071 66.667 0.00 0.00 0.00 3.85
1314 4770 2.539081 GCCTGAACCCCTGTCCCTT 61.539 63.158 0.00 0.00 0.00 3.95
1378 4841 2.594303 CAAGGCCAGCCGTCAACA 60.594 61.111 5.01 0.00 41.95 3.33
1470 4939 1.866925 GGAGTTCAACCTTTCGGCG 59.133 57.895 0.00 0.00 0.00 6.46
1499 4968 5.300286 GCACCAGGCTCAAGATTATATTTGT 59.700 40.000 0.00 0.00 40.25 2.83
1538 5013 1.542492 GCAGATAGCAATGGGGATGG 58.458 55.000 0.00 0.00 44.79 3.51
1562 5037 1.733041 GCGAGCGAGTACTGTGCAA 60.733 57.895 16.60 0.00 0.00 4.08
1634 5109 1.827399 GACTGGGCCAAGAACTCCGA 61.827 60.000 16.25 0.00 0.00 4.55
1722 5197 1.227556 GCTGACACTGACAACCCGT 60.228 57.895 0.00 0.00 0.00 5.28
1791 5266 1.160329 ACTTTGACACCGTGCAGCTC 61.160 55.000 0.00 0.00 0.00 4.09
1805 5280 1.986757 AGCTCGTGTCAGGGCTCAT 60.987 57.895 0.00 0.00 0.00 2.90
1950 5427 1.760613 CCATGCCTAGTCCTTAACCGA 59.239 52.381 0.00 0.00 0.00 4.69
1951 5428 2.169769 CCATGCCTAGTCCTTAACCGAA 59.830 50.000 0.00 0.00 0.00 4.30
2053 5530 3.975246 GGCCGTTCGAAATGGACA 58.025 55.556 19.09 0.00 45.51 4.02
2114 6704 1.495579 ATGCAGGACTTCCAGTGCCT 61.496 55.000 6.96 0.00 37.25 4.75
2259 6852 2.291043 GGCCGAGGGAGTCTGGAAA 61.291 63.158 0.00 0.00 0.00 3.13
2365 11319 1.474017 GACGACGATGTCCATTACCG 58.526 55.000 0.00 0.00 32.61 4.02
2383 11337 3.503363 GCCTCGACACCATGCTGC 61.503 66.667 0.00 0.00 0.00 5.25
2386 11340 2.125952 TCGACACCATGCTGCGAG 60.126 61.111 0.00 0.00 0.00 5.03
2517 11471 3.266636 CATACCGCTGGTGTCATACAAA 58.733 45.455 10.01 0.00 36.19 2.83
2527 11481 6.455113 GCTGGTGTCATACAAATACAACTACG 60.455 42.308 0.00 0.00 31.99 3.51
2574 11528 3.204827 CGGAGGAGCCAATTGCCG 61.205 66.667 0.00 2.60 42.71 5.69
2578 11532 4.179579 GGAGCCAATTGCCGTCGC 62.180 66.667 0.00 0.00 42.71 5.19
2612 11578 1.670087 CGTTGCGAAGTCTCTGTCCAT 60.670 52.381 0.00 0.00 0.00 3.41
2720 11686 1.779025 CGGCAGGAATGGATTGAGCG 61.779 60.000 0.00 0.00 0.00 5.03
2798 11764 3.443045 GCAACACGGGGATGGCAG 61.443 66.667 0.00 0.00 0.00 4.85
2880 11846 3.430236 CCATTTTTAAGGATCGTTGGCCC 60.430 47.826 10.86 0.00 0.00 5.80
2898 11864 2.415893 GCCCCAAAAATCAGTGATGTCG 60.416 50.000 6.34 0.00 0.00 4.35
2951 11920 4.783621 GCACCTGATCGGCTGCCA 62.784 66.667 20.29 6.38 35.25 4.92
2968 11937 2.683933 AAGATGTCCGGCTCCCGT 60.684 61.111 0.00 0.00 46.80 5.28
2979 11948 1.896660 GCTCCCGTGGCAAAACTCA 60.897 57.895 0.00 0.00 0.00 3.41
2994 11963 3.883830 AACTCATCGACAAGCAGAGAT 57.116 42.857 0.00 0.00 0.00 2.75
2997 11966 3.181488 ACTCATCGACAAGCAGAGATCTG 60.181 47.826 0.00 5.45 46.40 2.90
3007 11977 1.202359 GCAGAGATCTGGGACTCGAAC 60.202 57.143 11.63 0.00 43.94 3.95
3375 12354 3.285215 GGCGTCGAGGCGATCCTA 61.285 66.667 22.46 0.00 44.46 2.94
3384 12363 2.336809 GCGATCCTAGCGAGGGTG 59.663 66.667 13.44 4.45 43.94 4.61
3428 12407 1.738099 CCAAGGCGACGTCTTCTGG 60.738 63.158 12.63 8.88 0.00 3.86
3429 12408 1.289066 CAAGGCGACGTCTTCTGGA 59.711 57.895 12.63 0.00 0.00 3.86
3457 12436 3.575256 TCCCTACTACATGTTTGACACGT 59.425 43.478 2.30 0.00 0.00 4.49
3459 12438 3.678072 CCTACTACATGTTTGACACGTGG 59.322 47.826 21.57 1.23 45.66 4.94
3625 13666 1.874345 CGGCAGGGTGTTCGTCTACT 61.874 60.000 0.00 0.00 0.00 2.57
3634 13675 0.860618 GTTCGTCTACTACTGCGGCG 60.861 60.000 0.51 0.51 0.00 6.46
3636 13677 1.582937 CGTCTACTACTGCGGCGTG 60.583 63.158 9.37 4.47 0.00 5.34
3685 13726 1.077212 CTCAACAGGGAGGCCATGG 60.077 63.158 7.63 7.63 39.88 3.66
3892 13933 2.740714 GACGTCAATGCCGGCAGTC 61.741 63.158 35.36 29.21 32.28 3.51
3894 13935 2.324330 CGTCAATGCCGGCAGTCAA 61.324 57.895 35.36 19.61 0.00 3.18
3915 13956 3.049674 CGCTTCTTCGCCAAGGCA 61.050 61.111 12.19 0.00 42.06 4.75
4045 14086 5.154215 GAAGCTGCATCACATCTTCTAAC 57.846 43.478 1.02 0.00 44.53 2.34
4046 14087 4.484537 AGCTGCATCACATCTTCTAACT 57.515 40.909 1.02 0.00 0.00 2.24
4047 14088 4.190001 AGCTGCATCACATCTTCTAACTG 58.810 43.478 1.02 0.00 0.00 3.16
4048 14089 4.081254 AGCTGCATCACATCTTCTAACTGA 60.081 41.667 1.02 0.00 0.00 3.41
4049 14090 4.815308 GCTGCATCACATCTTCTAACTGAT 59.185 41.667 0.00 0.00 0.00 2.90
4050 14091 5.296283 GCTGCATCACATCTTCTAACTGATT 59.704 40.000 0.00 0.00 0.00 2.57
4051 14092 6.183360 GCTGCATCACATCTTCTAACTGATTT 60.183 38.462 0.00 0.00 0.00 2.17
4066 14107 8.845227 TCTAACTGATTTCTGTATTTGCAACAA 58.155 29.630 0.00 0.00 0.00 2.83
4078 14119 6.964370 TGTATTTGCAACAACGCATATCTTAC 59.036 34.615 0.00 0.00 42.62 2.34
4079 14120 4.349663 TTGCAACAACGCATATCTTACC 57.650 40.909 0.00 0.00 42.62 2.85
4081 14122 3.753797 TGCAACAACGCATATCTTACCAA 59.246 39.130 0.00 0.00 36.86 3.67
4082 14123 4.142708 TGCAACAACGCATATCTTACCAAG 60.143 41.667 0.00 0.00 36.86 3.61
4135 14180 9.039870 CATGGCAACTGAAAAAGTAAATTTACA 57.960 29.630 26.06 7.30 38.56 2.41
4137 14182 8.470805 TGGCAACTGAAAAAGTAAATTTACAGA 58.529 29.630 26.06 6.11 38.56 3.41
4190 14235 4.933134 TCCATTGGTTTCATCAAGATCCA 58.067 39.130 1.86 0.00 0.00 3.41
4255 14301 2.865343 ACTTCGTAATACGGCCTGAG 57.135 50.000 13.16 6.31 42.81 3.35
4263 14309 3.418684 AATACGGCCTGAGACAAAACT 57.581 42.857 0.00 0.00 0.00 2.66
4279 14331 0.826062 AACTGGCAGCTTTTTGCAGT 59.174 45.000 15.89 0.00 45.86 4.40
4434 14504 9.937577 GAAACTTTTTATACATTTGCAATCGTC 57.062 29.630 0.00 0.00 0.00 4.20
4740 14823 3.876274 TCCTGAAGAGACCGATTTCAG 57.124 47.619 6.50 6.50 44.57 3.02
4859 14947 9.554724 TTTCACTCGCTTCATAAAACATATTTC 57.445 29.630 0.00 0.00 0.00 2.17
4860 14948 8.262715 TCACTCGCTTCATAAAACATATTTCA 57.737 30.769 0.00 0.00 0.00 2.69
4861 14949 8.726068 TCACTCGCTTCATAAAACATATTTCAA 58.274 29.630 0.00 0.00 0.00 2.69
4862 14950 9.507280 CACTCGCTTCATAAAACATATTTCAAT 57.493 29.630 0.00 0.00 0.00 2.57
4891 14979 9.123709 TCATTGAAATAACAATTTGTAACTCGC 57.876 29.630 1.76 0.00 38.25 5.03
4892 14980 9.128107 CATTGAAATAACAATTTGTAACTCGCT 57.872 29.630 1.76 0.00 38.25 4.93
4893 14981 8.722342 TTGAAATAACAATTTGTAACTCGCTC 57.278 30.769 1.76 0.00 0.00 5.03
4894 14982 7.302524 TGAAATAACAATTTGTAACTCGCTCC 58.697 34.615 1.76 0.00 0.00 4.70
4895 14983 6.811253 AATAACAATTTGTAACTCGCTCCA 57.189 33.333 1.76 0.00 0.00 3.86
4896 14984 6.811253 ATAACAATTTGTAACTCGCTCCAA 57.189 33.333 1.76 0.00 0.00 3.53
4897 14985 5.508200 AACAATTTGTAACTCGCTCCAAA 57.492 34.783 1.76 0.00 0.00 3.28
4898 14986 5.508200 ACAATTTGTAACTCGCTCCAAAA 57.492 34.783 0.00 0.00 31.30 2.44
4899 14987 5.897050 ACAATTTGTAACTCGCTCCAAAAA 58.103 33.333 0.00 0.00 31.30 1.94
4900 14988 5.746721 ACAATTTGTAACTCGCTCCAAAAAC 59.253 36.000 0.00 0.00 31.30 2.43
4901 14989 4.966965 TTTGTAACTCGCTCCAAAAACA 57.033 36.364 0.00 0.00 0.00 2.83
4902 14990 4.966965 TTGTAACTCGCTCCAAAAACAA 57.033 36.364 0.00 0.00 0.00 2.83
4903 14991 5.508200 TTGTAACTCGCTCCAAAAACAAT 57.492 34.783 0.00 0.00 0.00 2.71
4904 14992 5.508200 TGTAACTCGCTCCAAAAACAATT 57.492 34.783 0.00 0.00 0.00 2.32
4905 14993 5.897050 TGTAACTCGCTCCAAAAACAATTT 58.103 33.333 0.00 0.00 0.00 1.82
4906 14994 5.746245 TGTAACTCGCTCCAAAAACAATTTG 59.254 36.000 0.00 0.00 0.00 2.32
4907 14995 4.385358 ACTCGCTCCAAAAACAATTTGT 57.615 36.364 0.00 0.00 0.00 2.83
4908 14996 5.508200 ACTCGCTCCAAAAACAATTTGTA 57.492 34.783 1.76 0.00 0.00 2.41
4909 14997 5.897050 ACTCGCTCCAAAAACAATTTGTAA 58.103 33.333 1.76 0.00 0.00 2.41
4910 14998 5.746721 ACTCGCTCCAAAAACAATTTGTAAC 59.253 36.000 1.76 0.00 0.00 2.50
4911 14999 5.897050 TCGCTCCAAAAACAATTTGTAACT 58.103 33.333 1.76 0.00 0.00 2.24
4912 15000 6.334202 TCGCTCCAAAAACAATTTGTAACTT 58.666 32.000 1.76 0.00 0.00 2.66
4913 15001 6.254589 TCGCTCCAAAAACAATTTGTAACTTG 59.745 34.615 1.76 6.79 0.00 3.16
4914 15002 6.035542 CGCTCCAAAAACAATTTGTAACTTGT 59.964 34.615 1.76 0.00 37.19 3.16
4915 15003 7.412455 CGCTCCAAAAACAATTTGTAACTTGTT 60.412 33.333 1.76 7.11 45.03 2.83
4916 15004 8.874816 GCTCCAAAAACAATTTGTAACTTGTTA 58.125 29.630 11.74 0.00 42.98 2.41
4925 15013 9.877178 ACAATTTGTAACTTGTTATTTTGGTGA 57.123 25.926 0.00 0.00 31.74 4.02
4985 15073 9.585099 GAAATATATTTCAATGTGGAGTTGCAA 57.415 29.630 26.36 0.00 44.19 4.08
4986 15074 9.590451 AAATATATTTCAATGTGGAGTTGCAAG 57.410 29.630 0.00 0.00 0.00 4.01
4987 15075 6.839124 ATATTTCAATGTGGAGTTGCAAGA 57.161 33.333 0.00 0.00 0.00 3.02
4988 15076 5.733620 ATTTCAATGTGGAGTTGCAAGAT 57.266 34.783 0.00 0.00 0.00 2.40
4989 15077 4.508461 TTCAATGTGGAGTTGCAAGATG 57.492 40.909 0.00 0.00 0.00 2.90
4990 15078 3.489355 TCAATGTGGAGTTGCAAGATGT 58.511 40.909 0.00 0.00 0.00 3.06
4991 15079 3.253921 TCAATGTGGAGTTGCAAGATGTG 59.746 43.478 0.00 0.00 0.00 3.21
4992 15080 2.636647 TGTGGAGTTGCAAGATGTGA 57.363 45.000 0.00 0.00 0.00 3.58
4993 15081 2.929641 TGTGGAGTTGCAAGATGTGAA 58.070 42.857 0.00 0.00 0.00 3.18
4994 15082 3.286353 TGTGGAGTTGCAAGATGTGAAA 58.714 40.909 0.00 0.00 0.00 2.69
4995 15083 3.066621 TGTGGAGTTGCAAGATGTGAAAC 59.933 43.478 0.00 0.00 45.26 2.78
5004 15092 8.000285 GTTGCAAGATGTGAAACTAATTTCTG 58.000 34.615 0.00 0.00 42.01 3.02
5005 15093 6.151691 TGCAAGATGTGAAACTAATTTCTGC 58.848 36.000 0.00 0.00 44.02 4.26
5006 15094 5.284660 GCAAGATGTGAAACTAATTTCTGCG 59.715 40.000 0.00 0.00 44.02 5.18
5007 15095 6.602179 CAAGATGTGAAACTAATTTCTGCGA 58.398 36.000 0.00 0.00 44.02 5.10
5008 15096 6.801539 AGATGTGAAACTAATTTCTGCGAA 57.198 33.333 0.00 0.00 44.02 4.70
5009 15097 7.202016 AGATGTGAAACTAATTTCTGCGAAA 57.798 32.000 0.00 6.26 44.02 3.46
5010 15098 7.648142 AGATGTGAAACTAATTTCTGCGAAAA 58.352 30.769 7.59 0.00 44.02 2.29
5011 15099 8.299570 AGATGTGAAACTAATTTCTGCGAAAAT 58.700 29.630 7.59 3.21 44.02 1.82
5012 15100 9.554724 GATGTGAAACTAATTTCTGCGAAAATA 57.445 29.630 7.59 4.06 44.02 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.923414 TTCTTCTATTGAGCTAAGAAAACCC 57.077 36.000 4.91 0.00 35.58 4.11
62 63 9.996554 TCAGATAAAGAATGAAGTGACTTACAA 57.003 29.630 0.00 0.00 0.00 2.41
88 132 8.885346 AGAAATACTAGGCAGCCTAAGATTTAT 58.115 33.333 26.42 23.23 35.49 1.40
200 244 5.533903 CAGGAAGCCAGATAACATGCTTATT 59.466 40.000 0.00 0.00 43.63 1.40
382 427 3.202906 TCAAGAACTGAACTTTCGGTGG 58.797 45.455 4.18 0.00 45.62 4.61
409 454 1.089920 ACCGAGTCAAATCTGCATGC 58.910 50.000 11.82 11.82 0.00 4.06
471 516 5.050227 ACATGCCAAATTGAAAATGACAACG 60.050 36.000 0.00 0.00 0.00 4.10
522 567 7.173562 ACATAATTCAAAGTAAGTACAACCGCA 59.826 33.333 0.00 0.00 0.00 5.69
523 568 7.480542 CACATAATTCAAAGTAAGTACAACCGC 59.519 37.037 0.00 0.00 0.00 5.68
524 569 8.714179 TCACATAATTCAAAGTAAGTACAACCG 58.286 33.333 0.00 0.00 0.00 4.44
568 613 0.764271 TCACCCATGTGCAGTTCAGA 59.236 50.000 0.00 0.00 42.46 3.27
672 717 1.482182 TCCGATCCTGGTCTTGATGTG 59.518 52.381 0.00 0.00 0.00 3.21
673 718 1.866015 TCCGATCCTGGTCTTGATGT 58.134 50.000 0.00 0.00 0.00 3.06
877 1920 1.409064 TGATTGCTCGGATAACTCGCT 59.591 47.619 0.00 0.00 0.00 4.93
913 4220 6.462347 GGAAAACAGCTTGGGAAACAGATTTA 60.462 38.462 0.00 0.00 0.00 1.40
947 4254 5.879223 GCAAGAGATGAAGAAGGAATCTGAA 59.121 40.000 0.00 0.00 38.79 3.02
963 4270 0.175302 CTCCTGACGCTGCAAGAGAT 59.825 55.000 0.00 0.00 37.13 2.75
985 4292 3.630148 CATGTCGATCGCCACGCC 61.630 66.667 11.09 0.00 0.00 5.68
986 4293 3.630148 CCATGTCGATCGCCACGC 61.630 66.667 11.09 0.00 0.00 5.34
987 4294 3.630148 GCCATGTCGATCGCCACG 61.630 66.667 11.09 0.00 0.00 4.94
988 4295 3.630148 CGCCATGTCGATCGCCAC 61.630 66.667 11.09 5.00 0.00 5.01
999 4401 0.241749 ACTGTGCATTTGACGCCATG 59.758 50.000 0.00 0.00 0.00 3.66
1005 4407 3.922240 CAGCCATAAACTGTGCATTTGAC 59.078 43.478 0.00 0.00 0.00 3.18
1021 4423 0.253894 TGTAGCAGCATCACAGCCAT 59.746 50.000 0.00 0.00 34.23 4.40
1023 4425 0.942962 GATGTAGCAGCATCACAGCC 59.057 55.000 13.43 0.00 43.38 4.85
1038 4440 1.301716 GGACGTGGTGCACAGATGT 60.302 57.895 20.43 15.41 33.40 3.06
1093 4495 0.393820 TCGGCAAAACGGAGGTAGTT 59.606 50.000 0.00 0.00 0.00 2.24
1104 4506 1.205568 GCGATTGACGTCGGCAAAA 59.794 52.632 19.08 0.00 44.60 2.44
1135 4537 4.148825 GGTGGCCGACGAGAGCAT 62.149 66.667 0.00 0.00 0.00 3.79
1150 4552 2.678934 TTCGTAGGCCAGCTCGGT 60.679 61.111 5.01 0.00 36.97 4.69
1159 4561 2.047560 ACGGTTGGCTTCGTAGGC 60.048 61.111 8.75 8.75 46.64 3.93
1235 4637 4.479993 GCAGGAGAGGCGCATGGT 62.480 66.667 10.83 0.00 0.00 3.55
1378 4841 4.194720 GACGAGGACGCCGCTGAT 62.195 66.667 0.00 0.00 43.96 2.90
1521 4990 0.037303 CGCCATCCCCATTGCTATCT 59.963 55.000 0.00 0.00 0.00 1.98
1524 4993 1.148273 GTCGCCATCCCCATTGCTA 59.852 57.895 0.00 0.00 0.00 3.49
1554 5029 2.743718 CTCCCGACCTTGCACAGT 59.256 61.111 0.00 0.00 0.00 3.55
1764 5239 0.319211 CGGTGTCAAAGTAGGACGCA 60.319 55.000 8.17 0.00 45.23 5.24
1767 5242 1.145803 GCACGGTGTCAAAGTAGGAC 58.854 55.000 10.24 0.00 35.83 3.85
1791 5266 1.142748 GGAGATGAGCCCTGACACG 59.857 63.158 0.00 0.00 0.00 4.49
1950 5427 4.081406 TGCTGACTTGTCCATAAGCATTT 58.919 39.130 8.71 0.00 35.84 2.32
1951 5428 3.441572 GTGCTGACTTGTCCATAAGCATT 59.558 43.478 13.82 0.00 42.14 3.56
2032 5509 1.817941 CCATTTCGAACGGCCCGAT 60.818 57.895 11.71 0.00 35.84 4.18
2053 5530 3.044305 GTCCGCGTCTGCTGCTTT 61.044 61.111 4.92 0.00 39.65 3.51
2114 6704 0.463654 GGCCATGTCGTATTGCTCCA 60.464 55.000 0.00 0.00 0.00 3.86
2259 6852 2.045926 GCCTGCCCTGTCGATGTT 60.046 61.111 0.00 0.00 0.00 2.71
2295 6888 4.713735 TTCTTGCCCGCGATGCCA 62.714 61.111 8.23 0.19 0.00 4.92
2365 11319 2.821366 CAGCATGGTGTCGAGGCC 60.821 66.667 16.80 0.00 0.00 5.19
2383 11337 1.299165 CCACGCCGGTTATCTCTCG 60.299 63.158 1.90 0.00 0.00 4.04
2386 11340 1.588139 CGTCCACGCCGGTTATCTC 60.588 63.158 1.90 0.00 35.57 2.75
2472 11426 0.898789 CGTCGGGATAGTAGCCCCAT 60.899 60.000 17.99 0.00 42.92 4.00
2517 11471 3.581024 TTGACCTTCGCGTAGTTGTAT 57.419 42.857 11.94 0.00 0.00 2.29
2527 11481 2.464459 CGGCCTGATTGACCTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
2574 11528 1.710339 GATCTTGCGGAAGTGCGAC 59.290 57.895 16.72 1.78 37.81 5.19
2578 11532 0.179215 GCAACGATCTTGCGGAAGTG 60.179 55.000 16.72 8.12 35.58 3.16
2612 11578 2.261430 ATTGCCAGCGCCATCTCTCA 62.261 55.000 2.29 0.00 0.00 3.27
2720 11686 1.134670 CCTCCAAGTGAAGGATCGGAC 60.135 57.143 0.00 0.00 33.99 4.79
2790 11756 2.229784 CTCTTTTGTTGGTCTGCCATCC 59.770 50.000 0.00 0.00 45.56 3.51
2798 11764 1.981256 TCCAGGCTCTTTTGTTGGTC 58.019 50.000 0.00 0.00 0.00 4.02
2880 11846 3.837213 AGCGACATCACTGATTTTTGG 57.163 42.857 0.00 0.00 0.00 3.28
2898 11864 1.130561 GGATTGTACACGCCTTCAAGC 59.869 52.381 0.00 0.00 0.00 4.01
2968 11937 1.266718 GCTTGTCGATGAGTTTTGCCA 59.733 47.619 0.00 0.00 0.00 4.92
2979 11948 1.411977 CCCAGATCTCTGCTTGTCGAT 59.588 52.381 0.00 0.00 42.47 3.59
2994 11963 0.178944 TCCCTTGTTCGAGTCCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
2997 11966 0.107654 CCATCCCTTGTTCGAGTCCC 60.108 60.000 0.00 0.00 0.00 4.46
3007 11977 4.972875 GGAGCAGTCCATCCCTTG 57.027 61.111 0.00 0.00 43.31 3.61
3121 12097 2.877582 CGCCTTGAAATGCAGCGC 60.878 61.111 0.00 0.00 40.35 5.92
3375 12354 4.379243 CGCAAGGTCACCCTCGCT 62.379 66.667 0.00 0.00 38.75 4.93
3428 12407 4.715527 AACATGTAGTAGGGAGTTCGTC 57.284 45.455 0.00 0.00 0.00 4.20
3429 12408 4.525487 TCAAACATGTAGTAGGGAGTTCGT 59.475 41.667 0.00 0.00 0.00 3.85
3880 13921 2.361610 CCCTTGACTGCCGGCATT 60.362 61.111 32.87 26.63 0.00 3.56
3915 13956 1.441729 CGGTATCACCATGTCGCCT 59.558 57.895 0.00 0.00 38.47 5.52
3981 14022 4.665212 TCCTACTAACAATCGCGTAGTTG 58.335 43.478 18.54 17.28 0.00 3.16
4045 14086 5.164158 GCGTTGTTGCAAATACAGAAATCAG 60.164 40.000 0.00 0.00 34.15 2.90
4046 14087 4.679197 GCGTTGTTGCAAATACAGAAATCA 59.321 37.500 0.00 0.00 34.15 2.57
4047 14088 4.679197 TGCGTTGTTGCAAATACAGAAATC 59.321 37.500 0.00 0.00 43.02 2.17
4048 14089 4.615949 TGCGTTGTTGCAAATACAGAAAT 58.384 34.783 0.00 0.00 43.02 2.17
4049 14090 4.033990 TGCGTTGTTGCAAATACAGAAA 57.966 36.364 0.00 0.00 43.02 2.52
4050 14091 3.699779 TGCGTTGTTGCAAATACAGAA 57.300 38.095 0.00 0.00 43.02 3.02
4060 14101 4.342772 CTTGGTAAGATATGCGTTGTTGC 58.657 43.478 0.00 0.00 0.00 4.17
4066 14107 3.275617 TTGGCTTGGTAAGATATGCGT 57.724 42.857 0.00 0.00 0.00 5.24
4078 14119 3.420893 TCTGAAACACCTATTGGCTTGG 58.579 45.455 0.00 0.00 36.63 3.61
4079 14120 4.321230 GGTTCTGAAACACCTATTGGCTTG 60.321 45.833 0.00 0.00 37.10 4.01
4081 14122 3.421844 GGTTCTGAAACACCTATTGGCT 58.578 45.455 0.00 0.00 37.10 4.75
4082 14123 2.492088 GGGTTCTGAAACACCTATTGGC 59.508 50.000 7.86 0.00 37.10 4.52
4167 14212 5.521696 TGGATCTTGATGAAACCAATGGAT 58.478 37.500 6.16 0.00 34.24 3.41
4173 14218 3.697542 CTGCATGGATCTTGATGAAACCA 59.302 43.478 0.00 0.00 38.68 3.67
4190 14235 2.082140 TATACCGGGTCAGACTGCAT 57.918 50.000 6.32 0.00 0.00 3.96
4255 14301 2.030823 GCAAAAAGCTGCCAGTTTTGTC 59.969 45.455 23.27 16.36 41.90 3.18
4263 14309 1.881973 CTCTACTGCAAAAAGCTGCCA 59.118 47.619 0.00 0.00 45.14 4.92
4279 14331 8.988060 TCTCAATTCTAACTCTCTCTCTCTCTA 58.012 37.037 0.00 0.00 0.00 2.43
4421 14491 2.592796 TGTCACGACGATTGCAAATG 57.407 45.000 1.71 0.77 0.00 2.32
4427 14497 4.910746 AAAGATCTTGTCACGACGATTG 57.089 40.909 9.17 0.00 0.00 2.67
4434 14504 7.588143 ATCTTGTTCTAAAGATCTTGTCACG 57.412 36.000 9.17 2.97 42.01 4.35
4580 14654 3.988379 AGATTGTTGCGTGTGTGAAAT 57.012 38.095 0.00 0.00 0.00 2.17
4724 14803 3.878160 ACCTCTGAAATCGGTCTCTTC 57.122 47.619 0.00 0.00 0.00 2.87
4865 14953 9.123709 GCGAGTTACAAATTGTTATTTCAATGA 57.876 29.630 3.17 0.00 37.96 2.57
4866 14954 9.128107 AGCGAGTTACAAATTGTTATTTCAATG 57.872 29.630 3.17 0.00 37.96 2.82
4867 14955 9.341899 GAGCGAGTTACAAATTGTTATTTCAAT 57.658 29.630 3.17 0.00 39.35 2.57
4868 14956 7.806014 GGAGCGAGTTACAAATTGTTATTTCAA 59.194 33.333 3.17 0.00 31.63 2.69
4869 14957 7.041030 TGGAGCGAGTTACAAATTGTTATTTCA 60.041 33.333 3.17 0.00 31.63 2.69
4870 14958 7.302524 TGGAGCGAGTTACAAATTGTTATTTC 58.697 34.615 3.17 0.00 31.63 2.17
4871 14959 7.209471 TGGAGCGAGTTACAAATTGTTATTT 57.791 32.000 3.17 0.00 34.29 1.40
4872 14960 6.811253 TGGAGCGAGTTACAAATTGTTATT 57.189 33.333 3.17 0.00 0.00 1.40
4873 14961 6.811253 TTGGAGCGAGTTACAAATTGTTAT 57.189 33.333 3.17 0.00 0.00 1.89
4874 14962 6.621316 TTTGGAGCGAGTTACAAATTGTTA 57.379 33.333 3.17 0.00 0.00 2.41
4875 14963 5.508200 TTTGGAGCGAGTTACAAATTGTT 57.492 34.783 3.17 0.00 0.00 2.83
4876 14964 5.508200 TTTTGGAGCGAGTTACAAATTGT 57.492 34.783 3.43 3.43 33.40 2.71
4877 14965 5.746245 TGTTTTTGGAGCGAGTTACAAATTG 59.254 36.000 0.00 0.00 33.40 2.32
4878 14966 5.897050 TGTTTTTGGAGCGAGTTACAAATT 58.103 33.333 0.00 0.00 33.40 1.82
4879 14967 5.508200 TGTTTTTGGAGCGAGTTACAAAT 57.492 34.783 0.00 0.00 33.40 2.32
4880 14968 4.966965 TGTTTTTGGAGCGAGTTACAAA 57.033 36.364 0.00 0.00 0.00 2.83
4881 14969 4.966965 TTGTTTTTGGAGCGAGTTACAA 57.033 36.364 0.00 0.00 0.00 2.41
4882 14970 5.508200 AATTGTTTTTGGAGCGAGTTACA 57.492 34.783 0.00 0.00 0.00 2.41
4883 14971 5.746721 ACAAATTGTTTTTGGAGCGAGTTAC 59.253 36.000 0.00 0.00 33.92 2.50
4884 14972 5.897050 ACAAATTGTTTTTGGAGCGAGTTA 58.103 33.333 0.00 0.00 33.92 2.24
4885 14973 4.754322 ACAAATTGTTTTTGGAGCGAGTT 58.246 34.783 0.00 0.00 33.92 3.01
4886 14974 4.385358 ACAAATTGTTTTTGGAGCGAGT 57.615 36.364 0.00 0.00 33.92 4.18
4887 14975 5.977129 AGTTACAAATTGTTTTTGGAGCGAG 59.023 36.000 3.17 0.00 33.92 5.03
4888 14976 5.897050 AGTTACAAATTGTTTTTGGAGCGA 58.103 33.333 3.17 0.00 33.92 4.93
4889 14977 6.035542 ACAAGTTACAAATTGTTTTTGGAGCG 59.964 34.615 3.17 0.00 43.76 5.03
4890 14978 7.302350 ACAAGTTACAAATTGTTTTTGGAGC 57.698 32.000 3.17 0.00 43.76 4.70
4959 15047 9.585099 TTGCAACTCCACATTGAAATATATTTC 57.415 29.630 25.14 25.14 44.83 2.17
4960 15048 9.590451 CTTGCAACTCCACATTGAAATATATTT 57.410 29.630 10.51 10.51 0.00 1.40
4961 15049 8.970020 TCTTGCAACTCCACATTGAAATATATT 58.030 29.630 0.00 0.00 0.00 1.28
4962 15050 8.523915 TCTTGCAACTCCACATTGAAATATAT 57.476 30.769 0.00 0.00 0.00 0.86
4963 15051 7.936496 TCTTGCAACTCCACATTGAAATATA 57.064 32.000 0.00 0.00 0.00 0.86
4964 15052 6.839124 TCTTGCAACTCCACATTGAAATAT 57.161 33.333 0.00 0.00 0.00 1.28
4965 15053 6.209192 ACATCTTGCAACTCCACATTGAAATA 59.791 34.615 0.00 0.00 0.00 1.40
4966 15054 5.011329 ACATCTTGCAACTCCACATTGAAAT 59.989 36.000 0.00 0.00 0.00 2.17
4967 15055 4.341806 ACATCTTGCAACTCCACATTGAAA 59.658 37.500 0.00 0.00 0.00 2.69
4968 15056 3.890756 ACATCTTGCAACTCCACATTGAA 59.109 39.130 0.00 0.00 0.00 2.69
4969 15057 3.253921 CACATCTTGCAACTCCACATTGA 59.746 43.478 0.00 0.00 0.00 2.57
4970 15058 3.253921 TCACATCTTGCAACTCCACATTG 59.746 43.478 0.00 0.00 0.00 2.82
4971 15059 3.489355 TCACATCTTGCAACTCCACATT 58.511 40.909 0.00 0.00 0.00 2.71
4972 15060 3.144657 TCACATCTTGCAACTCCACAT 57.855 42.857 0.00 0.00 0.00 3.21
4973 15061 2.636647 TCACATCTTGCAACTCCACA 57.363 45.000 0.00 0.00 0.00 4.17
4974 15062 3.316308 AGTTTCACATCTTGCAACTCCAC 59.684 43.478 0.00 0.00 37.10 4.02
4975 15063 3.554934 AGTTTCACATCTTGCAACTCCA 58.445 40.909 0.00 0.00 37.10 3.86
4976 15064 5.689383 TTAGTTTCACATCTTGCAACTCC 57.311 39.130 0.00 0.00 40.42 3.85
4977 15065 8.078596 AGAAATTAGTTTCACATCTTGCAACTC 58.921 33.333 12.61 0.00 40.42 3.01
4978 15066 7.864379 CAGAAATTAGTTTCACATCTTGCAACT 59.136 33.333 12.61 0.00 44.92 3.16
4979 15067 7.358683 GCAGAAATTAGTTTCACATCTTGCAAC 60.359 37.037 12.61 0.00 44.92 4.17
4980 15068 6.642131 GCAGAAATTAGTTTCACATCTTGCAA 59.358 34.615 12.61 0.00 44.92 4.08
4981 15069 6.151691 GCAGAAATTAGTTTCACATCTTGCA 58.848 36.000 12.61 0.00 44.92 4.08
4982 15070 5.284660 CGCAGAAATTAGTTTCACATCTTGC 59.715 40.000 12.61 10.64 44.92 4.01
4983 15071 6.602179 TCGCAGAAATTAGTTTCACATCTTG 58.398 36.000 12.61 3.01 44.92 3.02
4984 15072 6.801539 TCGCAGAAATTAGTTTCACATCTT 57.198 33.333 12.61 0.00 44.92 2.40
4985 15073 6.801539 TTCGCAGAAATTAGTTTCACATCT 57.198 33.333 12.61 0.00 44.92 2.90
4986 15074 7.851822 TTTTCGCAGAAATTAGTTTCACATC 57.148 32.000 12.61 0.00 44.92 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.