Multiple sequence alignment - TraesCS2D01G198900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G198900 chr2D 100.000 3683 0 0 1 3683 147952455 147956137 0.000000e+00 6802
1 TraesCS2D01G198900 chr2D 82.344 1365 235 6 1263 2624 147426250 147427611 0.000000e+00 1181
2 TraesCS2D01G198900 chr2D 93.019 616 30 7 1 606 80110146 80109534 0.000000e+00 887
3 TraesCS2D01G198900 chr2A 92.754 2774 132 27 616 3343 154423233 154420483 0.000000e+00 3945
4 TraesCS2D01G198900 chr2A 82.711 1365 230 6 1263 2624 155074674 155073313 0.000000e+00 1208
5 TraesCS2D01G198900 chr2A 92.447 609 40 5 1 603 9313607 9312999 0.000000e+00 865
6 TraesCS2D01G198900 chr2B 94.202 2087 84 14 717 2791 207481739 207483800 0.000000e+00 3149
7 TraesCS2D01G198900 chr2B 92.951 610 34 7 1 603 228884833 228884226 0.000000e+00 880
8 TraesCS2D01G198900 chr2B 94.815 135 7 0 2772 2906 207483813 207483947 1.040000e-50 211
9 TraesCS2D01G198900 chr2B 92.079 101 8 0 620 720 207481537 207481637 3.830000e-30 143
10 TraesCS2D01G198900 chr2B 100.000 40 0 0 2891 2930 207483962 207484001 1.420000e-09 75
11 TraesCS2D01G198900 chr3B 90.513 1834 132 18 885 2707 64537986 64539788 0.000000e+00 2385
12 TraesCS2D01G198900 chr3B 92.857 602 37 5 1 598 661736025 661736624 0.000000e+00 869
13 TraesCS2D01G198900 chr3B 84.631 488 63 9 3077 3557 766595637 766595155 3.330000e-130 475
14 TraesCS2D01G198900 chr3B 83.525 522 69 13 3046 3557 815461987 815462501 4.310000e-129 472
15 TraesCS2D01G198900 chr1D 86.603 1672 188 26 1038 2683 483972592 483974253 0.000000e+00 1814
16 TraesCS2D01G198900 chr1A 86.016 1659 202 19 1047 2683 580988268 580989918 0.000000e+00 1751
17 TraesCS2D01G198900 chr1B 85.364 1592 200 19 1088 2659 673992230 673993808 0.000000e+00 1618
18 TraesCS2D01G198900 chr1B 87.554 1390 170 3 1262 2649 674004544 674003156 0.000000e+00 1605
19 TraesCS2D01G198900 chr1B 83.460 526 67 13 3077 3588 419392455 419391936 4.310000e-129 472
20 TraesCS2D01G198900 chr3D 96.198 605 21 2 1 603 320758343 320757739 0.000000e+00 989
21 TraesCS2D01G198900 chr7A 93.279 610 34 6 1 604 554868882 554869490 0.000000e+00 893
22 TraesCS2D01G198900 chr4D 93.115 610 33 6 1 603 421228772 421228165 0.000000e+00 885
23 TraesCS2D01G198900 chr5D 92.562 605 38 6 1 600 317228082 317228684 0.000000e+00 861
24 TraesCS2D01G198900 chr7D 92.182 614 38 9 1 606 422207066 422207677 0.000000e+00 859
25 TraesCS2D01G198900 chr6A 81.395 645 100 15 3044 3675 602997257 602997894 3.280000e-140 508
26 TraesCS2D01G198900 chr6D 82.218 568 80 14 3044 3600 456371356 456371913 1.550000e-128 470
27 TraesCS2D01G198900 chr6D 79.969 649 95 19 3044 3683 182324700 182325322 2.610000e-121 446
28 TraesCS2D01G198900 chr7B 80.744 618 91 16 3077 3683 629026703 629027303 1.210000e-124 457
29 TraesCS2D01G198900 chr5A 82.342 538 75 15 3044 3570 493508431 493507903 2.020000e-122 449
30 TraesCS2D01G198900 chr3A 81.786 560 78 19 3045 3592 336890713 336891260 7.260000e-122 448


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G198900 chr2D 147952455 147956137 3682 False 6802.0 6802 100.000 1 3683 1 chr2D.!!$F2 3682
1 TraesCS2D01G198900 chr2D 147426250 147427611 1361 False 1181.0 1181 82.344 1263 2624 1 chr2D.!!$F1 1361
2 TraesCS2D01G198900 chr2D 80109534 80110146 612 True 887.0 887 93.019 1 606 1 chr2D.!!$R1 605
3 TraesCS2D01G198900 chr2A 154420483 154423233 2750 True 3945.0 3945 92.754 616 3343 1 chr2A.!!$R2 2727
4 TraesCS2D01G198900 chr2A 155073313 155074674 1361 True 1208.0 1208 82.711 1263 2624 1 chr2A.!!$R3 1361
5 TraesCS2D01G198900 chr2A 9312999 9313607 608 True 865.0 865 92.447 1 603 1 chr2A.!!$R1 602
6 TraesCS2D01G198900 chr2B 207481537 207484001 2464 False 894.5 3149 95.274 620 2930 4 chr2B.!!$F1 2310
7 TraesCS2D01G198900 chr2B 228884226 228884833 607 True 880.0 880 92.951 1 603 1 chr2B.!!$R1 602
8 TraesCS2D01G198900 chr3B 64537986 64539788 1802 False 2385.0 2385 90.513 885 2707 1 chr3B.!!$F1 1822
9 TraesCS2D01G198900 chr3B 661736025 661736624 599 False 869.0 869 92.857 1 598 1 chr3B.!!$F2 597
10 TraesCS2D01G198900 chr3B 815461987 815462501 514 False 472.0 472 83.525 3046 3557 1 chr3B.!!$F3 511
11 TraesCS2D01G198900 chr1D 483972592 483974253 1661 False 1814.0 1814 86.603 1038 2683 1 chr1D.!!$F1 1645
12 TraesCS2D01G198900 chr1A 580988268 580989918 1650 False 1751.0 1751 86.016 1047 2683 1 chr1A.!!$F1 1636
13 TraesCS2D01G198900 chr1B 673992230 673993808 1578 False 1618.0 1618 85.364 1088 2659 1 chr1B.!!$F1 1571
14 TraesCS2D01G198900 chr1B 674003156 674004544 1388 True 1605.0 1605 87.554 1262 2649 1 chr1B.!!$R2 1387
15 TraesCS2D01G198900 chr1B 419391936 419392455 519 True 472.0 472 83.460 3077 3588 1 chr1B.!!$R1 511
16 TraesCS2D01G198900 chr3D 320757739 320758343 604 True 989.0 989 96.198 1 603 1 chr3D.!!$R1 602
17 TraesCS2D01G198900 chr7A 554868882 554869490 608 False 893.0 893 93.279 1 604 1 chr7A.!!$F1 603
18 TraesCS2D01G198900 chr4D 421228165 421228772 607 True 885.0 885 93.115 1 603 1 chr4D.!!$R1 602
19 TraesCS2D01G198900 chr5D 317228082 317228684 602 False 861.0 861 92.562 1 600 1 chr5D.!!$F1 599
20 TraesCS2D01G198900 chr7D 422207066 422207677 611 False 859.0 859 92.182 1 606 1 chr7D.!!$F1 605
21 TraesCS2D01G198900 chr6A 602997257 602997894 637 False 508.0 508 81.395 3044 3675 1 chr6A.!!$F1 631
22 TraesCS2D01G198900 chr6D 456371356 456371913 557 False 470.0 470 82.218 3044 3600 1 chr6D.!!$F2 556
23 TraesCS2D01G198900 chr6D 182324700 182325322 622 False 446.0 446 79.969 3044 3683 1 chr6D.!!$F1 639
24 TraesCS2D01G198900 chr7B 629026703 629027303 600 False 457.0 457 80.744 3077 3683 1 chr7B.!!$F1 606
25 TraesCS2D01G198900 chr5A 493507903 493508431 528 True 449.0 449 82.342 3044 3570 1 chr5A.!!$R1 526
26 TraesCS2D01G198900 chr3A 336890713 336891260 547 False 448.0 448 81.786 3045 3592 1 chr3A.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 460 0.104120 TGCGGGGATGTTGAGTATCG 59.896 55.0 0.00 0.00 38.61 2.92 F
458 461 0.104304 GCGGGGATGTTGAGTATCGT 59.896 55.0 0.00 0.00 38.61 3.73 F
558 561 0.179100 TATGCTCACGAGGCTCAAGC 60.179 55.0 20.54 20.54 41.14 4.01 F
617 620 0.462581 TAGCATAGCCAGTGCACAGC 60.463 55.0 21.04 20.85 44.87 4.40 F
2022 2216 0.734889 CGCTCGGCATCCATTTCTTT 59.265 50.0 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 1949 0.737367 CTTTCATGACGAGCCAGCGA 60.737 55.000 0.00 0.00 34.83 4.93 R
1809 1994 2.119611 TCGGAGGTCTTGGCCAGA 59.880 61.111 5.11 2.78 0.00 3.86 R
2058 2252 3.583276 CTGGAACACGCGTGGGCTA 62.583 63.158 39.21 26.80 36.88 3.93 R
2669 2877 4.277423 GTCTAGCTCACTAGTTCATCTCCC 59.723 50.000 0.00 0.00 45.32 4.30 R
2859 3101 0.167470 CTGAACAGCATCAACAGGCG 59.833 55.000 0.00 0.00 33.30 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 2.227089 CTAACTCGGCGCCTCCTTGT 62.227 60.000 26.68 12.50 0.00 3.16
184 185 2.579201 CTCCACGGCGACATCCTT 59.421 61.111 16.62 0.00 0.00 3.36
310 313 3.490890 GCTACCGCCTTGCTTGAG 58.509 61.111 0.00 0.00 0.00 3.02
311 314 2.754995 GCTACCGCCTTGCTTGAGC 61.755 63.158 0.00 0.00 42.50 4.26
321 324 3.159984 GCTTGAGCAACCTCGTCG 58.840 61.111 0.00 0.00 41.13 5.12
322 325 2.383527 GCTTGAGCAACCTCGTCGG 61.384 63.158 0.00 0.00 41.13 4.79
330 333 3.851955 ACCTCGTCGGTTGTCACT 58.148 55.556 0.00 0.00 46.37 3.41
331 334 1.658673 ACCTCGTCGGTTGTCACTC 59.341 57.895 0.00 0.00 46.37 3.51
332 335 1.080705 CCTCGTCGGTTGTCACTCC 60.081 63.158 0.00 0.00 0.00 3.85
333 336 1.658114 CTCGTCGGTTGTCACTCCA 59.342 57.895 0.00 0.00 0.00 3.86
334 337 0.387367 CTCGTCGGTTGTCACTCCAG 60.387 60.000 0.00 0.00 0.00 3.86
335 338 2.022129 CGTCGGTTGTCACTCCAGC 61.022 63.158 0.00 0.00 0.00 4.85
336 339 1.668151 GTCGGTTGTCACTCCAGCC 60.668 63.158 0.00 0.00 32.81 4.85
337 340 2.137528 TCGGTTGTCACTCCAGCCA 61.138 57.895 0.00 0.00 35.62 4.75
338 341 1.961277 CGGTTGTCACTCCAGCCAC 60.961 63.158 0.00 0.00 35.62 5.01
339 342 1.961277 GGTTGTCACTCCAGCCACG 60.961 63.158 0.00 0.00 35.91 4.94
340 343 1.069090 GTTGTCACTCCAGCCACGA 59.931 57.895 0.00 0.00 0.00 4.35
341 344 1.069090 TTGTCACTCCAGCCACGAC 59.931 57.895 0.00 0.00 0.00 4.34
342 345 1.399744 TTGTCACTCCAGCCACGACT 61.400 55.000 0.00 0.00 0.00 4.18
343 346 1.080434 GTCACTCCAGCCACGACTC 60.080 63.158 0.00 0.00 0.00 3.36
344 347 2.262915 CACTCCAGCCACGACTCC 59.737 66.667 0.00 0.00 0.00 3.85
345 348 3.374402 ACTCCAGCCACGACTCCG 61.374 66.667 0.00 0.00 42.50 4.63
346 349 4.803426 CTCCAGCCACGACTCCGC 62.803 72.222 0.00 0.00 39.95 5.54
349 352 4.498520 CAGCCACGACTCCGCGAT 62.499 66.667 8.23 0.00 39.95 4.58
350 353 4.498520 AGCCACGACTCCGCGATG 62.499 66.667 8.23 1.41 39.95 3.84
364 367 3.282740 GATGCGTCGACCGTTACG 58.717 61.111 10.58 0.00 41.92 3.18
365 368 1.226101 GATGCGTCGACCGTTACGA 60.226 57.895 10.58 0.00 41.55 3.43
371 374 1.575922 TCGACCGTTACGACTGTGG 59.424 57.895 6.24 0.00 34.85 4.17
372 375 1.443194 CGACCGTTACGACTGTGGG 60.443 63.158 6.24 0.00 0.00 4.61
373 376 1.080298 GACCGTTACGACTGTGGGG 60.080 63.158 6.24 0.00 0.00 4.96
374 377 2.263540 CCGTTACGACTGTGGGGG 59.736 66.667 6.24 0.00 0.00 5.40
392 395 4.681978 GTGTCCGTCGGCTTGCCT 62.682 66.667 6.34 0.00 0.00 4.75
393 396 3.936203 TGTCCGTCGGCTTGCCTT 61.936 61.111 6.34 0.00 0.00 4.35
394 397 3.119096 GTCCGTCGGCTTGCCTTC 61.119 66.667 6.34 1.98 0.00 3.46
395 398 4.735132 TCCGTCGGCTTGCCTTCG 62.735 66.667 6.34 12.79 0.00 3.79
397 400 4.735132 CGTCGGCTTGCCTTCGGA 62.735 66.667 10.12 0.00 0.00 4.55
398 401 2.125106 GTCGGCTTGCCTTCGGAT 60.125 61.111 10.12 0.00 0.00 4.18
399 402 1.745489 GTCGGCTTGCCTTCGGATT 60.745 57.895 10.12 0.00 0.00 3.01
400 403 1.449601 TCGGCTTGCCTTCGGATTC 60.450 57.895 10.12 0.00 0.00 2.52
401 404 1.450312 CGGCTTGCCTTCGGATTCT 60.450 57.895 10.12 0.00 0.00 2.40
402 405 1.026718 CGGCTTGCCTTCGGATTCTT 61.027 55.000 10.12 0.00 0.00 2.52
403 406 0.735471 GGCTTGCCTTCGGATTCTTC 59.265 55.000 4.11 0.00 0.00 2.87
404 407 1.680249 GGCTTGCCTTCGGATTCTTCT 60.680 52.381 4.11 0.00 0.00 2.85
405 408 1.668237 GCTTGCCTTCGGATTCTTCTC 59.332 52.381 0.00 0.00 0.00 2.87
406 409 2.284190 CTTGCCTTCGGATTCTTCTCC 58.716 52.381 0.00 0.00 0.00 3.71
407 410 1.275666 TGCCTTCGGATTCTTCTCCA 58.724 50.000 0.00 0.00 34.78 3.86
408 411 1.628340 TGCCTTCGGATTCTTCTCCAA 59.372 47.619 0.00 0.00 34.78 3.53
409 412 2.239654 TGCCTTCGGATTCTTCTCCAAT 59.760 45.455 0.00 0.00 34.78 3.16
410 413 2.875317 GCCTTCGGATTCTTCTCCAATC 59.125 50.000 0.00 0.00 34.78 2.67
411 414 3.432890 GCCTTCGGATTCTTCTCCAATCT 60.433 47.826 0.00 0.00 34.78 2.40
412 415 4.376146 CCTTCGGATTCTTCTCCAATCTC 58.624 47.826 0.00 0.00 34.78 2.75
413 416 4.141846 CCTTCGGATTCTTCTCCAATCTCA 60.142 45.833 0.00 0.00 34.78 3.27
414 417 4.392921 TCGGATTCTTCTCCAATCTCAC 57.607 45.455 0.00 0.00 34.78 3.51
415 418 3.133003 TCGGATTCTTCTCCAATCTCACC 59.867 47.826 0.00 0.00 34.78 4.02
416 419 3.462021 GGATTCTTCTCCAATCTCACCG 58.538 50.000 0.00 0.00 35.24 4.94
417 420 3.118592 GGATTCTTCTCCAATCTCACCGT 60.119 47.826 0.00 0.00 35.24 4.83
418 421 3.594603 TTCTTCTCCAATCTCACCGTC 57.405 47.619 0.00 0.00 0.00 4.79
419 422 2.808919 TCTTCTCCAATCTCACCGTCT 58.191 47.619 0.00 0.00 0.00 4.18
420 423 2.493675 TCTTCTCCAATCTCACCGTCTG 59.506 50.000 0.00 0.00 0.00 3.51
421 424 0.532573 TCTCCAATCTCACCGTCTGC 59.467 55.000 0.00 0.00 0.00 4.26
422 425 0.803768 CTCCAATCTCACCGTCTGCG 60.804 60.000 0.00 0.00 37.95 5.18
423 426 1.079819 CCAATCTCACCGTCTGCGT 60.080 57.895 0.00 0.00 36.15 5.24
424 427 1.078759 CCAATCTCACCGTCTGCGTC 61.079 60.000 0.00 0.00 36.15 5.19
425 428 1.154016 AATCTCACCGTCTGCGTCG 60.154 57.895 0.00 0.00 36.15 5.12
426 429 3.685214 ATCTCACCGTCTGCGTCGC 62.685 63.158 11.10 11.10 36.15 5.19
427 430 4.406173 CTCACCGTCTGCGTCGCT 62.406 66.667 19.50 0.00 36.15 4.93
428 431 3.035576 CTCACCGTCTGCGTCGCTA 62.036 63.158 19.50 3.59 36.15 4.26
429 432 2.874780 CACCGTCTGCGTCGCTAC 60.875 66.667 19.50 15.00 36.15 3.58
430 433 4.112341 ACCGTCTGCGTCGCTACC 62.112 66.667 19.50 4.72 36.15 3.18
432 435 4.456253 CGTCTGCGTCGCTACCGT 62.456 66.667 19.50 0.00 35.54 4.83
433 436 2.126580 GTCTGCGTCGCTACCGTT 60.127 61.111 19.50 0.00 35.54 4.44
434 437 2.126618 TCTGCGTCGCTACCGTTG 60.127 61.111 19.50 0.42 35.54 4.10
435 438 2.430244 CTGCGTCGCTACCGTTGT 60.430 61.111 19.50 0.00 35.54 3.32
436 439 2.716828 CTGCGTCGCTACCGTTGTG 61.717 63.158 19.50 0.00 35.54 3.33
437 440 4.130281 GCGTCGCTACCGTTGTGC 62.130 66.667 10.68 0.00 35.54 4.57
438 441 2.430244 CGTCGCTACCGTTGTGCT 60.430 61.111 0.00 0.00 35.54 4.40
439 442 2.716828 CGTCGCTACCGTTGTGCTG 61.717 63.158 0.00 0.00 35.54 4.41
440 443 2.736995 TCGCTACCGTTGTGCTGC 60.737 61.111 0.00 0.00 35.54 5.25
441 444 4.134187 CGCTACCGTTGTGCTGCG 62.134 66.667 0.00 0.00 35.19 5.18
447 450 3.803082 CGTTGTGCTGCGGGGATG 61.803 66.667 0.00 0.00 0.00 3.51
448 451 2.672996 GTTGTGCTGCGGGGATGT 60.673 61.111 0.00 0.00 0.00 3.06
449 452 2.115052 TTGTGCTGCGGGGATGTT 59.885 55.556 0.00 0.00 0.00 2.71
450 453 2.267351 TTGTGCTGCGGGGATGTTG 61.267 57.895 0.00 0.00 0.00 3.33
451 454 2.359850 GTGCTGCGGGGATGTTGA 60.360 61.111 0.00 0.00 0.00 3.18
452 455 2.046023 TGCTGCGGGGATGTTGAG 60.046 61.111 0.00 0.00 0.00 3.02
453 456 2.045926 GCTGCGGGGATGTTGAGT 60.046 61.111 0.00 0.00 0.00 3.41
454 457 1.220749 GCTGCGGGGATGTTGAGTA 59.779 57.895 0.00 0.00 0.00 2.59
455 458 0.179045 GCTGCGGGGATGTTGAGTAT 60.179 55.000 0.00 0.00 0.00 2.12
456 459 1.871080 CTGCGGGGATGTTGAGTATC 58.129 55.000 0.00 0.00 0.00 2.24
457 460 0.104120 TGCGGGGATGTTGAGTATCG 59.896 55.000 0.00 0.00 38.61 2.92
458 461 0.104304 GCGGGGATGTTGAGTATCGT 59.896 55.000 0.00 0.00 38.61 3.73
459 462 1.852942 CGGGGATGTTGAGTATCGTG 58.147 55.000 0.00 0.00 38.61 4.35
460 463 1.407618 CGGGGATGTTGAGTATCGTGA 59.592 52.381 0.00 0.00 38.61 4.35
461 464 2.035961 CGGGGATGTTGAGTATCGTGAT 59.964 50.000 0.00 0.00 38.61 3.06
462 465 3.492656 CGGGGATGTTGAGTATCGTGATT 60.493 47.826 0.00 0.00 38.61 2.57
463 466 4.261867 CGGGGATGTTGAGTATCGTGATTA 60.262 45.833 0.00 0.00 38.61 1.75
464 467 5.566826 CGGGGATGTTGAGTATCGTGATTAT 60.567 44.000 0.00 0.00 38.61 1.28
465 468 6.231211 GGGGATGTTGAGTATCGTGATTATT 58.769 40.000 0.00 0.00 38.61 1.40
466 469 7.383687 GGGGATGTTGAGTATCGTGATTATTA 58.616 38.462 0.00 0.00 38.61 0.98
467 470 7.545965 GGGGATGTTGAGTATCGTGATTATTAG 59.454 40.741 0.00 0.00 38.61 1.73
468 471 7.545965 GGGATGTTGAGTATCGTGATTATTAGG 59.454 40.741 0.00 0.00 38.61 2.69
469 472 8.304596 GGATGTTGAGTATCGTGATTATTAGGA 58.695 37.037 0.00 0.00 38.61 2.94
470 473 9.692749 GATGTTGAGTATCGTGATTATTAGGAA 57.307 33.333 0.00 0.00 38.61 3.36
472 475 9.529325 TGTTGAGTATCGTGATTATTAGGAAAG 57.471 33.333 0.00 0.00 38.61 2.62
473 476 9.745880 GTTGAGTATCGTGATTATTAGGAAAGA 57.254 33.333 0.00 0.00 38.61 2.52
474 477 9.745880 TTGAGTATCGTGATTATTAGGAAAGAC 57.254 33.333 0.00 0.00 38.61 3.01
475 478 8.074370 TGAGTATCGTGATTATTAGGAAAGACG 58.926 37.037 0.00 0.00 38.61 4.18
476 479 8.162878 AGTATCGTGATTATTAGGAAAGACGA 57.837 34.615 0.00 0.00 38.77 4.20
477 480 8.291032 AGTATCGTGATTATTAGGAAAGACGAG 58.709 37.037 0.00 0.00 37.93 4.18
478 481 6.688637 TCGTGATTATTAGGAAAGACGAGA 57.311 37.500 0.00 0.00 31.48 4.04
479 482 7.273320 TCGTGATTATTAGGAAAGACGAGAT 57.727 36.000 0.00 0.00 31.48 2.75
480 483 8.387190 TCGTGATTATTAGGAAAGACGAGATA 57.613 34.615 0.00 0.00 31.48 1.98
481 484 8.504815 TCGTGATTATTAGGAAAGACGAGATAG 58.495 37.037 0.00 0.00 31.48 2.08
482 485 8.504815 CGTGATTATTAGGAAAGACGAGATAGA 58.495 37.037 0.00 0.00 0.00 1.98
483 486 9.615295 GTGATTATTAGGAAAGACGAGATAGAC 57.385 37.037 0.00 0.00 0.00 2.59
484 487 9.575868 TGATTATTAGGAAAGACGAGATAGACT 57.424 33.333 0.00 0.00 0.00 3.24
489 492 9.802039 ATTAGGAAAGACGAGATAGACTAGAAT 57.198 33.333 0.00 0.00 0.00 2.40
490 493 9.629878 TTAGGAAAGACGAGATAGACTAGAATT 57.370 33.333 0.00 0.00 0.00 2.17
491 494 8.528044 AGGAAAGACGAGATAGACTAGAATTT 57.472 34.615 0.00 0.00 0.00 1.82
492 495 8.410141 AGGAAAGACGAGATAGACTAGAATTTG 58.590 37.037 0.00 0.00 0.00 2.32
493 496 8.192110 GGAAAGACGAGATAGACTAGAATTTGT 58.808 37.037 0.00 0.00 0.00 2.83
494 497 9.575783 GAAAGACGAGATAGACTAGAATTTGTT 57.424 33.333 0.00 0.00 0.00 2.83
495 498 9.575783 AAAGACGAGATAGACTAGAATTTGTTC 57.424 33.333 0.00 0.00 0.00 3.18
496 499 8.514330 AGACGAGATAGACTAGAATTTGTTCT 57.486 34.615 0.00 0.00 35.17 3.01
497 500 8.402472 AGACGAGATAGACTAGAATTTGTTCTG 58.598 37.037 0.00 0.00 32.72 3.02
498 501 7.484975 ACGAGATAGACTAGAATTTGTTCTGG 58.515 38.462 0.00 0.94 35.89 3.86
499 502 6.419413 CGAGATAGACTAGAATTTGTTCTGGC 59.581 42.308 0.00 0.00 33.46 4.85
500 503 7.430760 AGATAGACTAGAATTTGTTCTGGCT 57.569 36.000 0.00 2.22 33.46 4.75
501 504 7.856415 AGATAGACTAGAATTTGTTCTGGCTT 58.144 34.615 0.00 0.00 33.46 4.35
502 505 7.768120 AGATAGACTAGAATTTGTTCTGGCTTG 59.232 37.037 0.00 0.00 33.46 4.01
503 506 5.625150 AGACTAGAATTTGTTCTGGCTTGT 58.375 37.500 0.00 0.00 33.46 3.16
504 507 5.703130 AGACTAGAATTTGTTCTGGCTTGTC 59.297 40.000 0.00 0.00 33.46 3.18
505 508 5.625150 ACTAGAATTTGTTCTGGCTTGTCT 58.375 37.500 0.00 0.00 33.46 3.41
506 509 6.064717 ACTAGAATTTGTTCTGGCTTGTCTT 58.935 36.000 0.00 0.00 33.46 3.01
507 510 7.224297 ACTAGAATTTGTTCTGGCTTGTCTTA 58.776 34.615 0.00 0.00 33.46 2.10
508 511 7.885399 ACTAGAATTTGTTCTGGCTTGTCTTAT 59.115 33.333 0.00 0.00 33.46 1.73
509 512 9.383519 CTAGAATTTGTTCTGGCTTGTCTTATA 57.616 33.333 1.14 0.00 32.72 0.98
510 513 8.045176 AGAATTTGTTCTGGCTTGTCTTATAC 57.955 34.615 0.00 0.00 0.00 1.47
511 514 7.885399 AGAATTTGTTCTGGCTTGTCTTATACT 59.115 33.333 0.00 0.00 0.00 2.12
512 515 7.617041 ATTTGTTCTGGCTTGTCTTATACTC 57.383 36.000 0.00 0.00 0.00 2.59
513 516 5.086104 TGTTCTGGCTTGTCTTATACTCC 57.914 43.478 0.00 0.00 0.00 3.85
514 517 4.530553 TGTTCTGGCTTGTCTTATACTCCA 59.469 41.667 0.00 0.00 0.00 3.86
515 518 5.012664 TGTTCTGGCTTGTCTTATACTCCAA 59.987 40.000 0.00 0.00 0.00 3.53
516 519 5.755409 TCTGGCTTGTCTTATACTCCAAA 57.245 39.130 0.00 0.00 0.00 3.28
517 520 6.313519 TCTGGCTTGTCTTATACTCCAAAT 57.686 37.500 0.00 0.00 0.00 2.32
518 521 7.432148 TCTGGCTTGTCTTATACTCCAAATA 57.568 36.000 0.00 0.00 0.00 1.40
519 522 7.500992 TCTGGCTTGTCTTATACTCCAAATAG 58.499 38.462 0.00 0.00 0.00 1.73
520 523 7.344612 TCTGGCTTGTCTTATACTCCAAATAGA 59.655 37.037 0.00 0.00 0.00 1.98
521 524 8.034313 TGGCTTGTCTTATACTCCAAATAGAT 57.966 34.615 0.00 0.00 0.00 1.98
522 525 8.150945 TGGCTTGTCTTATACTCCAAATAGATC 58.849 37.037 0.00 0.00 0.00 2.75
523 526 8.150945 GGCTTGTCTTATACTCCAAATAGATCA 58.849 37.037 0.00 0.00 0.00 2.92
524 527 9.717942 GCTTGTCTTATACTCCAAATAGATCAT 57.282 33.333 0.00 0.00 0.00 2.45
533 536 7.682787 ACTCCAAATAGATCATTGTACTCCT 57.317 36.000 0.00 0.00 0.00 3.69
534 537 8.783660 ACTCCAAATAGATCATTGTACTCCTA 57.216 34.615 0.00 0.00 0.00 2.94
535 538 9.386122 ACTCCAAATAGATCATTGTACTCCTAT 57.614 33.333 0.00 0.00 0.00 2.57
548 551 9.670719 CATTGTACTCCTATATATATGCTCACG 57.329 37.037 5.44 0.00 0.00 4.35
549 552 9.628500 ATTGTACTCCTATATATATGCTCACGA 57.372 33.333 5.44 0.00 0.00 4.35
550 553 8.664211 TGTACTCCTATATATATGCTCACGAG 57.336 38.462 5.44 4.01 0.00 4.18
551 554 7.715686 TGTACTCCTATATATATGCTCACGAGG 59.284 40.741 5.44 2.71 0.00 4.63
552 555 5.533154 ACTCCTATATATATGCTCACGAGGC 59.467 44.000 5.44 0.00 0.00 4.70
553 556 5.696030 TCCTATATATATGCTCACGAGGCT 58.304 41.667 5.44 0.00 0.00 4.58
554 557 5.765677 TCCTATATATATGCTCACGAGGCTC 59.234 44.000 3.87 3.87 0.00 4.70
555 558 5.532779 CCTATATATATGCTCACGAGGCTCA 59.467 44.000 15.95 0.00 0.00 4.26
556 559 5.921962 ATATATATGCTCACGAGGCTCAA 57.078 39.130 15.95 0.00 0.00 3.02
557 560 2.522836 ATATGCTCACGAGGCTCAAG 57.477 50.000 15.95 9.52 0.00 3.02
558 561 0.179100 TATGCTCACGAGGCTCAAGC 60.179 55.000 20.54 20.54 41.14 4.01
559 562 2.047844 GCTCACGAGGCTCAAGCA 60.048 61.111 21.74 1.49 44.36 3.91
560 563 1.669115 GCTCACGAGGCTCAAGCAA 60.669 57.895 21.74 1.46 44.36 3.91
561 564 1.023513 GCTCACGAGGCTCAAGCAAT 61.024 55.000 21.74 0.00 44.36 3.56
562 565 1.740380 GCTCACGAGGCTCAAGCAATA 60.740 52.381 21.74 0.00 44.36 1.90
563 566 1.929836 CTCACGAGGCTCAAGCAATAC 59.070 52.381 15.95 0.00 44.36 1.89
564 567 1.275010 TCACGAGGCTCAAGCAATACA 59.725 47.619 15.95 0.00 44.36 2.29
565 568 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
566 569 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
567 570 1.061131 CGAGGCTCAAGCAATACAACG 59.939 52.381 15.95 0.00 44.36 4.10
568 571 2.346803 GAGGCTCAAGCAATACAACGA 58.653 47.619 10.25 0.00 44.36 3.85
569 572 2.742053 GAGGCTCAAGCAATACAACGAA 59.258 45.455 10.25 0.00 44.36 3.85
570 573 2.484264 AGGCTCAAGCAATACAACGAAC 59.516 45.455 4.13 0.00 44.36 3.95
571 574 2.495939 GCTCAAGCAATACAACGAACG 58.504 47.619 0.00 0.00 41.59 3.95
572 575 2.156891 GCTCAAGCAATACAACGAACGA 59.843 45.455 0.14 0.00 41.59 3.85
573 576 3.181520 GCTCAAGCAATACAACGAACGAT 60.182 43.478 0.14 0.00 41.59 3.73
574 577 4.669197 GCTCAAGCAATACAACGAACGATT 60.669 41.667 0.14 0.00 41.59 3.34
575 578 5.351233 TCAAGCAATACAACGAACGATTT 57.649 34.783 0.14 0.00 0.00 2.17
576 579 5.379003 TCAAGCAATACAACGAACGATTTC 58.621 37.500 0.14 0.00 0.00 2.17
577 580 5.050023 TCAAGCAATACAACGAACGATTTCA 60.050 36.000 0.14 0.00 0.00 2.69
578 581 4.708601 AGCAATACAACGAACGATTTCAC 58.291 39.130 0.14 0.00 0.00 3.18
579 582 3.844099 GCAATACAACGAACGATTTCACC 59.156 43.478 0.14 0.00 0.00 4.02
580 583 4.611807 GCAATACAACGAACGATTTCACCA 60.612 41.667 0.14 0.00 0.00 4.17
581 584 5.627172 CAATACAACGAACGATTTCACCAT 58.373 37.500 0.14 0.00 0.00 3.55
582 585 6.673556 GCAATACAACGAACGATTTCACCATA 60.674 38.462 0.14 0.00 0.00 2.74
583 586 7.406553 CAATACAACGAACGATTTCACCATAT 58.593 34.615 0.14 0.00 0.00 1.78
584 587 5.464965 ACAACGAACGATTTCACCATATC 57.535 39.130 0.14 0.00 0.00 1.63
585 588 4.331717 ACAACGAACGATTTCACCATATCC 59.668 41.667 0.14 0.00 0.00 2.59
586 589 3.463944 ACGAACGATTTCACCATATCCC 58.536 45.455 0.14 0.00 0.00 3.85
587 590 3.134081 ACGAACGATTTCACCATATCCCT 59.866 43.478 0.14 0.00 0.00 4.20
588 591 3.741344 CGAACGATTTCACCATATCCCTC 59.259 47.826 0.00 0.00 0.00 4.30
589 592 4.501571 CGAACGATTTCACCATATCCCTCT 60.502 45.833 0.00 0.00 0.00 3.69
590 593 5.278808 CGAACGATTTCACCATATCCCTCTA 60.279 44.000 0.00 0.00 0.00 2.43
591 594 6.572509 CGAACGATTTCACCATATCCCTCTAT 60.573 42.308 0.00 0.00 0.00 1.98
592 595 6.287589 ACGATTTCACCATATCCCTCTATC 57.712 41.667 0.00 0.00 0.00 2.08
593 596 5.187967 ACGATTTCACCATATCCCTCTATCC 59.812 44.000 0.00 0.00 0.00 2.59
594 597 5.395768 CGATTTCACCATATCCCTCTATCCC 60.396 48.000 0.00 0.00 0.00 3.85
595 598 4.785173 TTCACCATATCCCTCTATCCCT 57.215 45.455 0.00 0.00 0.00 4.20
596 599 4.785173 TCACCATATCCCTCTATCCCTT 57.215 45.455 0.00 0.00 0.00 3.95
597 600 4.689062 TCACCATATCCCTCTATCCCTTC 58.311 47.826 0.00 0.00 0.00 3.46
598 601 4.361367 TCACCATATCCCTCTATCCCTTCT 59.639 45.833 0.00 0.00 0.00 2.85
599 602 5.559947 TCACCATATCCCTCTATCCCTTCTA 59.440 44.000 0.00 0.00 0.00 2.10
600 603 5.896678 CACCATATCCCTCTATCCCTTCTAG 59.103 48.000 0.00 0.00 0.00 2.43
601 604 4.898861 CCATATCCCTCTATCCCTTCTAGC 59.101 50.000 0.00 0.00 0.00 3.42
602 605 5.523588 CATATCCCTCTATCCCTTCTAGCA 58.476 45.833 0.00 0.00 0.00 3.49
603 606 4.708420 ATCCCTCTATCCCTTCTAGCAT 57.292 45.455 0.00 0.00 0.00 3.79
604 607 5.822774 ATCCCTCTATCCCTTCTAGCATA 57.177 43.478 0.00 0.00 0.00 3.14
605 608 5.199982 TCCCTCTATCCCTTCTAGCATAG 57.800 47.826 0.00 0.00 41.04 2.23
606 609 3.704061 CCCTCTATCCCTTCTAGCATAGC 59.296 52.174 0.00 0.00 38.99 2.97
607 610 3.704061 CCTCTATCCCTTCTAGCATAGCC 59.296 52.174 0.00 0.00 38.99 3.93
608 611 4.348486 CTCTATCCCTTCTAGCATAGCCA 58.652 47.826 0.00 0.00 38.99 4.75
609 612 4.348486 TCTATCCCTTCTAGCATAGCCAG 58.652 47.826 0.00 0.00 38.99 4.85
610 613 2.478872 TCCCTTCTAGCATAGCCAGT 57.521 50.000 0.00 0.00 38.99 4.00
611 614 2.042464 TCCCTTCTAGCATAGCCAGTG 58.958 52.381 0.00 0.00 38.99 3.66
612 615 1.542108 CCCTTCTAGCATAGCCAGTGC 60.542 57.143 0.00 0.00 38.99 4.40
613 616 1.139654 CCTTCTAGCATAGCCAGTGCA 59.860 52.381 8.09 0.00 44.87 4.57
614 617 2.208431 CTTCTAGCATAGCCAGTGCAC 58.792 52.381 9.40 9.40 44.87 4.57
615 618 1.194218 TCTAGCATAGCCAGTGCACA 58.806 50.000 21.04 0.00 44.87 4.57
616 619 1.137675 TCTAGCATAGCCAGTGCACAG 59.862 52.381 21.04 11.53 44.87 3.66
617 620 0.462581 TAGCATAGCCAGTGCACAGC 60.463 55.000 21.04 20.85 44.87 4.40
618 621 2.768492 GCATAGCCAGTGCACAGCC 61.768 63.158 23.53 5.16 42.08 4.85
672 675 3.907474 TCAGTGACCAAGGTCCTGAATAA 59.093 43.478 25.13 12.05 43.01 1.40
697 700 4.766891 ACCCACTTGATCAATTGACGATTT 59.233 37.500 23.26 0.00 0.00 2.17
718 826 0.947180 TTGCGCCACGTTCTTCCTAC 60.947 55.000 4.18 0.00 0.00 3.18
730 838 7.067251 CCACGTTCTTCCTACTAGTCTAAGATT 59.933 40.741 0.00 0.00 0.00 2.40
758 866 2.863704 GCAGTTGGAAATCACTGGCAAC 60.864 50.000 1.72 0.00 0.00 4.17
974 1115 2.483714 GGCTGTCAGTCTGTCTGTTCAA 60.484 50.000 0.93 0.00 43.97 2.69
1021 1162 5.412594 CAGATGAAAATGTCTCCGGAAAGAA 59.587 40.000 5.23 0.00 0.00 2.52
1764 1949 3.474570 GGCATGCCGGAGTCTCCT 61.475 66.667 23.48 0.00 33.30 3.69
2022 2216 0.734889 CGCTCGGCATCCATTTCTTT 59.265 50.000 0.00 0.00 0.00 2.52
2669 2877 2.412089 CGAAAGACAAGGCGAAAGTAGG 59.588 50.000 0.00 0.00 0.00 3.18
2688 2896 2.023501 AGGGGAGATGAACTAGTGAGCT 60.024 50.000 0.00 0.00 0.00 4.09
2707 2915 3.319972 AGCTAGACGTCAACCAACTGTTA 59.680 43.478 19.50 0.00 34.69 2.41
2714 2922 3.135994 GTCAACCAACTGTTACCGATGT 58.864 45.455 0.00 0.00 34.69 3.06
2715 2923 4.309099 GTCAACCAACTGTTACCGATGTA 58.691 43.478 0.00 0.00 34.69 2.29
2716 2924 4.151157 GTCAACCAACTGTTACCGATGTAC 59.849 45.833 0.00 0.00 34.69 2.90
2746 2955 3.722147 AGATGTATCTGATCAACGTGGC 58.278 45.455 0.00 0.00 35.42 5.01
2753 2962 7.213678 TGTATCTGATCAACGTGGCAATATAA 58.786 34.615 0.00 0.00 0.00 0.98
2767 2977 4.441634 GGCAATATAAGTGTCACGGACTCT 60.442 45.833 0.00 4.69 37.90 3.24
2859 3101 5.597813 AAACGTTGACATGACATCTCTTC 57.402 39.130 0.00 0.00 0.00 2.87
2863 3105 1.827344 TGACATGACATCTCTTCGCCT 59.173 47.619 0.00 0.00 0.00 5.52
2874 3116 0.035317 TCTTCGCCTGTTGATGCTGT 59.965 50.000 0.00 0.00 0.00 4.40
2889 3131 2.009051 TGCTGTTCAGCGTATCATTGG 58.991 47.619 17.95 0.00 37.69 3.16
2942 3214 6.003950 GGATAGCTTTATCTGGTGGCATTTA 58.996 40.000 0.00 0.00 0.00 1.40
2965 3237 3.541516 GCATCTGTTCGGTTAAATCGTCG 60.542 47.826 0.00 0.00 0.00 5.12
3040 3319 8.668510 ACCTACTAATAAAGCACTCATCATTG 57.331 34.615 0.00 0.00 0.00 2.82
3104 3402 3.007614 ACCCGCAGTACATGTTTAAGTCT 59.992 43.478 2.30 0.00 0.00 3.24
3286 3597 8.179615 CCATATCTTTTAAACCGTAACTCCAAC 58.820 37.037 0.00 0.00 0.00 3.77
3297 3608 6.523840 ACCGTAACTCCAACTTTAACATGTA 58.476 36.000 0.00 0.00 0.00 2.29
3482 3798 9.331282 CTATTAAAACCATACTGAGAGGAAAGG 57.669 37.037 0.00 0.00 0.00 3.11
3498 3814 7.802117 AGAGGAAAGGAAATATCGATAACCAA 58.198 34.615 20.62 0.00 0.00 3.67
3504 3820 6.299141 AGGAAATATCGATAACCAAGCATGT 58.701 36.000 20.62 0.00 0.00 3.21
3515 3831 2.027745 ACCAAGCATGTACACCTCTGAG 60.028 50.000 0.00 0.00 0.00 3.35
3526 3842 0.894184 ACCTCTGAGAAACCTCGCGA 60.894 55.000 9.26 9.26 33.42 5.87
3544 3861 4.095610 CGCGAGGGAAAAACAACATATTC 58.904 43.478 0.00 0.00 0.00 1.75
3567 3884 3.031013 TCATCTTATTCCAGGCGAGTGA 58.969 45.455 0.00 0.00 0.00 3.41
3614 3951 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3615 3952 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3616 3953 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3617 3954 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3618 3955 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
3632 3969 3.565307 AGAGAGATGCCTTAGGACTGAG 58.435 50.000 0.69 0.00 0.00 3.35
3645 3982 1.873591 GGACTGAGCACATTCAAACGT 59.126 47.619 4.05 0.00 0.00 3.99
3654 3991 4.503734 AGCACATTCAAACGTGTTTTCATG 59.496 37.500 10.18 10.18 42.09 3.07
3655 3992 4.750121 CACATTCAAACGTGTTTTCATGC 58.250 39.130 11.13 0.00 40.20 4.06
3675 4013 3.198489 GAGCACTAAGGCCAGCGC 61.198 66.667 5.01 0.00 0.00 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
315 318 0.387367 CTGGAGTGACAACCGACGAG 60.387 60.000 0.00 0.00 0.00 4.18
316 319 1.658114 CTGGAGTGACAACCGACGA 59.342 57.895 0.00 0.00 0.00 4.20
317 320 2.022129 GCTGGAGTGACAACCGACG 61.022 63.158 0.00 0.00 0.00 5.12
318 321 1.668151 GGCTGGAGTGACAACCGAC 60.668 63.158 0.00 0.00 0.00 4.79
319 322 2.137528 TGGCTGGAGTGACAACCGA 61.138 57.895 0.00 0.00 29.11 4.69
320 323 1.961277 GTGGCTGGAGTGACAACCG 60.961 63.158 0.00 0.00 29.11 4.44
321 324 1.961277 CGTGGCTGGAGTGACAACC 60.961 63.158 0.00 0.00 0.00 3.77
322 325 1.069090 TCGTGGCTGGAGTGACAAC 59.931 57.895 0.00 0.00 0.00 3.32
323 326 1.069090 GTCGTGGCTGGAGTGACAA 59.931 57.895 0.00 0.00 0.00 3.18
324 327 1.806461 GAGTCGTGGCTGGAGTGACA 61.806 60.000 0.00 0.00 32.08 3.58
325 328 1.080434 GAGTCGTGGCTGGAGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
326 329 2.276116 GGAGTCGTGGCTGGAGTGA 61.276 63.158 0.00 0.00 0.00 3.41
327 330 2.262915 GGAGTCGTGGCTGGAGTG 59.737 66.667 0.00 0.00 0.00 3.51
328 331 3.374402 CGGAGTCGTGGCTGGAGT 61.374 66.667 0.00 0.00 0.00 3.85
329 332 4.803426 GCGGAGTCGTGGCTGGAG 62.803 72.222 0.00 0.00 38.89 3.86
332 335 4.498520 ATCGCGGAGTCGTGGCTG 62.499 66.667 6.13 0.00 45.85 4.85
333 336 4.498520 CATCGCGGAGTCGTGGCT 62.499 66.667 6.13 0.00 45.85 4.75
353 356 1.575922 CCACAGTCGTAACGGTCGA 59.424 57.895 0.00 0.00 30.93 4.20
354 357 1.443194 CCCACAGTCGTAACGGTCG 60.443 63.158 0.00 0.00 30.93 4.79
355 358 1.080298 CCCCACAGTCGTAACGGTC 60.080 63.158 0.00 0.00 30.93 4.79
356 359 2.576832 CCCCCACAGTCGTAACGGT 61.577 63.158 0.00 0.00 33.83 4.83
357 360 2.263540 CCCCCACAGTCGTAACGG 59.736 66.667 0.00 0.00 0.00 4.44
375 378 4.681978 AGGCAAGCCGACGGACAC 62.682 66.667 20.50 0.00 41.95 3.67
376 379 3.876589 GAAGGCAAGCCGACGGACA 62.877 63.158 20.50 0.00 41.95 4.02
377 380 3.119096 GAAGGCAAGCCGACGGAC 61.119 66.667 20.50 9.27 41.95 4.79
378 381 4.735132 CGAAGGCAAGCCGACGGA 62.735 66.667 20.50 0.00 41.95 4.69
391 394 4.808364 GTGAGATTGGAGAAGAATCCGAAG 59.192 45.833 0.00 0.00 42.77 3.79
392 395 4.383118 GGTGAGATTGGAGAAGAATCCGAA 60.383 45.833 0.00 0.00 42.77 4.30
393 396 3.133003 GGTGAGATTGGAGAAGAATCCGA 59.867 47.826 0.00 0.00 42.77 4.55
394 397 3.462021 GGTGAGATTGGAGAAGAATCCG 58.538 50.000 0.00 0.00 42.77 4.18
395 398 3.118592 ACGGTGAGATTGGAGAAGAATCC 60.119 47.826 0.00 0.00 40.03 3.01
396 399 4.116238 GACGGTGAGATTGGAGAAGAATC 58.884 47.826 0.00 0.00 0.00 2.52
397 400 3.772025 AGACGGTGAGATTGGAGAAGAAT 59.228 43.478 0.00 0.00 0.00 2.40
398 401 3.056536 CAGACGGTGAGATTGGAGAAGAA 60.057 47.826 0.00 0.00 0.00 2.52
399 402 2.493675 CAGACGGTGAGATTGGAGAAGA 59.506 50.000 0.00 0.00 0.00 2.87
400 403 2.886081 CAGACGGTGAGATTGGAGAAG 58.114 52.381 0.00 0.00 0.00 2.85
401 404 1.066858 GCAGACGGTGAGATTGGAGAA 60.067 52.381 0.00 0.00 0.00 2.87
402 405 0.532573 GCAGACGGTGAGATTGGAGA 59.467 55.000 0.00 0.00 0.00 3.71
403 406 0.803768 CGCAGACGGTGAGATTGGAG 60.804 60.000 0.00 0.00 34.97 3.86
404 407 1.215382 CGCAGACGGTGAGATTGGA 59.785 57.895 0.00 0.00 34.97 3.53
405 408 1.078759 GACGCAGACGGTGAGATTGG 61.079 60.000 0.00 0.00 46.04 3.16
406 409 1.406219 CGACGCAGACGGTGAGATTG 61.406 60.000 0.00 0.00 46.04 2.67
407 410 1.154016 CGACGCAGACGGTGAGATT 60.154 57.895 0.00 0.00 46.04 2.40
408 411 2.485582 CGACGCAGACGGTGAGAT 59.514 61.111 0.00 0.00 46.04 2.75
409 412 4.400109 GCGACGCAGACGGTGAGA 62.400 66.667 16.42 0.00 46.96 3.27
416 419 2.126580 AACGGTAGCGACGCAGAC 60.127 61.111 23.70 18.49 34.00 3.51
417 420 2.126618 CAACGGTAGCGACGCAGA 60.127 61.111 23.70 6.47 34.00 4.26
418 421 2.430244 ACAACGGTAGCGACGCAG 60.430 61.111 23.70 12.40 34.00 5.18
419 422 2.731721 CACAACGGTAGCGACGCA 60.732 61.111 23.70 5.17 34.00 5.24
420 423 4.130281 GCACAACGGTAGCGACGC 62.130 66.667 22.88 13.03 34.00 5.19
421 424 2.430244 AGCACAACGGTAGCGACG 60.430 61.111 22.88 13.36 37.36 5.12
422 425 3.011760 GCAGCACAACGGTAGCGAC 62.012 63.158 22.88 4.75 0.00 5.19
423 426 2.736995 GCAGCACAACGGTAGCGA 60.737 61.111 22.88 0.00 0.00 4.93
424 427 4.134187 CGCAGCACAACGGTAGCG 62.134 66.667 13.69 13.69 36.71 4.26
425 428 3.788766 CCGCAGCACAACGGTAGC 61.789 66.667 0.00 0.00 44.46 3.58
430 433 3.803082 CATCCCCGCAGCACAACG 61.803 66.667 0.00 0.00 0.00 4.10
431 434 2.268076 AACATCCCCGCAGCACAAC 61.268 57.895 0.00 0.00 0.00 3.32
432 435 2.115052 AACATCCCCGCAGCACAA 59.885 55.556 0.00 0.00 0.00 3.33
433 436 2.672651 CAACATCCCCGCAGCACA 60.673 61.111 0.00 0.00 0.00 4.57
434 437 2.359850 TCAACATCCCCGCAGCAC 60.360 61.111 0.00 0.00 0.00 4.40
435 438 1.549243 TACTCAACATCCCCGCAGCA 61.549 55.000 0.00 0.00 0.00 4.41
436 439 0.179045 ATACTCAACATCCCCGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
437 440 1.869754 CGATACTCAACATCCCCGCAG 60.870 57.143 0.00 0.00 0.00 5.18
438 441 0.104120 CGATACTCAACATCCCCGCA 59.896 55.000 0.00 0.00 0.00 5.69
439 442 0.104304 ACGATACTCAACATCCCCGC 59.896 55.000 0.00 0.00 0.00 6.13
440 443 1.407618 TCACGATACTCAACATCCCCG 59.592 52.381 0.00 0.00 0.00 5.73
441 444 3.753294 ATCACGATACTCAACATCCCC 57.247 47.619 0.00 0.00 0.00 4.81
442 445 7.545965 CCTAATAATCACGATACTCAACATCCC 59.454 40.741 0.00 0.00 0.00 3.85
443 446 8.304596 TCCTAATAATCACGATACTCAACATCC 58.695 37.037 0.00 0.00 0.00 3.51
444 447 9.692749 TTCCTAATAATCACGATACTCAACATC 57.307 33.333 0.00 0.00 0.00 3.06
446 449 9.529325 CTTTCCTAATAATCACGATACTCAACA 57.471 33.333 0.00 0.00 0.00 3.33
447 450 9.745880 TCTTTCCTAATAATCACGATACTCAAC 57.254 33.333 0.00 0.00 0.00 3.18
448 451 9.745880 GTCTTTCCTAATAATCACGATACTCAA 57.254 33.333 0.00 0.00 0.00 3.02
449 452 8.074370 CGTCTTTCCTAATAATCACGATACTCA 58.926 37.037 0.00 0.00 0.00 3.41
450 453 8.288208 TCGTCTTTCCTAATAATCACGATACTC 58.712 37.037 0.00 0.00 30.50 2.59
451 454 8.162878 TCGTCTTTCCTAATAATCACGATACT 57.837 34.615 0.00 0.00 30.50 2.12
452 455 8.288208 TCTCGTCTTTCCTAATAATCACGATAC 58.712 37.037 0.00 0.00 34.76 2.24
453 456 8.387190 TCTCGTCTTTCCTAATAATCACGATA 57.613 34.615 0.00 0.00 34.76 2.92
454 457 7.273320 TCTCGTCTTTCCTAATAATCACGAT 57.727 36.000 0.00 0.00 34.76 3.73
455 458 6.688637 TCTCGTCTTTCCTAATAATCACGA 57.311 37.500 0.00 0.00 34.16 4.35
456 459 8.504815 TCTATCTCGTCTTTCCTAATAATCACG 58.495 37.037 0.00 0.00 0.00 4.35
457 460 9.615295 GTCTATCTCGTCTTTCCTAATAATCAC 57.385 37.037 0.00 0.00 0.00 3.06
458 461 9.575868 AGTCTATCTCGTCTTTCCTAATAATCA 57.424 33.333 0.00 0.00 0.00 2.57
463 466 9.802039 ATTCTAGTCTATCTCGTCTTTCCTAAT 57.198 33.333 0.00 0.00 0.00 1.73
464 467 9.629878 AATTCTAGTCTATCTCGTCTTTCCTAA 57.370 33.333 0.00 0.00 0.00 2.69
465 468 9.629878 AAATTCTAGTCTATCTCGTCTTTCCTA 57.370 33.333 0.00 0.00 0.00 2.94
466 469 8.410141 CAAATTCTAGTCTATCTCGTCTTTCCT 58.590 37.037 0.00 0.00 0.00 3.36
467 470 8.192110 ACAAATTCTAGTCTATCTCGTCTTTCC 58.808 37.037 0.00 0.00 0.00 3.13
468 471 9.575783 AACAAATTCTAGTCTATCTCGTCTTTC 57.424 33.333 0.00 0.00 0.00 2.62
469 472 9.575783 GAACAAATTCTAGTCTATCTCGTCTTT 57.424 33.333 0.00 0.00 31.55 2.52
470 473 8.962679 AGAACAAATTCTAGTCTATCTCGTCTT 58.037 33.333 0.00 0.00 43.70 3.01
471 474 8.402472 CAGAACAAATTCTAGTCTATCTCGTCT 58.598 37.037 0.00 0.00 43.69 4.18
472 475 7.646130 CCAGAACAAATTCTAGTCTATCTCGTC 59.354 40.741 0.00 0.00 43.69 4.20
473 476 7.484975 CCAGAACAAATTCTAGTCTATCTCGT 58.515 38.462 0.00 0.00 43.69 4.18
474 477 6.419413 GCCAGAACAAATTCTAGTCTATCTCG 59.581 42.308 0.00 0.00 43.69 4.04
475 478 7.496747 AGCCAGAACAAATTCTAGTCTATCTC 58.503 38.462 0.00 0.00 43.69 2.75
476 479 7.430760 AGCCAGAACAAATTCTAGTCTATCT 57.569 36.000 0.00 0.00 43.69 1.98
477 480 7.550906 ACAAGCCAGAACAAATTCTAGTCTATC 59.449 37.037 0.00 0.00 43.69 2.08
478 481 7.398024 ACAAGCCAGAACAAATTCTAGTCTAT 58.602 34.615 0.00 0.00 43.69 1.98
479 482 6.769512 ACAAGCCAGAACAAATTCTAGTCTA 58.230 36.000 0.00 0.00 43.69 2.59
480 483 5.625150 ACAAGCCAGAACAAATTCTAGTCT 58.375 37.500 0.00 0.00 43.69 3.24
481 484 5.703130 AGACAAGCCAGAACAAATTCTAGTC 59.297 40.000 0.00 0.00 43.69 2.59
482 485 5.625150 AGACAAGCCAGAACAAATTCTAGT 58.375 37.500 0.00 0.00 43.69 2.57
483 486 6.566197 AAGACAAGCCAGAACAAATTCTAG 57.434 37.500 0.00 0.00 43.69 2.43
484 487 9.162764 GTATAAGACAAGCCAGAACAAATTCTA 57.837 33.333 0.00 0.00 43.69 2.10
485 488 7.885399 AGTATAAGACAAGCCAGAACAAATTCT 59.115 33.333 0.00 0.00 46.63 2.40
486 489 8.045176 AGTATAAGACAAGCCAGAACAAATTC 57.955 34.615 0.00 0.00 34.78 2.17
487 490 7.121315 GGAGTATAAGACAAGCCAGAACAAATT 59.879 37.037 0.00 0.00 0.00 1.82
488 491 6.599638 GGAGTATAAGACAAGCCAGAACAAAT 59.400 38.462 0.00 0.00 0.00 2.32
489 492 5.938125 GGAGTATAAGACAAGCCAGAACAAA 59.062 40.000 0.00 0.00 0.00 2.83
490 493 5.012664 TGGAGTATAAGACAAGCCAGAACAA 59.987 40.000 0.00 0.00 0.00 2.83
491 494 4.530553 TGGAGTATAAGACAAGCCAGAACA 59.469 41.667 0.00 0.00 0.00 3.18
492 495 5.086104 TGGAGTATAAGACAAGCCAGAAC 57.914 43.478 0.00 0.00 0.00 3.01
493 496 5.755409 TTGGAGTATAAGACAAGCCAGAA 57.245 39.130 0.00 0.00 30.67 3.02
494 497 5.755409 TTTGGAGTATAAGACAAGCCAGA 57.245 39.130 0.00 0.00 30.67 3.86
495 498 7.500992 TCTATTTGGAGTATAAGACAAGCCAG 58.499 38.462 0.00 0.00 30.67 4.85
496 499 7.432148 TCTATTTGGAGTATAAGACAAGCCA 57.568 36.000 0.00 0.00 0.00 4.75
497 500 8.150945 TGATCTATTTGGAGTATAAGACAAGCC 58.849 37.037 0.00 0.00 0.00 4.35
498 501 9.717942 ATGATCTATTTGGAGTATAAGACAAGC 57.282 33.333 0.00 0.00 0.00 4.01
507 510 9.386122 AGGAGTACAATGATCTATTTGGAGTAT 57.614 33.333 0.00 0.00 0.00 2.12
508 511 8.783660 AGGAGTACAATGATCTATTTGGAGTA 57.216 34.615 0.00 0.00 0.00 2.59
509 512 7.682787 AGGAGTACAATGATCTATTTGGAGT 57.317 36.000 0.00 0.00 0.00 3.85
522 525 9.670719 CGTGAGCATATATATAGGAGTACAATG 57.329 37.037 8.56 0.00 0.00 2.82
523 526 9.628500 TCGTGAGCATATATATAGGAGTACAAT 57.372 33.333 8.56 0.00 0.00 2.71
524 527 9.110502 CTCGTGAGCATATATATAGGAGTACAA 57.889 37.037 8.56 0.00 0.00 2.41
525 528 7.715686 CCTCGTGAGCATATATATAGGAGTACA 59.284 40.741 8.56 0.27 0.00 2.90
526 529 7.308109 GCCTCGTGAGCATATATATAGGAGTAC 60.308 44.444 8.56 2.84 0.00 2.73
527 530 6.711194 GCCTCGTGAGCATATATATAGGAGTA 59.289 42.308 8.56 0.00 0.00 2.59
528 531 5.533154 GCCTCGTGAGCATATATATAGGAGT 59.467 44.000 8.56 0.00 0.00 3.85
529 532 5.767665 AGCCTCGTGAGCATATATATAGGAG 59.232 44.000 8.56 7.46 0.00 3.69
530 533 5.696030 AGCCTCGTGAGCATATATATAGGA 58.304 41.667 8.56 0.00 0.00 2.94
531 534 5.532779 TGAGCCTCGTGAGCATATATATAGG 59.467 44.000 0.00 0.00 0.00 2.57
532 535 6.625873 TGAGCCTCGTGAGCATATATATAG 57.374 41.667 0.00 0.00 0.00 1.31
533 536 6.460261 GCTTGAGCCTCGTGAGCATATATATA 60.460 42.308 8.97 0.00 33.68 0.86
534 537 5.680922 GCTTGAGCCTCGTGAGCATATATAT 60.681 44.000 8.97 0.00 33.68 0.86
535 538 4.380973 GCTTGAGCCTCGTGAGCATATATA 60.381 45.833 8.97 0.00 33.68 0.86
536 539 3.616076 GCTTGAGCCTCGTGAGCATATAT 60.616 47.826 8.97 0.00 33.68 0.86
537 540 2.288457 GCTTGAGCCTCGTGAGCATATA 60.288 50.000 8.97 0.00 33.68 0.86
538 541 1.539929 GCTTGAGCCTCGTGAGCATAT 60.540 52.381 8.97 0.00 33.68 1.78
539 542 0.179100 GCTTGAGCCTCGTGAGCATA 60.179 55.000 8.97 0.00 33.68 3.14
540 543 1.449246 GCTTGAGCCTCGTGAGCAT 60.449 57.895 8.97 0.00 33.68 3.79
541 544 2.047844 GCTTGAGCCTCGTGAGCA 60.048 61.111 8.97 0.00 33.68 4.26
542 545 1.023513 ATTGCTTGAGCCTCGTGAGC 61.024 55.000 7.39 7.39 41.18 4.26
543 546 1.929836 GTATTGCTTGAGCCTCGTGAG 59.070 52.381 0.00 0.00 41.18 3.51
544 547 1.275010 TGTATTGCTTGAGCCTCGTGA 59.725 47.619 0.00 0.00 41.18 4.35
545 548 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
546 549 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
547 550 1.061131 CGTTGTATTGCTTGAGCCTCG 59.939 52.381 0.00 0.00 41.18 4.63
548 551 2.346803 TCGTTGTATTGCTTGAGCCTC 58.653 47.619 0.00 0.00 41.18 4.70
549 552 2.472695 TCGTTGTATTGCTTGAGCCT 57.527 45.000 0.00 0.00 41.18 4.58
550 553 2.724839 CGTTCGTTGTATTGCTTGAGCC 60.725 50.000 0.00 0.00 41.18 4.70
551 554 2.156891 TCGTTCGTTGTATTGCTTGAGC 59.843 45.455 0.00 0.00 42.50 4.26
552 555 4.584029 ATCGTTCGTTGTATTGCTTGAG 57.416 40.909 0.00 0.00 0.00 3.02
553 556 5.050023 TGAAATCGTTCGTTGTATTGCTTGA 60.050 36.000 0.00 0.00 36.46 3.02
554 557 5.058008 GTGAAATCGTTCGTTGTATTGCTTG 59.942 40.000 0.00 0.00 36.46 4.01
555 558 5.144359 GTGAAATCGTTCGTTGTATTGCTT 58.856 37.500 0.00 0.00 36.46 3.91
556 559 4.378046 GGTGAAATCGTTCGTTGTATTGCT 60.378 41.667 0.00 0.00 36.46 3.91
557 560 3.844099 GGTGAAATCGTTCGTTGTATTGC 59.156 43.478 0.00 0.00 36.46 3.56
558 561 5.024768 TGGTGAAATCGTTCGTTGTATTG 57.975 39.130 0.00 0.00 36.46 1.90
559 562 5.873179 ATGGTGAAATCGTTCGTTGTATT 57.127 34.783 0.00 0.00 36.46 1.89
560 563 6.202188 GGATATGGTGAAATCGTTCGTTGTAT 59.798 38.462 0.00 0.00 36.46 2.29
561 564 5.521010 GGATATGGTGAAATCGTTCGTTGTA 59.479 40.000 0.00 0.00 36.46 2.41
562 565 4.331717 GGATATGGTGAAATCGTTCGTTGT 59.668 41.667 0.00 0.00 36.46 3.32
563 566 4.260620 GGGATATGGTGAAATCGTTCGTTG 60.261 45.833 0.00 0.00 36.46 4.10
564 567 3.875134 GGGATATGGTGAAATCGTTCGTT 59.125 43.478 0.00 0.00 36.46 3.85
565 568 3.134081 AGGGATATGGTGAAATCGTTCGT 59.866 43.478 0.00 0.00 36.46 3.85
566 569 3.728845 AGGGATATGGTGAAATCGTTCG 58.271 45.455 0.00 0.00 36.46 3.95
567 570 4.962155 AGAGGGATATGGTGAAATCGTTC 58.038 43.478 0.00 0.00 0.00 3.95
568 571 6.295916 GGATAGAGGGATATGGTGAAATCGTT 60.296 42.308 0.00 0.00 0.00 3.85
569 572 5.187967 GGATAGAGGGATATGGTGAAATCGT 59.812 44.000 0.00 0.00 0.00 3.73
570 573 5.395768 GGGATAGAGGGATATGGTGAAATCG 60.396 48.000 0.00 0.00 0.00 3.34
571 574 5.728741 AGGGATAGAGGGATATGGTGAAATC 59.271 44.000 0.00 0.00 0.00 2.17
572 575 5.680327 AGGGATAGAGGGATATGGTGAAAT 58.320 41.667 0.00 0.00 0.00 2.17
573 576 5.106631 AGGGATAGAGGGATATGGTGAAA 57.893 43.478 0.00 0.00 0.00 2.69
574 577 4.785173 AGGGATAGAGGGATATGGTGAA 57.215 45.455 0.00 0.00 0.00 3.18
575 578 4.361367 AGAAGGGATAGAGGGATATGGTGA 59.639 45.833 0.00 0.00 0.00 4.02
576 579 4.693420 AGAAGGGATAGAGGGATATGGTG 58.307 47.826 0.00 0.00 0.00 4.17
577 580 5.578927 GCTAGAAGGGATAGAGGGATATGGT 60.579 48.000 0.00 0.00 0.00 3.55
578 581 4.898861 GCTAGAAGGGATAGAGGGATATGG 59.101 50.000 0.00 0.00 0.00 2.74
579 582 5.523588 TGCTAGAAGGGATAGAGGGATATG 58.476 45.833 0.00 0.00 0.00 1.78
580 583 5.822774 TGCTAGAAGGGATAGAGGGATAT 57.177 43.478 0.00 0.00 0.00 1.63
581 584 5.822774 ATGCTAGAAGGGATAGAGGGATA 57.177 43.478 0.00 0.00 0.00 2.59
582 585 4.708420 ATGCTAGAAGGGATAGAGGGAT 57.292 45.455 0.00 0.00 0.00 3.85
583 586 4.570933 GCTATGCTAGAAGGGATAGAGGGA 60.571 50.000 0.00 0.00 39.09 4.20
584 587 3.704061 GCTATGCTAGAAGGGATAGAGGG 59.296 52.174 0.00 0.00 39.09 4.30
585 588 3.704061 GGCTATGCTAGAAGGGATAGAGG 59.296 52.174 0.00 0.00 39.09 3.69
586 589 4.348486 TGGCTATGCTAGAAGGGATAGAG 58.652 47.826 0.00 0.00 39.09 2.43
587 590 4.202727 ACTGGCTATGCTAGAAGGGATAGA 60.203 45.833 9.78 0.00 39.54 1.98
588 591 4.081752 CACTGGCTATGCTAGAAGGGATAG 60.082 50.000 9.78 0.00 39.54 2.08
589 592 3.834813 CACTGGCTATGCTAGAAGGGATA 59.165 47.826 9.78 0.00 39.54 2.59
590 593 2.636893 CACTGGCTATGCTAGAAGGGAT 59.363 50.000 9.78 0.00 39.54 3.85
591 594 2.042464 CACTGGCTATGCTAGAAGGGA 58.958 52.381 9.78 0.00 39.54 4.20
592 595 1.542108 GCACTGGCTATGCTAGAAGGG 60.542 57.143 9.78 0.00 39.54 3.95
593 596 1.139654 TGCACTGGCTATGCTAGAAGG 59.860 52.381 9.78 0.97 43.77 3.46
594 597 2.208431 GTGCACTGGCTATGCTAGAAG 58.792 52.381 10.32 3.49 43.77 2.85
595 598 1.554617 TGTGCACTGGCTATGCTAGAA 59.445 47.619 19.41 0.00 43.77 2.10
596 599 1.137675 CTGTGCACTGGCTATGCTAGA 59.862 52.381 19.41 0.00 43.77 2.43
597 600 1.579698 CTGTGCACTGGCTATGCTAG 58.420 55.000 19.41 0.00 43.77 3.42
598 601 0.462581 GCTGTGCACTGGCTATGCTA 60.463 55.000 23.15 0.00 43.77 3.49
599 602 1.748122 GCTGTGCACTGGCTATGCT 60.748 57.895 23.15 0.00 43.77 3.79
600 603 2.768492 GGCTGTGCACTGGCTATGC 61.768 63.158 33.57 18.37 43.68 3.14
601 604 0.178767 TAGGCTGTGCACTGGCTATG 59.821 55.000 38.73 15.55 45.99 2.23
602 605 0.467384 CTAGGCTGTGCACTGGCTAT 59.533 55.000 40.52 28.49 46.24 2.97
603 606 1.900351 CTAGGCTGTGCACTGGCTA 59.100 57.895 38.97 38.97 45.99 3.93
605 608 3.130160 GCTAGGCTGTGCACTGGC 61.130 66.667 33.79 33.79 39.95 4.85
606 609 2.437359 GGCTAGGCTGTGCACTGG 60.437 66.667 23.15 14.51 0.00 4.00
607 610 1.744368 CTGGCTAGGCTGTGCACTG 60.744 63.158 19.41 18.94 0.00 3.66
608 611 2.667418 CTGGCTAGGCTGTGCACT 59.333 61.111 19.41 0.00 0.00 4.40
609 612 3.130160 GCTGGCTAGGCTGTGCAC 61.130 66.667 21.59 10.75 0.00 4.57
610 613 4.765449 CGCTGGCTAGGCTGTGCA 62.765 66.667 20.81 0.00 0.00 4.57
672 675 3.007940 TCGTCAATTGATCAAGTGGGTCT 59.992 43.478 29.58 2.97 37.05 3.85
697 700 1.098712 AGGAAGAACGTGGCGCAAAA 61.099 50.000 10.83 0.00 0.00 2.44
702 705 1.471684 ACTAGTAGGAAGAACGTGGCG 59.528 52.381 1.45 0.00 0.00 5.69
718 826 8.519526 CCAACTGCCTATCTAATCTTAGACTAG 58.480 40.741 1.87 0.00 42.13 2.57
730 838 5.396772 CCAGTGATTTCCAACTGCCTATCTA 60.397 44.000 0.00 0.00 0.00 1.98
742 850 2.622942 GTCAAGTTGCCAGTGATTTCCA 59.377 45.455 0.00 0.00 0.00 3.53
758 866 3.887741 TGTGCATGATTTCGTTGTCAAG 58.112 40.909 0.00 0.00 0.00 3.02
1021 1162 0.836400 TCCTTGTCCTCCGCTCCTTT 60.836 55.000 0.00 0.00 0.00 3.11
1092 1246 2.397044 AATTGCCCTTGTTCCTTGGA 57.603 45.000 0.00 0.00 0.00 3.53
1183 1337 3.328343 TGACATACGGGAAGGAAGGAAAA 59.672 43.478 0.00 0.00 0.00 2.29
1188 1342 4.827835 TCTATCTGACATACGGGAAGGAAG 59.172 45.833 0.00 0.00 0.00 3.46
1551 1735 2.599578 ACCTCGGCCGTGTACACT 60.600 61.111 27.15 0.00 0.00 3.55
1764 1949 0.737367 CTTTCATGACGAGCCAGCGA 60.737 55.000 0.00 0.00 34.83 4.93
1809 1994 2.119611 TCGGAGGTCTTGGCCAGA 59.880 61.111 5.11 2.78 0.00 3.86
1890 2084 3.836176 GACCACGTCGCCGTCAAGT 62.836 63.158 0.00 0.00 46.28 3.16
2058 2252 3.583276 CTGGAACACGCGTGGGCTA 62.583 63.158 39.21 26.80 36.88 3.93
2669 2877 4.277423 GTCTAGCTCACTAGTTCATCTCCC 59.723 50.000 0.00 0.00 45.32 4.30
2688 2896 3.550639 CGGTAACAGTTGGTTGACGTCTA 60.551 47.826 17.92 6.32 40.73 2.59
2707 2915 5.632118 ACATCTCTATGGTAGTACATCGGT 58.368 41.667 2.06 0.00 37.43 4.69
2715 2923 9.019656 GTTGATCAGATACATCTCTATGGTAGT 57.980 37.037 0.00 0.00 37.43 2.73
2716 2924 8.180920 CGTTGATCAGATACATCTCTATGGTAG 58.819 40.741 0.00 0.00 37.43 3.18
2746 2955 5.520288 CCAAGAGTCCGTGACACTTATATTG 59.480 44.000 13.31 2.37 40.38 1.90
2753 2962 0.389391 CACCAAGAGTCCGTGACACT 59.611 55.000 3.68 3.19 35.18 3.55
2767 2977 3.433343 ACAATCCATCAATGAGCACCAA 58.567 40.909 0.00 0.00 0.00 3.67
2859 3101 0.167470 CTGAACAGCATCAACAGGCG 59.833 55.000 0.00 0.00 33.30 5.52
2874 3116 2.221169 GGATGCCAATGATACGCTGAA 58.779 47.619 0.00 0.00 0.00 3.02
2889 3131 4.365723 CAATTCAAGTGCTAATGGGATGC 58.634 43.478 0.00 0.00 0.00 3.91
2942 3214 3.596214 ACGATTTAACCGAACAGATGCT 58.404 40.909 0.00 0.00 0.00 3.79
2947 3219 4.794762 TGATACGACGATTTAACCGAACAG 59.205 41.667 0.00 0.00 0.00 3.16
3015 3289 7.227512 GCAATGATGAGTGCTTTATTAGTAGGT 59.772 37.037 0.00 0.00 40.12 3.08
3016 3290 7.227314 TGCAATGATGAGTGCTTTATTAGTAGG 59.773 37.037 6.11 0.00 43.72 3.18
3059 3356 8.418662 GGGTTAATTTACAGAAAACAGAAGGTT 58.581 33.333 0.00 0.00 42.98 3.50
3060 3357 7.255346 CGGGTTAATTTACAGAAAACAGAAGGT 60.255 37.037 0.00 0.00 0.00 3.50
3062 3359 6.581166 GCGGGTTAATTTACAGAAAACAGAAG 59.419 38.462 0.00 0.00 0.00 2.85
3063 3360 6.039493 TGCGGGTTAATTTACAGAAAACAGAA 59.961 34.615 0.00 0.00 0.00 3.02
3165 3468 8.627208 ATTCGTCTGGCTTAAATATGAATGAT 57.373 30.769 0.00 0.00 0.00 2.45
3201 3504 6.916440 ACCGAAAGTCAGTTTTTGTTAAACT 58.084 32.000 0.00 0.00 40.80 2.66
3202 3505 7.571089 AACCGAAAGTCAGTTTTTGTTAAAC 57.429 32.000 0.00 0.00 0.00 2.01
3203 3506 9.857957 ATTAACCGAAAGTCAGTTTTTGTTAAA 57.142 25.926 13.02 3.28 37.62 1.52
3208 3516 7.979115 TTGATTAACCGAAAGTCAGTTTTTG 57.021 32.000 0.00 0.00 0.00 2.44
3215 3523 5.000591 TGCAGATTGATTAACCGAAAGTCA 58.999 37.500 0.00 0.00 0.00 3.41
3216 3524 5.545658 TGCAGATTGATTAACCGAAAGTC 57.454 39.130 0.00 0.00 0.00 3.01
3217 3525 5.473504 AGTTGCAGATTGATTAACCGAAAGT 59.526 36.000 0.00 0.00 0.00 2.66
3383 3696 6.017934 CCGTGCACTATAGATTAAGTTTGCAT 60.018 38.462 16.19 0.00 30.37 3.96
3470 3785 7.600752 GGTTATCGATATTTCCTTTCCTCTCAG 59.399 40.741 5.84 0.00 0.00 3.35
3482 3798 8.009974 GTGTACATGCTTGGTTATCGATATTTC 58.990 37.037 5.84 0.56 0.00 2.17
3498 3814 3.307059 GGTTTCTCAGAGGTGTACATGCT 60.307 47.826 0.00 0.00 0.00 3.79
3504 3820 1.544691 GCGAGGTTTCTCAGAGGTGTA 59.455 52.381 0.00 0.00 39.95 2.90
3526 3842 7.184862 AGATGAGGAATATGTTGTTTTTCCCT 58.815 34.615 0.00 0.00 38.73 4.20
3544 3861 2.366916 ACTCGCCTGGAATAAGATGAGG 59.633 50.000 0.00 0.00 0.00 3.86
3567 3884 2.202716 CTCTCTCACGCGCATGCT 60.203 61.111 17.13 0.00 39.65 3.79
3614 3951 1.759445 TGCTCAGTCCTAAGGCATCTC 59.241 52.381 0.00 0.00 0.00 2.75
3615 3952 1.484240 GTGCTCAGTCCTAAGGCATCT 59.516 52.381 0.00 0.00 35.37 2.90
3616 3953 1.208052 TGTGCTCAGTCCTAAGGCATC 59.792 52.381 0.00 0.00 35.37 3.91
3617 3954 1.279496 TGTGCTCAGTCCTAAGGCAT 58.721 50.000 0.00 0.00 35.37 4.40
3618 3955 1.279496 ATGTGCTCAGTCCTAAGGCA 58.721 50.000 0.00 0.00 0.00 4.75
3654 3991 2.047274 TGGCCTTAGTGCTCACGC 60.047 61.111 3.32 0.00 36.20 5.34
3655 3992 2.103042 GCTGGCCTTAGTGCTCACG 61.103 63.158 3.32 0.00 36.20 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.