Multiple sequence alignment - TraesCS2D01G198600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G198600 chr2D 100.000 4292 0 0 1 4292 147350738 147355029 0.000000e+00 7926
1 TraesCS2D01G198600 chr2A 93.059 3285 169 26 1 3251 155162420 155159161 0.000000e+00 4748
2 TraesCS2D01G198600 chr2B 93.320 1961 106 13 1322 3272 207060315 207062260 0.000000e+00 2872
3 TraesCS2D01G198600 chr2B 86.825 1055 86 28 1 1017 207059050 207060089 0.000000e+00 1129
4 TraesCS2D01G198600 chr2B 90.654 214 13 2 1073 1286 207060107 207060313 1.180000e-70 278
5 TraesCS2D01G198600 chr2B 73.097 762 172 28 3274 4019 600714794 600715538 1.540000e-59 241
6 TraesCS2D01G198600 chr2B 74.570 291 62 10 3275 3561 627068297 627068579 2.710000e-22 117
7 TraesCS2D01G198600 chr3B 93.222 1018 69 0 3275 4292 544921526 544920509 0.000000e+00 1498
8 TraesCS2D01G198600 chr3B 93.229 1019 67 2 3275 4292 545008170 545007153 0.000000e+00 1498
9 TraesCS2D01G198600 chr7B 93.005 1015 69 2 3278 4292 138662511 138663523 0.000000e+00 1480
10 TraesCS2D01G198600 chr1B 92.738 1019 73 1 3275 4292 269085476 269086494 0.000000e+00 1471
11 TraesCS2D01G198600 chr1B 82.645 605 101 3 3274 3876 410663825 410663223 2.270000e-147 532
12 TraesCS2D01G198600 chr7D 90.472 1018 97 0 3275 4292 252026451 252025434 0.000000e+00 1343
13 TraesCS2D01G198600 chr4B 80.176 1024 171 12 3275 4292 507233031 507234028 0.000000e+00 737
14 TraesCS2D01G198600 chr4D 89.695 524 54 0 3275 3798 276625701 276626224 0.000000e+00 669
15 TraesCS2D01G198600 chr1A 78.481 1027 201 14 3275 4292 544427582 544426567 0.000000e+00 654
16 TraesCS2D01G198600 chr6B 73.768 751 173 20 3274 4014 165368981 165368245 1.520000e-69 274
17 TraesCS2D01G198600 chr3A 72.780 687 171 14 3274 3953 216647565 216646888 7.230000e-53 219
18 TraesCS2D01G198600 chr4A 71.801 422 113 6 3476 3894 86172392 86172810 9.750000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G198600 chr2D 147350738 147355029 4291 False 7926.000000 7926 100.000000 1 4292 1 chr2D.!!$F1 4291
1 TraesCS2D01G198600 chr2A 155159161 155162420 3259 True 4748.000000 4748 93.059000 1 3251 1 chr2A.!!$R1 3250
2 TraesCS2D01G198600 chr2B 207059050 207062260 3210 False 1426.333333 2872 90.266333 1 3272 3 chr2B.!!$F3 3271
3 TraesCS2D01G198600 chr2B 600714794 600715538 744 False 241.000000 241 73.097000 3274 4019 1 chr2B.!!$F1 745
4 TraesCS2D01G198600 chr3B 544920509 544921526 1017 True 1498.000000 1498 93.222000 3275 4292 1 chr3B.!!$R1 1017
5 TraesCS2D01G198600 chr3B 545007153 545008170 1017 True 1498.000000 1498 93.229000 3275 4292 1 chr3B.!!$R2 1017
6 TraesCS2D01G198600 chr7B 138662511 138663523 1012 False 1480.000000 1480 93.005000 3278 4292 1 chr7B.!!$F1 1014
7 TraesCS2D01G198600 chr1B 269085476 269086494 1018 False 1471.000000 1471 92.738000 3275 4292 1 chr1B.!!$F1 1017
8 TraesCS2D01G198600 chr1B 410663223 410663825 602 True 532.000000 532 82.645000 3274 3876 1 chr1B.!!$R1 602
9 TraesCS2D01G198600 chr7D 252025434 252026451 1017 True 1343.000000 1343 90.472000 3275 4292 1 chr7D.!!$R1 1017
10 TraesCS2D01G198600 chr4B 507233031 507234028 997 False 737.000000 737 80.176000 3275 4292 1 chr4B.!!$F1 1017
11 TraesCS2D01G198600 chr4D 276625701 276626224 523 False 669.000000 669 89.695000 3275 3798 1 chr4D.!!$F1 523
12 TraesCS2D01G198600 chr1A 544426567 544427582 1015 True 654.000000 654 78.481000 3275 4292 1 chr1A.!!$R1 1017
13 TraesCS2D01G198600 chr6B 165368245 165368981 736 True 274.000000 274 73.768000 3274 4014 1 chr6B.!!$R1 740
14 TraesCS2D01G198600 chr3A 216646888 216647565 677 True 219.000000 219 72.780000 3274 3953 1 chr3A.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 645 0.530288 CGTTCCCATTTCGCCCAAAT 59.470 50.0 0.0 0.0 34.79 2.32 F
1519 1586 0.113776 AGTACCTGACGGAAGGGTCA 59.886 55.0 10.1 0.0 44.25 4.02 F
2396 2466 0.032130 GAAGGAGTGCGCGATATGGA 59.968 55.0 12.1 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 1708 1.210931 CTTGCATGCGTGGGAGTTG 59.789 57.895 14.09 0.0 0.00 3.16 R
3174 3245 1.074951 TCCTCGTCAGCACAGGAGA 59.925 57.895 6.27 0.0 32.26 3.71 R
3598 3694 0.030235 CGTGATTCCATCCGCGAGTA 59.970 55.000 8.23 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.565213 GAATCACATTAAAGAGTTCTGAAATGG 57.435 33.333 15.48 8.67 35.18 3.16
85 86 5.835819 TGGTCAACCAATGGAAACTATTGAA 59.164 36.000 6.16 0.00 44.35 2.69
169 170 8.514330 TCAACAGTTACTTCAAATTACTTGGT 57.486 30.769 0.00 0.00 35.56 3.67
332 334 3.548668 GCAGTTGGTTGTCGGTTTAAAAC 59.451 43.478 0.00 0.00 0.00 2.43
418 420 7.743116 TGGTGGAGTTTAAGTTATATGGAGA 57.257 36.000 0.00 0.00 0.00 3.71
419 421 8.331931 TGGTGGAGTTTAAGTTATATGGAGAT 57.668 34.615 0.00 0.00 0.00 2.75
420 422 8.429641 TGGTGGAGTTTAAGTTATATGGAGATC 58.570 37.037 0.00 0.00 0.00 2.75
463 465 3.329889 TGTTGCTCGGGGCCTCAT 61.330 61.111 1.96 0.00 40.92 2.90
526 543 6.777101 TGCTTTGCATATTTGATTTGAATGC 58.223 32.000 0.00 0.00 42.52 3.56
550 567 3.655276 TGGTTGGTCTTAGTCGTCTTC 57.345 47.619 0.00 0.00 0.00 2.87
552 569 2.030451 GGTTGGTCTTAGTCGTCTTCGT 60.030 50.000 0.00 0.00 38.33 3.85
554 571 1.538512 TGGTCTTAGTCGTCTTCGTGG 59.461 52.381 0.00 0.00 38.33 4.94
571 588 2.792890 CGTGGCAATCTACTGACTCGAG 60.793 54.545 11.84 11.84 42.52 4.04
628 645 0.530288 CGTTCCCATTTCGCCCAAAT 59.470 50.000 0.00 0.00 34.79 2.32
630 647 2.611722 CGTTCCCATTTCGCCCAAATTT 60.612 45.455 0.00 0.00 31.79 1.82
631 648 3.407698 GTTCCCATTTCGCCCAAATTTT 58.592 40.909 0.00 0.00 31.79 1.82
647 667 6.156775 CCCAAATTTTTCCAAGTGGAGGATAT 59.843 38.462 0.00 0.00 46.36 1.63
673 693 7.220030 AGATTAATATTGAGATCAAGCACCGT 58.780 34.615 0.00 0.00 39.47 4.83
721 741 4.019174 GAGAAGATCAATCCCCAAAGCAA 58.981 43.478 0.00 0.00 0.00 3.91
747 767 4.296583 ACCCAGGTTATTTTTAGGGGATGT 59.703 41.667 0.00 0.00 40.64 3.06
774 794 9.965902 ATCTTCTTAAATCTTCCTTGCTTAGAA 57.034 29.630 0.00 0.00 0.00 2.10
782 802 2.902608 TCCTTGCTTAGAAGGACTCCA 58.097 47.619 8.40 0.00 45.52 3.86
783 803 3.454858 TCCTTGCTTAGAAGGACTCCAT 58.545 45.455 8.40 0.00 45.52 3.41
784 804 3.198635 TCCTTGCTTAGAAGGACTCCATG 59.801 47.826 8.40 0.00 45.52 3.66
785 805 3.198635 CCTTGCTTAGAAGGACTCCATGA 59.801 47.826 0.00 0.00 44.87 3.07
786 806 4.141528 CCTTGCTTAGAAGGACTCCATGAT 60.142 45.833 0.00 0.00 44.87 2.45
789 840 6.106648 TGCTTAGAAGGACTCCATGATATG 57.893 41.667 0.00 0.00 0.00 1.78
875 926 3.097614 GGACCTTCTCAGCCTACACTTA 58.902 50.000 0.00 0.00 0.00 2.24
888 939 4.202233 GCCTACACTTACTCCCTGGTAATC 60.202 50.000 0.00 0.00 32.25 1.75
1026 1077 8.013947 GGTTAAAAGAAGTTTCGGTATGAGTTC 58.986 37.037 0.00 0.00 0.00 3.01
1128 1179 0.747255 GATCCTTGCCGTAGAGCTCA 59.253 55.000 17.77 0.00 0.00 4.26
1224 1283 1.312815 GCGGGAATGAAGAGGATTGG 58.687 55.000 0.00 0.00 0.00 3.16
1225 1284 1.312815 CGGGAATGAAGAGGATTGGC 58.687 55.000 0.00 0.00 0.00 4.52
1226 1285 1.312815 GGGAATGAAGAGGATTGGCG 58.687 55.000 0.00 0.00 0.00 5.69
1290 1349 6.318144 CCAACTATCTTACTCAGGTTCGTAGA 59.682 42.308 0.00 0.00 0.00 2.59
1318 1377 2.825836 CCTGCAGGTCCGGCATTC 60.826 66.667 25.53 0.00 41.06 2.67
1368 1435 6.710744 AGTTCGTTGTGAAGAGGTGATAATTT 59.289 34.615 0.00 0.00 37.23 1.82
1514 1581 0.888619 TGCAGAGTACCTGACGGAAG 59.111 55.000 13.57 0.00 45.78 3.46
1516 1583 0.818296 CAGAGTACCTGACGGAAGGG 59.182 60.000 10.10 0.00 45.78 3.95
1519 1586 0.113776 AGTACCTGACGGAAGGGTCA 59.886 55.000 10.10 0.00 44.25 4.02
1534 1601 2.525629 TCACCGGAGTTGGCCTGA 60.526 61.111 9.46 0.00 0.00 3.86
1542 1609 2.440247 GTTGGCCTGATTCCCCGG 60.440 66.667 3.32 0.00 0.00 5.73
1593 1660 2.246469 ACAAGTATGCATTTGCCACCA 58.754 42.857 3.54 0.00 41.18 4.17
1601 1668 1.074072 ATTTGCCACCACCGTGCTA 59.926 52.632 0.00 0.00 38.79 3.49
1610 1677 1.878522 CACCGTGCTATCGACTGCC 60.879 63.158 8.68 0.94 0.00 4.85
1641 1708 1.480954 TCTTGGGCTACGGTGAGAATC 59.519 52.381 0.00 0.00 0.00 2.52
1702 1769 2.798976 TTGCCACACTGCTCAATTTC 57.201 45.000 0.00 0.00 0.00 2.17
1798 1865 3.354645 TGCGTCGTCGTGCTCTCT 61.355 61.111 3.66 0.00 39.49 3.10
1849 1916 1.001641 GCAGTGCTTCCTGGGTGAT 60.002 57.895 8.18 0.00 32.92 3.06
1996 2063 2.513666 ATCGTCCCGGCGTACGTA 60.514 61.111 24.61 15.29 42.24 3.57
2008 2075 1.703438 CGTACGTAGCCGAGCTCTGT 61.703 60.000 12.85 3.31 40.44 3.41
2396 2466 0.032130 GAAGGAGTGCGCGATATGGA 59.968 55.000 12.10 0.00 0.00 3.41
2887 2957 1.292541 GAAGAGGGCGTCGGTCTTT 59.707 57.895 4.90 0.00 30.55 2.52
2933 3003 4.778143 GCTCCGTCCCCGTGCAAT 62.778 66.667 0.00 0.00 33.67 3.56
2995 3065 0.944386 TCTTCTTTTGTGCGTGCCTC 59.056 50.000 0.00 0.00 0.00 4.70
3022 3092 4.390556 AGGAGGAGGCGAGCCAGT 62.391 66.667 17.18 0.00 38.92 4.00
3034 3104 1.531149 CGAGCCAGTTTCATTCACGTT 59.469 47.619 0.00 0.00 0.00 3.99
3124 3194 0.179034 CCAGAGGCAAGTAGGATGGC 60.179 60.000 0.00 0.00 43.17 4.40
3237 3320 1.669760 TGGATGTTCGTGCGGGAAC 60.670 57.895 11.54 11.54 45.10 3.62
3336 3427 4.941263 TGCTTCCACCATGAGTTTACATAC 59.059 41.667 0.00 0.00 0.00 2.39
3369 3460 3.511477 ACACCACTCCTCACTACTCATT 58.489 45.455 0.00 0.00 0.00 2.57
3447 3543 2.047830 GACCATACCCTTCCTTCCGAT 58.952 52.381 0.00 0.00 0.00 4.18
3616 3712 4.475312 AGCTACTCGCGGATGGAATCAC 62.475 54.545 6.13 0.00 43.47 3.06
3709 3805 4.340894 CACGTTAGTGGGACATGATTTG 57.659 45.455 0.00 0.00 44.52 2.32
3736 3832 2.247372 TCATCCTCCTGGTCACATAGGA 59.753 50.000 2.40 2.40 40.73 2.94
3877 3973 1.306568 TCCGACATGGGATCCACCA 60.307 57.895 15.23 3.27 46.24 4.17
4000 4096 3.525537 CACGTGCTGACTCTAATCCATT 58.474 45.455 0.82 0.00 0.00 3.16
4004 4100 4.393062 CGTGCTGACTCTAATCCATTGTTT 59.607 41.667 0.00 0.00 0.00 2.83
4070 4167 0.179018 GCGGCCCATGACCTATCTTT 60.179 55.000 0.00 0.00 0.00 2.52
4153 4250 1.880340 GCGATCTCTTGCACCCTCG 60.880 63.158 0.00 0.00 0.00 4.63
4156 4253 1.134367 CGATCTCTTGCACCCTCGTTA 59.866 52.381 0.00 0.00 0.00 3.18
4166 4263 1.881252 CCCTCGTTACGCCAATCCG 60.881 63.158 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.433680 ACTTTCAATAGTTTCCATTGGTTGAC 58.566 34.615 1.86 0.64 34.73 3.18
85 86 7.750229 TCTCATTTGCAGAGTGAAATAACTT 57.250 32.000 1.80 0.00 34.73 2.66
196 198 1.742268 GCTGCATGGAGAAAAGAGTCC 59.258 52.381 19.59 0.00 0.00 3.85
332 334 6.403866 ACCAGCTATCTCATTCAGTTCTAG 57.596 41.667 0.00 0.00 0.00 2.43
418 420 2.435805 AGCAGTCCAATGGTATGACGAT 59.564 45.455 9.93 0.00 34.24 3.73
419 421 1.831106 AGCAGTCCAATGGTATGACGA 59.169 47.619 9.93 0.00 34.24 4.20
420 422 2.315925 AGCAGTCCAATGGTATGACG 57.684 50.000 9.93 0.00 34.24 4.35
526 543 2.473984 GACGACTAAGACCAACCAAACG 59.526 50.000 0.00 0.00 0.00 3.60
550 567 1.132453 TCGAGTCAGTAGATTGCCACG 59.868 52.381 0.00 0.00 0.00 4.94
552 569 2.723273 TCTCGAGTCAGTAGATTGCCA 58.277 47.619 13.13 0.00 0.00 4.92
554 571 6.266323 TGTAAATCTCGAGTCAGTAGATTGC 58.734 40.000 13.13 8.97 39.34 3.56
647 667 8.367911 ACGGTGCTTGATCTCAATATTAATCTA 58.632 33.333 0.00 0.00 35.02 1.98
671 691 3.576356 GATCCCCACATGCGCACG 61.576 66.667 14.90 7.29 0.00 5.34
673 693 4.854924 CGGATCCCCACATGCGCA 62.855 66.667 14.96 14.96 30.45 6.09
721 741 3.308617 CCCCTAAAAATAACCTGGGTCGT 60.309 47.826 0.00 0.00 33.13 4.34
781 801 8.726068 TGCCGTAAATAATTGTACCATATCATG 58.274 33.333 0.00 0.00 0.00 3.07
782 802 8.856153 TGCCGTAAATAATTGTACCATATCAT 57.144 30.769 0.00 0.00 0.00 2.45
783 803 8.856153 ATGCCGTAAATAATTGTACCATATCA 57.144 30.769 0.00 0.00 0.00 2.15
785 805 8.875803 CGTATGCCGTAAATAATTGTACCATAT 58.124 33.333 0.00 0.00 0.00 1.78
786 806 7.331440 CCGTATGCCGTAAATAATTGTACCATA 59.669 37.037 0.00 0.00 33.66 2.74
789 840 5.466393 ACCGTATGCCGTAAATAATTGTACC 59.534 40.000 0.00 0.00 33.66 3.34
888 939 7.237209 AGTAACAACTACCTTAACTACCCTG 57.763 40.000 0.00 0.00 0.00 4.45
957 1008 1.971695 CACGCCCAAGAAACCCTCC 60.972 63.158 0.00 0.00 0.00 4.30
1000 1051 7.430992 ACTCATACCGAAACTTCTTTTAACC 57.569 36.000 0.00 0.00 0.00 2.85
1026 1077 0.732571 ATCTAAACCGCCATGCAACG 59.267 50.000 0.00 0.00 0.00 4.10
1128 1179 1.577328 CGTCCTTGCGCCAAAGACAT 61.577 55.000 4.18 0.00 35.32 3.06
1185 1244 1.073763 CAGAATGAACCCCTCCACACA 59.926 52.381 0.00 0.00 39.69 3.72
1224 1283 0.249114 GAAGAATCCCTCGACTCCGC 60.249 60.000 0.00 0.00 35.37 5.54
1225 1284 1.335496 GAGAAGAATCCCTCGACTCCG 59.665 57.143 0.00 0.00 37.07 4.63
1226 1285 2.621526 GAGAGAAGAATCCCTCGACTCC 59.378 54.545 0.00 0.00 34.15 3.85
1266 1325 7.148289 TGTCTACGAACCTGAGTAAGATAGTTG 60.148 40.741 0.00 0.00 0.00 3.16
1290 1349 2.051941 CCTGCAGGTTGGCATTTGT 58.948 52.632 25.53 0.00 43.97 2.83
1318 1377 3.403038 TCCAAAGAAAGAAAGAGAGGCG 58.597 45.455 0.00 0.00 0.00 5.52
1514 1581 4.717313 GGCCAACTCCGGTGACCC 62.717 72.222 11.17 1.02 0.00 4.46
1516 1583 2.185310 ATCAGGCCAACTCCGGTGAC 62.185 60.000 11.17 0.00 0.00 3.67
1519 1586 1.299976 GAATCAGGCCAACTCCGGT 59.700 57.895 5.01 0.00 0.00 5.28
1534 1601 2.445845 TCGCCATCTCCGGGGAAT 60.446 61.111 8.88 0.00 44.36 3.01
1555 1622 3.615509 TTTACAGGGCGCCTTCCGG 62.616 63.158 28.56 13.23 37.44 5.14
1593 1660 2.348104 TGGCAGTCGATAGCACGGT 61.348 57.895 13.04 0.00 0.00 4.83
1601 1668 2.607750 AGGGGTGTGGCAGTCGAT 60.608 61.111 0.00 0.00 0.00 3.59
1610 1677 1.303643 GCCCAAGAAGAGGGGTGTG 60.304 63.158 0.00 0.00 46.86 3.82
1641 1708 1.210931 CTTGCATGCGTGGGAGTTG 59.789 57.895 14.09 0.00 0.00 3.16
1819 1886 1.450312 GCACTGCGCTACCAAGGAT 60.450 57.895 9.73 0.00 37.77 3.24
1820 1887 2.047274 GCACTGCGCTACCAAGGA 60.047 61.111 9.73 0.00 37.77 3.36
1838 1905 4.467084 GCGGCGATCACCCAGGAA 62.467 66.667 12.98 0.00 0.00 3.36
1996 2063 2.757917 GAGGGACAGAGCTCGGCT 60.758 66.667 14.20 2.93 43.88 5.52
2117 2184 1.837051 TCAGACACCAGGCGAGGTT 60.837 57.895 1.74 0.00 40.77 3.50
2131 2198 2.376109 GTTCCGGAGACTATGGTCAGA 58.624 52.381 12.16 0.00 44.36 3.27
2359 2429 2.427232 TCTTCCACCGTTTACGTCTG 57.573 50.000 0.00 0.00 37.74 3.51
2368 2438 1.371558 GCACTCCTTCTTCCACCGT 59.628 57.895 0.00 0.00 0.00 4.83
2858 2928 4.003788 CCTCTTCACCACGGCCGT 62.004 66.667 28.70 28.70 0.00 5.68
2864 2934 2.432628 CGACGCCCTCTTCACCAC 60.433 66.667 0.00 0.00 0.00 4.16
2872 2942 2.033194 CCAAAAGACCGACGCCCTC 61.033 63.158 0.00 0.00 0.00 4.30
2932 3002 1.589716 GGCAAACGAGCAAGCTCCAT 61.590 55.000 15.81 2.29 39.77 3.41
2933 3003 2.260869 GGCAAACGAGCAAGCTCCA 61.261 57.895 15.81 0.00 39.77 3.86
2995 3065 4.521062 CTCCTCCTCGCGCCAAGG 62.521 72.222 15.68 15.68 35.05 3.61
3022 3092 3.249080 GGAAAGACCGAACGTGAATGAAA 59.751 43.478 0.00 0.00 0.00 2.69
3034 3104 2.706890 GTGCTTATTGGGAAAGACCGA 58.293 47.619 0.00 0.00 40.11 4.69
3100 3170 1.679311 CTACTTGCCTCTGGTGCCA 59.321 57.895 0.00 0.00 0.00 4.92
3107 3177 1.488393 GAAGCCATCCTACTTGCCTCT 59.512 52.381 0.00 0.00 0.00 3.69
3134 3204 4.465512 GCATCGTGCCGCCAACAG 62.466 66.667 0.00 0.00 37.42 3.16
3174 3245 1.074951 TCCTCGTCAGCACAGGAGA 59.925 57.895 6.27 0.00 32.26 3.71
3237 3320 7.010923 TGTTCTCAAATTTCCAACATTTTTCCG 59.989 33.333 0.00 0.00 0.00 4.30
3316 3407 5.013704 AGGTGTATGTAAACTCATGGTGGAA 59.986 40.000 0.00 0.00 0.00 3.53
3336 3427 3.074412 GGAGTGGTGTTGTATTGAGGTG 58.926 50.000 0.00 0.00 0.00 4.00
3369 3460 2.519771 TCCTTAGGTTAGAGCGGTGA 57.480 50.000 0.00 0.00 0.00 4.02
3447 3543 6.209986 TGAGTGAACTCCTCGGTAGAATTTTA 59.790 38.462 7.96 0.00 42.20 1.52
3598 3694 0.030235 CGTGATTCCATCCGCGAGTA 59.970 55.000 8.23 0.00 0.00 2.59
3697 3793 5.888161 AGGATGAAACTACAAATCATGTCCC 59.112 40.000 0.00 0.00 42.70 4.46
3709 3805 3.260884 TGTGACCAGGAGGATGAAACTAC 59.739 47.826 0.00 0.00 38.69 2.73
3736 3832 2.980233 GCACCAAGACGCTTGCCT 60.980 61.111 12.35 0.16 0.00 4.75
3877 3973 1.847088 GGCTAAGTTCTGGGGAAGGAT 59.153 52.381 0.00 0.00 31.46 3.24
3881 3977 1.298667 GCGGCTAAGTTCTGGGGAA 59.701 57.895 0.00 0.00 0.00 3.97
4000 4096 2.880268 CACTGCATGAGTTCCTCAAACA 59.120 45.455 0.00 0.00 44.04 2.83
4004 4100 0.689055 AGCACTGCATGAGTTCCTCA 59.311 50.000 3.30 0.00 44.99 3.86
4059 4156 1.140852 CCGGCCATCAAAGATAGGTCA 59.859 52.381 2.24 0.00 0.00 4.02
4064 4161 1.208706 TGGACCGGCCATCAAAGATA 58.791 50.000 12.86 0.00 43.33 1.98
4093 4190 5.337571 GGATTCCTGCACGGATAAGATCATA 60.338 44.000 5.83 0.00 42.70 2.15
4166 4263 2.239907 ACTTTGTTCTGGGAGGATAGGC 59.760 50.000 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.