Multiple sequence alignment - TraesCS2D01G198400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G198400 chr2D 100.000 6888 0 0 1 6888 146394240 146401127 0.000000e+00 12720.0
1 TraesCS2D01G198400 chr2D 99.194 124 1 0 1987 2110 146396103 146396226 2.500000e-54 224.0
2 TraesCS2D01G198400 chr2D 99.194 124 1 0 1864 1987 146396226 146396349 2.500000e-54 224.0
3 TraesCS2D01G198400 chr2B 97.281 2170 49 8 2152 4313 206676983 206679150 0.000000e+00 3672.0
4 TraesCS2D01G198400 chr2B 94.254 1462 51 9 550 1987 206675384 206676836 0.000000e+00 2204.0
5 TraesCS2D01G198400 chr2B 96.515 1119 34 4 4932 6048 206680284 206681399 0.000000e+00 1845.0
6 TraesCS2D01G198400 chr2B 95.000 500 17 7 4432 4927 206679621 206680116 0.000000e+00 778.0
7 TraesCS2D01G198400 chr2B 86.691 556 58 7 1 552 206675108 206675651 2.750000e-168 603.0
8 TraesCS2D01G198400 chr2B 94.643 280 15 0 275 554 582801808 582801529 1.060000e-117 435.0
9 TraesCS2D01G198400 chr2B 96.032 252 10 0 6079 6330 206681400 206681651 1.790000e-110 411.0
10 TraesCS2D01G198400 chr2B 88.764 267 27 3 552 817 801215315 801215579 2.400000e-84 324.0
11 TraesCS2D01G198400 chr2B 87.085 271 30 5 550 819 718577655 718577389 1.120000e-77 302.0
12 TraesCS2D01G198400 chr2B 96.914 162 5 0 1989 2150 206676715 206676876 8.800000e-69 272.0
13 TraesCS2D01G198400 chr2A 94.128 2316 78 21 1989 4281 155784199 155781919 0.000000e+00 3470.0
14 TraesCS2D01G198400 chr2A 92.456 1193 44 8 825 1987 155785247 155784071 0.000000e+00 1663.0
15 TraesCS2D01G198400 chr2A 93.056 936 40 13 5498 6411 155780176 155779244 0.000000e+00 1345.0
16 TraesCS2D01G198400 chr2A 95.856 724 23 5 4780 5499 155781057 155780337 0.000000e+00 1164.0
17 TraesCS2D01G198400 chr2A 86.667 555 59 9 275 817 722516555 722516004 9.890000e-168 601.0
18 TraesCS2D01G198400 chr2A 88.657 335 13 12 4421 4731 155781395 155781062 1.080000e-102 385.0
19 TraesCS2D01G198400 chr2A 89.583 288 26 4 6603 6888 765513588 765513873 5.080000e-96 363.0
20 TraesCS2D01G198400 chr2A 87.847 288 29 6 6606 6888 19378742 19378456 3.980000e-87 333.0
21 TraesCS2D01G198400 chr2A 89.412 255 21 5 6638 6888 155779243 155778991 4.010000e-82 316.0
22 TraesCS2D01G198400 chr2A 90.295 237 18 5 16 248 155785510 155785275 8.680000e-79 305.0
23 TraesCS2D01G198400 chr2A 85.263 285 36 6 6607 6888 682202284 682202565 8.740000e-74 289.0
24 TraesCS2D01G198400 chr2A 85.017 287 34 9 6607 6888 657000975 657001257 4.070000e-72 283.0
25 TraesCS2D01G198400 chr2A 86.508 126 15 1 6465 6590 523457762 523457885 3.350000e-28 137.0
26 TraesCS2D01G198400 chr3D 82.561 906 90 41 4818 5675 394766588 394765703 0.000000e+00 736.0
27 TraesCS2D01G198400 chr3D 81.093 439 61 15 2037 2460 394768895 394768464 1.430000e-86 331.0
28 TraesCS2D01G198400 chr3D 85.106 329 39 6 3435 3762 394767546 394767227 1.850000e-85 327.0
29 TraesCS2D01G198400 chr3D 86.014 286 35 5 6606 6888 442978500 442978783 1.120000e-77 302.0
30 TraesCS2D01G198400 chr3D 76.540 682 78 39 2701 3361 394768208 394767588 1.450000e-76 298.0
31 TraesCS2D01G198400 chr3D 83.117 308 32 15 3820 4112 394767219 394766917 5.300000e-66 263.0
32 TraesCS2D01G198400 chr3D 82.008 239 35 5 5694 5930 394765474 394765242 5.450000e-46 196.0
33 TraesCS2D01G198400 chr3D 90.000 120 10 2 3888 4005 571341961 571342080 3.330000e-33 154.0
34 TraesCS2D01G198400 chr3D 80.117 171 18 8 1817 1986 394768977 394768822 5.650000e-21 113.0
35 TraesCS2D01G198400 chr3D 97.959 49 1 0 998 1046 394769798 394769750 1.230000e-12 86.1
36 TraesCS2D01G198400 chr3B 82.834 868 92 33 4828 5657 514007088 514006240 0.000000e+00 725.0
37 TraesCS2D01G198400 chr3B 76.792 879 112 60 2509 3361 514008759 514007947 6.430000e-110 409.0
38 TraesCS2D01G198400 chr3B 88.846 260 26 3 3504 3762 514007857 514007600 4.010000e-82 316.0
39 TraesCS2D01G198400 chr3B 84.064 251 26 8 3819 4061 514007597 514007353 5.370000e-56 230.0
40 TraesCS2D01G198400 chr3B 82.845 239 32 7 5694 5930 514006081 514005850 9.060000e-49 206.0
41 TraesCS2D01G198400 chr3B 83.594 128 17 3 6463 6590 262087161 262087284 4.360000e-22 117.0
42 TraesCS2D01G198400 chr3B 85.227 88 9 4 998 1082 514011331 514011245 3.420000e-13 87.9
43 TraesCS2D01G198400 chr3A 87.252 604 55 12 5081 5675 514168639 514168049 0.000000e+00 669.0
44 TraesCS2D01G198400 chr3A 76.437 887 114 65 2509 3361 514171043 514170218 6.480000e-105 392.0
45 TraesCS2D01G198400 chr3A 86.377 345 34 7 3420 3762 514170088 514169755 1.410000e-96 364.0
46 TraesCS2D01G198400 chr3A 87.273 275 20 7 553 819 112914325 112914592 4.040000e-77 300.0
47 TraesCS2D01G198400 chr3A 83.828 303 34 10 3820 4112 514169747 514169450 2.450000e-69 274.0
48 TraesCS2D01G198400 chr3A 79.135 393 64 13 2025 2406 514171535 514171150 8.870000e-64 255.0
49 TraesCS2D01G198400 chr3A 82.845 239 32 6 5694 5930 514167902 514167671 9.060000e-49 206.0
50 TraesCS2D01G198400 chr3A 79.651 172 18 10 1817 1986 514171606 514171450 2.630000e-19 108.0
51 TraesCS2D01G198400 chr3A 91.935 62 3 1 998 1057 514172353 514172292 1.230000e-12 86.1
52 TraesCS2D01G198400 chr5B 87.455 558 56 9 270 817 477882401 477882954 1.260000e-176 630.0
53 TraesCS2D01G198400 chr5B 88.973 263 25 4 552 814 655261178 655261436 8.620000e-84 322.0
54 TraesCS2D01G198400 chr5B 86.545 275 28 5 549 817 24046931 24047202 1.880000e-75 294.0
55 TraesCS2D01G198400 chr5B 85.663 279 36 4 6606 6884 30845204 30844930 2.430000e-74 291.0
56 TraesCS2D01G198400 chr4B 87.590 556 53 10 275 819 641425409 641424859 1.260000e-176 630.0
57 TraesCS2D01G198400 chr7A 94.681 282 14 1 273 554 84863865 84864145 2.950000e-118 436.0
58 TraesCS2D01G198400 chr7A 90.833 120 9 2 3888 4005 681275993 681276112 7.150000e-35 159.0
59 TraesCS2D01G198400 chr7A 84.496 129 17 2 6463 6591 602236572 602236447 2.610000e-24 124.0
60 TraesCS2D01G198400 chr6A 94.681 282 14 1 275 556 531702033 531702313 2.950000e-118 436.0
61 TraesCS2D01G198400 chr6A 94.891 274 14 0 277 550 608314547 608314274 4.940000e-116 429.0
62 TraesCS2D01G198400 chr6A 87.943 282 21 9 544 822 48054605 48054876 3.100000e-83 320.0
63 TraesCS2D01G198400 chr6A 83.190 232 28 8 3888 4112 32066592 32066365 1.170000e-47 202.0
64 TraesCS2D01G198400 chr5A 95.255 274 13 0 277 550 504717585 504717312 1.060000e-117 435.0
65 TraesCS2D01G198400 chr5A 86.071 280 33 6 6607 6884 680739046 680738771 5.220000e-76 296.0
66 TraesCS2D01G198400 chr1A 94.265 279 16 0 275 553 563257011 563256733 1.780000e-115 427.0
67 TraesCS2D01G198400 chr1B 89.781 274 25 3 545 817 675954754 675955025 1.420000e-91 348.0
68 TraesCS2D01G198400 chr1B 86.567 268 31 5 552 817 179513812 179514076 2.430000e-74 291.0
69 TraesCS2D01G198400 chr7B 87.589 282 32 3 6609 6888 336594280 336594000 2.400000e-84 324.0
70 TraesCS2D01G198400 chr7B 88.281 128 13 1 6463 6590 134222449 134222324 1.200000e-32 152.0
71 TraesCS2D01G198400 chr7B 88.372 129 11 3 6463 6591 263147612 263147488 1.200000e-32 152.0
72 TraesCS2D01G198400 chr5D 89.431 123 11 2 3888 4008 45712753 45712631 3.330000e-33 154.0
73 TraesCS2D01G198400 chr5D 96.970 33 1 0 6332 6364 7600843 7600875 1.000000e-03 56.5
74 TraesCS2D01G198400 chr6D 86.923 130 13 3 6463 6592 86735875 86735750 7.200000e-30 143.0
75 TraesCS2D01G198400 chr6B 84.375 128 18 1 6463 6590 47985542 47985667 2.610000e-24 124.0
76 TraesCS2D01G198400 chrUn 84.874 119 15 2 6463 6581 202168659 202168544 4.360000e-22 117.0
77 TraesCS2D01G198400 chrUn 84.874 119 15 2 6463 6581 202189844 202189729 4.360000e-22 117.0
78 TraesCS2D01G198400 chr4A 100.000 29 0 0 6336 6364 154519397 154519369 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G198400 chr2D 146394240 146401127 6887 False 12720.000000 12720 100.000000 1 6888 1 chr2D.!!$F1 6887
1 TraesCS2D01G198400 chr2B 206675108 206681651 6543 False 1397.857143 3672 94.669571 1 6330 7 chr2B.!!$F2 6329
2 TraesCS2D01G198400 chr2A 155778991 155785510 6519 True 1235.428571 3470 91.980000 16 6888 7 chr2A.!!$R3 6872
3 TraesCS2D01G198400 chr2A 722516004 722516555 551 True 601.000000 601 86.667000 275 817 1 chr2A.!!$R2 542
4 TraesCS2D01G198400 chr3D 394765242 394769798 4556 True 293.762500 736 83.562625 998 5930 8 chr3D.!!$R1 4932
5 TraesCS2D01G198400 chr3B 514005850 514011331 5481 True 328.983333 725 83.434667 998 5930 6 chr3B.!!$R1 4932
6 TraesCS2D01G198400 chr3A 514167671 514172353 4682 True 294.262500 669 83.432500 998 5930 8 chr3A.!!$R1 4932
7 TraesCS2D01G198400 chr5B 477882401 477882954 553 False 630.000000 630 87.455000 270 817 1 chr5B.!!$F2 547
8 TraesCS2D01G198400 chr4B 641424859 641425409 550 True 630.000000 630 87.590000 275 819 1 chr4B.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 215 0.399233 GAGGGTAGGAGAGGTGGCAT 60.399 60.000 0.00 0.00 0.00 4.40 F
1193 1203 1.028905 CAGAAGCCTCTCCTCGGTAG 58.971 60.000 0.00 0.00 0.00 3.18 F
1378 1393 1.080230 CTCCAGTGCTGTCTCCACG 60.080 63.158 0.00 0.00 38.22 4.94 F
2622 4508 0.598942 TTCATACGTATGGCGCGCAT 60.599 50.000 34.42 24.69 46.11 4.73 F
4290 6617 1.046204 GGCCCTACTACCGTGCTATT 58.954 55.000 0.00 0.00 0.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 2421 0.237498 GAAACCAGTAAGGCGTGTGC 59.763 55.000 0.00 0.00 43.14 4.57 R
2597 4483 2.408704 GCGCCATACGTATGAAGCTAAG 59.591 50.000 32.19 16.84 46.11 2.18 R
3204 5145 2.951642 TGAAACACTCAAAGGCAGGAAG 59.048 45.455 0.00 0.00 0.00 3.46 R
4324 6651 0.178767 GGAGCATGCCCCAAATTTCC 59.821 55.000 14.28 7.99 0.00 3.13 R
6242 9603 1.219213 ACCCCAAACCAAATCCACTCA 59.781 47.619 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.616842 GTTCGGCTCAAGGAAAAACTCA 59.383 45.455 0.00 0.00 0.00 3.41
69 70 2.494059 TCGGCTCAAGGAAAAACTCAG 58.506 47.619 0.00 0.00 0.00 3.35
115 117 3.055747 GTCAGACCCGAATCTCTCCTTTT 60.056 47.826 0.00 0.00 0.00 2.27
116 118 3.195825 TCAGACCCGAATCTCTCCTTTTC 59.804 47.826 0.00 0.00 0.00 2.29
134 136 1.344065 TCTTGAACACCCTTAGCCGA 58.656 50.000 0.00 0.00 0.00 5.54
148 150 3.708734 CCGACGGACGTTTGCCAC 61.709 66.667 8.64 0.00 40.78 5.01
197 199 7.331026 TCCATGATAGTTTTAGTTGTGAGAGG 58.669 38.462 0.00 0.00 0.00 3.69
200 202 7.786046 TGATAGTTTTAGTTGTGAGAGGGTA 57.214 36.000 0.00 0.00 0.00 3.69
213 215 0.399233 GAGGGTAGGAGAGGTGGCAT 60.399 60.000 0.00 0.00 0.00 4.40
261 265 7.835634 TTTTAAAACTGTTGTGGTTTGATCC 57.164 32.000 0.00 0.00 37.05 3.36
262 266 6.783708 TTAAAACTGTTGTGGTTTGATCCT 57.216 33.333 0.00 0.00 37.05 3.24
303 307 5.991606 GCATGTACAATGGTGCTATCTTAGA 59.008 40.000 11.12 0.00 34.85 2.10
433 437 5.449304 GTCTCACCACGTTTTTAGGAATTG 58.551 41.667 0.00 0.00 0.00 2.32
476 480 9.440761 AGACTAAGAAATGACCCATTATAGACT 57.559 33.333 0.00 0.00 32.43 3.24
477 481 9.699703 GACTAAGAAATGACCCATTATAGACTC 57.300 37.037 0.00 0.00 32.43 3.36
478 482 9.440761 ACTAAGAAATGACCCATTATAGACTCT 57.559 33.333 0.00 0.00 32.43 3.24
479 483 9.921637 CTAAGAAATGACCCATTATAGACTCTC 57.078 37.037 0.00 0.00 32.43 3.20
480 484 8.560124 AAGAAATGACCCATTATAGACTCTCT 57.440 34.615 0.00 0.00 32.43 3.10
481 485 8.560124 AGAAATGACCCATTATAGACTCTCTT 57.440 34.615 0.00 0.00 32.43 2.85
482 486 8.997734 AGAAATGACCCATTATAGACTCTCTTT 58.002 33.333 0.00 0.00 32.43 2.52
483 487 9.620259 GAAATGACCCATTATAGACTCTCTTTT 57.380 33.333 0.00 0.00 32.43 2.27
484 488 9.981460 AAATGACCCATTATAGACTCTCTTTTT 57.019 29.630 0.00 0.00 32.43 1.94
506 510 8.791327 TTTTTGTCATCTCTAGATTACATGCA 57.209 30.769 7.60 0.00 38.15 3.96
507 511 8.791327 TTTTGTCATCTCTAGATTACATGCAA 57.209 30.769 7.60 0.00 38.15 4.08
508 512 8.791327 TTTGTCATCTCTAGATTACATGCAAA 57.209 30.769 7.60 6.35 38.15 3.68
509 513 8.791327 TTGTCATCTCTAGATTACATGCAAAA 57.209 30.769 7.60 0.00 38.15 2.44
510 514 8.201554 TGTCATCTCTAGATTACATGCAAAAC 57.798 34.615 3.42 0.00 34.73 2.43
511 515 8.043113 TGTCATCTCTAGATTACATGCAAAACT 58.957 33.333 3.42 0.00 34.73 2.66
512 516 8.887717 GTCATCTCTAGATTACATGCAAAACTT 58.112 33.333 0.00 0.00 31.00 2.66
547 551 9.672673 ACTATCTTATCAACCATTATACATGCC 57.327 33.333 0.00 0.00 0.00 4.40
548 552 7.944729 ATCTTATCAACCATTATACATGCCC 57.055 36.000 0.00 0.00 0.00 5.36
549 553 7.090319 TCTTATCAACCATTATACATGCCCT 57.910 36.000 0.00 0.00 0.00 5.19
550 554 8.213489 TCTTATCAACCATTATACATGCCCTA 57.787 34.615 0.00 0.00 0.00 3.53
551 555 8.664992 TCTTATCAACCATTATACATGCCCTAA 58.335 33.333 0.00 0.00 0.00 2.69
552 556 8.862325 TTATCAACCATTATACATGCCCTAAG 57.138 34.615 0.00 0.00 0.00 2.18
553 557 5.630121 TCAACCATTATACATGCCCTAAGG 58.370 41.667 0.00 0.00 0.00 2.69
566 570 2.586425 CCCTAAGGGCATGTACAATGG 58.414 52.381 0.00 0.00 35.35 3.16
567 571 2.091885 CCCTAAGGGCATGTACAATGGT 60.092 50.000 0.00 0.00 35.35 3.55
568 572 3.137544 CCCTAAGGGCATGTACAATGGTA 59.862 47.826 0.00 0.00 35.35 3.25
569 573 4.986615 CCCTAAGGGCATGTACAATGGTAC 60.987 50.000 0.00 3.18 42.39 3.34
570 574 7.161179 CCCTAAGGGCATGTACAATGGTACT 62.161 48.000 11.70 0.00 42.47 2.73
571 575 7.880577 CCCTAAGGGCATGTACAATGGTACTA 61.881 46.154 11.70 0.00 42.47 1.82
572 576 9.113854 CCCTAAGGGCATGTACAATGGTACTAT 62.114 44.444 11.70 1.46 42.47 2.12
588 592 4.565564 GGTACTATCTTAAGTGTTGCCACG 59.434 45.833 1.63 0.00 46.56 4.94
591 595 5.408356 ACTATCTTAAGTGTTGCCACGTAG 58.592 41.667 1.63 0.00 46.56 3.51
600 604 3.687698 GTGTTGCCACGTAGGATAATTGT 59.312 43.478 8.04 0.00 41.22 2.71
609 613 4.468510 ACGTAGGATAATTGTTGAGGTGGA 59.531 41.667 0.00 0.00 0.00 4.02
631 635 6.673978 TGGAGGAGAGAGAATCCATAAGAAAA 59.326 38.462 0.00 0.00 39.47 2.29
633 637 7.135591 AGGAGAGAGAATCCATAAGAAAAGG 57.864 40.000 0.00 0.00 39.47 3.11
737 741 3.853355 AGGCTGAGAGATAACCCATTG 57.147 47.619 0.00 0.00 0.00 2.82
828 833 4.342378 TGTACATGCCCTAAAAACTGCAAA 59.658 37.500 0.00 0.00 37.27 3.68
1055 1061 3.565307 CCTTCAGGTATGCTCTCTCTCT 58.435 50.000 0.00 0.00 0.00 3.10
1092 1098 2.376855 CCTTTCCCCCTTCTCTGTCTTT 59.623 50.000 0.00 0.00 0.00 2.52
1193 1203 1.028905 CAGAAGCCTCTCCTCGGTAG 58.971 60.000 0.00 0.00 0.00 3.18
1199 1211 3.352748 TCTCCTCGGTAGCCCCCA 61.353 66.667 0.00 0.00 0.00 4.96
1378 1393 1.080230 CTCCAGTGCTGTCTCCACG 60.080 63.158 0.00 0.00 38.22 4.94
1433 1448 1.672363 TCGATCGTTCGCCTAAAGCTA 59.328 47.619 15.94 0.00 45.10 3.32
1550 1565 2.416431 GGCTTGTTGTTCATCTCCATGC 60.416 50.000 0.00 0.00 0.00 4.06
1774 1826 6.806739 GCTGCGGAAGTTTTGTTATTTTAGAT 59.193 34.615 0.00 0.00 0.00 1.98
1811 1863 6.595682 AGTGATGTATAGGACTTGGGATTTG 58.404 40.000 0.00 0.00 0.00 2.32
1814 1866 5.036117 TGTATAGGACTTGGGATTTGAGC 57.964 43.478 0.00 0.00 0.00 4.26
1960 2502 9.613428 TTAAGTTGTATTATGCTACATTCTGCT 57.387 29.630 0.00 0.00 31.94 4.24
1961 2503 8.511604 AAGTTGTATTATGCTACATTCTGCTT 57.488 30.769 0.00 0.00 31.94 3.91
1962 2504 9.613428 AAGTTGTATTATGCTACATTCTGCTTA 57.387 29.630 0.00 0.00 31.94 3.09
1963 2505 9.784531 AGTTGTATTATGCTACATTCTGCTTAT 57.215 29.630 0.00 0.00 31.94 1.73
1964 2506 9.817365 GTTGTATTATGCTACATTCTGCTTATG 57.183 33.333 0.00 0.00 31.94 1.90
1965 2507 9.777297 TTGTATTATGCTACATTCTGCTTATGA 57.223 29.630 0.00 0.00 31.94 2.15
1966 2508 9.428097 TGTATTATGCTACATTCTGCTTATGAG 57.572 33.333 0.00 0.00 0.00 2.90
1967 2509 9.429359 GTATTATGCTACATTCTGCTTATGAGT 57.571 33.333 0.00 0.00 0.00 3.41
1968 2510 7.719778 TTATGCTACATTCTGCTTATGAGTG 57.280 36.000 0.00 0.00 0.00 3.51
1969 2511 3.873361 TGCTACATTCTGCTTATGAGTGC 59.127 43.478 0.00 0.00 0.00 4.40
1970 2512 3.060003 GCTACATTCTGCTTATGAGTGCG 60.060 47.826 0.00 0.00 0.00 5.34
1971 2513 3.251479 ACATTCTGCTTATGAGTGCGA 57.749 42.857 0.00 0.00 0.00 5.10
1972 2514 3.599343 ACATTCTGCTTATGAGTGCGAA 58.401 40.909 0.00 0.00 0.00 4.70
1973 2515 3.620374 ACATTCTGCTTATGAGTGCGAAG 59.380 43.478 0.00 0.00 0.00 3.79
1974 2516 3.319137 TTCTGCTTATGAGTGCGAAGT 57.681 42.857 0.00 0.00 0.00 3.01
1975 2517 3.319137 TCTGCTTATGAGTGCGAAGTT 57.681 42.857 0.00 0.00 0.00 2.66
1976 2518 2.995939 TCTGCTTATGAGTGCGAAGTTG 59.004 45.455 0.00 0.00 0.00 3.16
1977 2519 2.995939 CTGCTTATGAGTGCGAAGTTGA 59.004 45.455 0.00 0.00 0.00 3.18
1978 2520 3.599343 TGCTTATGAGTGCGAAGTTGAT 58.401 40.909 0.00 0.00 0.00 2.57
1979 2521 3.371898 TGCTTATGAGTGCGAAGTTGATG 59.628 43.478 0.00 0.00 0.00 3.07
1980 2522 3.372206 GCTTATGAGTGCGAAGTTGATGT 59.628 43.478 0.00 0.00 0.00 3.06
1981 2523 4.142816 GCTTATGAGTGCGAAGTTGATGTT 60.143 41.667 0.00 0.00 0.00 2.71
1982 2524 5.617751 GCTTATGAGTGCGAAGTTGATGTTT 60.618 40.000 0.00 0.00 0.00 2.83
1983 2525 3.607422 TGAGTGCGAAGTTGATGTTTG 57.393 42.857 0.00 0.00 0.00 2.93
1984 2526 2.290367 TGAGTGCGAAGTTGATGTTTGG 59.710 45.455 0.00 0.00 0.00 3.28
1985 2527 2.290641 GAGTGCGAAGTTGATGTTTGGT 59.709 45.455 0.00 0.00 0.00 3.67
1986 2528 2.687935 AGTGCGAAGTTGATGTTTGGTT 59.312 40.909 0.00 0.00 0.00 3.67
1987 2529 3.880490 AGTGCGAAGTTGATGTTTGGTTA 59.120 39.130 0.00 0.00 0.00 2.85
2058 2600 5.702209 GGGTTTGCAGATCATGTTCATTTTT 59.298 36.000 6.55 0.00 0.00 1.94
2115 3843 4.499040 CGAAGTTGATGTTTGGTTTGACAC 59.501 41.667 0.00 0.00 0.00 3.67
2150 3878 8.498054 AGTATTTGGATGTTATCTGTGAACTG 57.502 34.615 0.00 0.00 0.00 3.16
2158 3991 7.119846 GGATGTTATCTGTGAACTGCTTAGTTT 59.880 37.037 0.00 0.00 31.35 2.66
2200 4036 1.981256 TGGAGTTCTTTCCACCTTGC 58.019 50.000 0.00 0.00 42.24 4.01
2227 4064 5.579047 TGGATGTTCCATGGAAACTGTTAT 58.421 37.500 28.64 15.07 42.67 1.89
2266 4103 8.068380 GCAAAGTTGGATTTATATCGACCTAAC 58.932 37.037 0.00 0.00 0.00 2.34
2370 4213 6.419980 TTCATGACAAAAAGGTGCAAAAAG 57.580 33.333 0.00 0.00 0.00 2.27
2616 4502 5.926542 TGAATCTTAGCTTCATACGTATGGC 59.073 40.000 30.07 25.74 34.50 4.40
2618 4504 2.060326 TAGCTTCATACGTATGGCGC 57.940 50.000 30.07 28.66 46.11 6.53
2619 4505 0.939577 AGCTTCATACGTATGGCGCG 60.940 55.000 30.07 18.28 46.11 6.86
2620 4506 1.487231 CTTCATACGTATGGCGCGC 59.513 57.895 30.07 25.94 46.11 6.86
2621 4507 1.212455 CTTCATACGTATGGCGCGCA 61.212 55.000 34.42 19.50 46.11 6.09
2622 4508 0.598942 TTCATACGTATGGCGCGCAT 60.599 50.000 34.42 24.69 46.11 4.73
2816 4728 7.822334 TGTAAGTGTACCATTATCCAGTTTCAG 59.178 37.037 0.00 0.00 0.00 3.02
2855 4774 9.658475 TTGTCATCGTTTGTTGTTATCTAAAAG 57.342 29.630 0.00 0.00 0.00 2.27
2924 4848 6.884832 TCAGTCATTAACTCCAAATATCGGT 58.115 36.000 0.00 0.00 35.45 4.69
3117 5043 3.956317 CTTGCTGTGTGCGCTGCA 61.956 61.111 9.73 12.11 46.63 4.41
3204 5145 5.185828 ACAATTTATCTGAAAGGTTCCTGGC 59.814 40.000 0.00 0.00 0.00 4.85
3452 5512 8.718656 AGTTATTAACCTAGAGCATTCCTTGAT 58.281 33.333 2.92 0.00 0.00 2.57
3763 5823 7.115947 GCAGTATTATCGGTTGTACAAGGTATC 59.884 40.741 8.98 0.00 0.00 2.24
3817 5878 3.252458 ACTTCCACATTTGGTAAAGACGC 59.748 43.478 6.39 0.00 44.35 5.19
3857 5921 1.583054 GATAATGTGCGGGTCACCTC 58.417 55.000 0.00 0.00 45.03 3.85
4290 6617 1.046204 GGCCCTACTACCGTGCTATT 58.954 55.000 0.00 0.00 0.00 1.73
4292 6619 1.411612 GCCCTACTACCGTGCTATTGT 59.588 52.381 0.00 0.00 0.00 2.71
4298 6625 5.747197 CCTACTACCGTGCTATTGTGTTAAG 59.253 44.000 0.00 0.00 0.00 1.85
4322 6649 8.870075 AGAAGTTGAAATAATTTGACTAGGCT 57.130 30.769 0.00 0.00 0.00 4.58
4323 6650 9.301897 AGAAGTTGAAATAATTTGACTAGGCTT 57.698 29.630 0.00 0.00 0.00 4.35
4324 6651 9.346725 GAAGTTGAAATAATTTGACTAGGCTTG 57.653 33.333 0.00 0.00 0.00 4.01
4325 6652 7.830739 AGTTGAAATAATTTGACTAGGCTTGG 58.169 34.615 0.00 0.00 0.00 3.61
4326 6653 7.669722 AGTTGAAATAATTTGACTAGGCTTGGA 59.330 33.333 0.00 0.00 0.00 3.53
4328 6655 8.415950 TGAAATAATTTGACTAGGCTTGGAAA 57.584 30.769 0.00 0.00 0.00 3.13
4329 6656 9.034800 TGAAATAATTTGACTAGGCTTGGAAAT 57.965 29.630 0.00 0.00 0.00 2.17
4330 6657 9.875691 GAAATAATTTGACTAGGCTTGGAAATT 57.124 29.630 17.85 17.85 0.00 1.82
4332 6659 9.657419 AATAATTTGACTAGGCTTGGAAATTTG 57.343 29.630 18.49 0.00 0.00 2.32
4333 6660 5.467035 TTTGACTAGGCTTGGAAATTTGG 57.533 39.130 0.00 0.00 0.00 3.28
4334 6661 3.430453 TGACTAGGCTTGGAAATTTGGG 58.570 45.455 0.00 0.00 0.00 4.12
4335 6662 2.760650 GACTAGGCTTGGAAATTTGGGG 59.239 50.000 0.00 0.00 0.00 4.96
4336 6663 1.482182 CTAGGCTTGGAAATTTGGGGC 59.518 52.381 0.00 0.00 0.00 5.80
4337 6664 0.473501 AGGCTTGGAAATTTGGGGCA 60.474 50.000 0.00 0.00 0.00 5.36
4338 6665 0.620030 GGCTTGGAAATTTGGGGCAT 59.380 50.000 0.00 0.00 0.00 4.40
4339 6666 1.679640 GGCTTGGAAATTTGGGGCATG 60.680 52.381 0.00 0.00 0.00 4.06
4340 6667 1.741528 CTTGGAAATTTGGGGCATGC 58.258 50.000 9.90 9.90 0.00 4.06
4342 6669 0.903942 TGGAAATTTGGGGCATGCTC 59.096 50.000 18.92 14.75 0.00 4.26
4343 6670 0.178767 GGAAATTTGGGGCATGCTCC 59.821 55.000 30.78 30.78 37.02 4.70
4345 6672 0.906775 AAATTTGGGGCATGCTCCTG 59.093 50.000 35.81 0.00 37.51 3.86
4346 6673 1.619807 AATTTGGGGCATGCTCCTGC 61.620 55.000 35.81 11.89 41.53 4.85
4347 6674 2.525284 ATTTGGGGCATGCTCCTGCT 62.525 55.000 35.81 17.84 41.95 4.24
4348 6675 3.650298 TTGGGGCATGCTCCTGCTC 62.650 63.158 35.81 11.09 42.14 4.26
4350 6677 4.891037 GGGCATGCTCCTGCTCCC 62.891 72.222 18.92 3.40 41.95 4.30
4351 6678 4.891037 GGCATGCTCCTGCTCCCC 62.891 72.222 18.92 0.00 41.95 4.81
4354 6681 3.806667 ATGCTCCTGCTCCCCTGC 61.807 66.667 0.00 0.00 40.48 4.85
4357 6684 3.795041 CTCCTGCTCCCCTGCCTG 61.795 72.222 0.00 0.00 0.00 4.85
4360 6687 4.106925 CTGCTCCCCTGCCTGGTC 62.107 72.222 0.00 0.00 0.00 4.02
4363 6690 2.765807 CTCCCCTGCCTGGTCGAT 60.766 66.667 0.00 0.00 0.00 3.59
4365 6692 2.190578 CCCCTGCCTGGTCGATTC 59.809 66.667 0.00 0.00 0.00 2.52
4366 6693 2.202932 CCCTGCCTGGTCGATTCG 60.203 66.667 0.00 0.00 0.00 3.34
4368 6695 2.892425 CTGCCTGGTCGATTCGGC 60.892 66.667 13.02 13.02 42.78 5.54
4411 6738 3.650950 CCCCTCCCCCACACACAG 61.651 72.222 0.00 0.00 0.00 3.66
4412 6739 4.351054 CCCTCCCCCACACACAGC 62.351 72.222 0.00 0.00 0.00 4.40
4413 6740 3.569210 CCTCCCCCACACACAGCA 61.569 66.667 0.00 0.00 0.00 4.41
4414 6741 2.281761 CTCCCCCACACACAGCAC 60.282 66.667 0.00 0.00 0.00 4.40
4415 6742 3.850098 CTCCCCCACACACAGCACC 62.850 68.421 0.00 0.00 0.00 5.01
4416 6743 4.974721 CCCCCACACACAGCACCC 62.975 72.222 0.00 0.00 0.00 4.61
4417 6744 3.889692 CCCCACACACAGCACCCT 61.890 66.667 0.00 0.00 0.00 4.34
4418 6745 2.281761 CCCACACACAGCACCCTC 60.282 66.667 0.00 0.00 0.00 4.30
4419 6746 2.510411 CCACACACAGCACCCTCA 59.490 61.111 0.00 0.00 0.00 3.86
4420 6747 1.893808 CCACACACAGCACCCTCAC 60.894 63.158 0.00 0.00 0.00 3.51
4421 6748 1.153188 CACACACAGCACCCTCACA 60.153 57.895 0.00 0.00 0.00 3.58
4422 6749 1.153168 ACACACAGCACCCTCACAC 60.153 57.895 0.00 0.00 0.00 3.82
4423 6750 1.146930 CACACAGCACCCTCACACT 59.853 57.895 0.00 0.00 0.00 3.55
4424 6751 1.146930 ACACAGCACCCTCACACTG 59.853 57.895 0.00 0.00 36.22 3.66
4425 6752 2.111878 ACAGCACCCTCACACTGC 59.888 61.111 0.00 0.00 33.35 4.40
4426 6753 2.111669 CAGCACCCTCACACTGCA 59.888 61.111 0.00 0.00 33.06 4.41
4427 6754 1.303074 CAGCACCCTCACACTGCAT 60.303 57.895 0.00 0.00 33.06 3.96
4472 7191 2.711542 CATTTCCTGTCCGCCTTAAGT 58.288 47.619 0.97 0.00 0.00 2.24
4485 7204 2.039879 GCCTTAAGTTCTCCCCAAGTCA 59.960 50.000 0.97 0.00 0.00 3.41
4519 7238 0.534412 CCACTGCTGATCTCTCCGTT 59.466 55.000 0.00 0.00 0.00 4.44
4528 7247 2.025793 TGATCTCTCCGTTGTCTCCTCT 60.026 50.000 0.00 0.00 0.00 3.69
4652 7372 0.712979 TCTCCACTCCCCTGATGACT 59.287 55.000 0.00 0.00 0.00 3.41
4771 7516 0.182061 ATCGAGGCCTGCATCATGTT 59.818 50.000 12.00 0.00 0.00 2.71
4928 7837 3.278574 TGTATCAGGTATGTGCAAAGGC 58.721 45.455 0.00 0.00 41.68 4.35
4930 7839 0.323360 TCAGGTATGTGCAAAGGCCC 60.323 55.000 0.00 0.00 40.13 5.80
4987 7898 4.433615 TCCAGATTCAGTCGCATCTTAAC 58.566 43.478 0.00 0.00 0.00 2.01
5633 8768 3.485877 GCTGACCGTGAATTCAAGTATGC 60.486 47.826 18.23 16.20 0.00 3.14
5645 8780 8.959548 TGAATTCAAGTATGCATACAAAGTCAT 58.040 29.630 32.69 16.61 35.74 3.06
5657 8792 8.518702 TGCATACAAAGTCATTTATGCTGTTTA 58.481 29.630 12.31 0.00 39.51 2.01
5707 9065 5.500234 TCATAAGTAGCCTGCTGTTTTGAT 58.500 37.500 0.97 0.00 0.00 2.57
5731 9089 9.831737 GATTATATGTCCAATATGTTTGTGCTC 57.168 33.333 0.00 0.00 0.00 4.26
5825 9183 5.010314 ACATTCTGACTAGTAACACGAACCA 59.990 40.000 0.00 0.00 0.00 3.67
5980 9340 3.503363 TGCTCCAGTAACTTGCATTTGAG 59.497 43.478 0.00 0.00 0.00 3.02
6064 9424 1.895131 TGGCCTTTTCTCTGGATTTGC 59.105 47.619 3.32 0.00 0.00 3.68
6242 9603 3.056322 GCCAGAAGCCATGAATTTTCTGT 60.056 43.478 18.44 0.00 43.00 3.41
6306 9672 6.020440 ACGTAAACAAATCGTACATATGACGG 60.020 38.462 20.15 11.24 40.70 4.79
6315 9681 4.156373 TCGTACATATGACGGTCTGTTCAA 59.844 41.667 20.15 3.38 40.70 2.69
6316 9682 5.041287 CGTACATATGACGGTCTGTTCAAT 58.959 41.667 10.38 0.00 36.66 2.57
6353 9725 7.872138 TCATACTACTTCCTCCATTCCAAAAT 58.128 34.615 0.00 0.00 0.00 1.82
6365 9737 5.765677 TCCATTCCAAAATAAGTGTCGTGAA 59.234 36.000 0.00 0.00 0.00 3.18
6366 9738 5.856455 CCATTCCAAAATAAGTGTCGTGAAC 59.144 40.000 0.00 0.00 0.00 3.18
6367 9739 4.718858 TCCAAAATAAGTGTCGTGAACG 57.281 40.909 0.00 0.00 41.45 3.95
6368 9740 3.495377 TCCAAAATAAGTGTCGTGAACGG 59.505 43.478 2.59 0.00 40.29 4.44
6370 9742 4.451557 CAAAATAAGTGTCGTGAACGGAC 58.548 43.478 2.59 0.83 40.29 4.79
6371 9743 3.374220 AATAAGTGTCGTGAACGGACA 57.626 42.857 2.59 3.85 40.29 4.02
6384 9766 2.096596 CGGACAGAGGGAGTACGTC 58.903 63.158 0.00 0.00 38.48 4.34
6386 9768 0.810016 GGACAGAGGGAGTACGTCAC 59.190 60.000 0.00 0.00 36.45 3.67
6411 9793 8.175069 ACAACATATGAATAAATGACGTGTCAC 58.825 33.333 10.38 0.00 43.11 3.67
6413 9795 6.754675 ACATATGAATAAATGACGTGTCACGA 59.245 34.615 30.95 10.86 46.05 4.35
6414 9796 5.702622 ATGAATAAATGACGTGTCACGAG 57.297 39.130 30.95 4.27 46.05 4.18
6415 9797 4.552355 TGAATAAATGACGTGTCACGAGT 58.448 39.130 30.95 10.44 46.05 4.18
6416 9798 4.384547 TGAATAAATGACGTGTCACGAGTG 59.615 41.667 30.95 3.11 46.05 3.51
6417 9799 2.502213 AAATGACGTGTCACGAGTGA 57.498 45.000 30.95 11.83 46.05 3.41
6418 9800 2.724977 AATGACGTGTCACGAGTGAT 57.275 45.000 30.95 8.83 46.05 3.06
6419 9801 2.724977 ATGACGTGTCACGAGTGATT 57.275 45.000 30.95 8.04 46.05 2.57
6420 9802 2.046283 TGACGTGTCACGAGTGATTC 57.954 50.000 30.95 16.91 46.05 2.52
6421 9803 1.607148 TGACGTGTCACGAGTGATTCT 59.393 47.619 30.95 6.47 46.05 2.40
6422 9804 2.243407 GACGTGTCACGAGTGATTCTC 58.757 52.381 30.95 11.99 46.05 2.87
6423 9805 1.607148 ACGTGTCACGAGTGATTCTCA 59.393 47.619 30.95 0.00 46.05 3.27
6424 9806 2.034179 ACGTGTCACGAGTGATTCTCAA 59.966 45.455 30.95 0.00 46.05 3.02
6425 9807 3.049912 CGTGTCACGAGTGATTCTCAAA 58.950 45.455 20.75 0.00 46.05 2.69
6426 9808 3.489416 CGTGTCACGAGTGATTCTCAAAA 59.511 43.478 20.75 0.00 46.05 2.44
6427 9809 4.150627 CGTGTCACGAGTGATTCTCAAAAT 59.849 41.667 20.75 0.00 46.05 1.82
6428 9810 5.344933 CGTGTCACGAGTGATTCTCAAAATA 59.655 40.000 20.75 0.00 46.05 1.40
6429 9811 6.128929 CGTGTCACGAGTGATTCTCAAAATAA 60.129 38.462 20.75 0.00 46.05 1.40
6430 9812 7.411912 CGTGTCACGAGTGATTCTCAAAATAAT 60.412 37.037 20.75 0.00 46.05 1.28
6431 9813 8.869897 GTGTCACGAGTGATTCTCAAAATAATA 58.130 33.333 9.29 0.00 42.88 0.98
6432 9814 9.430623 TGTCACGAGTGATTCTCAAAATAATAA 57.569 29.630 9.29 0.00 42.88 1.40
6433 9815 9.690434 GTCACGAGTGATTCTCAAAATAATAAC 57.310 33.333 9.29 0.00 42.88 1.89
6434 9816 8.879759 TCACGAGTGATTCTCAAAATAATAACC 58.120 33.333 1.24 0.00 42.88 2.85
6435 9817 8.664798 CACGAGTGATTCTCAAAATAATAACCA 58.335 33.333 0.00 0.00 42.88 3.67
6436 9818 9.226606 ACGAGTGATTCTCAAAATAATAACCAA 57.773 29.630 0.00 0.00 42.88 3.67
6437 9819 9.708222 CGAGTGATTCTCAAAATAATAACCAAG 57.292 33.333 0.00 0.00 42.88 3.61
6474 9856 9.865321 AAGAAATATCACCAAAATGTCAAGATG 57.135 29.630 0.00 0.00 0.00 2.90
6475 9857 9.246670 AGAAATATCACCAAAATGTCAAGATGA 57.753 29.630 0.00 0.00 0.00 2.92
6481 9863 8.450578 TCACCAAAATGTCAAGATGATATACC 57.549 34.615 0.00 0.00 27.79 2.73
6482 9864 7.226523 TCACCAAAATGTCAAGATGATATACCG 59.773 37.037 0.00 0.00 27.79 4.02
6483 9865 6.486657 ACCAAAATGTCAAGATGATATACCGG 59.513 38.462 0.00 0.00 27.79 5.28
6484 9866 6.373779 CAAAATGTCAAGATGATATACCGGC 58.626 40.000 0.00 0.00 27.79 6.13
6485 9867 3.297830 TGTCAAGATGATATACCGGCG 57.702 47.619 0.00 0.00 0.00 6.46
6486 9868 1.993370 GTCAAGATGATATACCGGCGC 59.007 52.381 0.00 0.00 0.00 6.53
6487 9869 1.616374 TCAAGATGATATACCGGCGCA 59.384 47.619 10.83 0.00 0.00 6.09
6488 9870 1.995484 CAAGATGATATACCGGCGCAG 59.005 52.381 10.83 4.65 0.00 5.18
6489 9871 1.257743 AGATGATATACCGGCGCAGT 58.742 50.000 10.83 8.88 0.00 4.40
6490 9872 1.202582 AGATGATATACCGGCGCAGTC 59.797 52.381 10.83 0.00 0.00 3.51
6491 9873 1.202582 GATGATATACCGGCGCAGTCT 59.797 52.381 10.83 0.88 0.00 3.24
6492 9874 0.596577 TGATATACCGGCGCAGTCTC 59.403 55.000 10.83 5.04 0.00 3.36
6493 9875 0.882474 GATATACCGGCGCAGTCTCT 59.118 55.000 10.83 0.00 0.00 3.10
6494 9876 2.082231 GATATACCGGCGCAGTCTCTA 58.918 52.381 10.83 0.00 0.00 2.43
6495 9877 1.520494 TATACCGGCGCAGTCTCTAG 58.480 55.000 10.83 0.00 0.00 2.43
6496 9878 0.179026 ATACCGGCGCAGTCTCTAGA 60.179 55.000 10.83 0.00 0.00 2.43
6497 9879 0.393402 TACCGGCGCAGTCTCTAGAA 60.393 55.000 10.83 0.00 0.00 2.10
6498 9880 1.064946 CCGGCGCAGTCTCTAGAAG 59.935 63.158 10.83 0.00 0.00 2.85
6499 9881 1.064946 CGGCGCAGTCTCTAGAAGG 59.935 63.158 10.83 0.00 0.00 3.46
6500 9882 1.658686 CGGCGCAGTCTCTAGAAGGT 61.659 60.000 10.83 0.00 0.00 3.50
6501 9883 0.179124 GGCGCAGTCTCTAGAAGGTG 60.179 60.000 10.83 0.00 0.00 4.00
6502 9884 0.804156 GCGCAGTCTCTAGAAGGTGC 60.804 60.000 0.30 8.99 34.03 5.01
6503 9885 0.814457 CGCAGTCTCTAGAAGGTGCT 59.186 55.000 14.60 0.00 34.77 4.40
6504 9886 1.202245 CGCAGTCTCTAGAAGGTGCTC 60.202 57.143 14.60 0.00 34.77 4.26
6505 9887 1.821753 GCAGTCTCTAGAAGGTGCTCA 59.178 52.381 11.01 0.00 34.36 4.26
6506 9888 2.430332 GCAGTCTCTAGAAGGTGCTCAT 59.570 50.000 11.01 0.00 34.36 2.90
6507 9889 3.634448 GCAGTCTCTAGAAGGTGCTCATA 59.366 47.826 11.01 0.00 34.36 2.15
6508 9890 4.261572 GCAGTCTCTAGAAGGTGCTCATAG 60.262 50.000 11.01 0.00 34.36 2.23
6509 9891 4.278170 CAGTCTCTAGAAGGTGCTCATAGG 59.722 50.000 0.00 0.00 0.00 2.57
6510 9892 3.572255 GTCTCTAGAAGGTGCTCATAGGG 59.428 52.174 0.00 0.00 0.00 3.53
6511 9893 3.463704 TCTCTAGAAGGTGCTCATAGGGA 59.536 47.826 0.00 0.00 0.00 4.20
6512 9894 4.107149 TCTCTAGAAGGTGCTCATAGGGAT 59.893 45.833 0.00 0.00 0.00 3.85
6513 9895 5.313506 TCTCTAGAAGGTGCTCATAGGGATA 59.686 44.000 0.00 0.00 0.00 2.59
6514 9896 5.575157 TCTAGAAGGTGCTCATAGGGATAG 58.425 45.833 0.00 0.00 0.00 2.08
6515 9897 3.515562 AGAAGGTGCTCATAGGGATAGG 58.484 50.000 0.00 0.00 0.00 2.57
6516 9898 2.334006 AGGTGCTCATAGGGATAGGG 57.666 55.000 0.00 0.00 0.00 3.53
6517 9899 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
6518 9900 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
6519 9901 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
6520 9902 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
6521 9903 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
6522 9904 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
6523 9905 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
6524 9906 1.416401 CATAGGGATAGGGTGTGCGTT 59.584 52.381 0.00 0.00 0.00 4.84
6525 9907 1.117150 TAGGGATAGGGTGTGCGTTC 58.883 55.000 0.00 0.00 0.00 3.95
6526 9908 0.907704 AGGGATAGGGTGTGCGTTCA 60.908 55.000 0.00 0.00 0.00 3.18
6527 9909 0.180406 GGGATAGGGTGTGCGTTCAT 59.820 55.000 0.00 0.00 0.00 2.57
6528 9910 1.414919 GGGATAGGGTGTGCGTTCATA 59.585 52.381 0.00 0.00 0.00 2.15
6529 9911 2.548067 GGGATAGGGTGTGCGTTCATAG 60.548 54.545 0.00 0.00 0.00 2.23
6530 9912 2.548067 GGATAGGGTGTGCGTTCATAGG 60.548 54.545 0.00 0.00 0.00 2.57
6531 9913 0.828022 TAGGGTGTGCGTTCATAGGG 59.172 55.000 0.00 0.00 0.00 3.53
6532 9914 1.451387 GGGTGTGCGTTCATAGGGG 60.451 63.158 0.00 0.00 0.00 4.79
6533 9915 1.298667 GGTGTGCGTTCATAGGGGT 59.701 57.895 0.00 0.00 0.00 4.95
6534 9916 1.024579 GGTGTGCGTTCATAGGGGTG 61.025 60.000 0.00 0.00 0.00 4.61
6535 9917 1.024579 GTGTGCGTTCATAGGGGTGG 61.025 60.000 0.00 0.00 0.00 4.61
6536 9918 1.195442 TGTGCGTTCATAGGGGTGGA 61.195 55.000 0.00 0.00 0.00 4.02
6537 9919 0.180406 GTGCGTTCATAGGGGTGGAT 59.820 55.000 0.00 0.00 0.00 3.41
6538 9920 0.180171 TGCGTTCATAGGGGTGGATG 59.820 55.000 0.00 0.00 0.00 3.51
6539 9921 0.180406 GCGTTCATAGGGGTGGATGT 59.820 55.000 0.00 0.00 0.00 3.06
6540 9922 1.414919 GCGTTCATAGGGGTGGATGTA 59.585 52.381 0.00 0.00 0.00 2.29
6541 9923 2.038557 GCGTTCATAGGGGTGGATGTAT 59.961 50.000 0.00 0.00 0.00 2.29
6542 9924 3.664107 CGTTCATAGGGGTGGATGTATG 58.336 50.000 0.00 0.00 0.00 2.39
6543 9925 3.412386 GTTCATAGGGGTGGATGTATGC 58.588 50.000 0.00 0.00 0.00 3.14
6544 9926 1.985159 TCATAGGGGTGGATGTATGCC 59.015 52.381 0.00 0.00 0.00 4.40
6545 9927 1.004745 CATAGGGGTGGATGTATGCCC 59.995 57.143 0.00 0.00 40.35 5.36
6546 9928 1.125093 TAGGGGTGGATGTATGCCCG 61.125 60.000 0.00 0.00 41.95 6.13
6547 9929 2.752807 GGGGTGGATGTATGCCCGT 61.753 63.158 0.00 0.00 41.95 5.28
6548 9930 1.412453 GGGGTGGATGTATGCCCGTA 61.412 60.000 0.00 0.00 41.95 4.02
6549 9931 0.690762 GGGTGGATGTATGCCCGTAT 59.309 55.000 0.00 0.00 0.00 3.06
6550 9932 1.903860 GGGTGGATGTATGCCCGTATA 59.096 52.381 0.00 0.00 0.00 1.47
6551 9933 2.504175 GGGTGGATGTATGCCCGTATAT 59.496 50.000 0.00 0.00 0.00 0.86
6552 9934 3.707611 GGGTGGATGTATGCCCGTATATA 59.292 47.826 0.00 0.00 0.00 0.86
6553 9935 4.347000 GGGTGGATGTATGCCCGTATATAT 59.653 45.833 0.00 0.00 0.00 0.86
6554 9936 5.541101 GGGTGGATGTATGCCCGTATATATA 59.459 44.000 0.00 0.00 0.00 0.86
6555 9937 6.453092 GGTGGATGTATGCCCGTATATATAC 58.547 44.000 12.18 12.18 0.00 1.47
6570 9952 7.249609 GTATATATACGAGCGTTTGTGTCTG 57.750 40.000 7.12 0.00 0.00 3.51
6571 9953 2.433868 ATACGAGCGTTTGTGTCTGT 57.566 45.000 1.86 0.00 0.00 3.41
6572 9954 3.564235 ATACGAGCGTTTGTGTCTGTA 57.436 42.857 1.86 0.00 0.00 2.74
6573 9955 1.484356 ACGAGCGTTTGTGTCTGTAC 58.516 50.000 0.00 0.00 0.00 2.90
6574 9956 1.066605 ACGAGCGTTTGTGTCTGTACT 59.933 47.619 0.00 0.00 0.00 2.73
6575 9957 1.452025 CGAGCGTTTGTGTCTGTACTG 59.548 52.381 0.00 0.00 0.00 2.74
6576 9958 2.739292 GAGCGTTTGTGTCTGTACTGA 58.261 47.619 0.00 0.00 0.00 3.41
6577 9959 3.318017 GAGCGTTTGTGTCTGTACTGAT 58.682 45.455 5.69 0.00 0.00 2.90
6578 9960 3.059884 AGCGTTTGTGTCTGTACTGATG 58.940 45.455 5.69 0.00 0.00 3.07
6579 9961 2.800544 GCGTTTGTGTCTGTACTGATGT 59.199 45.455 5.69 0.00 0.00 3.06
6580 9962 3.247648 GCGTTTGTGTCTGTACTGATGTT 59.752 43.478 5.69 0.00 0.00 2.71
6581 9963 4.608445 GCGTTTGTGTCTGTACTGATGTTC 60.608 45.833 5.69 0.00 0.00 3.18
6582 9964 4.375005 CGTTTGTGTCTGTACTGATGTTCG 60.375 45.833 5.69 3.91 0.00 3.95
6583 9965 4.577834 TTGTGTCTGTACTGATGTTCGA 57.422 40.909 5.69 0.00 0.00 3.71
6584 9966 4.577834 TGTGTCTGTACTGATGTTCGAA 57.422 40.909 5.69 0.00 0.00 3.71
6585 9967 4.939271 TGTGTCTGTACTGATGTTCGAAA 58.061 39.130 0.00 0.00 0.00 3.46
6586 9968 5.353111 TGTGTCTGTACTGATGTTCGAAAA 58.647 37.500 0.00 0.00 0.00 2.29
6587 9969 5.813157 TGTGTCTGTACTGATGTTCGAAAAA 59.187 36.000 0.00 0.00 0.00 1.94
6620 10002 8.782144 TCACTAAAATTGGAAATTCATTTTGGC 58.218 29.630 11.79 0.00 0.00 4.52
6621 10003 8.566260 CACTAAAATTGGAAATTCATTTTGGCA 58.434 29.630 11.79 0.00 0.00 4.92
6622 10004 8.567104 ACTAAAATTGGAAATTCATTTTGGCAC 58.433 29.630 11.79 0.00 0.00 5.01
6623 10005 6.956202 AAATTGGAAATTCATTTTGGCACA 57.044 29.167 0.00 0.00 0.00 4.57
6624 10006 7.527568 AAATTGGAAATTCATTTTGGCACAT 57.472 28.000 0.00 0.00 39.30 3.21
6625 10007 5.943706 TTGGAAATTCATTTTGGCACATG 57.056 34.783 0.00 0.00 39.30 3.21
6626 10008 4.325119 TGGAAATTCATTTTGGCACATGG 58.675 39.130 0.00 0.00 39.30 3.66
6627 10009 3.690628 GGAAATTCATTTTGGCACATGGG 59.309 43.478 0.00 0.00 39.30 4.00
6628 10010 4.565236 GGAAATTCATTTTGGCACATGGGA 60.565 41.667 0.00 0.00 39.30 4.37
6629 10011 4.637387 AATTCATTTTGGCACATGGGAA 57.363 36.364 0.00 0.00 39.30 3.97
6630 10012 3.399440 TTCATTTTGGCACATGGGAAC 57.601 42.857 0.00 0.00 39.30 3.62
6642 10024 3.806941 TGGGAACATATGCTCCTGC 57.193 52.632 21.61 9.20 35.73 4.85
6644 10026 0.886490 GGGAACATATGCTCCTGCCG 60.886 60.000 21.61 0.00 38.71 5.69
6646 10028 1.221414 GAACATATGCTCCTGCCGTC 58.779 55.000 1.58 0.00 38.71 4.79
6650 10032 0.032678 ATATGCTCCTGCCGTCGAAG 59.967 55.000 0.00 0.00 38.71 3.79
6653 10035 2.095252 GCTCCTGCCGTCGAAGAAC 61.095 63.158 0.00 0.00 39.69 3.01
6696 10079 9.833182 AAAAATTTCAAACACAAATTTTACGCT 57.167 22.222 13.49 0.22 45.92 5.07
6720 10103 5.997129 TCACATCTCAACATTGTATGTGTGT 59.003 36.000 25.03 9.49 44.07 3.72
6722 10105 7.823799 TCACATCTCAACATTGTATGTGTGTAT 59.176 33.333 25.03 2.24 44.07 2.29
6724 10107 7.607607 ACATCTCAACATTGTATGTGTGTATGT 59.392 33.333 11.80 3.91 44.07 2.29
6741 10124 8.159709 GTGTGTATGTCAAGTTTTGTGAAAAAC 58.840 33.333 6.05 6.05 41.62 2.43
6855 10239 3.256136 ACAAAAGTTGTCGGTTTTCCACA 59.744 39.130 0.00 0.00 40.56 4.17
6858 10242 4.522722 AAGTTGTCGGTTTTCCACAAAA 57.477 36.364 0.00 0.00 40.11 2.44
6885 10269 5.348724 AGTTTGTATGCACGTAGAATGTCAG 59.651 40.000 0.00 0.00 0.00 3.51
6886 10270 4.712122 TGTATGCACGTAGAATGTCAGA 57.288 40.909 0.00 0.00 0.00 3.27
6887 10271 5.262588 TGTATGCACGTAGAATGTCAGAT 57.737 39.130 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.469423 GCTACTTCGCTTCTTACGGCT 60.469 52.381 0.00 0.00 0.00 5.52
68 69 8.652290 ACATTCCTCTCTCTAACTGTAAAAACT 58.348 33.333 0.00 0.00 0.00 2.66
69 70 8.834749 ACATTCCTCTCTCTAACTGTAAAAAC 57.165 34.615 0.00 0.00 0.00 2.43
115 117 1.001633 GTCGGCTAAGGGTGTTCAAGA 59.998 52.381 0.00 0.00 0.00 3.02
116 118 1.439679 GTCGGCTAAGGGTGTTCAAG 58.560 55.000 0.00 0.00 0.00 3.02
148 150 0.391927 TTCGCAAATACCACCCTCCG 60.392 55.000 0.00 0.00 0.00 4.63
197 199 2.808906 AAAATGCCACCTCTCCTACC 57.191 50.000 0.00 0.00 0.00 3.18
236 240 8.097662 AGGATCAAACCACAACAGTTTTAAAAA 58.902 29.630 1.31 0.00 35.28 1.94
240 244 5.654650 ACAGGATCAAACCACAACAGTTTTA 59.345 36.000 0.00 0.00 35.28 1.52
249 253 5.654650 AGTTGTAAAACAGGATCAAACCACA 59.345 36.000 0.00 0.00 0.00 4.17
261 265 6.084326 ACATGCCCTTAAGTTGTAAAACAG 57.916 37.500 0.97 0.00 0.00 3.16
262 266 6.546403 TGTACATGCCCTTAAGTTGTAAAACA 59.454 34.615 0.97 0.00 0.00 2.83
303 307 4.481368 TCATTTATCCTACGTGGCACTT 57.519 40.909 16.72 9.21 35.26 3.16
409 413 2.746269 TCCTAAAAACGTGGTGAGACG 58.254 47.619 0.00 0.00 45.09 4.18
443 447 9.981460 AATGGGTCATTTCTTAGTCTTATCTTT 57.019 29.630 0.00 0.00 28.76 2.52
481 485 8.791327 TGCATGTAATCTAGAGATGACAAAAA 57.209 30.769 12.75 0.78 46.07 1.94
482 486 8.791327 TTGCATGTAATCTAGAGATGACAAAA 57.209 30.769 12.75 6.48 46.07 2.44
483 487 8.791327 TTTGCATGTAATCTAGAGATGACAAA 57.209 30.769 12.75 9.31 46.07 2.83
484 488 8.668353 GTTTTGCATGTAATCTAGAGATGACAA 58.332 33.333 12.75 4.71 46.07 3.18
485 489 8.043113 AGTTTTGCATGTAATCTAGAGATGACA 58.957 33.333 11.40 11.40 46.76 3.58
486 490 8.430801 AGTTTTGCATGTAATCTAGAGATGAC 57.569 34.615 0.00 0.53 36.61 3.06
521 525 9.672673 GGCATGTATAATGGTTGATAAGATAGT 57.327 33.333 0.00 0.00 0.00 2.12
522 526 9.113838 GGGCATGTATAATGGTTGATAAGATAG 57.886 37.037 0.00 0.00 0.00 2.08
523 527 8.835734 AGGGCATGTATAATGGTTGATAAGATA 58.164 33.333 0.00 0.00 0.00 1.98
524 528 7.702785 AGGGCATGTATAATGGTTGATAAGAT 58.297 34.615 0.00 0.00 0.00 2.40
525 529 7.090319 AGGGCATGTATAATGGTTGATAAGA 57.910 36.000 0.00 0.00 0.00 2.10
526 530 8.862325 TTAGGGCATGTATAATGGTTGATAAG 57.138 34.615 0.00 0.00 0.00 1.73
527 531 7.888021 CCTTAGGGCATGTATAATGGTTGATAA 59.112 37.037 0.00 0.00 0.00 1.75
528 532 7.402054 CCTTAGGGCATGTATAATGGTTGATA 58.598 38.462 0.00 0.00 0.00 2.15
529 533 6.248433 CCTTAGGGCATGTATAATGGTTGAT 58.752 40.000 0.00 0.00 0.00 2.57
530 534 5.457487 CCCTTAGGGCATGTATAATGGTTGA 60.457 44.000 3.52 0.00 35.35 3.18
531 535 4.766891 CCCTTAGGGCATGTATAATGGTTG 59.233 45.833 3.52 0.00 35.35 3.77
532 536 4.998051 CCCTTAGGGCATGTATAATGGTT 58.002 43.478 3.52 0.00 35.35 3.67
533 537 4.657814 CCCTTAGGGCATGTATAATGGT 57.342 45.455 3.52 0.00 35.35 3.55
546 550 4.986615 GTACCATTGTACATGCCCTTAGGG 60.987 50.000 14.11 14.11 45.50 3.53
547 551 3.297134 ACCATTGTACATGCCCTTAGG 57.703 47.619 0.00 0.00 0.00 2.69
558 562 8.601476 GCAACACTTAAGATAGTACCATTGTAC 58.399 37.037 10.09 0.00 46.36 2.90
559 563 7.767198 GGCAACACTTAAGATAGTACCATTGTA 59.233 37.037 10.09 0.00 0.00 2.41
560 564 6.598064 GGCAACACTTAAGATAGTACCATTGT 59.402 38.462 10.09 0.00 0.00 2.71
561 565 6.597672 TGGCAACACTTAAGATAGTACCATTG 59.402 38.462 10.09 0.00 46.17 2.82
562 566 6.717289 TGGCAACACTTAAGATAGTACCATT 58.283 36.000 10.09 0.00 46.17 3.16
563 567 6.308015 TGGCAACACTTAAGATAGTACCAT 57.692 37.500 10.09 0.00 46.17 3.55
564 568 5.748670 TGGCAACACTTAAGATAGTACCA 57.251 39.130 10.09 12.12 46.17 3.25
580 584 4.393680 TCAACAATTATCCTACGTGGCAAC 59.606 41.667 0.00 0.00 35.26 4.17
581 585 4.580868 TCAACAATTATCCTACGTGGCAA 58.419 39.130 0.00 0.00 35.26 4.52
588 592 5.130477 TCCTCCACCTCAACAATTATCCTAC 59.870 44.000 0.00 0.00 0.00 3.18
591 595 4.164221 TCTCCTCCACCTCAACAATTATCC 59.836 45.833 0.00 0.00 0.00 2.59
600 604 3.370104 GATTCTCTCTCCTCCACCTCAA 58.630 50.000 0.00 0.00 0.00 3.02
609 613 6.409120 GCCTTTTCTTATGGATTCTCTCTCCT 60.409 42.308 0.00 0.00 33.69 3.69
660 664 4.811557 GTGACACATATTGGGCTAAGAGAC 59.188 45.833 0.00 0.00 0.00 3.36
709 713 6.844388 TGGGTTATCTCTCAGCCTTATCTAAA 59.156 38.462 0.00 0.00 0.00 1.85
796 800 2.446435 AGGGCATGTACAATGGTTGAC 58.554 47.619 0.00 0.00 0.00 3.18
828 833 1.659794 GTGGCAAGCGAACCATTGT 59.340 52.632 0.00 0.00 38.46 2.71
891 897 6.153000 AGGACCTAAACTGTAGATACACACAG 59.847 42.308 0.00 0.36 46.15 3.66
892 898 6.014647 AGGACCTAAACTGTAGATACACACA 58.985 40.000 0.00 0.00 31.93 3.72
1043 1049 3.051581 AGAGAGAGGAGAGAGAGAGCAT 58.948 50.000 0.00 0.00 0.00 3.79
1055 1061 1.576368 AAGGCCGAGGAGAGAGAGGA 61.576 60.000 0.00 0.00 0.00 3.71
1163 1173 2.202864 GCTTCTGGGAGAGCTCGC 60.203 66.667 9.23 9.23 42.16 5.03
1269 1284 1.823295 GCTGATCTGTAAGGGCCGA 59.177 57.895 0.00 0.00 0.00 5.54
1378 1393 1.671379 GACGAAGCAGGAACACCCC 60.671 63.158 0.00 0.00 34.66 4.95
1433 1448 1.843368 TCCCGATGTCTCGTTAACCT 58.157 50.000 0.00 0.00 43.49 3.50
1550 1565 2.551459 GCCAAGCACATTAGCTATCCAG 59.449 50.000 0.00 0.00 45.89 3.86
1595 1627 4.211920 TGAACGAAATCAGGGGAAAAGTT 58.788 39.130 0.00 0.00 0.00 2.66
1774 1826 9.475620 TCCTATACATCACTCTCTCAAACTTAA 57.524 33.333 0.00 0.00 0.00 1.85
1811 1863 4.679197 CGTAGACATCAATAAGCTCAGCTC 59.321 45.833 0.00 0.00 38.25 4.09
1814 1866 6.499172 TCTTCGTAGACATCAATAAGCTCAG 58.501 40.000 0.00 0.00 34.32 3.35
1880 2421 0.237498 GAAACCAGTAAGGCGTGTGC 59.763 55.000 0.00 0.00 43.14 4.57
1959 2501 5.536554 AACATCAACTTCGCACTCATAAG 57.463 39.130 0.00 0.00 0.00 1.73
1960 2502 5.334802 CCAAACATCAACTTCGCACTCATAA 60.335 40.000 0.00 0.00 0.00 1.90
1961 2503 4.154015 CCAAACATCAACTTCGCACTCATA 59.846 41.667 0.00 0.00 0.00 2.15
1962 2504 3.058016 CCAAACATCAACTTCGCACTCAT 60.058 43.478 0.00 0.00 0.00 2.90
1963 2505 2.290367 CCAAACATCAACTTCGCACTCA 59.710 45.455 0.00 0.00 0.00 3.41
1964 2506 2.290641 ACCAAACATCAACTTCGCACTC 59.709 45.455 0.00 0.00 0.00 3.51
1965 2507 2.297701 ACCAAACATCAACTTCGCACT 58.702 42.857 0.00 0.00 0.00 4.40
1966 2508 2.774439 ACCAAACATCAACTTCGCAC 57.226 45.000 0.00 0.00 0.00 5.34
1967 2509 3.628032 TGTAACCAAACATCAACTTCGCA 59.372 39.130 0.00 0.00 0.00 5.10
1968 2510 4.217754 TGTAACCAAACATCAACTTCGC 57.782 40.909 0.00 0.00 0.00 4.70
1969 2511 5.116983 GCATTGTAACCAAACATCAACTTCG 59.883 40.000 0.00 0.00 33.44 3.79
1970 2512 5.982516 TGCATTGTAACCAAACATCAACTTC 59.017 36.000 0.00 0.00 33.44 3.01
1971 2513 5.911752 TGCATTGTAACCAAACATCAACTT 58.088 33.333 0.00 0.00 33.44 2.66
1972 2514 5.528043 TGCATTGTAACCAAACATCAACT 57.472 34.783 0.00 0.00 33.44 3.16
1973 2515 6.783892 AATGCATTGTAACCAAACATCAAC 57.216 33.333 12.09 0.00 33.01 3.18
1974 2516 6.988580 TCAAATGCATTGTAACCAAACATCAA 59.011 30.769 13.82 0.00 40.11 2.57
1975 2517 6.519382 TCAAATGCATTGTAACCAAACATCA 58.481 32.000 13.82 0.00 40.11 3.07
1976 2518 7.599630 ATCAAATGCATTGTAACCAAACATC 57.400 32.000 13.82 0.00 40.11 3.06
1977 2519 8.530311 TCTATCAAATGCATTGTAACCAAACAT 58.470 29.630 13.82 0.00 40.11 2.71
1978 2520 7.812191 GTCTATCAAATGCATTGTAACCAAACA 59.188 33.333 13.82 0.00 40.11 2.83
1979 2521 7.812191 TGTCTATCAAATGCATTGTAACCAAAC 59.188 33.333 13.82 6.01 40.11 2.93
1980 2522 7.812191 GTGTCTATCAAATGCATTGTAACCAAA 59.188 33.333 13.82 0.00 40.11 3.28
1981 2523 7.040132 TGTGTCTATCAAATGCATTGTAACCAA 60.040 33.333 13.82 0.00 40.11 3.67
1982 2524 6.432472 TGTGTCTATCAAATGCATTGTAACCA 59.568 34.615 13.82 1.82 40.11 3.67
1983 2525 6.747280 GTGTGTCTATCAAATGCATTGTAACC 59.253 38.462 13.82 0.00 40.11 2.85
1984 2526 6.465781 CGTGTGTCTATCAAATGCATTGTAAC 59.534 38.462 13.82 6.68 40.11 2.50
1985 2527 6.541969 CGTGTGTCTATCAAATGCATTGTAA 58.458 36.000 13.82 1.75 40.11 2.41
1986 2528 5.447144 GCGTGTGTCTATCAAATGCATTGTA 60.447 40.000 13.82 4.47 43.66 2.41
1987 2529 4.672542 GCGTGTGTCTATCAAATGCATTGT 60.673 41.667 13.82 5.13 43.66 2.71
2058 2600 9.613428 AAGCAGAATGTAGCATAATACAACTTA 57.387 29.630 0.00 0.00 39.04 2.24
2150 3878 5.106157 ACAATGGACATGCTACAAACTAAGC 60.106 40.000 0.00 0.00 39.25 3.09
2158 3991 6.294453 CCAAACTTTACAATGGACATGCTACA 60.294 38.462 0.00 0.00 34.82 2.74
2227 4064 2.526304 ACTTTGCAGAGAACGTGCTA 57.474 45.000 11.85 0.00 41.78 3.49
2296 4133 4.038763 CGGTGAATAGACATAAGGCCAGTA 59.961 45.833 5.01 0.00 0.00 2.74
2337 4177 8.670135 CACCTTTTTGTCATGAATATACGGTTA 58.330 33.333 0.00 0.00 0.00 2.85
2370 4213 9.937175 GGAAAAGAAGATACTAATAATGTGCAC 57.063 33.333 10.75 10.75 0.00 4.57
2597 4483 2.408704 GCGCCATACGTATGAAGCTAAG 59.591 50.000 32.19 16.84 46.11 2.18
2816 4728 7.042658 ACAAACGATGACAAGTAGAGAAGAAAC 60.043 37.037 0.00 0.00 0.00 2.78
3117 5043 4.039124 GTGATGGAAGTGGGAAAACATGTT 59.961 41.667 4.92 4.92 0.00 2.71
3204 5145 2.951642 TGAAACACTCAAAGGCAGGAAG 59.048 45.455 0.00 0.00 0.00 3.46
3290 5255 9.632807 CATGCTATCTCTAAGATACTTTACACC 57.367 37.037 0.00 0.00 36.20 4.16
3452 5512 0.764271 TCCAGTGTGCACTTCCATGA 59.236 50.000 19.41 4.44 40.20 3.07
3763 5823 5.894807 AGTCAAAACCAAACACTCATGAAG 58.105 37.500 0.00 0.00 0.00 3.02
3857 5921 7.777910 TGGGAAATAATAACAGAACATGGGTAG 59.222 37.037 0.00 0.00 0.00 3.18
4298 6625 9.346725 CAAGCCTAGTCAAATTATTTCAACTTC 57.653 33.333 7.32 0.87 0.00 3.01
4310 6637 5.046376 CCCAAATTTCCAAGCCTAGTCAAAT 60.046 40.000 0.00 0.00 0.00 2.32
4311 6638 4.283212 CCCAAATTTCCAAGCCTAGTCAAA 59.717 41.667 0.00 0.00 0.00 2.69
4316 6643 1.482182 GCCCCAAATTTCCAAGCCTAG 59.518 52.381 0.00 0.00 0.00 3.02
4318 6645 0.473501 TGCCCCAAATTTCCAAGCCT 60.474 50.000 0.00 0.00 0.00 4.58
4319 6646 0.620030 ATGCCCCAAATTTCCAAGCC 59.380 50.000 0.00 0.00 0.00 4.35
4320 6647 1.741528 CATGCCCCAAATTTCCAAGC 58.258 50.000 0.00 0.00 0.00 4.01
4322 6649 1.278699 GAGCATGCCCCAAATTTCCAA 59.721 47.619 15.66 0.00 0.00 3.53
4323 6650 0.903942 GAGCATGCCCCAAATTTCCA 59.096 50.000 15.66 0.00 0.00 3.53
4324 6651 0.178767 GGAGCATGCCCCAAATTTCC 59.821 55.000 14.28 7.99 0.00 3.13
4325 6652 1.134610 CAGGAGCATGCCCCAAATTTC 60.135 52.381 21.52 5.88 0.00 2.17
4326 6653 0.906775 CAGGAGCATGCCCCAAATTT 59.093 50.000 21.52 0.00 0.00 1.82
4328 6655 2.062177 GCAGGAGCATGCCCCAAAT 61.062 57.895 21.52 0.00 40.43 2.32
4329 6656 2.681064 GCAGGAGCATGCCCCAAA 60.681 61.111 21.52 0.00 40.43 3.28
4335 6662 3.806667 AGGGGAGCAGGAGCATGC 61.807 66.667 10.51 10.51 46.88 4.06
4336 6663 2.192443 CAGGGGAGCAGGAGCATG 59.808 66.667 0.00 0.00 45.49 4.06
4337 6664 3.806667 GCAGGGGAGCAGGAGCAT 61.807 66.667 0.00 0.00 45.49 3.79
4340 6667 3.795041 CAGGCAGGGGAGCAGGAG 61.795 72.222 0.00 0.00 35.83 3.69
4343 6670 4.106925 GACCAGGCAGGGGAGCAG 62.107 72.222 0.00 0.00 43.89 4.24
4346 6673 2.317149 GAATCGACCAGGCAGGGGAG 62.317 65.000 0.00 0.00 43.89 4.30
4347 6674 2.285368 AATCGACCAGGCAGGGGA 60.285 61.111 0.00 0.00 43.89 4.81
4348 6675 2.190578 GAATCGACCAGGCAGGGG 59.809 66.667 0.00 0.00 43.89 4.79
4349 6676 2.202932 CGAATCGACCAGGCAGGG 60.203 66.667 0.00 0.00 43.89 4.45
4350 6677 2.202932 CCGAATCGACCAGGCAGG 60.203 66.667 3.36 0.00 45.67 4.85
4354 6681 4.891727 CCGGCCGAATCGACCAGG 62.892 72.222 30.73 6.64 27.71 4.45
4355 6682 3.833645 TCCGGCCGAATCGACCAG 61.834 66.667 30.73 6.27 27.71 4.00
4370 6697 3.462678 GAGTCCCTCCCAGCGTCC 61.463 72.222 0.00 0.00 0.00 4.79
4371 6698 3.462678 GGAGTCCCTCCCAGCGTC 61.463 72.222 0.00 0.00 44.36 5.19
4394 6721 3.650950 CTGTGTGTGGGGGAGGGG 61.651 72.222 0.00 0.00 0.00 4.79
4395 6722 4.351054 GCTGTGTGTGGGGGAGGG 62.351 72.222 0.00 0.00 0.00 4.30
4396 6723 3.569210 TGCTGTGTGTGGGGGAGG 61.569 66.667 0.00 0.00 0.00 4.30
4397 6724 2.281761 GTGCTGTGTGTGGGGGAG 60.282 66.667 0.00 0.00 0.00 4.30
4398 6725 3.884774 GGTGCTGTGTGTGGGGGA 61.885 66.667 0.00 0.00 0.00 4.81
4399 6726 4.974721 GGGTGCTGTGTGTGGGGG 62.975 72.222 0.00 0.00 0.00 5.40
4400 6727 3.850098 GAGGGTGCTGTGTGTGGGG 62.850 68.421 0.00 0.00 0.00 4.96
4401 6728 2.281761 GAGGGTGCTGTGTGTGGG 60.282 66.667 0.00 0.00 0.00 4.61
4402 6729 1.893808 GTGAGGGTGCTGTGTGTGG 60.894 63.158 0.00 0.00 0.00 4.17
4403 6730 1.153188 TGTGAGGGTGCTGTGTGTG 60.153 57.895 0.00 0.00 0.00 3.82
4404 6731 1.153168 GTGTGAGGGTGCTGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
4405 6732 1.146930 AGTGTGAGGGTGCTGTGTG 59.853 57.895 0.00 0.00 0.00 3.82
4406 6733 1.146930 CAGTGTGAGGGTGCTGTGT 59.853 57.895 0.00 0.00 0.00 3.72
4407 6734 2.256591 GCAGTGTGAGGGTGCTGTG 61.257 63.158 0.00 0.00 34.23 3.66
4408 6735 2.060567 ATGCAGTGTGAGGGTGCTGT 62.061 55.000 0.00 0.00 38.09 4.40
4409 6736 0.892358 AATGCAGTGTGAGGGTGCTG 60.892 55.000 0.00 0.00 38.09 4.41
4410 6737 0.607489 GAATGCAGTGTGAGGGTGCT 60.607 55.000 0.00 0.00 38.09 4.40
4411 6738 1.589716 GGAATGCAGTGTGAGGGTGC 61.590 60.000 0.00 0.00 37.73 5.01
4412 6739 0.250858 TGGAATGCAGTGTGAGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
4413 6740 0.700564 ATGGAATGCAGTGTGAGGGT 59.299 50.000 0.00 0.00 0.00 4.34
4414 6741 1.064906 AGATGGAATGCAGTGTGAGGG 60.065 52.381 0.00 0.00 0.00 4.30
4415 6742 2.014857 CAGATGGAATGCAGTGTGAGG 58.985 52.381 0.00 0.00 0.00 3.86
4416 6743 2.708051 ACAGATGGAATGCAGTGTGAG 58.292 47.619 0.00 0.00 0.00 3.51
4417 6744 2.865119 ACAGATGGAATGCAGTGTGA 57.135 45.000 0.00 0.00 0.00 3.58
4418 6745 3.620374 GTCTACAGATGGAATGCAGTGTG 59.380 47.826 0.00 0.00 0.00 3.82
4419 6746 3.677148 CGTCTACAGATGGAATGCAGTGT 60.677 47.826 0.00 0.00 0.00 3.55
4420 6747 2.862536 CGTCTACAGATGGAATGCAGTG 59.137 50.000 0.00 0.00 0.00 3.66
4421 6748 2.739932 GCGTCTACAGATGGAATGCAGT 60.740 50.000 0.00 0.00 0.00 4.40
4422 6749 1.863454 GCGTCTACAGATGGAATGCAG 59.137 52.381 0.00 0.00 0.00 4.41
4423 6750 1.482182 AGCGTCTACAGATGGAATGCA 59.518 47.619 0.00 0.00 0.00 3.96
4424 6751 1.863454 CAGCGTCTACAGATGGAATGC 59.137 52.381 0.84 0.00 0.00 3.56
4472 7191 2.221299 CCCGGTGACTTGGGGAGAA 61.221 63.158 0.00 0.00 44.10 2.87
4652 7372 4.592485 ACGCAAAATGTTTGGGTTATCA 57.408 36.364 15.27 0.00 41.85 2.15
4744 7486 3.936372 TGCAGGCCTCGATAAGTATAC 57.064 47.619 0.00 0.00 0.00 1.47
4754 7496 1.202568 TCTAACATGATGCAGGCCTCG 60.203 52.381 0.00 0.00 0.00 4.63
4755 7497 2.627515 TCTAACATGATGCAGGCCTC 57.372 50.000 0.00 0.00 0.00 4.70
4857 7603 4.917415 GCAATCAACAGTGATACACCAAAC 59.083 41.667 0.00 0.00 44.02 2.93
4928 7837 4.630644 ATAGCAAGGTCTATCATGTGGG 57.369 45.455 0.00 0.00 0.00 4.61
4930 7839 6.769822 AGGAAAATAGCAAGGTCTATCATGTG 59.230 38.462 0.00 0.00 0.00 3.21
5633 8768 9.838975 TGTAAACAGCATAAATGACTTTGTATG 57.161 29.630 0.00 0.00 0.00 2.39
5657 8792 8.905850 TGACATTGCATCTGATAATTATGTTGT 58.094 29.630 1.78 0.00 0.00 3.32
5685 8825 5.824904 ATCAAAACAGCAGGCTACTTATG 57.175 39.130 0.00 0.00 0.00 1.90
5690 8830 7.264373 ACATATAATCAAAACAGCAGGCTAC 57.736 36.000 0.00 0.00 0.00 3.58
5692 9050 5.300286 GGACATATAATCAAAACAGCAGGCT 59.700 40.000 0.00 0.00 0.00 4.58
5707 9065 7.998383 AGGAGCACAAACATATTGGACATATAA 59.002 33.333 0.00 0.00 0.00 0.98
5731 9089 3.551846 ACCAATAAAACGGGAGCATAGG 58.448 45.455 0.00 0.00 0.00 2.57
6044 9404 1.895131 GCAAATCCAGAGAAAAGGCCA 59.105 47.619 5.01 0.00 0.00 5.36
6242 9603 1.219213 ACCCCAAACCAAATCCACTCA 59.781 47.619 0.00 0.00 0.00 3.41
6306 9672 8.723942 ATGAGTTACCTGATTATTGAACAGAC 57.276 34.615 0.00 0.00 34.07 3.51
6315 9681 9.884814 AGGAAGTAGTATGAGTTACCTGATTAT 57.115 33.333 0.00 0.00 0.00 1.28
6316 9682 9.352191 GAGGAAGTAGTATGAGTTACCTGATTA 57.648 37.037 0.00 0.00 0.00 1.75
6343 9715 5.563751 CGTTCACGACACTTATTTTGGAATG 59.436 40.000 0.00 0.00 43.02 2.67
6353 9725 1.948834 TCTGTCCGTTCACGACACTTA 59.051 47.619 0.00 0.00 43.02 2.24
6365 9737 0.676151 GACGTACTCCCTCTGTCCGT 60.676 60.000 0.00 0.00 0.00 4.69
6366 9738 0.675837 TGACGTACTCCCTCTGTCCG 60.676 60.000 0.00 0.00 0.00 4.79
6367 9739 0.810016 GTGACGTACTCCCTCTGTCC 59.190 60.000 0.00 0.00 0.00 4.02
6368 9740 1.531423 TGTGACGTACTCCCTCTGTC 58.469 55.000 0.00 0.00 0.00 3.51
6370 9742 1.611977 TGTTGTGACGTACTCCCTCTG 59.388 52.381 0.00 0.00 0.00 3.35
6371 9743 1.991121 TGTTGTGACGTACTCCCTCT 58.009 50.000 0.00 0.00 0.00 3.69
6384 9766 8.174422 TGACACGTCATTTATTCATATGTTGTG 58.826 33.333 1.90 0.00 35.79 3.33
6386 9768 7.370576 CGTGACACGTCATTTATTCATATGTTG 59.629 37.037 19.77 0.00 42.18 3.33
6448 9830 9.865321 CATCTTGACATTTTGGTGATATTTCTT 57.135 29.630 0.00 0.00 0.00 2.52
6449 9831 9.246670 TCATCTTGACATTTTGGTGATATTTCT 57.753 29.630 0.00 0.00 0.00 2.52
6455 9837 9.071276 GGTATATCATCTTGACATTTTGGTGAT 57.929 33.333 0.00 0.00 0.00 3.06
6456 9838 7.226523 CGGTATATCATCTTGACATTTTGGTGA 59.773 37.037 0.00 0.00 0.00 4.02
6457 9839 7.355017 CGGTATATCATCTTGACATTTTGGTG 58.645 38.462 0.00 0.00 0.00 4.17
6458 9840 6.486657 CCGGTATATCATCTTGACATTTTGGT 59.513 38.462 0.00 0.00 0.00 3.67
6459 9841 6.568462 GCCGGTATATCATCTTGACATTTTGG 60.568 42.308 1.90 0.00 0.00 3.28
6460 9842 6.373779 GCCGGTATATCATCTTGACATTTTG 58.626 40.000 1.90 0.00 0.00 2.44
6461 9843 5.179368 CGCCGGTATATCATCTTGACATTTT 59.821 40.000 1.90 0.00 0.00 1.82
6462 9844 4.690748 CGCCGGTATATCATCTTGACATTT 59.309 41.667 1.90 0.00 0.00 2.32
6463 9845 4.245660 CGCCGGTATATCATCTTGACATT 58.754 43.478 1.90 0.00 0.00 2.71
6464 9846 3.849911 CGCCGGTATATCATCTTGACAT 58.150 45.455 1.90 0.00 0.00 3.06
6465 9847 2.609491 GCGCCGGTATATCATCTTGACA 60.609 50.000 1.90 0.00 0.00 3.58
6466 9848 1.993370 GCGCCGGTATATCATCTTGAC 59.007 52.381 1.90 0.00 0.00 3.18
6467 9849 1.616374 TGCGCCGGTATATCATCTTGA 59.384 47.619 4.18 0.00 0.00 3.02
6468 9850 1.995484 CTGCGCCGGTATATCATCTTG 59.005 52.381 4.18 0.00 0.00 3.02
6469 9851 1.618837 ACTGCGCCGGTATATCATCTT 59.381 47.619 4.18 0.00 0.00 2.40
6470 9852 1.202582 GACTGCGCCGGTATATCATCT 59.797 52.381 4.18 0.00 0.00 2.90
6471 9853 1.202582 AGACTGCGCCGGTATATCATC 59.797 52.381 4.18 0.00 0.00 2.92
6472 9854 1.202582 GAGACTGCGCCGGTATATCAT 59.797 52.381 4.18 0.00 0.00 2.45
6473 9855 0.596577 GAGACTGCGCCGGTATATCA 59.403 55.000 4.18 0.00 0.00 2.15
6474 9856 0.882474 AGAGACTGCGCCGGTATATC 59.118 55.000 4.18 3.70 0.00 1.63
6475 9857 2.085320 CTAGAGACTGCGCCGGTATAT 58.915 52.381 4.18 0.90 0.00 0.86
6476 9858 1.071228 TCTAGAGACTGCGCCGGTATA 59.929 52.381 4.18 0.00 0.00 1.47
6477 9859 0.179026 TCTAGAGACTGCGCCGGTAT 60.179 55.000 4.18 0.21 0.00 2.73
6478 9860 0.393402 TTCTAGAGACTGCGCCGGTA 60.393 55.000 4.18 0.00 0.00 4.02
6479 9861 1.658686 CTTCTAGAGACTGCGCCGGT 61.659 60.000 4.18 3.35 0.00 5.28
6480 9862 1.064946 CTTCTAGAGACTGCGCCGG 59.935 63.158 4.18 0.00 0.00 6.13
6481 9863 1.064946 CCTTCTAGAGACTGCGCCG 59.935 63.158 4.18 0.00 0.00 6.46
6482 9864 0.179124 CACCTTCTAGAGACTGCGCC 60.179 60.000 4.18 0.00 0.00 6.53
6483 9865 0.804156 GCACCTTCTAGAGACTGCGC 60.804 60.000 0.00 0.00 0.00 6.09
6484 9866 0.814457 AGCACCTTCTAGAGACTGCG 59.186 55.000 10.33 0.00 35.29 5.18
6485 9867 1.821753 TGAGCACCTTCTAGAGACTGC 59.178 52.381 8.75 8.75 32.13 4.40
6486 9868 4.278170 CCTATGAGCACCTTCTAGAGACTG 59.722 50.000 0.00 0.00 0.00 3.51
6487 9869 4.469657 CCTATGAGCACCTTCTAGAGACT 58.530 47.826 0.00 0.00 0.00 3.24
6488 9870 3.572255 CCCTATGAGCACCTTCTAGAGAC 59.428 52.174 0.00 0.00 0.00 3.36
6489 9871 3.463704 TCCCTATGAGCACCTTCTAGAGA 59.536 47.826 0.00 0.00 0.00 3.10
6490 9872 3.838565 TCCCTATGAGCACCTTCTAGAG 58.161 50.000 0.00 0.00 0.00 2.43
6491 9873 3.973472 TCCCTATGAGCACCTTCTAGA 57.027 47.619 0.00 0.00 0.00 2.43
6492 9874 4.709397 CCTATCCCTATGAGCACCTTCTAG 59.291 50.000 0.00 0.00 0.00 2.43
6493 9875 4.511112 CCCTATCCCTATGAGCACCTTCTA 60.511 50.000 0.00 0.00 0.00 2.10
6494 9876 3.515562 CCTATCCCTATGAGCACCTTCT 58.484 50.000 0.00 0.00 0.00 2.85
6495 9877 2.569404 CCCTATCCCTATGAGCACCTTC 59.431 54.545 0.00 0.00 0.00 3.46
6496 9878 2.089925 ACCCTATCCCTATGAGCACCTT 60.090 50.000 0.00 0.00 0.00 3.50
6497 9879 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
6498 9880 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
6499 9881 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
6500 9882 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
6501 9883 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
6502 9884 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
6503 9885 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
6504 9886 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
6505 9887 1.692519 GAACGCACACCCTATCCCTAT 59.307 52.381 0.00 0.00 0.00 2.57
6506 9888 1.117150 GAACGCACACCCTATCCCTA 58.883 55.000 0.00 0.00 0.00 3.53
6507 9889 0.907704 TGAACGCACACCCTATCCCT 60.908 55.000 0.00 0.00 0.00 4.20
6508 9890 0.180406 ATGAACGCACACCCTATCCC 59.820 55.000 0.00 0.00 0.00 3.85
6509 9891 2.548067 CCTATGAACGCACACCCTATCC 60.548 54.545 0.00 0.00 0.00 2.59
6510 9892 2.548067 CCCTATGAACGCACACCCTATC 60.548 54.545 0.00 0.00 0.00 2.08
6511 9893 1.416401 CCCTATGAACGCACACCCTAT 59.584 52.381 0.00 0.00 0.00 2.57
6512 9894 0.828022 CCCTATGAACGCACACCCTA 59.172 55.000 0.00 0.00 0.00 3.53
6513 9895 1.602237 CCCTATGAACGCACACCCT 59.398 57.895 0.00 0.00 0.00 4.34
6514 9896 1.451387 CCCCTATGAACGCACACCC 60.451 63.158 0.00 0.00 0.00 4.61
6515 9897 1.024579 CACCCCTATGAACGCACACC 61.025 60.000 0.00 0.00 0.00 4.16
6516 9898 1.024579 CCACCCCTATGAACGCACAC 61.025 60.000 0.00 0.00 0.00 3.82
6517 9899 1.195442 TCCACCCCTATGAACGCACA 61.195 55.000 0.00 0.00 0.00 4.57
6518 9900 0.180406 ATCCACCCCTATGAACGCAC 59.820 55.000 0.00 0.00 0.00 5.34
6519 9901 0.180171 CATCCACCCCTATGAACGCA 59.820 55.000 0.00 0.00 0.00 5.24
6520 9902 0.180406 ACATCCACCCCTATGAACGC 59.820 55.000 0.00 0.00 0.00 4.84
6521 9903 3.664107 CATACATCCACCCCTATGAACG 58.336 50.000 0.00 0.00 0.00 3.95
6522 9904 3.412386 GCATACATCCACCCCTATGAAC 58.588 50.000 0.00 0.00 0.00 3.18
6523 9905 2.375174 GGCATACATCCACCCCTATGAA 59.625 50.000 0.00 0.00 0.00 2.57
6524 9906 1.985159 GGCATACATCCACCCCTATGA 59.015 52.381 0.00 0.00 0.00 2.15
6525 9907 1.004745 GGGCATACATCCACCCCTATG 59.995 57.143 0.00 0.00 36.24 2.23
6526 9908 1.372501 GGGCATACATCCACCCCTAT 58.627 55.000 0.00 0.00 36.24 2.57
6527 9909 1.125093 CGGGCATACATCCACCCCTA 61.125 60.000 0.00 0.00 39.34 3.53
6528 9910 2.452064 CGGGCATACATCCACCCCT 61.452 63.158 0.00 0.00 39.34 4.79
6529 9911 1.412453 TACGGGCATACATCCACCCC 61.412 60.000 0.00 0.00 39.34 4.95
6530 9912 0.690762 ATACGGGCATACATCCACCC 59.309 55.000 0.00 0.00 39.12 4.61
6531 9913 3.906720 ATATACGGGCATACATCCACC 57.093 47.619 0.00 0.00 0.00 4.61
6546 9928 6.854892 ACAGACACAAACGCTCGTATATATAC 59.145 38.462 12.18 12.18 0.00 1.47
6547 9929 6.962686 ACAGACACAAACGCTCGTATATATA 58.037 36.000 0.00 0.00 0.00 0.86
6548 9930 5.828747 ACAGACACAAACGCTCGTATATAT 58.171 37.500 0.00 0.00 0.00 0.86
6549 9931 5.239359 ACAGACACAAACGCTCGTATATA 57.761 39.130 0.00 0.00 0.00 0.86
6550 9932 4.106029 ACAGACACAAACGCTCGTATAT 57.894 40.909 0.00 0.00 0.00 0.86
6551 9933 3.564235 ACAGACACAAACGCTCGTATA 57.436 42.857 0.00 0.00 0.00 1.47
6552 9934 2.433868 ACAGACACAAACGCTCGTAT 57.566 45.000 0.00 0.00 0.00 3.06
6553 9935 2.291465 AGTACAGACACAAACGCTCGTA 59.709 45.455 0.00 0.00 0.00 3.43
6554 9936 1.066605 AGTACAGACACAAACGCTCGT 59.933 47.619 0.00 0.00 0.00 4.18
6555 9937 1.452025 CAGTACAGACACAAACGCTCG 59.548 52.381 0.00 0.00 0.00 5.03
6556 9938 2.739292 TCAGTACAGACACAAACGCTC 58.261 47.619 0.00 0.00 0.00 5.03
6557 9939 2.882927 TCAGTACAGACACAAACGCT 57.117 45.000 0.00 0.00 0.00 5.07
6558 9940 2.800544 ACATCAGTACAGACACAAACGC 59.199 45.455 0.00 0.00 0.00 4.84
6559 9941 4.375005 CGAACATCAGTACAGACACAAACG 60.375 45.833 0.00 0.00 0.00 3.60
6560 9942 4.743151 TCGAACATCAGTACAGACACAAAC 59.257 41.667 0.00 0.00 0.00 2.93
6561 9943 4.939271 TCGAACATCAGTACAGACACAAA 58.061 39.130 0.00 0.00 0.00 2.83
6562 9944 4.577834 TCGAACATCAGTACAGACACAA 57.422 40.909 0.00 0.00 0.00 3.33
6563 9945 4.577834 TTCGAACATCAGTACAGACACA 57.422 40.909 0.00 0.00 0.00 3.72
6564 9946 5.900339 TTTTCGAACATCAGTACAGACAC 57.100 39.130 0.00 0.00 0.00 3.67
6594 9976 8.782144 GCCAAAATGAATTTCCAATTTTAGTGA 58.218 29.630 6.96 0.00 0.00 3.41
6595 9977 8.566260 TGCCAAAATGAATTTCCAATTTTAGTG 58.434 29.630 6.96 2.85 0.00 2.74
6596 9978 8.567104 GTGCCAAAATGAATTTCCAATTTTAGT 58.433 29.630 6.96 0.00 0.00 2.24
6597 9979 8.566260 TGTGCCAAAATGAATTTCCAATTTTAG 58.434 29.630 6.96 3.18 0.00 1.85
6598 9980 8.455903 TGTGCCAAAATGAATTTCCAATTTTA 57.544 26.923 6.96 0.00 0.00 1.52
6599 9981 7.344095 TGTGCCAAAATGAATTTCCAATTTT 57.656 28.000 0.00 0.00 0.00 1.82
6600 9982 6.956202 TGTGCCAAAATGAATTTCCAATTT 57.044 29.167 0.00 0.00 0.00 1.82
6601 9983 6.071840 CCATGTGCCAAAATGAATTTCCAATT 60.072 34.615 0.00 0.00 0.00 2.32
6602 9984 5.416326 CCATGTGCCAAAATGAATTTCCAAT 59.584 36.000 0.00 0.00 0.00 3.16
6603 9985 4.760715 CCATGTGCCAAAATGAATTTCCAA 59.239 37.500 0.00 0.00 0.00 3.53
6604 9986 4.325119 CCATGTGCCAAAATGAATTTCCA 58.675 39.130 0.00 0.00 0.00 3.53
6605 9987 3.690628 CCCATGTGCCAAAATGAATTTCC 59.309 43.478 0.00 0.00 0.00 3.13
6606 9988 4.577875 TCCCATGTGCCAAAATGAATTTC 58.422 39.130 0.00 0.00 0.00 2.17
6607 9989 4.637387 TCCCATGTGCCAAAATGAATTT 57.363 36.364 0.00 0.00 0.00 1.82
6608 9990 4.202440 TGTTCCCATGTGCCAAAATGAATT 60.202 37.500 0.00 0.00 0.00 2.17
6609 9991 3.327172 TGTTCCCATGTGCCAAAATGAAT 59.673 39.130 0.00 0.00 0.00 2.57
6610 9992 2.702478 TGTTCCCATGTGCCAAAATGAA 59.298 40.909 0.00 0.00 0.00 2.57
6611 9993 2.323599 TGTTCCCATGTGCCAAAATGA 58.676 42.857 0.00 0.00 0.00 2.57
6612 9994 2.835580 TGTTCCCATGTGCCAAAATG 57.164 45.000 0.00 0.00 0.00 2.32
6613 9995 5.026038 CATATGTTCCCATGTGCCAAAAT 57.974 39.130 0.00 0.00 34.09 1.82
6614 9996 4.468765 CATATGTTCCCATGTGCCAAAA 57.531 40.909 0.00 0.00 34.09 2.44
6620 10002 2.882761 CAGGAGCATATGTTCCCATGTG 59.117 50.000 29.04 19.21 45.27 3.21
6621 10003 2.750807 GCAGGAGCATATGTTCCCATGT 60.751 50.000 29.04 12.55 45.27 3.21
6622 10004 1.884579 GCAGGAGCATATGTTCCCATG 59.115 52.381 29.04 23.21 45.27 3.66
6623 10005 1.202976 GGCAGGAGCATATGTTCCCAT 60.203 52.381 29.04 13.54 45.27 4.00
6624 10006 0.183492 GGCAGGAGCATATGTTCCCA 59.817 55.000 29.04 0.00 45.27 4.37
6625 10007 0.886490 CGGCAGGAGCATATGTTCCC 60.886 60.000 29.04 17.58 45.27 3.97
6626 10008 0.179045 ACGGCAGGAGCATATGTTCC 60.179 55.000 26.48 26.48 44.60 3.62
6627 10009 1.221414 GACGGCAGGAGCATATGTTC 58.779 55.000 10.87 10.87 44.61 3.18
6628 10010 0.530650 CGACGGCAGGAGCATATGTT 60.531 55.000 4.29 0.00 44.61 2.71
6629 10011 1.068083 CGACGGCAGGAGCATATGT 59.932 57.895 4.29 0.00 44.61 2.29
6630 10012 0.249447 TTCGACGGCAGGAGCATATG 60.249 55.000 0.00 0.00 44.61 1.78
6631 10013 0.032678 CTTCGACGGCAGGAGCATAT 59.967 55.000 0.00 0.00 44.61 1.78
6632 10014 1.035385 TCTTCGACGGCAGGAGCATA 61.035 55.000 0.00 0.00 44.61 3.14
6633 10015 1.888436 TTCTTCGACGGCAGGAGCAT 61.888 55.000 0.00 0.00 44.61 3.79
6634 10016 2.570284 TTCTTCGACGGCAGGAGCA 61.570 57.895 0.00 0.00 44.61 4.26
6635 10017 2.095252 GTTCTTCGACGGCAGGAGC 61.095 63.158 0.00 0.00 41.10 4.70
6636 10018 0.108615 ATGTTCTTCGACGGCAGGAG 60.109 55.000 0.00 0.00 0.00 3.69
6642 10024 7.021196 ACATTTTGAAATATGTTCTTCGACGG 58.979 34.615 0.00 0.00 31.14 4.79
6644 10026 8.948853 TGACATTTTGAAATATGTTCTTCGAC 57.051 30.769 7.01 0.00 35.24 4.20
6675 10057 6.586463 TGTGAGCGTAAAATTTGTGTTTGAAA 59.414 30.769 0.00 0.00 0.00 2.69
6676 10058 6.093404 TGTGAGCGTAAAATTTGTGTTTGAA 58.907 32.000 0.00 0.00 0.00 2.69
6678 10060 5.940603 TGTGAGCGTAAAATTTGTGTTTG 57.059 34.783 0.00 0.00 0.00 2.93
6679 10061 6.503524 AGATGTGAGCGTAAAATTTGTGTTT 58.496 32.000 0.00 0.00 0.00 2.83
6680 10062 6.072112 AGATGTGAGCGTAAAATTTGTGTT 57.928 33.333 0.00 0.00 0.00 3.32
6682 10064 5.688823 TGAGATGTGAGCGTAAAATTTGTG 58.311 37.500 0.00 0.00 0.00 3.33
6691 10074 3.925379 ACAATGTTGAGATGTGAGCGTA 58.075 40.909 0.00 0.00 0.00 4.42
6696 10079 5.997129 ACACACATACAATGTTGAGATGTGA 59.003 36.000 29.80 0.00 46.54 3.58
6741 10124 5.499139 ACACAAGGCATATAAAATGTCGG 57.501 39.130 0.00 0.00 0.00 4.79
6771 10154 9.914131 AAAGGCTTTTCATGAGACTTATTTTAC 57.086 29.630 6.68 0.00 41.56 2.01
6825 10209 3.181501 ACCGACAACTTTTGTGTCACATG 60.182 43.478 6.48 4.24 45.52 3.21
6855 10239 3.955771 ACGTGCATACAAACTCGTTTT 57.044 38.095 0.00 0.00 32.68 2.43
6858 10242 3.564235 TCTACGTGCATACAAACTCGT 57.436 42.857 0.00 0.00 39.15 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.