Multiple sequence alignment - TraesCS2D01G197500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G197500 chr2D 100.000 5483 0 0 1 5483 144991522 144997004 0.000000e+00 10126
1 TraesCS2D01G197500 chr2A 94.620 5539 170 50 2 5483 156764881 156759414 0.000000e+00 8460
2 TraesCS2D01G197500 chr2B 96.093 4889 132 29 616 5483 202738985 202743835 0.000000e+00 7915
3 TraesCS2D01G197500 chr2B 89.526 506 15 18 97 584 202738286 202738771 1.690000e-169 606
4 TraesCS2D01G197500 chr4D 98.333 60 1 0 1576 1635 92321394 92321453 7.510000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G197500 chr2D 144991522 144997004 5482 False 10126.0 10126 100.0000 1 5483 1 chr2D.!!$F1 5482
1 TraesCS2D01G197500 chr2A 156759414 156764881 5467 True 8460.0 8460 94.6200 2 5483 1 chr2A.!!$R1 5481
2 TraesCS2D01G197500 chr2B 202738286 202743835 5549 False 4260.5 7915 92.8095 97 5483 2 chr2B.!!$F1 5386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.173708 ACTCCATTTCTCGTCTCCGC 59.826 55.000 0.0 0.0 0.00 5.54 F
20 21 0.528684 CTCCATTTCTCGTCTCCGCC 60.529 60.000 0.0 0.0 0.00 6.13 F
37 38 0.669625 GCCGGTAAAAGAGCACGACT 60.670 55.000 1.9 0.0 0.00 4.18 F
1262 1500 0.820871 CGCTCCTTCTTCTGCTAGGT 59.179 55.000 0.0 0.0 0.00 3.08 F
2112 2350 1.347707 TCAACTACCAGAACAGCCCTG 59.652 52.381 0.0 0.0 0.00 4.45 F
3394 3637 0.850100 TTGGAAAAGAGGGTGAGCCA 59.150 50.000 2.5 0.0 36.17 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1385 1623 0.537828 TGCTTGCAATGCTCTGGTCA 60.538 50.000 17.72 0.0 37.94 4.02 R
2112 2350 5.587289 TGGTACAAAAGAACTCATGTTTGC 58.413 37.500 0.00 0.0 34.94 3.68 R
2172 2410 5.132816 CAGAAGGACCTCCCCAATTTATACT 59.867 44.000 0.00 0.0 36.42 2.12 R
3013 3255 0.700564 AGCACATCCCAGGTCAATGT 59.299 50.000 0.00 0.0 34.03 2.71 R
3520 3763 0.178906 TCCATCCTCCACAGACCACA 60.179 55.000 0.00 0.0 0.00 4.17 R
5295 5578 1.202770 GGGAAAGTACACACAGCCTGT 60.203 52.381 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.173708 ACTCCATTTCTCGTCTCCGC 59.826 55.000 0.00 0.00 0.00 5.54
20 21 0.528684 CTCCATTTCTCGTCTCCGCC 60.529 60.000 0.00 0.00 0.00 6.13
21 22 1.878522 CCATTTCTCGTCTCCGCCG 60.879 63.158 0.00 0.00 0.00 6.46
25 26 1.243342 TTTCTCGTCTCCGCCGGTAA 61.243 55.000 1.63 0.00 0.00 2.85
33 34 1.359459 CTCCGCCGGTAAAAGAGCAC 61.359 60.000 1.63 0.00 0.00 4.40
34 35 2.736682 CCGCCGGTAAAAGAGCACG 61.737 63.158 1.90 0.00 0.00 5.34
37 38 0.669625 GCCGGTAAAAGAGCACGACT 60.670 55.000 1.90 0.00 0.00 4.18
38 39 1.403249 GCCGGTAAAAGAGCACGACTA 60.403 52.381 1.90 0.00 0.00 2.59
39 40 2.737679 GCCGGTAAAAGAGCACGACTAT 60.738 50.000 1.90 0.00 0.00 2.12
47 48 6.663944 AAAAGAGCACGACTATACCATTTC 57.336 37.500 0.00 0.00 0.00 2.17
71 75 2.357034 TCGGAGCTTTCGGTGCAC 60.357 61.111 8.80 8.80 0.00 4.57
84 88 2.440539 GGTGCACGAGAAAGAAGAGA 57.559 50.000 11.45 0.00 0.00 3.10
94 98 7.634522 CACGAGAAAGAAGAGAATTTGAAACT 58.365 34.615 0.00 0.00 0.00 2.66
232 256 4.954970 CACGCACCAACCTGCCCT 62.955 66.667 0.00 0.00 33.18 5.19
856 1086 1.173043 CTCGGATCTAGCTAGCCCTG 58.827 60.000 16.35 13.88 0.00 4.45
858 1088 1.589113 GGATCTAGCTAGCCCTGCG 59.411 63.158 16.35 0.00 35.28 5.18
1243 1481 4.814234 TGGTAATTACGTGATGCCATTCTC 59.186 41.667 9.46 0.00 0.00 2.87
1261 1499 1.066908 CTCGCTCCTTCTTCTGCTAGG 59.933 57.143 0.00 0.00 0.00 3.02
1262 1500 0.820871 CGCTCCTTCTTCTGCTAGGT 59.179 55.000 0.00 0.00 0.00 3.08
1263 1501 1.470632 CGCTCCTTCTTCTGCTAGGTG 60.471 57.143 0.00 0.00 0.00 4.00
1272 1510 3.131223 TCTTCTGCTAGGTGTAGTCATGC 59.869 47.826 0.00 0.00 0.00 4.06
1385 1623 1.376649 AGAAAGCTGTTCCCAGGGAT 58.623 50.000 9.80 0.00 39.22 3.85
2112 2350 1.347707 TCAACTACCAGAACAGCCCTG 59.652 52.381 0.00 0.00 0.00 4.45
2172 2410 3.007074 TCAAGTTGGTATTACTGGCGACA 59.993 43.478 2.34 0.00 39.59 4.35
2327 2568 3.181467 CCATTGGTGAACCTTTTTCTGCA 60.181 43.478 0.37 0.00 36.82 4.41
2420 2661 3.632604 GGAGGTTCACGTCATCTGAGATA 59.367 47.826 0.00 0.00 32.79 1.98
2542 2783 3.446873 CAGACAAGCAGAGGTCAGTATCT 59.553 47.826 0.00 0.00 36.50 1.98
2698 2940 9.116067 GTTTATTAGAACCATTACACCTGCATA 57.884 33.333 0.00 0.00 0.00 3.14
2814 3056 6.058183 GGCTTACATCAGATTTGACTGGTAT 58.942 40.000 0.00 0.00 38.31 2.73
2815 3057 6.017605 GGCTTACATCAGATTTGACTGGTATG 60.018 42.308 0.00 0.00 38.31 2.39
2899 3141 6.547880 ACATTTAACTGACACAACATTGGGTA 59.452 34.615 0.00 0.00 46.60 3.69
2902 3144 4.967084 ACTGACACAACATTGGGTACTA 57.033 40.909 0.00 0.00 46.60 1.82
2967 3209 3.146066 ACTTTTGGACGCATCAGCTTTA 58.854 40.909 0.00 0.00 39.10 1.85
3012 3254 2.489619 GGGAGCATTGCCTTCATCCATA 60.490 50.000 13.88 0.00 0.00 2.74
3013 3255 3.225104 GGAGCATTGCCTTCATCCATAA 58.775 45.455 4.70 0.00 0.00 1.90
3065 3307 7.658525 ATGCCTGACAAACATAATGGATTAA 57.341 32.000 0.00 0.00 0.00 1.40
3121 3364 4.913924 GCCAAGTAAATCGATGCAATGATC 59.086 41.667 0.00 0.00 0.00 2.92
3218 3461 4.936891 ACAAATTTTGTGACCAGCTCTTC 58.063 39.130 13.80 0.00 43.48 2.87
3394 3637 0.850100 TTGGAAAAGAGGGTGAGCCA 59.150 50.000 2.50 0.00 36.17 4.75
3395 3638 1.075601 TGGAAAAGAGGGTGAGCCAT 58.924 50.000 2.50 0.00 36.17 4.40
3428 3671 4.155644 TGAGAACATTTTGTATGCATGCGA 59.844 37.500 14.09 4.74 0.00 5.10
3429 3672 5.058149 AGAACATTTTGTATGCATGCGAA 57.942 34.783 14.09 12.92 0.00 4.70
3472 3715 9.601971 GCAAATCACTTGTCTAAATACGTTTAA 57.398 29.630 0.00 0.00 37.36 1.52
3519 3762 8.709386 AAGTGAAGTATGTATTGACTCATGTC 57.291 34.615 0.00 0.00 43.20 3.06
3520 3763 8.072321 AGTGAAGTATGTATTGACTCATGTCT 57.928 34.615 0.00 0.00 43.29 3.41
3521 3764 7.978414 AGTGAAGTATGTATTGACTCATGTCTG 59.022 37.037 0.00 0.00 43.29 3.51
3522 3765 7.761704 GTGAAGTATGTATTGACTCATGTCTGT 59.238 37.037 0.00 0.00 43.29 3.41
3523 3766 7.761249 TGAAGTATGTATTGACTCATGTCTGTG 59.239 37.037 0.00 0.00 43.29 3.66
3560 3803 9.178758 GATGGACATATGTTAGTTCTTCCTTTT 57.821 33.333 10.30 0.00 0.00 2.27
3561 3804 8.335532 TGGACATATGTTAGTTCTTCCTTTTG 57.664 34.615 10.30 0.00 0.00 2.44
3608 3851 7.839680 AAATTACCATTTTCTGTCAGGACTT 57.160 32.000 0.00 0.00 0.00 3.01
3609 3852 7.454260 AATTACCATTTTCTGTCAGGACTTC 57.546 36.000 0.00 0.00 0.00 3.01
3611 3854 5.053978 ACCATTTTCTGTCAGGACTTCTT 57.946 39.130 0.00 0.00 0.00 2.52
3673 3919 9.539825 CTGTGCTTGATTGATAGTTTAGATACT 57.460 33.333 0.00 0.00 0.00 2.12
3818 4072 5.913137 TGGCAACAGGTTAATCCTATTTG 57.087 39.130 0.00 10.29 46.24 2.32
3869 4123 7.431668 ACGAAGTTTGATAGCGATTCTAACTAC 59.568 37.037 11.42 0.00 37.78 2.73
3901 4155 3.688185 ACAGCATAGTCAATCAGTTGCAG 59.312 43.478 0.00 0.00 35.26 4.41
3905 4159 4.409570 CATAGTCAATCAGTTGCAGTTGC 58.590 43.478 0.00 0.00 42.50 4.17
4008 4262 9.624697 GTTTTGATCTTTATACTTTGATGCACA 57.375 29.630 0.00 0.00 0.00 4.57
4166 4421 3.818210 AGGACATGAGCTATACTCTGTCG 59.182 47.826 0.00 0.00 45.14 4.35
4167 4422 3.560503 GACATGAGCTATACTCTGTCGC 58.439 50.000 0.00 0.00 46.41 5.19
4378 4644 3.002656 CGAGTCTGTTTGTTGTCAATGCT 59.997 43.478 0.00 0.00 33.32 3.79
4484 4750 3.116096 TGCAGGTATCACTTCCTAGGT 57.884 47.619 9.08 0.00 32.26 3.08
4883 5149 2.427095 AGCTTGCGTGTTTTTCCTCTTT 59.573 40.909 0.00 0.00 0.00 2.52
4930 5196 2.572104 ACTAGAGGATTTGGTCGGCTTT 59.428 45.455 0.00 0.00 0.00 3.51
4931 5197 3.773119 ACTAGAGGATTTGGTCGGCTTTA 59.227 43.478 0.00 0.00 0.00 1.85
5012 5278 5.880332 CACCCAAAGTACATACTATGTTGCT 59.120 40.000 7.01 4.09 41.63 3.91
5013 5279 6.374333 CACCCAAAGTACATACTATGTTGCTT 59.626 38.462 7.01 9.17 41.63 3.91
5014 5280 6.598064 ACCCAAAGTACATACTATGTTGCTTC 59.402 38.462 7.01 0.00 41.63 3.86
5015 5281 6.823689 CCCAAAGTACATACTATGTTGCTTCT 59.176 38.462 7.01 2.77 41.63 2.85
5016 5282 7.336931 CCCAAAGTACATACTATGTTGCTTCTT 59.663 37.037 7.01 3.37 41.63 2.52
5017 5283 8.391106 CCAAAGTACATACTATGTTGCTTCTTC 58.609 37.037 7.01 0.00 41.63 2.87
5018 5284 9.155975 CAAAGTACATACTATGTTGCTTCTTCT 57.844 33.333 7.01 0.00 41.63 2.85
5019 5285 9.726438 AAAGTACATACTATGTTGCTTCTTCTT 57.274 29.630 7.01 0.00 41.63 2.52
5020 5286 8.934507 AGTACATACTATGTTGCTTCTTCTTC 57.065 34.615 7.01 0.00 41.63 2.87
5021 5287 8.754080 AGTACATACTATGTTGCTTCTTCTTCT 58.246 33.333 7.01 0.00 41.63 2.85
5022 5288 9.372369 GTACATACTATGTTGCTTCTTCTTCTT 57.628 33.333 7.01 0.00 41.63 2.52
5023 5289 8.261492 ACATACTATGTTGCTTCTTCTTCTTG 57.739 34.615 0.00 0.00 41.63 3.02
5026 5292 6.963796 ACTATGTTGCTTCTTCTTCTTGTTG 58.036 36.000 0.00 0.00 0.00 3.33
5029 5307 5.401550 TGTTGCTTCTTCTTCTTGTTGTTG 58.598 37.500 0.00 0.00 0.00 3.33
5047 5325 8.050778 TGTTGTTGTTCTTCTGTGTCTATTTT 57.949 30.769 0.00 0.00 0.00 1.82
5295 5578 6.593807 TGCCTTTTAGGTAGTTGAAGTACAA 58.406 36.000 11.86 0.00 37.80 2.41
5333 5616 6.852372 ACTTTCCCTCCCTCTATAAATAGCTT 59.148 38.462 0.00 0.00 0.00 3.74
5479 5766 0.813184 CTGATGGTTGCCGATGCTTT 59.187 50.000 0.00 0.00 38.71 3.51
5480 5767 0.810648 TGATGGTTGCCGATGCTTTC 59.189 50.000 0.00 0.00 38.71 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.642139 TAGTCGTGCTCTTTTACCGG 57.358 50.000 0.00 0.00 0.00 5.28
20 21 4.040376 GGTATAGTCGTGCTCTTTTACCG 58.960 47.826 0.00 0.00 0.00 4.02
21 22 5.002464 TGGTATAGTCGTGCTCTTTTACC 57.998 43.478 0.00 0.00 0.00 2.85
25 26 5.730550 TGAAATGGTATAGTCGTGCTCTTT 58.269 37.500 0.00 0.00 0.00 2.52
33 34 5.276868 CCGAGCTTTTGAAATGGTATAGTCG 60.277 44.000 0.00 0.00 0.00 4.18
34 35 5.815740 TCCGAGCTTTTGAAATGGTATAGTC 59.184 40.000 0.00 0.00 0.00 2.59
37 38 4.574828 GCTCCGAGCTTTTGAAATGGTATA 59.425 41.667 13.42 0.00 38.45 1.47
38 39 3.378427 GCTCCGAGCTTTTGAAATGGTAT 59.622 43.478 13.42 0.00 38.45 2.73
39 40 2.747446 GCTCCGAGCTTTTGAAATGGTA 59.253 45.455 13.42 0.00 38.45 3.25
71 75 7.074502 CCAGTTTCAAATTCTCTTCTTTCTCG 58.925 38.462 0.00 0.00 0.00 4.04
84 88 3.037549 TGAACCTGCCCAGTTTCAAATT 58.962 40.909 5.89 0.00 37.00 1.82
94 98 2.669133 CCGGAGATGAACCTGCCCA 61.669 63.158 0.00 0.00 0.00 5.36
232 256 4.345859 AATCGCATAAAACTATCCGGGA 57.654 40.909 0.00 0.00 0.00 5.14
235 259 6.021055 CGGATAATCGCATAAAACTATCCG 57.979 41.667 12.39 12.39 46.77 4.18
357 383 3.788766 CTTTTGCGCGGACGGAGG 61.789 66.667 8.83 0.00 42.06 4.30
614 658 3.077556 CGGAGGAGGAGGTGGTGG 61.078 72.222 0.00 0.00 0.00 4.61
1068 1306 1.083489 CGAAGCGGCCAAAGTATTCA 58.917 50.000 2.24 0.00 0.00 2.57
1243 1481 0.820871 ACCTAGCAGAAGAAGGAGCG 59.179 55.000 0.00 0.00 34.34 5.03
1261 1499 1.393539 ACGAAATGCGCATGACTACAC 59.606 47.619 26.09 9.26 46.04 2.90
1262 1500 1.720805 ACGAAATGCGCATGACTACA 58.279 45.000 26.09 0.00 46.04 2.74
1263 1501 2.430956 CAACGAAATGCGCATGACTAC 58.569 47.619 26.09 12.33 46.04 2.73
1385 1623 0.537828 TGCTTGCAATGCTCTGGTCA 60.538 50.000 17.72 0.00 37.94 4.02
2112 2350 5.587289 TGGTACAAAAGAACTCATGTTTGC 58.413 37.500 0.00 0.00 34.94 3.68
2172 2410 5.132816 CAGAAGGACCTCCCCAATTTATACT 59.867 44.000 0.00 0.00 36.42 2.12
2327 2568 6.183360 TGTTCATTTCATATGCATTGGCTGAT 60.183 34.615 3.54 0.00 41.91 2.90
2542 2783 5.710513 ACTGATAGCAAAATGTTGAAGCA 57.289 34.783 0.00 0.00 36.83 3.91
2698 2940 8.377799 ACATTTTTCCTTTCCAAAAGCATAGAT 58.622 29.630 0.00 0.00 0.00 1.98
2740 2982 9.866798 CTCTAGCATCAACTGATTAAGCATATA 57.133 33.333 0.00 0.00 31.21 0.86
2814 3056 4.136796 CCTTCAAGTTCAATCCACTGACA 58.863 43.478 0.00 0.00 0.00 3.58
2815 3057 4.389374 TCCTTCAAGTTCAATCCACTGAC 58.611 43.478 0.00 0.00 0.00 3.51
2998 3240 4.402155 GGTCAATGTTATGGATGAAGGCAA 59.598 41.667 0.00 0.00 0.00 4.52
3012 3254 1.076024 AGCACATCCCAGGTCAATGTT 59.924 47.619 0.00 0.00 31.43 2.71
3013 3255 0.700564 AGCACATCCCAGGTCAATGT 59.299 50.000 0.00 0.00 34.03 2.71
3065 3307 4.686191 TGCAAAACAAATCATTGGTCCT 57.314 36.364 0.00 0.00 41.01 3.85
3121 3364 5.710984 GGATACTGAATACATCCTACACCG 58.289 45.833 0.00 0.00 36.17 4.94
3366 3609 8.478066 GCTCACCCTCTTTTCCAATTTTATTAT 58.522 33.333 0.00 0.00 0.00 1.28
3367 3610 7.093509 GGCTCACCCTCTTTTCCAATTTTATTA 60.094 37.037 0.00 0.00 0.00 0.98
3428 3671 2.241160 TGCTCAGCCAATGACAACATT 58.759 42.857 0.00 0.00 46.10 2.71
3429 3672 1.913778 TGCTCAGCCAATGACAACAT 58.086 45.000 0.00 0.00 38.50 2.71
3472 3715 7.439056 CACTTAATGCAAGTTCCAAACTGATTT 59.561 33.333 0.00 0.00 45.54 2.17
3517 3760 1.066573 CATCCTCCACAGACCACAGAC 60.067 57.143 0.00 0.00 0.00 3.51
3518 3761 1.269958 CATCCTCCACAGACCACAGA 58.730 55.000 0.00 0.00 0.00 3.41
3519 3762 0.251354 CCATCCTCCACAGACCACAG 59.749 60.000 0.00 0.00 0.00 3.66
3520 3763 0.178906 TCCATCCTCCACAGACCACA 60.179 55.000 0.00 0.00 0.00 4.17
3521 3764 0.250513 GTCCATCCTCCACAGACCAC 59.749 60.000 0.00 0.00 0.00 4.16
3522 3765 0.178906 TGTCCATCCTCCACAGACCA 60.179 55.000 0.00 0.00 0.00 4.02
3523 3766 1.207791 ATGTCCATCCTCCACAGACC 58.792 55.000 0.00 0.00 0.00 3.85
3608 3851 5.365314 AGCTTTGGAAATAAAACCACCAAGA 59.635 36.000 0.00 0.00 40.80 3.02
3609 3852 5.610398 AGCTTTGGAAATAAAACCACCAAG 58.390 37.500 0.00 0.00 40.80 3.61
3611 3854 5.836358 AGTAGCTTTGGAAATAAAACCACCA 59.164 36.000 0.00 0.00 35.81 4.17
3775 4022 6.371548 TGCCAGAATTCTAAACACATACAGAC 59.628 38.462 7.86 0.00 0.00 3.51
3831 4085 7.898309 GCTATCAAACTTCGTTGTAGTACATTG 59.102 37.037 3.28 4.19 0.00 2.82
3869 4123 9.926751 CTGATTGACTATGCTGTAATTACAAAG 57.073 33.333 18.55 14.74 35.50 2.77
3883 4137 4.409570 GCAACTGCAACTGATTGACTATG 58.590 43.478 0.00 0.00 41.59 2.23
3945 4199 2.493035 TCTGACTCAGCGCATTTTCAA 58.507 42.857 11.47 0.00 0.00 2.69
4008 4262 1.145738 AGCAACATGACCCAGTCCTTT 59.854 47.619 0.00 0.00 0.00 3.11
4320 4586 3.552890 GCATGTACGATGCACCTCAGATA 60.553 47.826 19.12 0.00 44.00 1.98
4931 5197 7.558807 GCACCCCCAAATAGTTTTTACTAGTAT 59.441 37.037 2.79 0.00 0.00 2.12
5004 5270 6.942532 ACAACAAGAAGAAGAAGCAACATA 57.057 33.333 0.00 0.00 0.00 2.29
5012 5278 7.174946 ACAGAAGAACAACAACAAGAAGAAGAA 59.825 33.333 0.00 0.00 0.00 2.52
5013 5279 6.655003 ACAGAAGAACAACAACAAGAAGAAGA 59.345 34.615 0.00 0.00 0.00 2.87
5014 5280 6.744537 CACAGAAGAACAACAACAAGAAGAAG 59.255 38.462 0.00 0.00 0.00 2.85
5015 5281 6.206634 ACACAGAAGAACAACAACAAGAAGAA 59.793 34.615 0.00 0.00 0.00 2.52
5016 5282 5.705441 ACACAGAAGAACAACAACAAGAAGA 59.295 36.000 0.00 0.00 0.00 2.87
5017 5283 5.942872 ACACAGAAGAACAACAACAAGAAG 58.057 37.500 0.00 0.00 0.00 2.85
5018 5284 5.705441 AGACACAGAAGAACAACAACAAGAA 59.295 36.000 0.00 0.00 0.00 2.52
5019 5285 5.245531 AGACACAGAAGAACAACAACAAGA 58.754 37.500 0.00 0.00 0.00 3.02
5020 5286 5.551760 AGACACAGAAGAACAACAACAAG 57.448 39.130 0.00 0.00 0.00 3.16
5021 5287 7.624360 AATAGACACAGAAGAACAACAACAA 57.376 32.000 0.00 0.00 0.00 2.83
5022 5288 7.624360 AAATAGACACAGAAGAACAACAACA 57.376 32.000 0.00 0.00 0.00 3.33
5023 5289 8.911247 AAAAATAGACACAGAAGAACAACAAC 57.089 30.769 0.00 0.00 0.00 3.32
5026 5292 9.118236 GCATAAAAATAGACACAGAAGAACAAC 57.882 33.333 0.00 0.00 0.00 3.32
5029 5307 6.961554 CGGCATAAAAATAGACACAGAAGAAC 59.038 38.462 0.00 0.00 0.00 3.01
5047 5325 4.575885 AGAAGAAACTAGCAACGGCATAA 58.424 39.130 0.00 0.00 44.61 1.90
5295 5578 1.202770 GGGAAAGTACACACAGCCTGT 60.203 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.