Multiple sequence alignment - TraesCS2D01G197400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G197400 chr2D 100.000 4296 0 0 1 4296 144564763 144569058 0.000000e+00 7934
1 TraesCS2D01G197400 chr2D 94.464 289 15 1 3651 3939 540821227 540821514 1.100000e-120 444
2 TraesCS2D01G197400 chr2A 96.377 3671 110 10 1 3654 157116527 157112863 0.000000e+00 6021
3 TraesCS2D01G197400 chr2A 87.738 367 31 5 3935 4296 157112866 157112509 2.390000e-112 416
4 TraesCS2D01G197400 chr2A 82.927 164 24 2 3944 4103 722063502 722063665 1.250000e-30 145
5 TraesCS2D01G197400 chr2B 94.589 3696 116 27 1 3654 202595114 202598767 0.000000e+00 5640
6 TraesCS2D01G197400 chr1D 96.516 287 10 0 3651 3937 349468689 349468403 3.890000e-130 475
7 TraesCS2D01G197400 chr6D 95.876 291 12 0 3648 3938 100351942 100351652 5.030000e-129 472
8 TraesCS2D01G197400 chr6D 95.819 287 12 0 3651 3937 420715567 420715853 8.410000e-127 464
9 TraesCS2D01G197400 chr6D 95.156 289 13 1 3651 3938 438834910 438835198 5.060000e-124 455
10 TraesCS2D01G197400 chr4B 95.517 290 13 0 3650 3939 4525793 4526082 8.410000e-127 464
11 TraesCS2D01G197400 chr4B 93.333 300 19 1 3638 3937 490320245 490320543 3.940000e-120 442
12 TraesCS2D01G197400 chr3D 95.053 283 14 0 3653 3935 596078875 596079157 3.050000e-121 446
13 TraesCS2D01G197400 chr3A 93.898 295 18 0 3646 3940 703772974 703773268 3.050000e-121 446


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G197400 chr2D 144564763 144569058 4295 False 7934.0 7934 100.0000 1 4296 1 chr2D.!!$F1 4295
1 TraesCS2D01G197400 chr2A 157112509 157116527 4018 True 3218.5 6021 92.0575 1 4296 2 chr2A.!!$R1 4295
2 TraesCS2D01G197400 chr2B 202595114 202598767 3653 False 5640.0 5640 94.5890 1 3654 1 chr2B.!!$F1 3653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 768 0.605589 AAACGCTGAGACCAGAGGAG 59.394 55.0 0.0 0.00 43.32 3.69 F
1107 1147 0.332972 TCCTGCTGCAGAGGAGAGTA 59.667 55.0 30.1 8.07 40.04 2.59 F
2367 2418 0.741927 TACCTCGTGCAGATCGTCGA 60.742 55.0 0.0 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2367 2418 0.179073 CGGCCGGAGTTTCAGATCAT 60.179 55.000 20.1 0.0 0.0 2.45 R
2562 2619 1.410517 CAGAATCGGCAGCTTCCTCTA 59.589 52.381 0.0 0.0 0.0 2.43 R
4041 4098 0.037303 AGCCACAATCACACCCAGAG 59.963 55.000 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 3.380479 TTTCACAGTTCCGTGGTCTAG 57.620 47.619 0.00 0.00 37.50 2.43
222 230 2.476051 GTCAATGTGCACGCTCGG 59.524 61.111 13.13 0.00 0.00 4.63
369 381 1.056660 TCTCGAGGGAGGCAGTTTTT 58.943 50.000 13.56 0.00 40.85 1.94
384 396 3.670055 CAGTTTTTAAATGAGGCTGCGTG 59.330 43.478 0.00 0.00 0.00 5.34
467 485 1.293498 GAGAGCTCGTTGAAGCCCA 59.707 57.895 8.37 0.00 43.56 5.36
542 563 1.949525 CCAGTTGGTTCAACAGTCCAG 59.050 52.381 12.46 0.00 45.66 3.86
738 763 1.063806 CGAGAAAACGCTGAGACCAG 58.936 55.000 0.00 0.00 43.22 4.00
739 764 1.335964 CGAGAAAACGCTGAGACCAGA 60.336 52.381 0.00 0.00 43.02 3.86
740 765 2.333014 GAGAAAACGCTGAGACCAGAG 58.667 52.381 0.00 0.00 43.02 3.35
742 767 1.000955 GAAAACGCTGAGACCAGAGGA 59.999 52.381 0.00 0.00 43.32 3.71
743 768 0.605589 AAACGCTGAGACCAGAGGAG 59.394 55.000 0.00 0.00 43.32 3.69
745 770 2.422231 CGCTGAGACCAGAGGAGGG 61.422 68.421 0.00 0.00 43.02 4.30
867 900 1.758123 CGCCTCCCTATGTTACTCCCT 60.758 57.143 0.00 0.00 0.00 4.20
868 901 1.972075 GCCTCCCTATGTTACTCCCTC 59.028 57.143 0.00 0.00 0.00 4.30
869 902 2.610873 CCTCCCTATGTTACTCCCTCC 58.389 57.143 0.00 0.00 0.00 4.30
873 906 2.180308 CCCTATGTTACTCCCTCCCTCT 59.820 54.545 0.00 0.00 0.00 3.69
913 950 1.337260 GCGCTCCGATCCTTGACATAT 60.337 52.381 0.00 0.00 0.00 1.78
914 951 2.094700 GCGCTCCGATCCTTGACATATA 60.095 50.000 0.00 0.00 0.00 0.86
915 952 3.502920 CGCTCCGATCCTTGACATATAC 58.497 50.000 0.00 0.00 0.00 1.47
917 954 4.380973 CGCTCCGATCCTTGACATATACAT 60.381 45.833 0.00 0.00 0.00 2.29
922 962 8.507524 TCCGATCCTTGACATATACATACTAG 57.492 38.462 0.00 0.00 0.00 2.57
1077 1117 1.389609 TTAGCCCTTACTCGAGCCCG 61.390 60.000 13.61 0.00 37.07 6.13
1107 1147 0.332972 TCCTGCTGCAGAGGAGAGTA 59.667 55.000 30.10 8.07 40.04 2.59
1159 1201 1.268079 GCTTGTTTCTCTTGTCTGGCC 59.732 52.381 0.00 0.00 0.00 5.36
1163 1205 2.087646 GTTTCTCTTGTCTGGCCATCC 58.912 52.381 5.51 0.00 0.00 3.51
1261 1303 1.081892 CTTCATTCTGCACAGGGTCG 58.918 55.000 0.00 0.00 0.00 4.79
1277 1319 3.175240 CGGTCAGAGCTTGCGACG 61.175 66.667 0.00 0.00 0.00 5.12
1546 1591 2.345760 GGCGGAGTTCCTGGACGTA 61.346 63.158 0.00 0.00 0.00 3.57
2367 2418 0.741927 TACCTCGTGCAGATCGTCGA 60.742 55.000 0.00 0.00 0.00 4.20
2512 2563 2.125713 CGGTCACACGCTGGCATA 60.126 61.111 0.00 0.00 0.00 3.14
2524 2575 3.244112 ACGCTGGCATAGTTATTAGTCCC 60.244 47.826 0.00 0.00 0.00 4.46
2562 2619 4.792068 TGAATTTTCAACTGTCCCTGACT 58.208 39.130 0.00 0.00 33.55 3.41
2585 2642 1.427020 GAAGCTGCCGATTCTGTGC 59.573 57.895 0.00 0.00 32.94 4.57
2725 2782 3.499737 CGGTTCATCGTGCAGGCC 61.500 66.667 0.35 0.00 0.00 5.19
2893 2950 2.845317 ACCACCAGCCCGTACACA 60.845 61.111 0.00 0.00 0.00 3.72
3061 3118 4.921834 CTGAAAGGAGGCTCGGTC 57.078 61.111 8.69 6.12 0.00 4.79
3099 3156 4.070552 GAGCTTCAGGGCGGACGT 62.071 66.667 0.00 0.00 37.29 4.34
3508 3565 3.069729 AGTTACTGTCAGGTTCAGGTGTC 59.930 47.826 4.53 0.00 37.25 3.67
3551 3608 3.118149 AGGTGAAGTGGGTACTTTCGTTT 60.118 43.478 0.00 0.00 46.79 3.60
3654 3711 3.434637 GTTGCACTGTGTTGTGTTTAGG 58.565 45.455 9.86 0.00 39.89 2.69
3655 3712 1.403679 TGCACTGTGTTGTGTTTAGGC 59.596 47.619 9.86 0.00 39.89 3.93
3656 3713 1.269051 GCACTGTGTTGTGTTTAGGCC 60.269 52.381 9.86 0.00 39.89 5.19
3657 3714 2.020720 CACTGTGTTGTGTTTAGGCCA 58.979 47.619 5.01 0.00 33.61 5.36
3658 3715 2.622942 CACTGTGTTGTGTTTAGGCCAT 59.377 45.455 5.01 0.00 33.61 4.40
3659 3716 2.622942 ACTGTGTTGTGTTTAGGCCATG 59.377 45.455 5.01 0.00 0.00 3.66
3660 3717 2.622942 CTGTGTTGTGTTTAGGCCATGT 59.377 45.455 5.01 0.00 0.00 3.21
3661 3718 3.027412 TGTGTTGTGTTTAGGCCATGTT 58.973 40.909 5.01 0.00 0.00 2.71
3662 3719 3.449018 TGTGTTGTGTTTAGGCCATGTTT 59.551 39.130 5.01 0.00 0.00 2.83
3663 3720 3.801594 GTGTTGTGTTTAGGCCATGTTTG 59.198 43.478 5.01 0.00 0.00 2.93
3664 3721 3.181471 TGTTGTGTTTAGGCCATGTTTGG 60.181 43.478 5.01 0.00 46.66 3.28
3665 3722 2.672098 TGTGTTTAGGCCATGTTTGGT 58.328 42.857 5.01 0.00 45.57 3.67
3666 3723 3.034635 TGTGTTTAGGCCATGTTTGGTT 58.965 40.909 5.01 0.00 45.57 3.67
3667 3724 3.068873 TGTGTTTAGGCCATGTTTGGTTC 59.931 43.478 5.01 0.00 45.57 3.62
3668 3725 3.068873 GTGTTTAGGCCATGTTTGGTTCA 59.931 43.478 5.01 0.00 45.57 3.18
3669 3726 3.900601 TGTTTAGGCCATGTTTGGTTCAT 59.099 39.130 5.01 0.00 45.57 2.57
3670 3727 5.047660 GTGTTTAGGCCATGTTTGGTTCATA 60.048 40.000 5.01 0.00 45.57 2.15
3671 3728 5.540337 TGTTTAGGCCATGTTTGGTTCATAA 59.460 36.000 5.01 0.00 45.57 1.90
3672 3729 5.913137 TTAGGCCATGTTTGGTTCATAAG 57.087 39.130 5.01 0.00 45.57 1.73
3673 3730 3.778265 AGGCCATGTTTGGTTCATAAGT 58.222 40.909 5.01 0.00 45.57 2.24
3674 3731 3.763897 AGGCCATGTTTGGTTCATAAGTC 59.236 43.478 5.01 0.00 45.57 3.01
3675 3732 3.119137 GGCCATGTTTGGTTCATAAGTCC 60.119 47.826 0.00 0.00 45.57 3.85
3676 3733 3.763897 GCCATGTTTGGTTCATAAGTCCT 59.236 43.478 0.00 0.00 45.57 3.85
3677 3734 4.947388 GCCATGTTTGGTTCATAAGTCCTA 59.053 41.667 0.00 0.00 45.57 2.94
3678 3735 5.066505 GCCATGTTTGGTTCATAAGTCCTAG 59.933 44.000 0.00 0.00 45.57 3.02
3679 3736 5.590259 CCATGTTTGGTTCATAAGTCCTAGG 59.410 44.000 0.82 0.82 38.30 3.02
3680 3737 6.414732 CATGTTTGGTTCATAAGTCCTAGGA 58.585 40.000 7.62 7.62 0.00 2.94
3681 3738 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
3682 3739 5.308497 TGTTTGGTTCATAAGTCCTAGGACA 59.692 40.000 37.27 22.26 46.76 4.02
3683 3740 6.012858 TGTTTGGTTCATAAGTCCTAGGACAT 60.013 38.462 37.27 30.12 46.76 3.06
3684 3741 6.636454 TTGGTTCATAAGTCCTAGGACATT 57.364 37.500 37.27 28.77 46.76 2.71
3685 3742 6.636454 TGGTTCATAAGTCCTAGGACATTT 57.364 37.500 37.27 27.11 46.76 2.32
3686 3743 7.027874 TGGTTCATAAGTCCTAGGACATTTT 57.972 36.000 37.27 26.48 46.76 1.82
3687 3744 7.466804 TGGTTCATAAGTCCTAGGACATTTTT 58.533 34.615 37.27 26.17 46.76 1.94
3709 3766 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
3710 3767 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
3711 3768 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
3712 3769 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
3713 3770 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
3714 3771 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
3715 3772 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
3716 3773 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
3717 3774 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
3718 3775 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
3719 3776 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
3720 3777 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
3721 3778 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
3722 3779 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
3723 3780 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
3724 3781 4.808767 AGTCCCAAGTCCCTAAAAAGTT 57.191 40.909 0.00 0.00 0.00 2.66
3725 3782 4.726583 AGTCCCAAGTCCCTAAAAAGTTC 58.273 43.478 0.00 0.00 0.00 3.01
3726 3783 3.825014 GTCCCAAGTCCCTAAAAAGTTCC 59.175 47.826 0.00 0.00 0.00 3.62
3727 3784 3.725267 TCCCAAGTCCCTAAAAAGTTCCT 59.275 43.478 0.00 0.00 0.00 3.36
3728 3785 4.915194 TCCCAAGTCCCTAAAAAGTTCCTA 59.085 41.667 0.00 0.00 0.00 2.94
3729 3786 5.008331 CCCAAGTCCCTAAAAAGTTCCTAC 58.992 45.833 0.00 0.00 0.00 3.18
3730 3787 5.222068 CCCAAGTCCCTAAAAAGTTCCTACT 60.222 44.000 0.00 0.00 35.68 2.57
3731 3788 6.304624 CCAAGTCCCTAAAAAGTTCCTACTT 58.695 40.000 0.00 0.00 46.44 2.24
3732 3789 6.206829 CCAAGTCCCTAAAAAGTTCCTACTTG 59.793 42.308 0.00 0.00 43.74 3.16
3733 3790 6.511017 AGTCCCTAAAAAGTTCCTACTTGT 57.489 37.500 0.00 0.00 43.74 3.16
3734 3791 6.907961 AGTCCCTAAAAAGTTCCTACTTGTT 58.092 36.000 0.00 0.00 43.74 2.83
3735 3792 7.351952 AGTCCCTAAAAAGTTCCTACTTGTTT 58.648 34.615 0.00 2.63 43.74 2.83
3736 3793 7.837689 AGTCCCTAAAAAGTTCCTACTTGTTTT 59.162 33.333 0.00 0.00 43.74 2.43
3737 3794 7.919091 GTCCCTAAAAAGTTCCTACTTGTTTTG 59.081 37.037 0.00 1.71 43.74 2.44
3738 3795 7.616542 TCCCTAAAAAGTTCCTACTTGTTTTGT 59.383 33.333 0.00 0.00 43.74 2.83
3739 3796 8.255206 CCCTAAAAAGTTCCTACTTGTTTTGTT 58.745 33.333 0.00 0.00 43.74 2.83
3740 3797 9.647797 CCTAAAAAGTTCCTACTTGTTTTGTTT 57.352 29.630 0.00 0.00 43.74 2.83
3743 3800 8.757164 AAAAGTTCCTACTTGTTTTGTTTCTG 57.243 30.769 0.00 0.00 43.74 3.02
3744 3801 6.451064 AGTTCCTACTTGTTTTGTTTCTGG 57.549 37.500 0.00 0.00 0.00 3.86
3745 3802 5.359860 AGTTCCTACTTGTTTTGTTTCTGGG 59.640 40.000 0.00 0.00 0.00 4.45
3746 3803 5.118729 TCCTACTTGTTTTGTTTCTGGGA 57.881 39.130 0.00 0.00 0.00 4.37
3747 3804 4.885325 TCCTACTTGTTTTGTTTCTGGGAC 59.115 41.667 0.00 0.00 0.00 4.46
3748 3805 4.887655 CCTACTTGTTTTGTTTCTGGGACT 59.112 41.667 0.00 0.00 0.00 3.85
3749 3806 5.359860 CCTACTTGTTTTGTTTCTGGGACTT 59.640 40.000 0.00 0.00 0.00 3.01
3750 3807 6.544564 CCTACTTGTTTTGTTTCTGGGACTTA 59.455 38.462 0.00 0.00 0.00 2.24
3751 3808 6.844097 ACTTGTTTTGTTTCTGGGACTTAA 57.156 33.333 0.00 0.00 0.00 1.85
3752 3809 6.627243 ACTTGTTTTGTTTCTGGGACTTAAC 58.373 36.000 0.00 0.00 0.00 2.01
3753 3810 6.209788 ACTTGTTTTGTTTCTGGGACTTAACA 59.790 34.615 0.00 0.00 0.00 2.41
3754 3811 6.783708 TGTTTTGTTTCTGGGACTTAACAT 57.216 33.333 0.00 0.00 31.30 2.71
3755 3812 6.568869 TGTTTTGTTTCTGGGACTTAACATG 58.431 36.000 0.00 0.00 31.30 3.21
3756 3813 5.782893 TTTGTTTCTGGGACTTAACATGG 57.217 39.130 0.00 0.00 31.30 3.66
3757 3814 4.715534 TGTTTCTGGGACTTAACATGGA 57.284 40.909 0.00 0.00 0.00 3.41
3758 3815 4.394729 TGTTTCTGGGACTTAACATGGAC 58.605 43.478 0.00 0.00 0.00 4.02
3759 3816 4.104102 TGTTTCTGGGACTTAACATGGACT 59.896 41.667 0.00 0.00 0.00 3.85
3760 3817 5.308497 TGTTTCTGGGACTTAACATGGACTA 59.692 40.000 0.00 0.00 0.00 2.59
3761 3818 6.183361 TGTTTCTGGGACTTAACATGGACTAA 60.183 38.462 0.00 0.00 0.00 2.24
3762 3819 6.442541 TTCTGGGACTTAACATGGACTAAA 57.557 37.500 0.00 0.00 0.00 1.85
3763 3820 6.442541 TCTGGGACTTAACATGGACTAAAA 57.557 37.500 0.00 0.00 0.00 1.52
3764 3821 6.472887 TCTGGGACTTAACATGGACTAAAAG 58.527 40.000 0.00 0.00 0.00 2.27
3765 3822 6.271391 TCTGGGACTTAACATGGACTAAAAGA 59.729 38.462 0.00 0.00 0.00 2.52
3766 3823 6.235664 TGGGACTTAACATGGACTAAAAGAC 58.764 40.000 0.00 0.00 0.00 3.01
3767 3824 5.646793 GGGACTTAACATGGACTAAAAGACC 59.353 44.000 0.00 1.56 0.00 3.85
3768 3825 6.235664 GGACTTAACATGGACTAAAAGACCA 58.764 40.000 0.00 0.74 43.65 4.02
3770 3827 8.044908 GGACTTAACATGGACTAAAAGACCATA 58.955 37.037 9.96 0.00 46.31 2.74
3771 3828 9.614792 GACTTAACATGGACTAAAAGACCATAT 57.385 33.333 9.96 6.06 46.31 1.78
3772 3829 9.975218 ACTTAACATGGACTAAAAGACCATATT 57.025 29.630 9.96 8.42 46.31 1.28
3776 3833 9.747898 AACATGGACTAAAAGACCATATTACAA 57.252 29.630 9.96 0.00 46.31 2.41
3777 3834 9.174166 ACATGGACTAAAAGACCATATTACAAC 57.826 33.333 9.96 0.00 46.31 3.32
3778 3835 9.396022 CATGGACTAAAAGACCATATTACAACT 57.604 33.333 9.96 0.00 46.31 3.16
3788 3845 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
3799 3856 9.577222 ACAACTATAAGTCCCTATAAGACTCTC 57.423 37.037 5.74 0.00 43.77 3.20
3800 3857 9.016438 CAACTATAAGTCCCTATAAGACTCTCC 57.984 40.741 5.74 0.00 43.77 3.71
3801 3858 8.528543 ACTATAAGTCCCTATAAGACTCTCCT 57.471 38.462 5.74 0.00 43.77 3.69
3802 3859 8.962205 ACTATAAGTCCCTATAAGACTCTCCTT 58.038 37.037 5.74 0.00 43.77 3.36
3803 3860 9.238368 CTATAAGTCCCTATAAGACTCTCCTTG 57.762 40.741 5.74 0.00 43.77 3.61
3804 3861 5.735733 AGTCCCTATAAGACTCTCCTTGA 57.264 43.478 0.24 0.00 40.61 3.02
3805 3862 5.701224 AGTCCCTATAAGACTCTCCTTGAG 58.299 45.833 0.24 0.00 40.61 3.02
3806 3863 5.433712 AGTCCCTATAAGACTCTCCTTGAGA 59.566 44.000 0.00 0.00 45.39 3.27
3822 3879 9.261035 TCTCCTTGAGAGTCTTATTTCATAAGT 57.739 33.333 0.00 0.00 43.71 2.24
3823 3880 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
3824 3881 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
3825 3882 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
3826 3883 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
3827 3884 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
3828 3885 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
3829 3886 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
3830 3887 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
3831 3888 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
3832 3889 6.912591 GTCTTATTTCATAAGTCCCAAATGCG 59.087 38.462 3.93 0.00 42.21 4.73
3833 3890 3.502191 TTTCATAAGTCCCAAATGCGC 57.498 42.857 0.00 0.00 0.00 6.09
3834 3891 2.121291 TCATAAGTCCCAAATGCGCA 57.879 45.000 14.96 14.96 0.00 6.09
3835 3892 1.742831 TCATAAGTCCCAAATGCGCAC 59.257 47.619 14.90 0.00 0.00 5.34
3836 3893 1.745087 CATAAGTCCCAAATGCGCACT 59.255 47.619 14.90 0.00 0.00 4.40
3837 3894 1.904287 TAAGTCCCAAATGCGCACTT 58.096 45.000 14.90 4.62 0.00 3.16
3838 3895 1.039856 AAGTCCCAAATGCGCACTTT 58.960 45.000 14.90 12.11 0.00 2.66
3839 3896 1.904287 AGTCCCAAATGCGCACTTTA 58.096 45.000 14.90 0.00 0.00 1.85
3840 3897 2.235016 AGTCCCAAATGCGCACTTTAA 58.765 42.857 14.90 0.00 0.00 1.52
3841 3898 2.228822 AGTCCCAAATGCGCACTTTAAG 59.771 45.455 14.90 9.34 0.00 1.85
3842 3899 2.030274 GTCCCAAATGCGCACTTTAAGT 60.030 45.455 14.90 0.00 0.00 2.24
3843 3900 2.227865 TCCCAAATGCGCACTTTAAGTC 59.772 45.455 14.90 0.00 0.00 3.01
3844 3901 2.595386 CCAAATGCGCACTTTAAGTCC 58.405 47.619 14.90 0.00 0.00 3.85
3845 3902 2.595386 CAAATGCGCACTTTAAGTCCC 58.405 47.619 14.90 0.00 0.00 4.46
3846 3903 2.200373 AATGCGCACTTTAAGTCCCT 57.800 45.000 14.90 0.00 0.00 4.20
3847 3904 3.343941 AATGCGCACTTTAAGTCCCTA 57.656 42.857 14.90 0.00 0.00 3.53
3848 3905 3.560636 ATGCGCACTTTAAGTCCCTAT 57.439 42.857 14.90 0.00 0.00 2.57
3849 3906 4.682778 ATGCGCACTTTAAGTCCCTATA 57.317 40.909 14.90 0.00 0.00 1.31
3850 3907 4.475051 TGCGCACTTTAAGTCCCTATAA 57.525 40.909 5.66 0.00 0.00 0.98
3851 3908 4.439057 TGCGCACTTTAAGTCCCTATAAG 58.561 43.478 5.66 0.00 0.00 1.73
3852 3909 4.081309 TGCGCACTTTAAGTCCCTATAAGT 60.081 41.667 5.66 0.00 0.00 2.24
3853 3910 4.507021 GCGCACTTTAAGTCCCTATAAGTC 59.493 45.833 0.30 0.00 0.00 3.01
3854 3911 5.048507 CGCACTTTAAGTCCCTATAAGTCC 58.951 45.833 0.00 0.00 0.00 3.85
3855 3912 5.366460 GCACTTTAAGTCCCTATAAGTCCC 58.634 45.833 0.00 0.00 0.00 4.46
3856 3913 5.130643 GCACTTTAAGTCCCTATAAGTCCCT 59.869 44.000 0.00 0.00 0.00 4.20
3857 3914 6.685873 GCACTTTAAGTCCCTATAAGTCCCTC 60.686 46.154 0.00 0.00 0.00 4.30
3858 3915 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
3859 3916 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
3860 3917 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
3861 3918 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
3862 3919 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
3863 3920 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
3864 3921 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
3865 3922 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
3866 3923 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
3867 3924 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
3868 3925 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
3869 3926 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
3870 3927 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
3871 3928 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
3872 3929 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
3873 3930 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
3874 3931 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
3875 3932 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
3876 3933 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
3877 3934 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
3878 3935 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
3879 3936 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
3880 3937 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
3881 3938 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
3882 3939 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
3883 3940 7.499232 CCTGTTTGGTTTAGATGGGACTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
3884 3941 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
3885 3942 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
3886 3943 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
3887 3944 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
3888 3945 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
3889 3946 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
3890 3947 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
3891 3948 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
3892 3949 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
3915 3972 8.640063 TTTTAAGTCCCTAAACCAATAAGTCC 57.360 34.615 0.00 0.00 0.00 3.85
3916 3973 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
3917 3974 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
3918 3975 4.227527 AGTCCCTAAACCAATAAGTCCCTG 59.772 45.833 0.00 0.00 0.00 4.45
3919 3976 4.226620 GTCCCTAAACCAATAAGTCCCTGA 59.773 45.833 0.00 0.00 0.00 3.86
3920 3977 4.853276 TCCCTAAACCAATAAGTCCCTGAA 59.147 41.667 0.00 0.00 0.00 3.02
3921 3978 5.313772 TCCCTAAACCAATAAGTCCCTGAAA 59.686 40.000 0.00 0.00 0.00 2.69
3922 3979 6.014012 CCCTAAACCAATAAGTCCCTGAAAA 58.986 40.000 0.00 0.00 0.00 2.29
3923 3980 6.071560 CCCTAAACCAATAAGTCCCTGAAAAC 60.072 42.308 0.00 0.00 0.00 2.43
3924 3981 6.492087 CCTAAACCAATAAGTCCCTGAAAACA 59.508 38.462 0.00 0.00 0.00 2.83
3925 3982 6.800072 AAACCAATAAGTCCCTGAAAACAA 57.200 33.333 0.00 0.00 0.00 2.83
3926 3983 6.800072 AACCAATAAGTCCCTGAAAACAAA 57.200 33.333 0.00 0.00 0.00 2.83
3927 3984 6.156748 ACCAATAAGTCCCTGAAAACAAAC 57.843 37.500 0.00 0.00 0.00 2.93
3928 3985 5.659079 ACCAATAAGTCCCTGAAAACAAACA 59.341 36.000 0.00 0.00 0.00 2.83
3929 3986 5.983118 CCAATAAGTCCCTGAAAACAAACAC 59.017 40.000 0.00 0.00 0.00 3.32
3930 3987 5.784578 ATAAGTCCCTGAAAACAAACACC 57.215 39.130 0.00 0.00 0.00 4.16
3931 3988 2.384828 AGTCCCTGAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
3932 3989 2.024369 AGTCCCTGAAAACAAACACCCT 60.024 45.455 0.00 0.00 0.00 4.34
3933 3990 2.361119 GTCCCTGAAAACAAACACCCTC 59.639 50.000 0.00 0.00 0.00 4.30
3934 3991 2.243736 TCCCTGAAAACAAACACCCTCT 59.756 45.455 0.00 0.00 0.00 3.69
3935 3992 3.031013 CCCTGAAAACAAACACCCTCTT 58.969 45.455 0.00 0.00 0.00 2.85
3936 3993 4.079672 TCCCTGAAAACAAACACCCTCTTA 60.080 41.667 0.00 0.00 0.00 2.10
3937 3994 4.278419 CCCTGAAAACAAACACCCTCTTAG 59.722 45.833 0.00 0.00 0.00 2.18
3966 4023 5.520288 ACACTTTAGCTACATATCAGTTGCG 59.480 40.000 0.00 0.00 43.43 4.85
3999 4056 5.766150 ATTTTGGTCAGTCGATTTTGTGA 57.234 34.783 0.00 0.00 0.00 3.58
4013 4070 1.164411 TTGTGACCGTTGGATCATGC 58.836 50.000 0.00 0.00 0.00 4.06
4019 4076 2.228822 GACCGTTGGATCATGCTTTGTT 59.771 45.455 0.00 0.00 0.00 2.83
4024 4081 5.392919 CCGTTGGATCATGCTTTGTTATTCA 60.393 40.000 0.00 0.00 0.00 2.57
4034 4091 9.755804 TCATGCTTTGTTATTCATGTGTTTTAA 57.244 25.926 0.00 0.00 37.95 1.52
4035 4092 9.796062 CATGCTTTGTTATTCATGTGTTTTAAC 57.204 29.630 0.00 0.00 33.55 2.01
4046 4103 8.925161 TTCATGTGTTTTAACTTTTTCTCTGG 57.075 30.769 0.00 0.00 0.00 3.86
4049 4106 6.626302 TGTGTTTTAACTTTTTCTCTGGGTG 58.374 36.000 0.00 0.00 0.00 4.61
4083 4142 0.400213 TTGGGCTTGGTGATCGACTT 59.600 50.000 0.00 0.00 0.00 3.01
4088 4147 1.066430 GCTTGGTGATCGACTTACCCA 60.066 52.381 10.90 0.58 33.51 4.51
4110 4169 5.750650 CAAATTTTGGGTCAGTCAATTTGC 58.249 37.500 0.97 0.00 37.76 3.68
4111 4170 4.961438 ATTTTGGGTCAGTCAATTTGCT 57.039 36.364 0.00 0.00 0.00 3.91
4112 4171 4.751767 TTTTGGGTCAGTCAATTTGCTT 57.248 36.364 0.00 0.00 0.00 3.91
4126 4185 1.795170 TTGCTTCTTGGGCTCGTTGC 61.795 55.000 0.00 0.00 41.94 4.17
4156 4218 1.952296 GCTCGAGGACCCGTTAATCTA 59.048 52.381 15.58 0.00 0.00 1.98
4166 4228 2.483188 CCCGTTAATCTACTGAGCCCAC 60.483 54.545 0.00 0.00 0.00 4.61
4171 4233 2.531483 ATCTACTGAGCCCACCCCGT 62.531 60.000 0.00 0.00 0.00 5.28
4172 4234 3.000819 TACTGAGCCCACCCCGTG 61.001 66.667 0.00 0.00 0.00 4.94
4235 4297 2.743928 GTGCCCTCAGCCACTTCG 60.744 66.667 0.00 0.00 42.71 3.79
4249 4311 1.179814 ACTTCGCCTCCTCTGTTCGT 61.180 55.000 0.00 0.00 0.00 3.85
4257 4319 2.432444 CTCCTCTGTTCGTCACTCTCT 58.568 52.381 0.00 0.00 0.00 3.10
4260 4322 2.817258 CCTCTGTTCGTCACTCTCTCTT 59.183 50.000 0.00 0.00 0.00 2.85
4272 4334 5.125417 GTCACTCTCTCTTGCTCTATGTCTT 59.875 44.000 0.00 0.00 0.00 3.01
4276 4338 4.887071 TCTCTCTTGCTCTATGTCTTCTCC 59.113 45.833 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 0.307760 CACGCCACAAAACTCTGGTC 59.692 55.000 0.00 0.00 0.00 4.02
163 164 3.764434 GGAGGCTCTGAATATCATACGGA 59.236 47.826 15.23 0.00 0.00 4.69
254 262 0.399454 AGCGATGGCATAAGCTGGAT 59.601 50.000 23.53 5.40 43.41 3.41
369 381 1.634757 CGCACACGCAGCCTCATTTA 61.635 55.000 0.00 0.00 38.40 1.40
384 396 3.050275 GTTGGAGGGAGCACGCAC 61.050 66.667 0.36 0.00 0.00 5.34
467 485 0.739561 GTACGATGGCCGAGAAGTCT 59.260 55.000 0.00 0.00 41.76 3.24
537 558 4.298332 CAAGTAATTGGTGTTTGCTGGAC 58.702 43.478 0.00 0.00 0.00 4.02
542 563 4.305769 TGATGCAAGTAATTGGTGTTTGC 58.694 39.130 4.91 0.89 43.21 3.68
702 727 1.887707 CGGTAGATTTGCTCGCCCC 60.888 63.158 0.00 0.00 0.00 5.80
738 763 4.141367 CCTTTCTTAATTCCCTCCCTCCTC 60.141 50.000 0.00 0.00 0.00 3.71
739 764 3.788708 CCTTTCTTAATTCCCTCCCTCCT 59.211 47.826 0.00 0.00 0.00 3.69
740 765 3.528078 ACCTTTCTTAATTCCCTCCCTCC 59.472 47.826 0.00 0.00 0.00 4.30
742 767 4.814521 GCAACCTTTCTTAATTCCCTCCCT 60.815 45.833 0.00 0.00 0.00 4.20
743 768 3.447586 GCAACCTTTCTTAATTCCCTCCC 59.552 47.826 0.00 0.00 0.00 4.30
745 770 4.379499 CGTGCAACCTTTCTTAATTCCCTC 60.379 45.833 0.00 0.00 0.00 4.30
867 900 0.615331 GGATGTTGAGTGCAGAGGGA 59.385 55.000 0.00 0.00 0.00 4.20
868 901 0.617413 AGGATGTTGAGTGCAGAGGG 59.383 55.000 0.00 0.00 0.00 4.30
869 902 2.486472 AAGGATGTTGAGTGCAGAGG 57.514 50.000 0.00 0.00 0.00 3.69
873 906 3.809279 CGCATATAAGGATGTTGAGTGCA 59.191 43.478 0.00 0.00 0.00 4.57
913 950 2.292569 GGCAGCGTGCTACTAGTATGTA 59.707 50.000 2.33 0.00 44.28 2.29
914 951 1.067212 GGCAGCGTGCTACTAGTATGT 59.933 52.381 2.33 0.00 44.28 2.29
915 952 1.338337 AGGCAGCGTGCTACTAGTATG 59.662 52.381 2.33 0.00 44.28 2.39
917 954 2.336945 TAGGCAGCGTGCTACTAGTA 57.663 50.000 1.89 1.89 44.28 1.82
922 962 1.084370 CAGGTTAGGCAGCGTGCTAC 61.084 60.000 9.31 0.00 44.28 3.58
1107 1147 1.692519 AGCTTCACGTACCAGGAAAGT 59.307 47.619 0.00 0.00 0.00 2.66
1159 1201 5.357314 AGTTGAGAGCAATCAGAATTGGATG 59.643 40.000 0.79 0.00 42.18 3.51
1163 1205 5.624344 ACAGTTGAGAGCAATCAGAATTG 57.376 39.130 0.00 0.00 44.31 2.32
1261 1303 1.372997 TTCGTCGCAAGCTCTGACC 60.373 57.895 7.20 0.00 37.18 4.02
1277 1319 2.097466 CCGCCACACCATAATTGAGTTC 59.903 50.000 0.00 0.00 0.00 3.01
1323 1365 1.334054 CGACGACGACAAAGGTTAGG 58.666 55.000 0.00 0.00 42.66 2.69
2017 2062 4.329545 GCCCTCCTGTTGGCGTCA 62.330 66.667 0.00 0.00 38.00 4.35
2367 2418 0.179073 CGGCCGGAGTTTCAGATCAT 60.179 55.000 20.10 0.00 0.00 2.45
2512 2563 4.042934 AGCAAACCACTGGGACTAATAACT 59.957 41.667 0.00 0.00 38.05 2.24
2524 2575 2.957491 TTCAAACCAGCAAACCACTG 57.043 45.000 0.00 0.00 34.82 3.66
2562 2619 1.410517 CAGAATCGGCAGCTTCCTCTA 59.589 52.381 0.00 0.00 0.00 2.43
2585 2642 2.203451 GGGATGCTCCTGCCATGG 60.203 66.667 7.63 7.63 36.57 3.66
2725 2782 1.792301 CATCTGCTGCACGAACAGG 59.208 57.895 0.00 0.00 38.16 4.00
3061 3118 1.871772 CTCTTTGCTGTCCTTGCGG 59.128 57.895 0.00 0.00 0.00 5.69
3076 3133 3.780173 GCCCTGAAGCTCGGCTCT 61.780 66.667 6.79 0.00 38.25 4.09
3508 3565 1.061131 CGCGCTTGTTCTACTGAATGG 59.939 52.381 5.56 0.00 34.40 3.16
3551 3608 2.584835 ATCTTGGCAGTTGCTAACCA 57.415 45.000 3.88 0.00 41.70 3.67
3654 3711 3.763897 AGGACTTATGAACCAAACATGGC 59.236 43.478 0.00 0.00 0.00 4.40
3655 3712 5.590259 CCTAGGACTTATGAACCAAACATGG 59.410 44.000 1.05 0.00 0.00 3.66
3656 3713 6.316390 GTCCTAGGACTTATGAACCAAACATG 59.684 42.308 31.12 0.00 41.57 3.21
3657 3714 6.012858 TGTCCTAGGACTTATGAACCAAACAT 60.013 38.462 35.83 0.00 44.80 2.71
3658 3715 5.308497 TGTCCTAGGACTTATGAACCAAACA 59.692 40.000 35.83 13.71 44.80 2.83
3659 3716 5.801380 TGTCCTAGGACTTATGAACCAAAC 58.199 41.667 35.83 11.35 44.80 2.93
3660 3717 6.636454 ATGTCCTAGGACTTATGAACCAAA 57.364 37.500 35.83 16.33 44.80 3.28
3661 3718 6.636454 AATGTCCTAGGACTTATGAACCAA 57.364 37.500 35.83 16.81 44.80 3.67
3662 3719 6.636454 AAATGTCCTAGGACTTATGAACCA 57.364 37.500 35.83 17.54 44.80 3.67
3663 3720 7.939784 AAAAATGTCCTAGGACTTATGAACC 57.060 36.000 35.83 12.60 44.80 3.62
3684 3741 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
3685 3742 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
3686 3743 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
3687 3744 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
3688 3745 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
3689 3746 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
3690 3747 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
3691 3748 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
3692 3749 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
3693 3750 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
3694 3751 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
3695 3752 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
3696 3753 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
3697 3754 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
3698 3755 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
3699 3756 7.578458 ACTTTTTAGGGACTTGGGACTTATA 57.422 36.000 0.00 0.00 41.75 0.98
3700 3757 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
3701 3758 5.917545 ACTTTTTAGGGACTTGGGACTTA 57.082 39.130 0.00 0.00 41.75 2.24
3702 3759 4.808767 ACTTTTTAGGGACTTGGGACTT 57.191 40.909 0.00 0.00 41.75 3.01
3703 3760 4.447325 GGAACTTTTTAGGGACTTGGGACT 60.447 45.833 0.00 0.00 41.75 3.85
3704 3761 3.825014 GGAACTTTTTAGGGACTTGGGAC 59.175 47.826 0.00 0.00 41.75 4.46
3705 3762 3.725267 AGGAACTTTTTAGGGACTTGGGA 59.275 43.478 0.00 0.00 34.75 4.37
3706 3763 4.114015 AGGAACTTTTTAGGGACTTGGG 57.886 45.455 0.00 0.00 34.75 4.12
3707 3764 5.877491 AGTAGGAACTTTTTAGGGACTTGG 58.123 41.667 0.00 0.00 39.49 3.61
3708 3765 6.771267 ACAAGTAGGAACTTTTTAGGGACTTG 59.229 38.462 8.88 8.88 43.60 3.16
3709 3766 6.907961 ACAAGTAGGAACTTTTTAGGGACTT 58.092 36.000 0.00 0.00 43.60 3.01
3710 3767 6.511017 ACAAGTAGGAACTTTTTAGGGACT 57.489 37.500 0.00 0.00 43.60 3.85
3711 3768 7.578310 AAACAAGTAGGAACTTTTTAGGGAC 57.422 36.000 0.00 0.00 43.60 4.46
3712 3769 7.616542 ACAAAACAAGTAGGAACTTTTTAGGGA 59.383 33.333 0.00 0.00 43.60 4.20
3713 3770 7.778083 ACAAAACAAGTAGGAACTTTTTAGGG 58.222 34.615 0.00 0.00 43.60 3.53
3714 3771 9.647797 AAACAAAACAAGTAGGAACTTTTTAGG 57.352 29.630 0.00 0.00 43.60 2.69
3717 3774 9.203421 CAGAAACAAAACAAGTAGGAACTTTTT 57.797 29.630 0.00 0.00 43.60 1.94
3718 3775 7.817478 CCAGAAACAAAACAAGTAGGAACTTTT 59.183 33.333 0.00 0.00 43.60 2.27
3719 3776 7.320399 CCAGAAACAAAACAAGTAGGAACTTT 58.680 34.615 0.00 0.00 43.60 2.66
3721 3778 5.359860 CCCAGAAACAAAACAAGTAGGAACT 59.640 40.000 0.00 0.00 46.37 3.01
3722 3779 5.358725 TCCCAGAAACAAAACAAGTAGGAAC 59.641 40.000 0.00 0.00 0.00 3.62
3723 3780 5.358725 GTCCCAGAAACAAAACAAGTAGGAA 59.641 40.000 0.00 0.00 0.00 3.36
3724 3781 4.885325 GTCCCAGAAACAAAACAAGTAGGA 59.115 41.667 0.00 0.00 0.00 2.94
3725 3782 4.887655 AGTCCCAGAAACAAAACAAGTAGG 59.112 41.667 0.00 0.00 0.00 3.18
3726 3783 6.451064 AAGTCCCAGAAACAAAACAAGTAG 57.549 37.500 0.00 0.00 0.00 2.57
3727 3784 7.393796 TGTTAAGTCCCAGAAACAAAACAAGTA 59.606 33.333 0.00 0.00 0.00 2.24
3728 3785 6.209788 TGTTAAGTCCCAGAAACAAAACAAGT 59.790 34.615 0.00 0.00 0.00 3.16
3729 3786 6.626302 TGTTAAGTCCCAGAAACAAAACAAG 58.374 36.000 0.00 0.00 0.00 3.16
3730 3787 6.591750 TGTTAAGTCCCAGAAACAAAACAA 57.408 33.333 0.00 0.00 0.00 2.83
3731 3788 6.406400 CCATGTTAAGTCCCAGAAACAAAACA 60.406 38.462 0.00 0.00 35.63 2.83
3732 3789 5.983118 CCATGTTAAGTCCCAGAAACAAAAC 59.017 40.000 0.00 0.00 35.63 2.43
3733 3790 5.894393 TCCATGTTAAGTCCCAGAAACAAAA 59.106 36.000 0.00 0.00 35.63 2.44
3734 3791 5.300792 GTCCATGTTAAGTCCCAGAAACAAA 59.699 40.000 0.00 0.00 35.63 2.83
3735 3792 4.825085 GTCCATGTTAAGTCCCAGAAACAA 59.175 41.667 0.00 0.00 35.63 2.83
3736 3793 4.104102 AGTCCATGTTAAGTCCCAGAAACA 59.896 41.667 0.00 0.00 36.37 2.83
3737 3794 4.652822 AGTCCATGTTAAGTCCCAGAAAC 58.347 43.478 0.00 0.00 0.00 2.78
3738 3795 4.993705 AGTCCATGTTAAGTCCCAGAAA 57.006 40.909 0.00 0.00 0.00 2.52
3739 3796 6.442541 TTTAGTCCATGTTAAGTCCCAGAA 57.557 37.500 0.00 0.00 0.00 3.02
3740 3797 6.271391 TCTTTTAGTCCATGTTAAGTCCCAGA 59.729 38.462 0.00 0.00 0.00 3.86
3741 3798 6.371825 GTCTTTTAGTCCATGTTAAGTCCCAG 59.628 42.308 0.00 0.00 0.00 4.45
3742 3799 6.235664 GTCTTTTAGTCCATGTTAAGTCCCA 58.764 40.000 0.00 0.00 0.00 4.37
3743 3800 5.646793 GGTCTTTTAGTCCATGTTAAGTCCC 59.353 44.000 0.00 0.00 0.00 4.46
3744 3801 6.235664 TGGTCTTTTAGTCCATGTTAAGTCC 58.764 40.000 0.00 0.00 28.55 3.85
3745 3802 7.923414 ATGGTCTTTTAGTCCATGTTAAGTC 57.077 36.000 4.95 0.00 41.46 3.01
3746 3803 9.975218 AATATGGTCTTTTAGTCCATGTTAAGT 57.025 29.630 13.41 0.00 42.62 2.24
3750 3807 9.747898 TTGTAATATGGTCTTTTAGTCCATGTT 57.252 29.630 15.13 15.13 42.62 2.71
3751 3808 9.174166 GTTGTAATATGGTCTTTTAGTCCATGT 57.826 33.333 13.41 6.18 42.62 3.21
3752 3809 9.396022 AGTTGTAATATGGTCTTTTAGTCCATG 57.604 33.333 13.41 0.00 42.62 3.66
3762 3819 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
3773 3830 9.577222 GAGAGTCTTATAGGGACTTATAGTTGT 57.423 37.037 10.43 0.00 43.13 3.32
3774 3831 9.016438 GGAGAGTCTTATAGGGACTTATAGTTG 57.984 40.741 10.43 0.00 43.13 3.16
3775 3832 8.962205 AGGAGAGTCTTATAGGGACTTATAGTT 58.038 37.037 10.43 0.00 43.13 2.24
3776 3833 8.528543 AGGAGAGTCTTATAGGGACTTATAGT 57.471 38.462 10.43 0.00 43.13 2.12
3777 3834 9.238368 CAAGGAGAGTCTTATAGGGACTTATAG 57.762 40.741 10.43 0.00 43.13 1.31
3778 3835 8.956860 TCAAGGAGAGTCTTATAGGGACTTATA 58.043 37.037 10.43 0.00 43.13 0.98
3779 3836 7.827787 TCAAGGAGAGTCTTATAGGGACTTAT 58.172 38.462 10.43 4.90 43.13 1.73
3780 3837 7.129038 TCTCAAGGAGAGTCTTATAGGGACTTA 59.871 40.741 10.43 0.00 43.13 2.24
3781 3838 6.068735 TCTCAAGGAGAGTCTTATAGGGACTT 60.069 42.308 10.43 3.61 43.13 3.01
3782 3839 5.433712 TCTCAAGGAGAGTCTTATAGGGACT 59.566 44.000 9.30 9.30 45.37 3.85
3783 3840 5.697067 TCTCAAGGAGAGTCTTATAGGGAC 58.303 45.833 0.00 0.00 44.98 4.46
3784 3841 5.996271 TCTCAAGGAGAGTCTTATAGGGA 57.004 43.478 0.00 0.00 44.98 4.20
3810 3867 5.126222 TGCGCATTTGGGACTTATGAAATAA 59.874 36.000 5.66 0.00 36.20 1.40
3811 3868 4.642437 TGCGCATTTGGGACTTATGAAATA 59.358 37.500 5.66 0.00 0.00 1.40
3812 3869 3.446873 TGCGCATTTGGGACTTATGAAAT 59.553 39.130 5.66 0.00 0.00 2.17
3813 3870 2.822561 TGCGCATTTGGGACTTATGAAA 59.177 40.909 5.66 0.00 0.00 2.69
3814 3871 2.163412 GTGCGCATTTGGGACTTATGAA 59.837 45.455 15.91 0.00 0.00 2.57
3815 3872 1.742831 GTGCGCATTTGGGACTTATGA 59.257 47.619 15.91 0.00 0.00 2.15
3816 3873 1.745087 AGTGCGCATTTGGGACTTATG 59.255 47.619 15.91 0.00 0.00 1.90
3817 3874 2.128771 AGTGCGCATTTGGGACTTAT 57.871 45.000 15.91 0.00 0.00 1.73
3818 3875 1.904287 AAGTGCGCATTTGGGACTTA 58.096 45.000 18.03 0.00 31.84 2.24
3819 3876 1.039856 AAAGTGCGCATTTGGGACTT 58.960 45.000 19.44 10.07 33.47 3.01
3820 3877 1.904287 TAAAGTGCGCATTTGGGACT 58.096 45.000 19.44 3.51 0.00 3.85
3821 3878 2.030274 ACTTAAAGTGCGCATTTGGGAC 60.030 45.455 19.44 0.77 0.00 4.46
3822 3879 2.227865 GACTTAAAGTGCGCATTTGGGA 59.772 45.455 19.44 5.04 0.00 4.37
3823 3880 2.595386 GACTTAAAGTGCGCATTTGGG 58.405 47.619 19.44 13.65 0.00 4.12
3824 3881 2.595386 GGACTTAAAGTGCGCATTTGG 58.405 47.619 19.44 13.97 0.00 3.28
3825 3882 2.228822 AGGGACTTAAAGTGCGCATTTG 59.771 45.455 19.44 9.27 37.44 2.32
3826 3883 2.514803 AGGGACTTAAAGTGCGCATTT 58.485 42.857 15.91 14.23 37.44 2.32
3827 3884 2.200373 AGGGACTTAAAGTGCGCATT 57.800 45.000 15.91 6.43 37.44 3.56
3828 3885 3.560636 ATAGGGACTTAAAGTGCGCAT 57.439 42.857 15.91 0.00 41.75 4.73
3829 3886 4.081309 ACTTATAGGGACTTAAAGTGCGCA 60.081 41.667 5.66 5.66 39.58 6.09
3830 3887 4.439968 ACTTATAGGGACTTAAAGTGCGC 58.560 43.478 0.00 0.00 39.58 6.09
3831 3888 5.048507 GGACTTATAGGGACTTAAAGTGCG 58.951 45.833 0.00 0.00 40.60 5.34
3832 3889 5.130643 AGGGACTTATAGGGACTTAAAGTGC 59.869 44.000 0.00 0.00 43.84 4.40
3833 3890 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
3834 3891 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
3835 3892 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
3836 3893 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
3837 3894 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
3838 3895 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
3839 3896 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
3840 3897 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
3841 3898 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
3842 3899 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
3843 3900 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
3844 3901 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
3845 3902 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
3846 3903 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
3847 3904 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
3848 3905 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
3849 3906 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
3851 3908 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
3852 3909 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
3853 3910 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
3854 3911 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
3855 3912 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
3856 3913 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
3857 3914 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
3858 3915 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
3859 3916 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
3860 3917 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
3861 3918 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
3862 3919 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
3863 3920 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
3864 3921 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
3865 3922 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
3866 3923 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
3867 3924 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
3869 3926 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
3889 3946 9.081204 GGACTTATTGGTTTAGGGACTTAAAAA 57.919 33.333 0.00 0.00 41.75 1.94
3890 3947 7.670979 GGGACTTATTGGTTTAGGGACTTAAAA 59.329 37.037 0.00 0.00 41.75 1.52
3891 3948 7.018851 AGGGACTTATTGGTTTAGGGACTTAAA 59.981 37.037 0.00 0.00 34.75 1.52
3892 3949 6.506413 AGGGACTTATTGGTTTAGGGACTTAA 59.494 38.462 0.00 0.00 34.75 1.85
3893 3950 6.034003 AGGGACTTATTGGTTTAGGGACTTA 58.966 40.000 0.00 0.00 34.75 2.24
3894 3951 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
3895 3952 4.227527 CAGGGACTTATTGGTTTAGGGACT 59.772 45.833 0.00 0.00 39.39 3.85
3896 3953 4.226620 TCAGGGACTTATTGGTTTAGGGAC 59.773 45.833 0.00 0.00 34.60 4.46
3897 3954 4.440808 TCAGGGACTTATTGGTTTAGGGA 58.559 43.478 0.00 0.00 34.60 4.20
3898 3955 4.855298 TCAGGGACTTATTGGTTTAGGG 57.145 45.455 0.00 0.00 34.60 3.53
3899 3956 6.492087 TGTTTTCAGGGACTTATTGGTTTAGG 59.508 38.462 0.00 0.00 34.60 2.69
3900 3957 7.519032 TGTTTTCAGGGACTTATTGGTTTAG 57.481 36.000 0.00 0.00 34.60 1.85
3901 3958 7.899648 TTGTTTTCAGGGACTTATTGGTTTA 57.100 32.000 0.00 0.00 34.60 2.01
3902 3959 6.800072 TTGTTTTCAGGGACTTATTGGTTT 57.200 33.333 0.00 0.00 34.60 3.27
3903 3960 6.155393 TGTTTGTTTTCAGGGACTTATTGGTT 59.845 34.615 0.00 0.00 34.60 3.67
3904 3961 5.659079 TGTTTGTTTTCAGGGACTTATTGGT 59.341 36.000 0.00 0.00 34.60 3.67
3905 3962 5.983118 GTGTTTGTTTTCAGGGACTTATTGG 59.017 40.000 0.00 0.00 34.60 3.16
3906 3963 5.983118 GGTGTTTGTTTTCAGGGACTTATTG 59.017 40.000 0.00 0.00 34.60 1.90
3907 3964 5.069914 GGGTGTTTGTTTTCAGGGACTTATT 59.930 40.000 0.00 0.00 34.60 1.40
3908 3965 4.587262 GGGTGTTTGTTTTCAGGGACTTAT 59.413 41.667 0.00 0.00 34.60 1.73
3909 3966 3.955551 GGGTGTTTGTTTTCAGGGACTTA 59.044 43.478 0.00 0.00 34.60 2.24
3910 3967 2.764010 GGGTGTTTGTTTTCAGGGACTT 59.236 45.455 0.00 0.00 34.60 3.01
3911 3968 2.024369 AGGGTGTTTGTTTTCAGGGACT 60.024 45.455 0.00 0.00 43.88 3.85
3912 3969 2.361119 GAGGGTGTTTGTTTTCAGGGAC 59.639 50.000 0.00 0.00 0.00 4.46
3913 3970 2.243736 AGAGGGTGTTTGTTTTCAGGGA 59.756 45.455 0.00 0.00 0.00 4.20
3914 3971 2.666317 AGAGGGTGTTTGTTTTCAGGG 58.334 47.619 0.00 0.00 0.00 4.45
3915 3972 4.887655 ACTAAGAGGGTGTTTGTTTTCAGG 59.112 41.667 0.00 0.00 0.00 3.86
3916 3973 6.451064 AACTAAGAGGGTGTTTGTTTTCAG 57.549 37.500 0.00 0.00 0.00 3.02
3917 3974 6.844097 AAACTAAGAGGGTGTTTGTTTTCA 57.156 33.333 0.00 0.00 31.57 2.69
3918 3975 8.245491 TGTAAAACTAAGAGGGTGTTTGTTTTC 58.755 33.333 10.67 6.08 40.00 2.29
3919 3976 8.030692 GTGTAAAACTAAGAGGGTGTTTGTTTT 58.969 33.333 11.60 11.60 41.98 2.43
3920 3977 7.395206 AGTGTAAAACTAAGAGGGTGTTTGTTT 59.605 33.333 0.00 0.00 37.36 2.83
3921 3978 6.888088 AGTGTAAAACTAAGAGGGTGTTTGTT 59.112 34.615 0.00 0.00 37.36 2.83
3922 3979 6.420638 AGTGTAAAACTAAGAGGGTGTTTGT 58.579 36.000 0.00 0.00 37.36 2.83
3923 3980 6.937436 AGTGTAAAACTAAGAGGGTGTTTG 57.063 37.500 0.00 0.00 37.36 2.93
3924 3981 7.949690 AAAGTGTAAAACTAAGAGGGTGTTT 57.050 32.000 0.00 0.00 38.56 2.83
3925 3982 7.228108 GCTAAAGTGTAAAACTAAGAGGGTGTT 59.772 37.037 0.00 0.00 38.56 3.32
3926 3983 6.709397 GCTAAAGTGTAAAACTAAGAGGGTGT 59.291 38.462 0.00 0.00 38.56 4.16
3927 3984 6.935208 AGCTAAAGTGTAAAACTAAGAGGGTG 59.065 38.462 0.00 0.00 38.56 4.61
3928 3985 7.075851 AGCTAAAGTGTAAAACTAAGAGGGT 57.924 36.000 0.00 0.00 38.56 4.34
3929 3986 8.092687 TGTAGCTAAAGTGTAAAACTAAGAGGG 58.907 37.037 0.00 0.00 38.56 4.30
3930 3987 9.654663 ATGTAGCTAAAGTGTAAAACTAAGAGG 57.345 33.333 0.00 0.00 38.56 3.69
3957 4014 7.042791 CCAAAATTTAAAACTCACGCAACTGAT 60.043 33.333 0.00 0.00 0.00 2.90
3961 4018 6.035112 TGACCAAAATTTAAAACTCACGCAAC 59.965 34.615 0.00 0.00 0.00 4.17
3966 4023 7.190871 TCGACTGACCAAAATTTAAAACTCAC 58.809 34.615 0.00 0.00 0.00 3.51
3999 4056 1.909700 ACAAAGCATGATCCAACGGT 58.090 45.000 0.00 0.00 0.00 4.83
4024 4081 7.093509 ACACCCAGAGAAAAAGTTAAAACACAT 60.094 33.333 0.00 0.00 0.00 3.21
4034 4091 4.339247 CACAATCACACCCAGAGAAAAAGT 59.661 41.667 0.00 0.00 0.00 2.66
4035 4092 4.261741 CCACAATCACACCCAGAGAAAAAG 60.262 45.833 0.00 0.00 0.00 2.27
4041 4098 0.037303 AGCCACAATCACACCCAGAG 59.963 55.000 0.00 0.00 0.00 3.35
4042 4099 0.250858 CAGCCACAATCACACCCAGA 60.251 55.000 0.00 0.00 0.00 3.86
4046 4103 1.032014 AACACAGCCACAATCACACC 58.968 50.000 0.00 0.00 0.00 4.16
4049 4106 0.314935 CCCAACACAGCCACAATCAC 59.685 55.000 0.00 0.00 0.00 3.06
4088 4147 5.683681 AGCAAATTGACTGACCCAAAATTT 58.316 33.333 0.00 0.00 32.20 1.82
4104 4163 1.620822 ACGAGCCCAAGAAGCAAATT 58.379 45.000 0.00 0.00 0.00 1.82
4105 4164 1.270550 CAACGAGCCCAAGAAGCAAAT 59.729 47.619 0.00 0.00 0.00 2.32
4106 4165 0.667993 CAACGAGCCCAAGAAGCAAA 59.332 50.000 0.00 0.00 0.00 3.68
4107 4166 1.795170 GCAACGAGCCCAAGAAGCAA 61.795 55.000 0.00 0.00 37.23 3.91
4108 4167 2.260869 GCAACGAGCCCAAGAAGCA 61.261 57.895 0.00 0.00 37.23 3.91
4109 4168 2.563427 GCAACGAGCCCAAGAAGC 59.437 61.111 0.00 0.00 37.23 3.86
4110 4169 2.680913 CCGCAACGAGCCCAAGAAG 61.681 63.158 0.00 0.00 41.38 2.85
4111 4170 2.668212 CCGCAACGAGCCCAAGAA 60.668 61.111 0.00 0.00 41.38 2.52
4131 4190 0.674534 AACGGGTCCTCGAGCATATC 59.325 55.000 6.99 0.00 0.00 1.63
4132 4191 1.991121 TAACGGGTCCTCGAGCATAT 58.009 50.000 6.99 0.00 0.00 1.78
4142 4204 2.223994 GGCTCAGTAGATTAACGGGTCC 60.224 54.545 0.00 0.00 0.00 4.46
4171 4233 3.822192 CGATCCACCTCCGCGACA 61.822 66.667 8.23 0.00 0.00 4.35
4172 4234 3.753070 GACGATCCACCTCCGCGAC 62.753 68.421 8.23 0.00 0.00 5.19
4176 4238 2.049475 GACGAGACGATCCACCTCCG 62.049 65.000 0.00 0.00 0.00 4.63
4227 4289 2.125350 CAGAGGAGGCGAAGTGGC 60.125 66.667 0.00 0.00 45.27 5.01
4228 4290 0.390472 GAACAGAGGAGGCGAAGTGG 60.390 60.000 0.00 0.00 0.00 4.00
4235 4297 0.109039 GAGTGACGAACAGAGGAGGC 60.109 60.000 0.00 0.00 0.00 4.70
4249 4311 4.854173 AGACATAGAGCAAGAGAGAGTGA 58.146 43.478 0.00 0.00 0.00 3.41
4257 4319 4.865905 AGAGGAGAAGACATAGAGCAAGA 58.134 43.478 0.00 0.00 0.00 3.02
4260 4322 3.561143 GGAGAGGAGAAGACATAGAGCA 58.439 50.000 0.00 0.00 0.00 4.26
4272 4334 1.539165 CTCGGATGGGGAGAGGAGA 59.461 63.158 0.00 0.00 33.27 3.71
4276 4338 0.897863 CCTAGCTCGGATGGGGAGAG 60.898 65.000 0.00 0.00 33.27 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.