Multiple sequence alignment - TraesCS2D01G197300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G197300 chr2D 100.000 5321 0 0 1 5321 144440973 144446293 0.000000e+00 9827
1 TraesCS2D01G197300 chr2B 92.705 4085 210 40 1297 5318 202482527 202486586 0.000000e+00 5812
2 TraesCS2D01G197300 chr2B 90.805 1218 43 25 40 1219 202481305 202482491 0.000000e+00 1565
3 TraesCS2D01G197300 chr2A 90.937 3222 146 59 4 3158 157473152 157470010 0.000000e+00 4198
4 TraesCS2D01G197300 chr2A 91.193 1408 77 17 3378 4739 157469563 157468157 0.000000e+00 1869
5 TraesCS2D01G197300 chr2A 88.347 472 49 2 4850 5321 157457349 157456884 3.600000e-156 562
6 TraesCS2D01G197300 chr2A 87.984 258 11 7 3149 3392 157469860 157469609 2.430000e-73 287
7 TraesCS2D01G197300 chr4B 88.614 202 23 0 4631 4832 450474529 450474730 4.120000e-61 246
8 TraesCS2D01G197300 chr7B 88.614 202 22 1 4631 4832 445020176 445020376 1.480000e-60 244
9 TraesCS2D01G197300 chr6D 88.725 204 17 2 4629 4832 269701494 269701691 1.480000e-60 244
10 TraesCS2D01G197300 chr6B 88.350 206 18 1 4627 4832 422320833 422321032 5.320000e-60 243
11 TraesCS2D01G197300 chr3A 87.081 209 25 2 4624 4832 49633547 49633341 8.910000e-58 235
12 TraesCS2D01G197300 chr1D 87.624 202 25 0 4631 4832 189175267 189175066 8.910000e-58 235
13 TraesCS2D01G197300 chr5A 87.437 199 25 0 4634 4832 177194023 177193825 4.150000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G197300 chr2D 144440973 144446293 5320 False 9827.0 9827 100.000 1 5321 1 chr2D.!!$F1 5320
1 TraesCS2D01G197300 chr2B 202481305 202486586 5281 False 3688.5 5812 91.755 40 5318 2 chr2B.!!$F1 5278
2 TraesCS2D01G197300 chr2A 157468157 157473152 4995 True 2118.0 4198 90.038 4 4739 3 chr2A.!!$R2 4735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
562 595 0.313043 GGCGGGAGATCGACGATTTA 59.687 55.000 12.40 0.00 0.00 1.40 F
1168 1234 0.596083 CGCGCTTGATCCTCCTGTAG 60.596 60.000 5.56 0.00 0.00 2.74 F
1170 1236 0.749649 CGCTTGATCCTCCTGTAGCT 59.250 55.000 0.00 0.00 0.00 3.32 F
1171 1237 1.137872 CGCTTGATCCTCCTGTAGCTT 59.862 52.381 0.00 0.00 0.00 3.74 F
1278 1347 1.294780 GTGAGCAGCTAGTGTGCCT 59.705 57.895 13.70 4.05 42.24 4.75 F
3173 3451 1.144298 TGATCCATTGGGCATCTGGAG 59.856 52.381 2.09 0.00 42.10 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 1555 0.105453 GACAGGAGGCCCTATCAGGA 60.105 60.000 0.0 0.0 42.02 3.86 R
2213 2313 2.279935 AAATTACCCACAACGAGCCA 57.720 45.000 0.0 0.0 0.00 4.75 R
3116 3231 2.752903 GTGTCGTTTGGCCCTATGAAAT 59.247 45.455 0.0 0.0 0.00 2.17 R
3133 3252 4.171005 TCAAATCGTATGGAAGACGTGTC 58.829 43.478 0.0 0.0 41.11 3.67 R
3204 3482 2.684881 CCAGTTGTTGCTTGTGACTCTT 59.315 45.455 0.0 0.0 0.00 2.85 R
4659 5077 0.028110 GCATTTCTCGGAATCGCCAC 59.972 55.000 0.0 0.0 35.94 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.974060 TTTAATTCTTAGACTTTGACACTGGT 57.026 30.769 0.00 0.00 0.00 4.00
29 30 6.867662 AATTCTTAGACTTTGACACTGGTG 57.132 37.500 0.00 0.00 0.00 4.17
31 32 5.353394 TCTTAGACTTTGACACTGGTGTT 57.647 39.130 7.82 0.00 45.05 3.32
32 33 5.741011 TCTTAGACTTTGACACTGGTGTTT 58.259 37.500 7.82 0.00 45.05 2.83
33 34 6.880484 TCTTAGACTTTGACACTGGTGTTTA 58.120 36.000 7.82 0.00 45.05 2.01
34 35 7.506114 TCTTAGACTTTGACACTGGTGTTTAT 58.494 34.615 7.82 0.00 45.05 1.40
35 36 8.644216 TCTTAGACTTTGACACTGGTGTTTATA 58.356 33.333 7.82 0.00 45.05 0.98
36 37 9.436957 CTTAGACTTTGACACTGGTGTTTATAT 57.563 33.333 7.82 0.00 45.05 0.86
37 38 9.787435 TTAGACTTTGACACTGGTGTTTATATT 57.213 29.630 7.82 0.00 45.05 1.28
38 39 8.691661 AGACTTTGACACTGGTGTTTATATTT 57.308 30.769 7.82 0.00 45.05 1.40
250 261 1.134280 CATCACCTCTTTCCCGCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
256 267 0.749091 TCTTTCCCGCAGATGGCATG 60.749 55.000 3.81 0.00 45.17 4.06
551 584 1.252215 TTGATACGTGTGGCGGGAGA 61.252 55.000 0.00 0.00 46.52 3.71
562 595 0.313043 GGCGGGAGATCGACGATTTA 59.687 55.000 12.40 0.00 0.00 1.40
608 643 4.404654 GCCAAGTCCAAAGCCGCG 62.405 66.667 0.00 0.00 0.00 6.46
993 1039 3.500299 GTCCACTTGCTTCTTCTTCTTCC 59.500 47.826 0.00 0.00 0.00 3.46
1150 1216 3.545124 TACAGGGTGCAAGGTGCCG 62.545 63.158 0.00 0.00 44.23 5.69
1165 1231 2.587194 CCGCGCTTGATCCTCCTG 60.587 66.667 5.56 0.00 0.00 3.86
1167 1233 1.437573 CGCGCTTGATCCTCCTGTA 59.562 57.895 5.56 0.00 0.00 2.74
1168 1234 0.596083 CGCGCTTGATCCTCCTGTAG 60.596 60.000 5.56 0.00 0.00 2.74
1169 1235 0.878086 GCGCTTGATCCTCCTGTAGC 60.878 60.000 0.00 0.00 0.00 3.58
1170 1236 0.749649 CGCTTGATCCTCCTGTAGCT 59.250 55.000 0.00 0.00 0.00 3.32
1171 1237 1.137872 CGCTTGATCCTCCTGTAGCTT 59.862 52.381 0.00 0.00 0.00 3.74
1176 1242 4.207891 TGATCCTCCTGTAGCTTGTTTC 57.792 45.455 0.00 0.00 0.00 2.78
1219 1288 1.955157 CATGCGCTAGCTGCCTCTC 60.955 63.158 22.62 2.82 45.42 3.20
1220 1289 2.429767 ATGCGCTAGCTGCCTCTCA 61.430 57.895 22.62 9.18 45.42 3.27
1221 1290 2.279385 GCGCTAGCTGCCTCTCAG 60.279 66.667 13.93 0.00 45.62 3.35
1222 1291 2.416678 CGCTAGCTGCCTCTCAGG 59.583 66.667 13.93 0.00 43.06 3.86
1231 1300 4.154347 CCTCTCAGGCACGGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
1232 1301 4.504916 CTCTCAGGCACGGCTCCG 62.505 72.222 6.79 6.79 46.03 4.63
1234 1303 4.504916 CTCAGGCACGGCTCCGAG 62.505 72.222 15.95 8.42 42.83 4.63
1236 1305 4.504916 CAGGCACGGCTCCGAGAG 62.505 72.222 15.95 5.66 42.83 3.20
1278 1347 1.294780 GTGAGCAGCTAGTGTGCCT 59.705 57.895 13.70 4.05 42.24 4.75
1291 1360 3.940480 TGCCTCCTGGTCTGGGGA 61.940 66.667 0.00 0.00 35.27 4.81
1293 1362 2.231380 GCCTCCTGGTCTGGGGAAA 61.231 63.158 0.00 0.00 35.27 3.13
1298 1367 1.304464 CTGGTCTGGGGAAAAGGGC 60.304 63.158 0.00 0.00 0.00 5.19
1320 1394 2.101082 CTGAGATTGCTCTGCTCTGCTA 59.899 50.000 0.00 0.00 41.84 3.49
1361 1438 2.049228 GACGGTGACTTGTTAGTGTCG 58.951 52.381 0.00 0.00 36.10 4.35
1362 1439 1.406539 ACGGTGACTTGTTAGTGTCGT 59.593 47.619 0.00 0.00 36.10 4.34
1363 1440 2.049228 CGGTGACTTGTTAGTGTCGTC 58.951 52.381 0.00 0.00 36.10 4.20
1474 1555 4.159879 AGGAGTACGAAAGAATTGACCGAT 59.840 41.667 0.00 0.00 0.00 4.18
1542 1623 8.492748 CAATTGAATGAACTTGGTGAGAATTTG 58.507 33.333 0.00 0.00 0.00 2.32
1544 1625 6.506147 TGAATGAACTTGGTGAGAATTTGTG 58.494 36.000 0.00 0.00 0.00 3.33
1606 1689 3.189287 AGCAATGTGGTCAGAAATCGTTC 59.811 43.478 0.00 0.00 0.00 3.95
1713 1796 4.315803 TCCAGATTCCGAGAACTTTTGTC 58.684 43.478 0.00 0.00 0.00 3.18
1751 1834 2.360350 CGCCCTTGTCCAGCATGT 60.360 61.111 0.00 0.00 0.00 3.21
2028 2122 6.128418 GGTTGTTCTTCTTCTGATGCTAAGAC 60.128 42.308 0.00 0.00 31.62 3.01
2033 2127 6.524734 TCTTCTTCTGATGCTAAGACACAAA 58.475 36.000 0.00 0.00 31.62 2.83
2040 2138 5.005740 TGATGCTAAGACACAAAAGATGCT 58.994 37.500 0.00 0.00 0.00 3.79
2213 2313 6.015180 ACACCTGCATTTCAGTTATTTCACAT 60.015 34.615 0.00 0.00 41.25 3.21
2281 2385 1.334689 CGAGACGTGTGTGTGCTCTAA 60.335 52.381 0.00 0.00 0.00 2.10
2312 2417 4.680110 ACTGTTGATCTGTTCTCGTTTACG 59.320 41.667 0.00 0.00 41.45 3.18
2428 2539 4.396478 GCTTCCTTCTTCCCTGAATTGTAC 59.604 45.833 0.00 0.00 0.00 2.90
2430 2541 3.055385 TCCTTCTTCCCTGAATTGTACCG 60.055 47.826 0.00 0.00 0.00 4.02
2442 2553 5.996644 TGAATTGTACCGAATTCCCTACAT 58.003 37.500 13.31 0.00 40.31 2.29
2450 2561 8.872134 TGTACCGAATTCCCTACATTAATGATA 58.128 33.333 22.16 9.45 0.00 2.15
2572 2683 1.953311 GCGGTTTCTAAGATTGGCCCA 60.953 52.381 0.00 0.00 0.00 5.36
2874 2986 5.656213 AAATAATGAGCTGCTTCTGCTTT 57.344 34.783 2.53 0.00 38.70 3.51
2877 2989 6.764308 ATAATGAGCTGCTTCTGCTTTTAA 57.236 33.333 2.53 0.00 38.70 1.52
2879 2991 3.480470 TGAGCTGCTTCTGCTTTTAACT 58.520 40.909 2.53 0.00 38.70 2.24
2881 2993 4.023707 TGAGCTGCTTCTGCTTTTAACTTC 60.024 41.667 2.53 0.00 38.70 3.01
2882 2994 3.058639 AGCTGCTTCTGCTTTTAACTTCG 60.059 43.478 0.00 0.00 35.17 3.79
2883 2995 3.304057 GCTGCTTCTGCTTTTAACTTCGT 60.304 43.478 0.00 0.00 40.48 3.85
2884 2996 4.084013 GCTGCTTCTGCTTTTAACTTCGTA 60.084 41.667 0.00 0.00 40.48 3.43
2885 2997 5.390991 GCTGCTTCTGCTTTTAACTTCGTAT 60.391 40.000 0.00 0.00 40.48 3.06
2889 3001 7.589954 TGCTTCTGCTTTTAACTTCGTATTTTC 59.410 33.333 0.00 0.00 40.48 2.29
2890 3002 7.201157 GCTTCTGCTTTTAACTTCGTATTTTCG 60.201 37.037 0.00 0.00 36.03 3.46
2891 3003 7.410800 TCTGCTTTTAACTTCGTATTTTCGA 57.589 32.000 0.00 0.00 38.08 3.71
2892 3004 7.285788 TCTGCTTTTAACTTCGTATTTTCGAC 58.714 34.615 0.00 0.00 39.58 4.20
2893 3005 6.066410 TGCTTTTAACTTCGTATTTTCGACG 58.934 36.000 0.00 0.00 39.58 5.12
2903 3018 5.659426 TCGTATTTTCGACGAGACAAAAAC 58.341 37.500 0.00 0.00 43.99 2.43
2914 3029 7.223193 TCGACGAGACAAAAACTCATCTTTTTA 59.777 33.333 0.00 0.00 32.66 1.52
3087 3202 3.052490 AGGAGGCTTCTCATACAGGTACT 60.052 47.826 0.00 0.00 39.23 2.73
3107 3222 9.143155 AGGTACTGAAATAAGAAAATTGGTTGT 57.857 29.630 0.00 0.00 37.18 3.32
3113 3228 8.696374 TGAAATAAGAAAATTGGTTGTGTGGTA 58.304 29.630 0.00 0.00 0.00 3.25
3114 3229 9.191995 GAAATAAGAAAATTGGTTGTGTGGTAG 57.808 33.333 0.00 0.00 0.00 3.18
3115 3230 7.833285 ATAAGAAAATTGGTTGTGTGGTAGT 57.167 32.000 0.00 0.00 0.00 2.73
3116 3231 8.927675 ATAAGAAAATTGGTTGTGTGGTAGTA 57.072 30.769 0.00 0.00 0.00 1.82
3133 3252 4.514066 GGTAGTATTTCATAGGGCCAAACG 59.486 45.833 6.18 0.00 0.00 3.60
3173 3451 1.144298 TGATCCATTGGGCATCTGGAG 59.856 52.381 2.09 0.00 42.10 3.86
3231 3509 3.125316 CACAAGCAACAACTGGAAATGG 58.875 45.455 0.00 0.00 0.00 3.16
3300 3606 6.701841 CCATGTATAACAGATAGTGGTGTCAC 59.298 42.308 0.00 0.00 43.93 3.67
3313 3619 2.361757 TGGTGTCACATGCTTTTCCTTG 59.638 45.455 5.12 0.00 0.00 3.61
3349 3655 1.419012 TGCTCCCATCCTCATGTCATC 59.581 52.381 0.00 0.00 0.00 2.92
3350 3656 1.419012 GCTCCCATCCTCATGTCATCA 59.581 52.381 0.00 0.00 0.00 3.07
3351 3657 2.040012 GCTCCCATCCTCATGTCATCAT 59.960 50.000 0.00 0.00 34.21 2.45
3362 3668 7.890515 TCCTCATGTCATCATAACTCATACTC 58.109 38.462 0.00 0.00 32.47 2.59
3394 3760 6.853872 GTGAATAGATAGAGTACTGTTCAGCG 59.146 42.308 0.00 0.00 41.92 5.18
3593 3963 0.602905 CCGTGGTGGAGAAGGTCAAC 60.603 60.000 0.00 0.00 42.00 3.18
3636 4006 2.300967 GGCCCACCAGAGGATGACA 61.301 63.158 0.00 0.00 35.26 3.58
3713 4083 0.332632 TGGATGCCAAGGAGAAAGGG 59.667 55.000 0.00 0.00 0.00 3.95
3768 4138 1.718757 CCTTATCTGGCCGTTGCTGC 61.719 60.000 0.00 0.00 37.74 5.25
3986 4385 3.229293 TGGATGCTCATTGTTTGTGGAA 58.771 40.909 0.00 0.00 0.00 3.53
4116 4515 0.474273 TTCCCCTTCCAGGTACCGTT 60.474 55.000 6.18 0.00 31.93 4.44
4117 4516 0.474273 TCCCCTTCCAGGTACCGTTT 60.474 55.000 6.18 0.00 31.93 3.60
4118 4517 0.322187 CCCCTTCCAGGTACCGTTTG 60.322 60.000 6.18 0.00 31.93 2.93
4209 4618 0.463474 GTCTCTCTGGATTGCAGGGC 60.463 60.000 5.27 0.00 0.00 5.19
4380 4789 4.005650 ACGAGTACGGTGTAGAGAATTCA 58.994 43.478 8.44 0.00 44.46 2.57
4519 4937 1.071605 GTTGCCTCTACTGTTCTGCG 58.928 55.000 0.00 0.00 0.00 5.18
4528 4946 2.023771 CTGTTCTGCGCGCTTCTCA 61.024 57.895 33.29 22.69 0.00 3.27
4530 4948 0.108851 TGTTCTGCGCGCTTCTCATA 60.109 50.000 33.29 8.98 0.00 2.15
4533 4951 0.248661 TCTGCGCGCTTCTCATAGAC 60.249 55.000 33.29 0.00 0.00 2.59
4552 4970 2.277084 ACGATGAAATGCCGTAGAACC 58.723 47.619 0.00 0.00 34.52 3.62
4569 4987 0.630673 ACCATGCAAGGAGGCCAATA 59.369 50.000 16.33 0.00 0.00 1.90
4574 4992 4.384427 CCATGCAAGGAGGCCAATAAAAAT 60.384 41.667 5.01 0.00 0.00 1.82
4583 5001 8.658840 AGGAGGCCAATAAAAATTGTACTTAA 57.341 30.769 5.01 0.00 0.00 1.85
4584 5002 9.095700 AGGAGGCCAATAAAAATTGTACTTAAA 57.904 29.630 5.01 0.00 0.00 1.52
4659 5077 4.898829 TGGATAAATGCCACTCGAATTG 57.101 40.909 0.00 0.00 0.00 2.32
4681 5099 0.947244 GCGATTCCGAGAAATGCCAT 59.053 50.000 0.00 0.00 38.22 4.40
4684 5102 2.213499 GATTCCGAGAAATGCCATCGT 58.787 47.619 0.00 0.00 34.71 3.73
4699 5117 5.226396 TGCCATCGTAATTTCCAAACTTTG 58.774 37.500 0.00 0.00 0.00 2.77
4720 5138 3.390639 TGAAAAATGCCATTTCCAGTGGT 59.609 39.130 9.54 0.00 39.01 4.16
4741 5159 6.146021 GTGGTATTTTTCAAAGTCTGCAATGG 59.854 38.462 0.00 0.00 0.00 3.16
4742 5160 6.041409 TGGTATTTTTCAAAGTCTGCAATGGA 59.959 34.615 0.00 0.00 0.00 3.41
4745 5163 5.596836 TTTTCAAAGTCTGCAATGGAGTT 57.403 34.783 0.85 0.00 0.00 3.01
4750 5168 3.904136 AGTCTGCAATGGAGTTTTTCG 57.096 42.857 0.85 0.00 0.00 3.46
4758 5176 4.803613 GCAATGGAGTTTTTCGAAGTTTGT 59.196 37.500 0.00 0.00 0.00 2.83
4764 5182 8.989653 TGGAGTTTTTCGAAGTTTGTAAAAAT 57.010 26.923 8.69 8.03 34.43 1.82
4772 5190 5.746245 TCGAAGTTTGTAAAAATTGCAGTGG 59.254 36.000 0.00 0.00 0.00 4.00
4788 5206 5.982465 GCAGTGGCATTTTTCAAAGTTTA 57.018 34.783 0.00 0.00 40.72 2.01
4789 5207 5.977731 GCAGTGGCATTTTTCAAAGTTTAG 58.022 37.500 0.00 0.00 40.72 1.85
4804 5222 2.884639 AGTTTAGAAATTGCAGTGGCGT 59.115 40.909 0.00 0.00 45.35 5.68
4809 5227 2.030805 AGAAATTGCAGTGGCGTTTCTC 60.031 45.455 11.57 0.00 46.02 2.87
4811 5229 0.602638 ATTGCAGTGGCGTTTCTCGA 60.603 50.000 0.00 0.00 45.35 4.04
4892 5310 0.251916 TTTGGGCCGTATGGTCTCTG 59.748 55.000 5.36 0.00 40.80 3.35
4893 5311 1.622607 TTGGGCCGTATGGTCTCTGG 61.623 60.000 5.36 0.00 40.80 3.86
4903 5321 0.399949 TGGTCTCTGGTGAACCCTGT 60.400 55.000 0.00 0.00 33.97 4.00
4904 5322 0.321996 GGTCTCTGGTGAACCCTGTC 59.678 60.000 0.00 0.00 33.97 3.51
4913 5331 2.105993 GGTGAACCCTGTCTGGTAGTTT 59.894 50.000 0.00 0.00 37.76 2.66
4930 5348 7.970102 TGGTAGTTTTATCTGTAAAGTCAGGT 58.030 34.615 0.00 0.00 36.25 4.00
4935 5353 7.597743 AGTTTTATCTGTAAAGTCAGGTGTACG 59.402 37.037 0.00 0.00 36.25 3.67
4936 5354 3.293311 TCTGTAAAGTCAGGTGTACGC 57.707 47.619 0.00 0.00 36.25 4.42
4950 5368 4.517832 AGGTGTACGCCTTTCCTTTAAAAG 59.482 41.667 22.56 0.00 34.71 2.27
4956 5374 7.930865 TGTACGCCTTTCCTTTAAAAGTAACTA 59.069 33.333 0.00 0.00 34.99 2.24
4996 5414 0.387929 TGCCGACTCCCGCTATAAAG 59.612 55.000 0.00 0.00 36.84 1.85
5022 5440 0.244994 CTCGGGAGCTATGATTCGGG 59.755 60.000 0.00 0.00 0.00 5.14
5023 5441 1.374758 CGGGAGCTATGATTCGGGC 60.375 63.158 0.00 0.00 0.00 6.13
5045 5463 2.861147 AGTTAGGCCAACTCCAACTC 57.139 50.000 5.01 0.00 44.48 3.01
5046 5464 1.351350 AGTTAGGCCAACTCCAACTCC 59.649 52.381 5.01 0.00 44.48 3.85
5047 5465 1.073284 GTTAGGCCAACTCCAACTCCA 59.927 52.381 5.01 0.00 34.06 3.86
5048 5466 1.440618 TAGGCCAACTCCAACTCCAA 58.559 50.000 5.01 0.00 0.00 3.53
5049 5467 0.779997 AGGCCAACTCCAACTCCAAT 59.220 50.000 5.01 0.00 0.00 3.16
5050 5468 0.890683 GGCCAACTCCAACTCCAATG 59.109 55.000 0.00 0.00 0.00 2.82
5090 5508 1.149627 CCTGTCCGTTTGGGTCCAA 59.850 57.895 0.00 0.00 37.00 3.53
5115 5533 2.208132 TAAATGTCATGGCCCAACGT 57.792 45.000 0.00 0.00 0.00 3.99
5127 5546 2.941210 CCAACGTGTGGCCTTGTAT 58.059 52.632 3.32 0.00 41.72 2.29
5135 5554 3.253230 GTGTGGCCTTGTATGCAAAATC 58.747 45.455 3.32 0.00 33.73 2.17
5136 5555 2.233431 TGTGGCCTTGTATGCAAAATCC 59.767 45.455 3.32 0.16 33.73 3.01
5139 5558 2.479560 GGCCTTGTATGCAAAATCCGTC 60.480 50.000 0.00 0.00 33.73 4.79
5150 5569 0.884704 AAATCCGTCTGCTGCGTGTT 60.885 50.000 0.00 0.31 0.00 3.32
5157 5576 2.710971 CTGCTGCGTGTTCGTCTCG 61.711 63.158 0.00 0.00 39.49 4.04
5185 5604 2.026520 CGGCGCAAATTTGGGTTGG 61.027 57.895 29.18 17.92 42.44 3.77
5190 5609 2.095819 GCGCAAATTTGGGTTGGATTTG 60.096 45.455 29.18 0.00 42.44 2.32
5195 5614 0.676736 TTTGGGTTGGATTTGCGTCC 59.323 50.000 0.00 0.00 38.81 4.79
5204 5623 2.499693 TGGATTTGCGTCCAGATAGACA 59.500 45.455 1.54 0.00 43.20 3.41
5205 5624 2.866762 GGATTTGCGTCCAGATAGACAC 59.133 50.000 0.00 0.00 38.20 3.67
5219 5638 3.493830 GACACTGGACGGACGTGCA 62.494 63.158 17.60 17.60 43.94 4.57
5220 5639 2.279851 CACTGGACGGACGTGCAA 60.280 61.111 18.96 4.74 45.33 4.08
5257 5676 4.457496 CCTCCGCCAGCGTGTCAT 62.457 66.667 11.55 0.00 37.81 3.06
5263 5682 3.499737 CCAGCGTGTCATTCGGCC 61.500 66.667 0.00 0.00 0.00 6.13
5284 5703 2.935481 CACCTCCCCTCAAGCCCA 60.935 66.667 0.00 0.00 0.00 5.36
5296 5715 4.026052 CCTCAAGCCCATTTAATCCAAGT 58.974 43.478 0.00 0.00 0.00 3.16
5318 5737 2.274104 GGAAAGGGCCCGCATGTA 59.726 61.111 18.44 0.00 0.00 2.29
5319 5738 1.379309 GGAAAGGGCCCGCATGTAA 60.379 57.895 18.44 0.00 0.00 2.41
5320 5739 1.384222 GGAAAGGGCCCGCATGTAAG 61.384 60.000 18.44 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.403583 ACCAGTGTCAAAGTCTAAGAATTAAAA 57.596 29.630 0.00 0.00 0.00 1.52
19 20 8.684386 TCAGAAAAATATAAACACCAGTGTCA 57.316 30.769 3.49 0.00 44.13 3.58
20 21 9.959749 TTTCAGAAAAATATAAACACCAGTGTC 57.040 29.630 3.49 0.00 44.13 3.67
148 152 9.602568 TGTTGTTAGTGAAGTACATGAAACTAA 57.397 29.630 0.00 1.67 0.00 2.24
150 154 8.500753 TTGTTGTTAGTGAAGTACATGAAACT 57.499 30.769 0.00 0.00 0.00 2.66
162 167 5.291371 TCGTCGTCATTTTGTTGTTAGTGAA 59.709 36.000 0.00 0.00 0.00 3.18
168 179 4.509970 TCTGATCGTCGTCATTTTGTTGTT 59.490 37.500 0.00 0.00 0.00 2.83
170 181 4.645667 TCTGATCGTCGTCATTTTGTTG 57.354 40.909 0.00 0.00 0.00 3.33
256 267 2.791927 GCCTCGAAACCGAATGGC 59.208 61.111 0.00 0.00 39.22 4.40
419 452 0.098905 CATTCGCCGAGAGAAGACGA 59.901 55.000 0.00 0.00 0.00 4.20
551 584 3.378112 TGGTAACTCGGTAAATCGTCGAT 59.622 43.478 0.75 0.75 37.61 3.59
562 595 0.390735 GCCGTCAATGGTAACTCGGT 60.391 55.000 0.00 0.00 40.05 4.69
1038 1093 2.357323 GGCGTAGTACTTGTAGACCTCC 59.643 54.545 0.00 0.00 0.00 4.30
1150 1216 0.878086 GCTACAGGAGGATCAAGCGC 60.878 60.000 0.00 0.00 36.25 5.92
1165 1231 3.365064 GCCGGAAAGAAGAAACAAGCTAC 60.365 47.826 5.05 0.00 0.00 3.58
1167 1233 1.609072 GCCGGAAAGAAGAAACAAGCT 59.391 47.619 5.05 0.00 0.00 3.74
1168 1234 1.335964 GGCCGGAAAGAAGAAACAAGC 60.336 52.381 5.05 0.00 0.00 4.01
1169 1235 1.953686 TGGCCGGAAAGAAGAAACAAG 59.046 47.619 5.05 0.00 0.00 3.16
1170 1236 1.679153 GTGGCCGGAAAGAAGAAACAA 59.321 47.619 5.05 0.00 0.00 2.83
1171 1237 1.314730 GTGGCCGGAAAGAAGAAACA 58.685 50.000 5.05 0.00 0.00 2.83
1176 1242 0.320421 TTCTCGTGGCCGGAAAGAAG 60.320 55.000 5.05 0.00 33.95 2.85
1219 1288 4.504916 CTCTCGGAGCCGTGCCTG 62.505 72.222 8.96 0.00 40.74 4.85
1228 1297 1.400142 CACTGACACTAGCTCTCGGAG 59.600 57.143 0.00 0.00 0.00 4.63
1229 1298 1.271434 ACACTGACACTAGCTCTCGGA 60.271 52.381 0.00 0.00 0.00 4.55
1230 1299 1.135546 CACACTGACACTAGCTCTCGG 60.136 57.143 0.00 0.00 0.00 4.63
1231 1300 1.807142 TCACACTGACACTAGCTCTCG 59.193 52.381 0.00 0.00 0.00 4.04
1232 1301 3.210358 GTCACACTGACACTAGCTCTC 57.790 52.381 0.00 0.00 46.22 3.20
1244 1313 0.179076 TCACACAGCCAGTCACACTG 60.179 55.000 0.00 0.00 45.53 3.66
1278 1347 1.140134 CCCTTTTCCCCAGACCAGGA 61.140 60.000 0.00 0.00 0.00 3.86
1291 1360 1.357079 AGAGCAATCTCAGGCCCTTTT 59.643 47.619 0.00 0.00 41.81 2.27
1293 1362 0.255318 CAGAGCAATCTCAGGCCCTT 59.745 55.000 0.00 0.00 41.81 3.95
1298 1367 1.942677 CAGAGCAGAGCAATCTCAGG 58.057 55.000 0.00 0.00 41.81 3.86
1320 1394 4.217118 GTCAAGCATTCAATCACTTCAGGT 59.783 41.667 0.00 0.00 0.00 4.00
1474 1555 0.105453 GACAGGAGGCCCTATCAGGA 60.105 60.000 0.00 0.00 42.02 3.86
1542 1623 7.382218 CAGGTTCAAAAGTTGATTTACCATCAC 59.618 37.037 11.15 0.00 39.46 3.06
1544 1625 7.595130 GTCAGGTTCAAAAGTTGATTTACCATC 59.405 37.037 11.15 1.18 39.46 3.51
1561 1644 4.081697 TCAGCGAATCATAAGTCAGGTTCA 60.082 41.667 0.00 0.00 0.00 3.18
1575 1658 1.063174 GACCACATTGCTCAGCGAATC 59.937 52.381 0.00 0.00 0.00 2.52
1606 1689 2.786495 CCATGGGACCTCCGTCTCG 61.786 68.421 2.85 0.00 43.05 4.04
1713 1796 1.994779 GCCAAACCAAATTCATCAGCG 59.005 47.619 0.00 0.00 0.00 5.18
1751 1834 2.391926 TGTTCACCTCCTCCTGTGTA 57.608 50.000 0.00 0.00 34.14 2.90
2028 2122 3.795877 ACCAAACCAAGCATCTTTTGTG 58.204 40.909 0.00 0.00 0.00 3.33
2033 2127 4.961438 ATCAAACCAAACCAAGCATCTT 57.039 36.364 0.00 0.00 0.00 2.40
2040 2138 3.639094 CACCACCTATCAAACCAAACCAA 59.361 43.478 0.00 0.00 0.00 3.67
2213 2313 2.279935 AAATTACCCACAACGAGCCA 57.720 45.000 0.00 0.00 0.00 4.75
2281 2385 3.795688 ACAGATCAACAGTTGTGGGAT 57.204 42.857 13.14 0.00 0.00 3.85
2385 2491 3.074412 GCTTGTGTAGAAGCTTAAGCCA 58.926 45.455 23.71 11.31 44.26 4.75
2402 2508 2.867109 TCAGGGAAGAAGGAAGCTTG 57.133 50.000 2.10 0.00 0.00 4.01
2413 2524 4.335594 GGAATTCGGTACAATTCAGGGAAG 59.664 45.833 16.30 0.00 42.40 3.46
2428 2539 6.872020 ACGTATCATTAATGTAGGGAATTCGG 59.128 38.462 14.97 0.00 0.00 4.30
2430 2541 7.811236 TCGACGTATCATTAATGTAGGGAATTC 59.189 37.037 14.97 0.00 0.00 2.17
2442 2553 7.436970 AGCAACATAACATCGACGTATCATTAA 59.563 33.333 0.00 0.00 0.00 1.40
2450 2561 2.923655 CAGAGCAACATAACATCGACGT 59.076 45.455 0.00 0.00 0.00 4.34
2678 2790 7.011763 GCACAGTAGCATTTCAGAATTCAGATA 59.988 37.037 8.44 0.60 0.00 1.98
2727 2839 3.845781 AAGCAGTGTACCATATGGAGG 57.154 47.619 28.77 10.91 38.94 4.30
2881 2993 5.663292 AGTTTTTGTCTCGTCGAAAATACG 58.337 37.500 0.00 0.00 41.64 3.06
2882 2994 6.642917 TGAGTTTTTGTCTCGTCGAAAATAC 58.357 36.000 0.00 0.42 34.54 1.89
2883 2995 6.831727 TGAGTTTTTGTCTCGTCGAAAATA 57.168 33.333 0.00 0.00 34.54 1.40
2884 2996 5.728351 TGAGTTTTTGTCTCGTCGAAAAT 57.272 34.783 0.00 0.00 34.54 1.82
2885 2997 5.522460 AGATGAGTTTTTGTCTCGTCGAAAA 59.478 36.000 0.00 0.00 46.44 2.29
2889 3001 4.974103 AAGATGAGTTTTTGTCTCGTCG 57.026 40.909 8.75 0.00 46.44 5.12
2890 3002 9.665264 AATAAAAAGATGAGTTTTTGTCTCGTC 57.335 29.630 6.95 6.95 43.95 4.20
2914 3029 5.240844 CCTCCCGTGAAACTAAGAAACAAAT 59.759 40.000 0.00 0.00 31.75 2.32
3087 3202 7.560368 ACCACACAACCAATTTTCTTATTTCA 58.440 30.769 0.00 0.00 0.00 2.69
3103 3218 5.296035 GCCCTATGAAATACTACCACACAAC 59.704 44.000 0.00 0.00 0.00 3.32
3107 3222 4.041464 TGGCCCTATGAAATACTACCACA 58.959 43.478 0.00 0.00 0.00 4.17
3113 3228 4.196971 GTCGTTTGGCCCTATGAAATACT 58.803 43.478 0.00 0.00 0.00 2.12
3114 3229 3.942748 TGTCGTTTGGCCCTATGAAATAC 59.057 43.478 0.00 0.00 0.00 1.89
3115 3230 3.942748 GTGTCGTTTGGCCCTATGAAATA 59.057 43.478 0.00 0.00 0.00 1.40
3116 3231 2.752903 GTGTCGTTTGGCCCTATGAAAT 59.247 45.455 0.00 0.00 0.00 2.17
3133 3252 4.171005 TCAAATCGTATGGAAGACGTGTC 58.829 43.478 0.00 0.00 41.11 3.67
3173 3451 3.261580 GGCAGGCCATAAATTCAACAAC 58.738 45.455 5.01 0.00 35.81 3.32
3198 3476 5.276461 TGTTGCTTGTGACTCTTCTAAGA 57.724 39.130 0.00 0.00 0.00 2.10
3204 3482 2.684881 CCAGTTGTTGCTTGTGACTCTT 59.315 45.455 0.00 0.00 0.00 2.85
3257 3563 3.431673 TGGCACAACTTGGATGACATA 57.568 42.857 0.00 0.00 31.92 2.29
3300 3606 1.614903 TGTGAGCCAAGGAAAAGCATG 59.385 47.619 0.00 0.00 0.00 4.06
3313 3619 2.208431 GAGCATGTGACTATGTGAGCC 58.792 52.381 0.00 0.00 0.00 4.70
3385 3691 0.381801 AAAGGCACAACGCTGAACAG 59.618 50.000 0.00 0.00 41.91 3.16
3394 3760 7.621102 CATAAACTGAAAGAAAAAGGCACAAC 58.379 34.615 0.00 0.00 37.43 3.32
3617 3987 2.692368 TCATCCTCTGGTGGGCCC 60.692 66.667 17.59 17.59 0.00 5.80
3636 4006 4.534500 TGTTACAACTGGGGTGATATCACT 59.466 41.667 29.87 13.86 45.73 3.41
3719 4089 3.999663 CTCTCCTGTACTCTTGGCAAAAG 59.000 47.826 0.00 0.00 0.00 2.27
3986 4385 3.507162 TGTGAACACACATCCCTGAAT 57.493 42.857 3.39 0.00 39.23 2.57
4136 4545 2.346803 ACGTTGTCGGATCAATTCCAG 58.653 47.619 0.00 0.00 45.78 3.86
4155 4564 2.031944 GCAACTGGAAGGAGAAAACGAC 60.032 50.000 0.00 0.00 39.30 4.34
4245 4654 5.565592 TGGTCATCATGTTTATGCTGTTC 57.434 39.130 0.00 0.00 33.33 3.18
4380 4789 6.197364 TCTCACGTGGTTACAAAACATTTT 57.803 33.333 17.00 0.00 37.34 1.82
4463 4880 8.696410 TTGCTCTCGTTTTGTTTTATTTTCTT 57.304 26.923 0.00 0.00 0.00 2.52
4464 4881 7.043391 GCTTGCTCTCGTTTTGTTTTATTTTCT 60.043 33.333 0.00 0.00 0.00 2.52
4465 4882 7.057402 GCTTGCTCTCGTTTTGTTTTATTTTC 58.943 34.615 0.00 0.00 0.00 2.29
4480 4898 1.060266 CAAGATTCGTGCTTGCTCTCG 59.940 52.381 0.00 0.00 36.66 4.04
4519 4937 2.407521 TCATCGTCTATGAGAAGCGC 57.592 50.000 0.00 0.00 39.77 5.92
4528 4946 4.848562 TCTACGGCATTTCATCGTCTAT 57.151 40.909 0.00 0.00 38.19 1.98
4530 4948 3.187700 GTTCTACGGCATTTCATCGTCT 58.812 45.455 0.00 0.00 38.19 4.18
4533 4951 2.276201 TGGTTCTACGGCATTTCATCG 58.724 47.619 0.00 0.00 0.00 3.84
4552 4970 3.891422 TTTTATTGGCCTCCTTGCATG 57.109 42.857 3.32 0.00 0.00 4.06
4574 4992 7.592938 CCAGTTTCATCAGCATTTAAGTACAA 58.407 34.615 0.00 0.00 0.00 2.41
4583 5001 2.895404 AGTTGCCAGTTTCATCAGCATT 59.105 40.909 0.00 0.00 32.67 3.56
4584 5002 2.522185 AGTTGCCAGTTTCATCAGCAT 58.478 42.857 0.00 0.00 32.67 3.79
4659 5077 0.028110 GCATTTCTCGGAATCGCCAC 59.972 55.000 0.00 0.00 35.94 5.01
4662 5080 0.947244 ATGGCATTTCTCGGAATCGC 59.053 50.000 0.00 0.00 36.13 4.58
4681 5099 8.331742 GCATTTTTCAAAGTTTGGAAATTACGA 58.668 29.630 20.26 7.80 37.93 3.43
4684 5102 8.511604 TGGCATTTTTCAAAGTTTGGAAATTA 57.488 26.923 20.26 9.10 37.93 1.40
4699 5117 4.006780 ACCACTGGAAATGGCATTTTTC 57.993 40.909 25.02 19.60 41.31 2.29
4720 5138 7.288810 ACTCCATTGCAGACTTTGAAAAATA 57.711 32.000 0.00 0.00 0.00 1.40
4741 5159 9.194716 GCAATTTTTACAAACTTCGAAAAACTC 57.805 29.630 0.00 0.00 34.56 3.01
4742 5160 8.713271 TGCAATTTTTACAAACTTCGAAAAACT 58.287 25.926 0.00 0.00 34.56 2.66
4745 5163 8.165428 CACTGCAATTTTTACAAACTTCGAAAA 58.835 29.630 0.00 0.00 0.00 2.29
4750 5168 5.293079 TGCCACTGCAATTTTTACAAACTTC 59.707 36.000 0.00 0.00 46.66 3.01
4772 5190 9.161684 CTGCAATTTCTAAACTTTGAAAAATGC 57.838 29.630 20.42 20.42 42.14 3.56
4775 5193 8.663911 CCACTGCAATTTCTAAACTTTGAAAAA 58.336 29.630 3.75 0.00 36.00 1.94
4788 5206 1.956477 AGAAACGCCACTGCAATTTCT 59.044 42.857 7.57 7.57 42.95 2.52
4789 5207 2.319472 GAGAAACGCCACTGCAATTTC 58.681 47.619 0.00 0.00 40.22 2.17
4804 5222 3.500299 TGAATTGTGGCGATTTCGAGAAA 59.500 39.130 3.77 0.40 43.02 2.52
4809 5227 2.910482 CACTTGAATTGTGGCGATTTCG 59.090 45.455 0.00 0.00 43.27 3.46
4811 5229 3.302365 CCACTTGAATTGTGGCGATTT 57.698 42.857 0.85 0.00 46.73 2.17
4879 5297 1.134788 GGTTCACCAGAGACCATACGG 60.135 57.143 0.00 0.00 35.64 4.02
4881 5299 2.093447 CAGGGTTCACCAGAGACCATAC 60.093 54.545 0.00 0.00 43.89 2.39
4892 5310 1.349067 ACTACCAGACAGGGTTCACC 58.651 55.000 0.00 0.00 43.89 4.02
4893 5311 3.487120 AAACTACCAGACAGGGTTCAC 57.513 47.619 0.00 0.00 43.89 3.18
4903 5321 8.311836 CCTGACTTTACAGATAAAACTACCAGA 58.688 37.037 0.00 0.00 39.94 3.86
4904 5322 8.095169 ACCTGACTTTACAGATAAAACTACCAG 58.905 37.037 0.00 0.00 39.94 4.00
4913 5331 5.404946 GCGTACACCTGACTTTACAGATAA 58.595 41.667 0.00 0.00 39.94 1.75
4930 5348 6.767423 AGTTACTTTTAAAGGAAAGGCGTACA 59.233 34.615 3.66 0.00 40.19 2.90
4935 5353 8.953313 TGCTATAGTTACTTTTAAAGGAAAGGC 58.047 33.333 3.66 5.55 40.19 4.35
4950 5368 5.270794 ACCCCTATAGGCTGCTATAGTTAC 58.729 45.833 13.85 0.00 37.90 2.50
4956 5374 4.080299 GCAATAACCCCTATAGGCTGCTAT 60.080 45.833 13.85 5.16 0.00 2.97
5002 5420 0.244994 CCGAATCATAGCTCCCGAGG 59.755 60.000 0.00 0.00 0.00 4.63
5045 5463 1.066716 CCAAATGTGTCCCTGCATTGG 60.067 52.381 0.00 0.00 35.72 3.16
5046 5464 1.619827 ACCAAATGTGTCCCTGCATTG 59.380 47.619 0.00 0.00 35.72 2.82
5047 5465 2.014010 ACCAAATGTGTCCCTGCATT 57.986 45.000 0.00 0.00 36.95 3.56
5048 5466 2.014010 AACCAAATGTGTCCCTGCAT 57.986 45.000 0.00 0.00 0.00 3.96
5049 5467 1.411977 CAAACCAAATGTGTCCCTGCA 59.588 47.619 0.00 0.00 0.00 4.41
5050 5468 1.412343 ACAAACCAAATGTGTCCCTGC 59.588 47.619 0.00 0.00 0.00 4.85
5090 5508 5.221224 CGTTGGGCCATGACATTTATATGTT 60.221 40.000 7.26 0.00 44.90 2.71
5102 5520 2.282110 CCACACGTTGGGCCATGA 60.282 61.111 7.26 0.00 42.54 3.07
5115 5533 2.233431 GGATTTTGCATACAAGGCCACA 59.767 45.455 5.01 0.00 37.04 4.17
5120 5538 3.731867 GCAGACGGATTTTGCATACAAGG 60.732 47.826 0.00 0.00 37.04 3.61
5127 5546 1.580942 GCAGCAGACGGATTTTGCA 59.419 52.632 0.00 0.00 40.22 4.08
5135 5554 3.767230 CGAACACGCAGCAGACGG 61.767 66.667 0.00 0.00 34.00 4.79
5136 5555 2.988549 GACGAACACGCAGCAGACG 61.989 63.158 0.00 0.00 0.00 4.18
5139 5558 2.710971 CGAGACGAACACGCAGCAG 61.711 63.158 0.00 0.00 0.00 4.24
5164 5583 0.105039 AACCCAAATTTGCGCCGAAA 59.895 45.000 12.92 0.00 0.00 3.46
5166 5585 1.006805 CAACCCAAATTTGCGCCGA 60.007 52.632 12.92 0.00 0.00 5.54
5176 5595 0.676736 GGACGCAAATCCAACCCAAA 59.323 50.000 0.00 0.00 38.77 3.28
5185 5604 3.553511 CAGTGTCTATCTGGACGCAAATC 59.446 47.826 9.47 0.00 45.75 2.17
5195 5614 1.064208 CGTCCGTCCAGTGTCTATCTG 59.936 57.143 0.00 0.00 0.00 2.90
5199 5618 1.859427 GCACGTCCGTCCAGTGTCTA 61.859 60.000 0.00 0.00 38.10 2.59
5204 5623 2.029073 CTTGCACGTCCGTCCAGT 59.971 61.111 0.00 0.00 0.00 4.00
5205 5624 2.029073 ACTTGCACGTCCGTCCAG 59.971 61.111 0.00 0.00 0.00 3.86
5208 5627 0.944311 ATGACACTTGCACGTCCGTC 60.944 55.000 6.81 6.81 0.00 4.79
5219 5638 1.873591 GCGAACACCAAGATGACACTT 59.126 47.619 0.00 0.00 0.00 3.16
5220 5639 1.512926 GCGAACACCAAGATGACACT 58.487 50.000 0.00 0.00 0.00 3.55
5249 5668 3.849953 GTCGGCCGAATGACACGC 61.850 66.667 32.93 11.35 35.20 5.34
5251 5670 2.047655 TGGTCGGCCGAATGACAC 60.048 61.111 32.93 17.21 36.83 3.67
5252 5671 2.047655 GTGGTCGGCCGAATGACA 60.048 61.111 32.93 22.85 36.83 3.58
5263 5682 2.982130 CTTGAGGGGAGGTGGTCG 59.018 66.667 0.00 0.00 0.00 4.79
5274 5693 4.026052 ACTTGGATTAAATGGGCTTGAGG 58.974 43.478 0.00 0.00 0.00 3.86
5275 5694 4.678840 GCACTTGGATTAAATGGGCTTGAG 60.679 45.833 0.00 0.00 0.00 3.02
5276 5695 3.195396 GCACTTGGATTAAATGGGCTTGA 59.805 43.478 0.00 0.00 0.00 3.02
5284 5703 4.082245 CCTTTCCACGCACTTGGATTAAAT 60.082 41.667 0.00 0.00 45.42 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.