Multiple sequence alignment - TraesCS2D01G195300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G195300 chr2D 100.000 7448 0 0 1 7448 141483301 141475854 0.000000e+00 13754.0
1 TraesCS2D01G195300 chr2D 91.503 459 27 3 6981 7429 553365735 553366191 8.210000e-174 621.0
2 TraesCS2D01G195300 chr2A 94.336 3178 100 40 3 3145 159869419 159872551 0.000000e+00 4798.0
3 TraesCS2D01G195300 chr2A 95.879 1990 63 13 4848 6829 159875437 159877415 0.000000e+00 3203.0
4 TraesCS2D01G195300 chr2A 96.069 1094 26 6 3723 4816 159874359 159875435 0.000000e+00 1766.0
5 TraesCS2D01G195300 chr2A 95.032 624 14 5 3125 3732 159873359 159873981 0.000000e+00 965.0
6 TraesCS2D01G195300 chr2A 90.407 688 50 7 1 686 159867885 159868558 0.000000e+00 891.0
7 TraesCS2D01G195300 chr2A 88.166 338 14 9 7112 7448 159877837 159878149 5.450000e-101 379.0
8 TraesCS2D01G195300 chr2A 91.089 101 8 1 3724 3824 116449089 116448990 1.300000e-27 135.0
9 TraesCS2D01G195300 chr2B 90.135 2960 174 42 558 3445 199010814 199013727 0.000000e+00 3740.0
10 TraesCS2D01G195300 chr2B 92.877 1460 54 12 3444 4891 199013851 199015272 0.000000e+00 2074.0
11 TraesCS2D01G195300 chr2B 92.269 983 44 10 5832 6803 199018695 199019656 0.000000e+00 1365.0
12 TraesCS2D01G195300 chr2B 92.916 847 36 9 4889 5723 199015352 199016186 0.000000e+00 1210.0
13 TraesCS2D01G195300 chr2B 89.439 303 31 1 1 303 199009485 199009786 1.520000e-101 381.0
14 TraesCS2D01G195300 chr2B 88.104 269 22 5 303 571 199010539 199010797 2.020000e-80 311.0
15 TraesCS2D01G195300 chr2B 89.423 104 11 0 3727 3830 519666436 519666333 1.690000e-26 132.0
16 TraesCS2D01G195300 chr1B 85.289 1074 89 31 1466 2491 564711133 564710081 0.000000e+00 1044.0
17 TraesCS2D01G195300 chr1B 85.343 846 75 31 4843 5682 274862561 274863363 0.000000e+00 830.0
18 TraesCS2D01G195300 chr1B 87.255 612 39 13 1949 2559 564710607 564710034 0.000000e+00 662.0
19 TraesCS2D01G195300 chr1B 80.733 737 85 34 5681 6379 274863394 274864111 8.560000e-144 521.0
20 TraesCS2D01G195300 chr1B 85.098 510 54 12 979 1472 564716144 564715641 1.120000e-137 501.0
21 TraesCS2D01G195300 chr1B 90.654 107 10 0 3724 3830 507850360 507850466 7.790000e-30 143.0
22 TraesCS2D01G195300 chr1B 88.073 109 13 0 3722 3830 656252847 656252739 6.060000e-26 130.0
23 TraesCS2D01G195300 chr1B 89.744 78 4 2 2554 2627 564697708 564697631 6.150000e-16 97.1
24 TraesCS2D01G195300 chr7B 84.623 1021 105 26 979 1959 424554668 424553660 0.000000e+00 968.0
25 TraesCS2D01G195300 chr7B 88.567 691 47 16 1942 2627 424553648 424552985 0.000000e+00 809.0
26 TraesCS2D01G195300 chr7B 88.197 466 36 13 4862 5320 16921783 16921330 8.500000e-149 538.0
27 TraesCS2D01G195300 chr4A 86.777 847 83 15 4843 5682 423377456 423376632 0.000000e+00 917.0
28 TraesCS2D01G195300 chr4A 80.711 731 87 32 5681 6379 423376178 423375470 3.080000e-143 520.0
29 TraesCS2D01G195300 chr4A 86.047 387 36 8 5296 5682 423376578 423376210 4.190000e-107 399.0
30 TraesCS2D01G195300 chr6B 88.741 675 56 15 4843 5509 557774459 557773797 0.000000e+00 808.0
31 TraesCS2D01G195300 chr6B 85.178 533 65 9 5852 6379 557773166 557772643 1.100000e-147 534.0
32 TraesCS2D01G195300 chr6B 83.558 371 49 6 5838 6202 275770013 275769649 3.330000e-88 337.0
33 TraesCS2D01G195300 chr6B 83.851 322 31 15 4843 5157 275771188 275770881 3.400000e-73 287.0
34 TraesCS2D01G195300 chr5B 86.479 710 73 14 4857 5559 247686610 247685917 0.000000e+00 758.0
35 TraesCS2D01G195300 chr5B 87.027 370 32 10 4872 5236 346440375 346440733 3.240000e-108 403.0
36 TraesCS2D01G195300 chr1A 89.114 542 24 13 6921 7429 451522055 451521516 6.300000e-180 641.0
37 TraesCS2D01G195300 chr1A 90.088 454 31 6 6986 7429 552086825 552087274 1.800000e-160 577.0
38 TraesCS2D01G195300 chr1A 96.721 61 1 1 6921 6980 552086735 552086795 4.760000e-17 100.0
39 TraesCS2D01G195300 chrUn 91.921 458 23 6 6984 7429 22375968 22375513 4.900000e-176 628.0
40 TraesCS2D01G195300 chr6D 91.410 454 26 4 6986 7429 19564985 19564535 1.780000e-170 610.0
41 TraesCS2D01G195300 chr6D 96.364 55 1 1 6921 6974 19565074 19565020 1.030000e-13 89.8
42 TraesCS2D01G195300 chr5A 90.529 454 31 4 6986 7429 19264402 19264853 2.310000e-164 590.0
43 TraesCS2D01G195300 chr5A 86.777 121 15 1 3711 3831 119997825 119997706 4.690000e-27 134.0
44 TraesCS2D01G195300 chr5A 93.333 60 3 1 6921 6979 19264311 19264370 3.700000e-13 87.9
45 TraesCS2D01G195300 chr3B 86.852 540 47 14 4996 5530 217400104 217400624 3.870000e-162 582.0
46 TraesCS2D01G195300 chr7A 90.088 454 33 4 6986 7429 606317847 606317396 5.010000e-161 579.0
47 TraesCS2D01G195300 chr7A 89.427 454 31 7 6986 7429 110398630 110399076 2.350000e-154 556.0
48 TraesCS2D01G195300 chr7A 95.082 61 2 1 6921 6980 606317938 606317878 2.210000e-15 95.3
49 TraesCS2D01G195300 chr7A 93.333 60 3 1 6921 6979 110398540 110398599 3.700000e-13 87.9
50 TraesCS2D01G195300 chr4B 90.066 453 33 4 6987 7429 279320883 279320433 1.800000e-160 577.0
51 TraesCS2D01G195300 chr7D 88.140 430 40 10 4846 5270 632829695 632830118 1.120000e-137 501.0
52 TraesCS2D01G195300 chr7D 91.480 223 13 6 5309 5530 632830115 632830332 1.210000e-77 302.0
53 TraesCS2D01G195300 chr6A 91.228 114 9 1 3723 3836 465229028 465228916 3.600000e-33 154.0
54 TraesCS2D01G195300 chr6A 85.366 123 13 5 3724 3843 50253385 50253265 1.010000e-23 122.0
55 TraesCS2D01G195300 chr3D 90.654 107 10 0 3724 3830 450875292 450875186 7.790000e-30 143.0
56 TraesCS2D01G195300 chr1D 89.720 107 11 0 3724 3830 128528616 128528722 3.620000e-28 137.0
57 TraesCS2D01G195300 chr1D 90.196 102 10 0 3724 3825 379139897 379139998 4.690000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G195300 chr2D 141475854 141483301 7447 True 13754.000000 13754 100.000000 1 7448 1 chr2D.!!$R1 7447
1 TraesCS2D01G195300 chr2A 159867885 159878149 10264 False 2000.333333 4798 93.314833 1 7448 6 chr2A.!!$F1 7447
2 TraesCS2D01G195300 chr2B 199009485 199019656 10171 False 1513.500000 3740 90.956667 1 6803 6 chr2B.!!$F1 6802
3 TraesCS2D01G195300 chr1B 564710034 564711133 1099 True 853.000000 1044 86.272000 1466 2559 2 chr1B.!!$R4 1093
4 TraesCS2D01G195300 chr1B 274862561 274864111 1550 False 675.500000 830 83.038000 4843 6379 2 chr1B.!!$F2 1536
5 TraesCS2D01G195300 chr1B 564715641 564716144 503 True 501.000000 501 85.098000 979 1472 1 chr1B.!!$R2 493
6 TraesCS2D01G195300 chr7B 424552985 424554668 1683 True 888.500000 968 86.595000 979 2627 2 chr7B.!!$R2 1648
7 TraesCS2D01G195300 chr4A 423375470 423377456 1986 True 612.000000 917 84.511667 4843 6379 3 chr4A.!!$R1 1536
8 TraesCS2D01G195300 chr6B 557772643 557774459 1816 True 671.000000 808 86.959500 4843 6379 2 chr6B.!!$R2 1536
9 TraesCS2D01G195300 chr6B 275769649 275771188 1539 True 312.000000 337 83.704500 4843 6202 2 chr6B.!!$R1 1359
10 TraesCS2D01G195300 chr5B 247685917 247686610 693 True 758.000000 758 86.479000 4857 5559 1 chr5B.!!$R1 702
11 TraesCS2D01G195300 chr1A 451521516 451522055 539 True 641.000000 641 89.114000 6921 7429 1 chr1A.!!$R1 508
12 TraesCS2D01G195300 chr1A 552086735 552087274 539 False 338.500000 577 93.404500 6921 7429 2 chr1A.!!$F1 508
13 TraesCS2D01G195300 chr6D 19564535 19565074 539 True 349.900000 610 93.887000 6921 7429 2 chr6D.!!$R1 508
14 TraesCS2D01G195300 chr5A 19264311 19264853 542 False 338.950000 590 91.931000 6921 7429 2 chr5A.!!$F1 508
15 TraesCS2D01G195300 chr3B 217400104 217400624 520 False 582.000000 582 86.852000 4996 5530 1 chr3B.!!$F1 534
16 TraesCS2D01G195300 chr7A 606317396 606317938 542 True 337.150000 579 92.585000 6921 7429 2 chr7A.!!$R1 508
17 TraesCS2D01G195300 chr7A 110398540 110399076 536 False 321.950000 556 91.380000 6921 7429 2 chr7A.!!$F1 508
18 TraesCS2D01G195300 chr7D 632829695 632830332 637 False 401.500000 501 89.810000 4846 5530 2 chr7D.!!$F1 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.673644 CCATCGGCGAAGAACCAACT 60.674 55.000 15.93 0.00 0.00 3.16 F
900 3231 1.118356 CCTCCCTTCCTCCATCTCCG 61.118 65.000 0.00 0.00 0.00 4.63 F
2608 5037 0.622665 CCTTCCACTTGAGATGGCCT 59.377 55.000 3.32 0.00 37.13 5.19 F
3822 7631 1.135315 CGACAACTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69 F
3824 7633 1.206371 ACAACTAATTCCGGACGGAGG 59.794 52.381 13.64 8.21 46.06 4.30 F
4350 8167 2.643551 CAAAATGGTAGCTCGTGGGAT 58.356 47.619 0.00 0.00 0.00 3.85 F
5904 13534 2.582172 TGATGATTTCCCACTGTCCCAT 59.418 45.455 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 3677 0.111253 AGCAAGGGGCCATGTATAGC 59.889 55.000 4.39 0.00 46.50 2.97 R
2864 5299 1.655484 TGTCAACCATATGCAGAGCG 58.345 50.000 0.00 0.00 0.00 5.03 R
4050 7867 1.893544 TTGCCCAAACAATGCAATGG 58.106 45.000 6.73 3.05 39.86 3.16 R
5477 10294 0.954452 GAAACACAAGGGCCACAGAG 59.046 55.000 6.18 0.00 0.00 3.35 R
5787 13384 5.915758 GCACAAGAGTCGTCATACCTAATAG 59.084 44.000 0.00 0.00 0.00 1.73 R
6249 13898 1.446792 ACGCGCACTGGATGAAGAG 60.447 57.895 5.73 0.00 0.00 2.85 R
7389 15239 0.234884 CCGGAAATTAGCGCGGATTC 59.765 55.000 8.83 5.74 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.873698 TGCCTAAGTCACGGTCAAAC 58.126 50.000 0.00 0.00 0.00 2.93
101 102 4.622740 GCACACAATAGATTGAGGCAAAAC 59.377 41.667 9.21 0.00 40.14 2.43
126 127 7.989741 ACTGATCATAGATGAAAACTAAGGGTG 59.010 37.037 0.00 0.00 40.69 4.61
149 150 0.673644 CCATCGGCGAAGAACCAACT 60.674 55.000 15.93 0.00 0.00 3.16
162 163 5.669164 AGAACCAACTGAGTAGAAGGATC 57.331 43.478 0.00 0.00 0.00 3.36
163 164 4.468153 AGAACCAACTGAGTAGAAGGATCC 59.532 45.833 2.48 2.48 30.03 3.36
173 174 5.105064 TGAGTAGAAGGATCCTAAAAACCCG 60.105 44.000 16.55 0.00 0.00 5.28
228 229 8.667076 TGTATAAGAATCCAATGTCATGACAG 57.333 34.615 30.63 19.18 45.48 3.51
250 251 9.699703 GACAGTTCCAATCCTATAGAAATAGAC 57.300 37.037 0.00 0.00 37.84 2.59
421 2707 7.801716 AACATACATACAAAATAGACCGCAT 57.198 32.000 0.00 0.00 0.00 4.73
430 2716 7.151999 ACAAAATAGACCGCATGAAACAATA 57.848 32.000 0.00 0.00 0.00 1.90
491 2777 9.914131 GAAATTAATAACTCCTCCAATATTGCC 57.086 33.333 10.11 0.00 0.00 4.52
523 2810 6.342111 TGTTCAAACCAAATTGACCCTAAAC 58.658 36.000 0.00 0.00 38.95 2.01
526 2813 5.894393 TCAAACCAAATTGACCCTAAACTCA 59.106 36.000 0.00 0.00 34.50 3.41
530 2817 6.133356 ACCAAATTGACCCTAAACTCAAGAA 58.867 36.000 0.00 0.00 30.04 2.52
557 2844 7.849322 AAAAGCCCCTTCTACTTGAATTTTA 57.151 32.000 0.00 0.00 33.71 1.52
559 2846 7.646548 AAGCCCCTTCTACTTGAATTTTATC 57.353 36.000 0.00 0.00 33.71 1.75
583 2900 2.364970 CTCTAGACTGGAGGGAGCATTG 59.635 54.545 7.93 0.00 0.00 2.82
600 2917 5.177326 AGCATTGTTGTTTGAGCAAAAGAA 58.823 33.333 0.00 0.00 31.33 2.52
601 2918 5.292589 AGCATTGTTGTTTGAGCAAAAGAAG 59.707 36.000 0.00 0.00 32.14 2.85
620 2937 4.841246 AGAAGAAAAGACTAGAGGGAGCAA 59.159 41.667 0.00 0.00 0.00 3.91
635 2954 3.582780 GGAGCAAAGATTCAAAGCCAAG 58.417 45.455 0.00 0.00 0.00 3.61
649 2968 3.365265 CAAGGGTCAACCGGCAGC 61.365 66.667 0.00 0.00 46.96 5.25
775 3094 2.591429 CGCAACTGACCACCAGCA 60.591 61.111 0.00 0.00 46.81 4.41
782 3101 3.360340 GACCACCAGCAGCAGCAC 61.360 66.667 3.17 0.00 45.49 4.40
900 3231 1.118356 CCTCCCTTCCTCCATCTCCG 61.118 65.000 0.00 0.00 0.00 4.63
1314 3677 4.919168 TCCACGTCGTAAGTTTGTTATCTG 59.081 41.667 0.00 0.00 39.48 2.90
1355 3721 2.425592 CGCCCTCTGTTGACACCA 59.574 61.111 0.00 0.00 0.00 4.17
1436 3803 4.090057 GCCGGTGCGTCTCTTTGC 62.090 66.667 1.90 0.00 0.00 3.68
1623 3990 8.677300 TCTTAGATTGTGCATTAGGAATTTGAC 58.323 33.333 0.00 0.00 0.00 3.18
1661 4028 6.154203 TGGCTTTTGATAAAATGACACACA 57.846 33.333 0.00 0.00 0.00 3.72
1720 4104 7.572759 AGTGTGTCATTTGTATCAAAGTTACG 58.427 34.615 1.67 0.00 0.00 3.18
1731 4116 7.208777 TGTATCAAAGTTACGGACAAAGTGTA 58.791 34.615 0.00 0.00 0.00 2.90
1798 4190 3.799035 CTCGTGTTTTATGCACTGTCAC 58.201 45.455 0.00 0.00 34.91 3.67
1804 4196 3.536158 TTTATGCACTGTCACGAAAGC 57.464 42.857 0.00 0.00 0.00 3.51
2097 4521 5.482580 TGATGGGTATAGTTATCTTGGGGT 58.517 41.667 0.00 0.00 0.00 4.95
2131 4556 5.664294 TTGATGCCTGCTTATGATGTTTT 57.336 34.783 0.00 0.00 0.00 2.43
2136 4561 3.731867 GCCTGCTTATGATGTTTTCACCG 60.732 47.826 0.00 0.00 37.11 4.94
2155 4580 2.393764 CGTTGATTTTGTCAGGTTGCC 58.606 47.619 0.00 0.00 38.29 4.52
2378 4804 1.924731 TCTCGGACAGGTCAGTTGAT 58.075 50.000 1.41 0.00 0.00 2.57
2608 5037 0.622665 CCTTCCACTTGAGATGGCCT 59.377 55.000 3.32 0.00 37.13 5.19
2653 5086 2.199652 TTTGGTCTGGGCCTTTGCG 61.200 57.895 4.53 0.00 38.85 4.85
2682 5115 1.909700 AAGGACACATGCGGAAATGT 58.090 45.000 0.00 0.00 41.50 2.71
2824 5259 9.326413 CGAATTTAGAAATCCTGTATACAACCT 57.674 33.333 7.06 1.28 0.00 3.50
2919 5354 7.409697 AGTCGTGTACATATCATTGCATTTTC 58.590 34.615 0.00 0.00 0.00 2.29
2954 5397 5.240713 AGCTGAAAAATAAGAGCCGAATG 57.759 39.130 0.00 0.00 31.43 2.67
3080 5523 9.258826 TGTTATTTTGATATAAATGCATGCCAC 57.741 29.630 16.68 0.00 0.00 5.01
3155 6435 7.208777 TCACTGTTGTTTTAACCATACTCGTA 58.791 34.615 0.00 0.00 0.00 3.43
3420 6713 5.419788 TGCCTCTGCATGTTGATTATTTTCT 59.580 36.000 0.00 0.00 44.23 2.52
3428 6721 6.810182 GCATGTTGATTATTTTCTTGTCTGCT 59.190 34.615 0.00 0.00 0.00 4.24
3737 7546 5.785423 CCTAATATTGTACTCCCTCCATCCA 59.215 44.000 0.00 0.00 0.00 3.41
3740 7549 2.940514 TGTACTCCCTCCATCCAGAA 57.059 50.000 0.00 0.00 0.00 3.02
3807 7616 7.552459 TCTAGATACATCCATTTCAACGACAA 58.448 34.615 0.00 0.00 0.00 3.18
3808 7617 6.422776 AGATACATCCATTTCAACGACAAC 57.577 37.500 0.00 0.00 0.00 3.32
3819 7628 3.319755 TCAACGACAACTAATTCCGGAC 58.680 45.455 1.83 0.00 0.00 4.79
3821 7630 1.274596 CGACAACTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3822 7631 1.135315 CGACAACTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3823 7632 2.537401 GACAACTAATTCCGGACGGAG 58.463 52.381 13.64 3.57 46.06 4.63
3824 7633 1.206371 ACAACTAATTCCGGACGGAGG 59.794 52.381 13.64 8.21 46.06 4.30
3825 7634 1.206371 CAACTAATTCCGGACGGAGGT 59.794 52.381 13.64 8.31 46.06 3.85
3852 7661 8.610035 AGTATCATTTATGAATGCTGCATATCG 58.390 33.333 16.58 3.05 41.94 2.92
3908 7725 9.694520 CAGAAGATACATTCTAACAAACATTCG 57.305 33.333 0.00 0.00 37.43 3.34
4182 7999 7.396540 AGATGTATTTGAAAGGGATGTTGAC 57.603 36.000 0.00 0.00 0.00 3.18
4345 8162 4.154195 CAGTAAAGCAAAATGGTAGCTCGT 59.846 41.667 0.00 0.00 37.70 4.18
4350 8167 2.643551 CAAAATGGTAGCTCGTGGGAT 58.356 47.619 0.00 0.00 0.00 3.85
4775 8592 3.738982 TCGAAGCAATCAAAGTTCTCCA 58.261 40.909 0.00 0.00 0.00 3.86
4931 8830 4.597032 CCACTTTTCTGGCACCCA 57.403 55.556 0.00 0.00 0.00 4.51
5096 9008 6.127980 GCCTGTAGAACCTTTTGAACCTAATC 60.128 42.308 0.00 0.00 0.00 1.75
5403 10218 4.036971 CCTTGAGAAGGTACTATCCTCGTG 59.963 50.000 0.00 0.00 43.95 4.35
5477 10294 4.399303 CCATGTCATTTGTCCCCTTTCTAC 59.601 45.833 0.00 0.00 0.00 2.59
5787 13384 7.311364 TCCAACAGCCTTTATAAAATACGAC 57.689 36.000 0.00 0.00 0.00 4.34
5824 13421 4.620982 ACTCTTGTGCAATAAAAACTGGC 58.379 39.130 0.00 0.00 0.00 4.85
5825 13422 3.988819 TCTTGTGCAATAAAAACTGGCC 58.011 40.909 0.00 0.00 0.00 5.36
5904 13534 2.582172 TGATGATTTCCCACTGTCCCAT 59.418 45.455 0.00 0.00 0.00 4.00
5916 13546 2.700897 ACTGTCCCATAGTGGTAGCATC 59.299 50.000 0.00 0.00 35.17 3.91
5920 13550 2.639347 TCCCATAGTGGTAGCATCATGG 59.361 50.000 21.90 21.90 35.17 3.66
6016 13653 8.853077 TTCCATGCTTAATATCATACCTCAAG 57.147 34.615 0.00 0.00 0.00 3.02
6106 13755 5.817816 ACTTTTTCACTTCAGTACCTCTGTG 59.182 40.000 0.00 0.00 43.97 3.66
6137 13786 8.535335 ACTAGAGCTTAATTTCTTCTGTGATCA 58.465 33.333 0.00 0.00 0.00 2.92
6198 13847 5.200483 GGAATGGTTTTATCTGGATGGTCA 58.800 41.667 0.00 0.00 0.00 4.02
6249 13898 1.657751 GGGAGAACAAATCGGCAGCC 61.658 60.000 0.00 0.00 0.00 4.85
6266 13915 2.169789 CCTCTTCATCCAGTGCGCG 61.170 63.158 0.00 0.00 0.00 6.86
6464 14116 1.825090 TAGCAGTCGTTCCGGTCTTA 58.175 50.000 0.00 0.00 0.00 2.10
6564 14216 7.509318 ACTTATCTATGTGGTGATGTTAGGCTA 59.491 37.037 0.00 0.00 0.00 3.93
6569 14221 4.769688 TGTGGTGATGTTAGGCTAATGAG 58.230 43.478 10.65 0.00 0.00 2.90
6752 14405 8.133627 AGAATGGATGATAATTTTTGCTCTTCG 58.866 33.333 0.00 0.00 0.00 3.79
6776 14429 7.760794 TCGTTCTGTATCGTATTGGTAATGTTT 59.239 33.333 0.00 0.00 0.00 2.83
6777 14430 8.385111 CGTTCTGTATCGTATTGGTAATGTTTT 58.615 33.333 0.00 0.00 0.00 2.43
6794 14447 3.062042 GTTTTATCGGGTGAACGTCAGT 58.938 45.455 0.00 0.00 34.94 3.41
6808 14461 0.034089 GTCAGTTGGGAGGGGAATGG 60.034 60.000 0.00 0.00 0.00 3.16
6832 14485 3.776043 GCGAATGCTTTTTCTTGGTTG 57.224 42.857 0.00 0.00 38.39 3.77
6833 14486 3.123050 GCGAATGCTTTTTCTTGGTTGT 58.877 40.909 0.00 0.00 38.39 3.32
6834 14487 3.555547 GCGAATGCTTTTTCTTGGTTGTT 59.444 39.130 0.00 0.00 38.39 2.83
6835 14488 4.550639 GCGAATGCTTTTTCTTGGTTGTTG 60.551 41.667 0.00 0.00 38.39 3.33
6836 14489 4.550639 CGAATGCTTTTTCTTGGTTGTTGC 60.551 41.667 0.00 0.00 0.00 4.17
6837 14490 3.608316 TGCTTTTTCTTGGTTGTTGCT 57.392 38.095 0.00 0.00 0.00 3.91
6838 14491 3.520569 TGCTTTTTCTTGGTTGTTGCTC 58.479 40.909 0.00 0.00 0.00 4.26
6839 14492 2.535574 GCTTTTTCTTGGTTGTTGCTCG 59.464 45.455 0.00 0.00 0.00 5.03
6840 14493 3.769536 CTTTTTCTTGGTTGTTGCTCGT 58.230 40.909 0.00 0.00 0.00 4.18
6841 14494 2.842208 TTTCTTGGTTGTTGCTCGTG 57.158 45.000 0.00 0.00 0.00 4.35
6853 14506 4.251760 CTCGTGAGCTCAAACGCT 57.748 55.556 20.19 0.00 44.33 5.07
6854 14507 2.522060 CTCGTGAGCTCAAACGCTT 58.478 52.632 20.19 0.00 41.08 4.68
6855 14508 0.861837 CTCGTGAGCTCAAACGCTTT 59.138 50.000 20.19 0.00 41.08 3.51
6856 14509 1.261619 CTCGTGAGCTCAAACGCTTTT 59.738 47.619 20.19 0.00 41.08 2.27
6877 14535 1.068264 GGCTGGCTGTTTTAGTTGCTC 60.068 52.381 0.00 0.00 0.00 4.26
6878 14536 1.400242 GCTGGCTGTTTTAGTTGCTCG 60.400 52.381 0.00 0.00 0.00 5.03
6885 14543 4.083802 GCTGTTTTAGTTGCTCGTGAGATT 60.084 41.667 0.00 0.00 40.84 2.40
6886 14544 5.560953 GCTGTTTTAGTTGCTCGTGAGATTT 60.561 40.000 0.00 0.00 40.84 2.17
6887 14545 6.371809 TGTTTTAGTTGCTCGTGAGATTTT 57.628 33.333 0.00 0.00 40.84 1.82
6888 14546 6.198687 TGTTTTAGTTGCTCGTGAGATTTTG 58.801 36.000 0.00 0.00 40.84 2.44
6889 14547 2.977405 AGTTGCTCGTGAGATTTTGC 57.023 45.000 0.00 0.00 40.84 3.68
6890 14548 2.498167 AGTTGCTCGTGAGATTTTGCT 58.502 42.857 0.00 0.00 40.84 3.91
6892 14550 1.159285 TGCTCGTGAGATTTTGCTGG 58.841 50.000 0.00 0.00 40.84 4.85
6893 14551 0.179179 GCTCGTGAGATTTTGCTGGC 60.179 55.000 0.00 0.00 40.84 4.85
6894 14552 1.446907 CTCGTGAGATTTTGCTGGCT 58.553 50.000 0.00 0.00 40.84 4.75
6895 14553 1.129998 CTCGTGAGATTTTGCTGGCTG 59.870 52.381 0.00 0.00 40.84 4.85
6896 14554 0.877071 CGTGAGATTTTGCTGGCTGT 59.123 50.000 0.00 0.00 0.00 4.40
6897 14555 2.076100 CGTGAGATTTTGCTGGCTGTA 58.924 47.619 0.00 0.00 0.00 2.74
6898 14556 2.483877 CGTGAGATTTTGCTGGCTGTAA 59.516 45.455 0.00 0.00 0.00 2.41
6899 14557 3.425359 CGTGAGATTTTGCTGGCTGTAAG 60.425 47.826 0.00 0.00 0.00 2.34
6902 14560 4.022935 TGAGATTTTGCTGGCTGTAAGTTG 60.023 41.667 0.00 0.00 35.30 3.16
6903 14561 3.891366 AGATTTTGCTGGCTGTAAGTTGT 59.109 39.130 0.00 0.00 35.30 3.32
6904 14562 3.708563 TTTTGCTGGCTGTAAGTTGTC 57.291 42.857 0.00 0.00 35.30 3.18
6905 14563 2.340210 TTGCTGGCTGTAAGTTGTCA 57.660 45.000 0.00 0.00 35.30 3.58
6906 14564 2.566833 TGCTGGCTGTAAGTTGTCAT 57.433 45.000 0.00 0.00 35.30 3.06
6907 14565 2.862541 TGCTGGCTGTAAGTTGTCATT 58.137 42.857 0.00 0.00 35.30 2.57
6910 14612 3.983344 GCTGGCTGTAAGTTGTCATTTTG 59.017 43.478 0.00 0.00 35.30 2.44
6913 14615 5.971763 TGGCTGTAAGTTGTCATTTTGTTT 58.028 33.333 0.00 0.00 35.30 2.83
6974 14677 4.164413 GCCAACTAAGAGGGTCCTATTTCT 59.836 45.833 2.01 0.00 0.00 2.52
7100 14831 4.217550 GGCAGCAAATAACAGAACTACCAA 59.782 41.667 0.00 0.00 0.00 3.67
7135 14976 5.063180 ACACACATATCCAATGCAACAAG 57.937 39.130 0.00 0.00 0.00 3.16
7249 15091 3.902881 ACAGAATGCCTTCCAGTAGAG 57.097 47.619 0.00 0.00 42.53 2.43
7250 15092 3.445008 ACAGAATGCCTTCCAGTAGAGA 58.555 45.455 0.00 0.00 42.53 3.10
7283 15125 4.913924 GCAACAGAATCACATCAACAGTTC 59.086 41.667 0.00 0.00 0.00 3.01
7292 15134 2.872245 ACATCAACAGTTCAGGAACACG 59.128 45.455 14.06 7.35 43.47 4.49
7322 15164 3.365969 CGCACAAGGAAACCTACAATTCC 60.366 47.826 0.00 0.00 44.45 3.01
7361 15211 6.270815 CAAATGCATCCTCAAGAAATCGAAT 58.729 36.000 0.00 0.00 0.00 3.34
7381 15231 7.535139 TCGAATAGGGAAACAAAATCAATCAC 58.465 34.615 0.00 0.00 0.00 3.06
7382 15232 6.751888 CGAATAGGGAAACAAAATCAATCACC 59.248 38.462 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.159198 CCCTTTCATCCAATCAAAGGCG 60.159 50.000 4.43 0.00 43.39 5.52
101 102 7.443575 CCACCCTTAGTTTTCATCTATGATCAG 59.556 40.741 0.09 0.00 36.56 2.90
126 127 1.366854 GGTTCTTCGCCGATGGTTCC 61.367 60.000 0.00 0.00 0.00 3.62
138 139 5.470047 TCCTTCTACTCAGTTGGTTCTTC 57.530 43.478 0.00 0.00 0.00 2.87
149 150 5.105064 CGGGTTTTTAGGATCCTTCTACTCA 60.105 44.000 22.03 0.00 0.00 3.41
162 163 8.573885 AGATTTTTCTTTACTCGGGTTTTTAGG 58.426 33.333 0.00 0.00 0.00 2.69
204 205 8.668510 ACTGTCATGACATTGGATTCTTATAC 57.331 34.615 28.00 0.00 41.01 1.47
250 251 9.345517 CTACTACCATTTCATGTGTTTTCAATG 57.654 33.333 0.00 0.00 0.00 2.82
267 268 6.152154 GCCAACCAAACAAATACTACTACCAT 59.848 38.462 0.00 0.00 0.00 3.55
399 400 7.420184 TCATGCGGTCTATTTTGTATGTATG 57.580 36.000 0.00 0.00 0.00 2.39
430 2716 9.829507 TTGATTTTGTGTGACTGGAAATAAATT 57.170 25.926 0.00 0.00 0.00 1.82
473 2759 4.044308 TCCTGGCAATATTGGAGGAGTTA 58.956 43.478 17.02 0.00 0.00 2.24
474 2760 2.852449 TCCTGGCAATATTGGAGGAGTT 59.148 45.455 17.02 0.00 0.00 3.01
475 2761 2.441001 CTCCTGGCAATATTGGAGGAGT 59.559 50.000 17.02 0.00 43.35 3.85
491 2777 6.421801 GTCAATTTGGTTTGAACATTCTCCTG 59.578 38.462 0.00 0.00 37.36 3.86
500 2786 6.578944 AGTTTAGGGTCAATTTGGTTTGAAC 58.421 36.000 0.00 0.00 41.61 3.18
547 2834 8.260818 TCCAGTCTAGAGGTGATAAAATTCAAG 58.739 37.037 0.00 0.00 0.00 3.02
550 2837 7.213678 CCTCCAGTCTAGAGGTGATAAAATTC 58.786 42.308 6.18 0.00 45.05 2.17
583 2900 7.329471 AGTCTTTTCTTCTTTTGCTCAAACAAC 59.671 33.333 0.00 0.00 0.00 3.32
600 2917 4.841246 TCTTTGCTCCCTCTAGTCTTTTCT 59.159 41.667 0.00 0.00 0.00 2.52
601 2918 5.153950 TCTTTGCTCCCTCTAGTCTTTTC 57.846 43.478 0.00 0.00 0.00 2.29
620 2937 3.243359 TGACCCTTGGCTTTGAATCTT 57.757 42.857 0.00 0.00 0.00 2.40
649 2968 1.680314 GCTGGGAGCCTTTTGGGAG 60.680 63.158 0.00 0.00 40.82 4.30
857 3184 2.016096 GCTTTGATGAGGTGAGAGGCC 61.016 57.143 0.00 0.00 0.00 5.19
861 3191 1.556911 GGAGGCTTTGATGAGGTGAGA 59.443 52.381 0.00 0.00 0.00 3.27
900 3231 0.990818 AGATTTGGGAGGAGGGGAGC 60.991 60.000 0.00 0.00 0.00 4.70
1314 3677 0.111253 AGCAAGGGGCCATGTATAGC 59.889 55.000 4.39 0.00 46.50 2.97
1355 3721 5.615925 AGATTCGAACTAAACCTAGGCAT 57.384 39.130 9.30 0.00 0.00 4.40
1507 3874 6.158695 AGAGGAAAACCTTGGATAGATTAGCA 59.841 38.462 0.00 0.00 0.00 3.49
1623 3990 2.671130 AGCCAAACAAAGGTGTGTTG 57.329 45.000 0.00 0.00 40.86 3.33
1661 4028 9.944376 ATTGACTATATGTAAGTGACAACAAGT 57.056 29.630 0.00 0.00 42.78 3.16
1731 4116 9.074443 GCACAATGAAATTTTTGACAAAACAAT 57.926 25.926 12.86 2.69 34.63 2.71
1780 4172 3.870723 TCGTGACAGTGCATAAAACAC 57.129 42.857 0.00 0.00 38.35 3.32
1798 4190 3.448686 ACCGTGAAGATATCAGCTTTCG 58.551 45.455 5.32 2.37 39.19 3.46
1804 4196 5.776173 AGGAACTACCGTGAAGATATCAG 57.224 43.478 5.32 0.00 44.74 2.90
2097 4521 5.443283 AGCAGGCATCAATTATGAAGAAGA 58.557 37.500 0.00 0.00 39.49 2.87
2131 4556 2.925724 ACCTGACAAAATCAACGGTGA 58.074 42.857 5.17 5.17 35.15 4.02
2155 4580 6.662616 CCTAAATTTCAGAATAGCATCACGG 58.337 40.000 0.00 0.00 0.00 4.94
2608 5037 7.987750 TTTAGCCATGTTATCAGTACACAAA 57.012 32.000 0.00 0.00 0.00 2.83
2653 5086 3.680789 GCATGTGTCCTTACGTAATTGC 58.319 45.455 8.76 6.27 0.00 3.56
2682 5115 7.505585 AGAAGGTCCAGTTTCAAAATGACAATA 59.494 33.333 0.00 0.00 0.00 1.90
2814 5249 2.285220 CGACATGCTGCAGGTTGTATAC 59.715 50.000 21.56 6.45 0.00 1.47
2864 5299 1.655484 TGTCAACCATATGCAGAGCG 58.345 50.000 0.00 0.00 0.00 5.03
2868 5303 6.157904 TCAAACAAATGTCAACCATATGCAG 58.842 36.000 0.00 0.00 31.97 4.41
2919 5354 9.604626 CTTATTTTTCAGCTTCAAGTCAACTAG 57.395 33.333 0.00 0.00 0.00 2.57
2954 5397 7.602644 TGTACAAGTTTCCAGATTATGTCACTC 59.397 37.037 0.00 0.00 0.00 3.51
3030 5473 6.983307 CACTTGGGTTTTGACAATTGATGTAA 59.017 34.615 13.59 0.00 44.12 2.41
3121 5573 6.316890 GGTTAAAACAACAGTGAGGTACAGAA 59.683 38.462 0.00 0.00 0.00 3.02
3155 6435 5.586243 ACAGTTGACAGATGCGCTATAAATT 59.414 36.000 9.73 0.00 0.00 1.82
3260 6553 6.996509 ACCTGCAAAATAGAATGACAATTGT 58.003 32.000 11.78 11.78 0.00 2.71
3469 6887 4.060038 ACCAACATGATACTTAGCCTCG 57.940 45.455 0.00 0.00 0.00 4.63
3674 7096 6.587608 CAGCATCCAGTTTAAATGACTTTTCC 59.412 38.462 0.00 0.00 0.00 3.13
3737 7546 5.297547 TCTGTTTGAGCGACAAGTAATTCT 58.702 37.500 0.00 0.00 39.77 2.40
3740 7549 4.997395 ACATCTGTTTGAGCGACAAGTAAT 59.003 37.500 0.00 0.00 39.77 1.89
3807 7616 2.305009 CTACCTCCGTCCGGAATTAGT 58.695 52.381 5.23 2.90 44.66 2.24
3808 7617 2.305009 ACTACCTCCGTCCGGAATTAG 58.695 52.381 5.23 13.89 44.66 1.73
3819 7628 7.063898 CAGCATTCATAAATGATACTACCTCCG 59.936 40.741 0.00 0.00 44.25 4.63
3821 7630 7.388776 TGCAGCATTCATAAATGATACTACCTC 59.611 37.037 0.00 0.00 44.25 3.85
3822 7631 7.226441 TGCAGCATTCATAAATGATACTACCT 58.774 34.615 0.00 0.00 44.25 3.08
3823 7632 7.439157 TGCAGCATTCATAAATGATACTACC 57.561 36.000 0.00 0.00 44.25 3.18
3852 7661 2.749621 ACTCGCATTTTGAGGATTCCAC 59.250 45.455 5.29 0.00 37.79 4.02
3908 7725 4.808364 TGTGATTACCAAAAGCAAGCAAAC 59.192 37.500 0.00 0.00 0.00 2.93
4005 7822 5.438761 AATAATGCCATTAAAGCTCGTCC 57.561 39.130 0.47 0.00 0.00 4.79
4006 7823 9.463443 AATTAAATAATGCCATTAAAGCTCGTC 57.537 29.630 0.47 0.00 0.00 4.20
4050 7867 1.893544 TTGCCCAAACAATGCAATGG 58.106 45.000 6.73 3.05 39.86 3.16
4182 7999 5.527033 TGAGCATACTGATCAAGATCTTCG 58.473 41.667 4.57 1.84 40.12 3.79
4345 8162 5.051409 TCATGATCATTACTGCAATCCCA 57.949 39.130 5.16 0.00 0.00 4.37
4350 8167 4.577693 GGCTCTTCATGATCATTACTGCAA 59.422 41.667 5.16 0.00 0.00 4.08
4558 8375 4.946478 AGTTCCCTATTTCCTGAGATCG 57.054 45.455 0.00 0.00 0.00 3.69
4775 8592 6.440647 TCACCTGTAGTTCTTGTAATCATCCT 59.559 38.462 0.00 0.00 0.00 3.24
4819 8636 7.444299 AGAAACATAGGCAAAAACAATGTGAT 58.556 30.769 0.00 0.00 31.44 3.06
4961 8862 1.482593 CCGGTGAGATAGGCAAGAACT 59.517 52.381 0.00 0.00 0.00 3.01
4962 8863 1.941325 CCGGTGAGATAGGCAAGAAC 58.059 55.000 0.00 0.00 0.00 3.01
5096 9008 3.067833 CAGAGCAGACATAGCATGATGG 58.932 50.000 0.00 0.00 0.00 3.51
5175 9097 7.324616 GCATTCAGTTTTAGTTTCATGTCAGAC 59.675 37.037 0.00 0.00 0.00 3.51
5477 10294 0.954452 GAAACACAAGGGCCACAGAG 59.046 55.000 6.18 0.00 0.00 3.35
5787 13384 5.915758 GCACAAGAGTCGTCATACCTAATAG 59.084 44.000 0.00 0.00 0.00 1.73
5794 13391 6.403333 TTTATTGCACAAGAGTCGTCATAC 57.597 37.500 0.00 0.00 0.00 2.39
5904 13534 6.070481 TCAGTTTTACCATGATGCTACCACTA 60.070 38.462 0.00 0.00 0.00 2.74
6016 13653 4.689812 CAGCAGAGCAATCTATCCATGTAC 59.310 45.833 0.00 0.00 0.00 2.90
6106 13755 7.542824 ACAGAAGAAATTAAGCTCTAGTCGTTC 59.457 37.037 0.00 0.00 0.00 3.95
6137 13786 2.154462 CGTCAAACTCTTCCCTGCATT 58.846 47.619 0.00 0.00 0.00 3.56
6249 13898 1.446792 ACGCGCACTGGATGAAGAG 60.447 57.895 5.73 0.00 0.00 2.85
6458 14110 7.820872 AGCTATTATCTCTAGACGAGTAAGACC 59.179 40.741 0.00 0.00 40.75 3.85
6464 14116 6.993308 TCAACAGCTATTATCTCTAGACGAGT 59.007 38.462 0.00 0.00 40.75 4.18
6564 14216 7.235193 AGTCACTGATAGCTCAATATCCTCATT 59.765 37.037 0.00 0.00 32.18 2.57
6569 14221 6.350612 GGGTAGTCACTGATAGCTCAATATCC 60.351 46.154 0.00 0.00 32.18 2.59
6776 14429 2.610976 CCAACTGACGTTCACCCGATAA 60.611 50.000 0.00 0.00 0.00 1.75
6777 14430 1.067425 CCAACTGACGTTCACCCGATA 60.067 52.381 0.00 0.00 0.00 2.92
6794 14447 1.387737 CTTGCCATTCCCCTCCCAA 59.612 57.895 0.00 0.00 0.00 4.12
6836 14489 4.251760 AGCGTTTGAGCTCACGAG 57.748 55.556 25.70 16.45 45.67 4.18
6853 14506 3.791245 CAACTAAAACAGCCAGCCAAAA 58.209 40.909 0.00 0.00 0.00 2.44
6854 14507 2.482839 GCAACTAAAACAGCCAGCCAAA 60.483 45.455 0.00 0.00 0.00 3.28
6855 14508 1.068434 GCAACTAAAACAGCCAGCCAA 59.932 47.619 0.00 0.00 0.00 4.52
6856 14509 0.673437 GCAACTAAAACAGCCAGCCA 59.327 50.000 0.00 0.00 0.00 4.75
6877 14535 0.877071 ACAGCCAGCAAAATCTCACG 59.123 50.000 0.00 0.00 0.00 4.35
6878 14536 3.503748 ACTTACAGCCAGCAAAATCTCAC 59.496 43.478 0.00 0.00 0.00 3.51
6885 14543 2.649190 TGACAACTTACAGCCAGCAAA 58.351 42.857 0.00 0.00 0.00 3.68
6886 14544 2.340210 TGACAACTTACAGCCAGCAA 57.660 45.000 0.00 0.00 0.00 3.91
6887 14545 2.566833 ATGACAACTTACAGCCAGCA 57.433 45.000 0.00 0.00 0.00 4.41
6888 14546 3.923017 AAATGACAACTTACAGCCAGC 57.077 42.857 0.00 0.00 0.00 4.85
6889 14547 5.186996 ACAAAATGACAACTTACAGCCAG 57.813 39.130 0.00 0.00 0.00 4.85
6890 14548 5.590530 AACAAAATGACAACTTACAGCCA 57.409 34.783 0.00 0.00 0.00 4.75
6892 14550 7.518731 TTCAAACAAAATGACAACTTACAGC 57.481 32.000 0.00 0.00 0.00 4.40
6893 14551 9.904647 CATTTCAAACAAAATGACAACTTACAG 57.095 29.630 3.81 0.00 45.40 2.74
6894 14552 8.386606 GCATTTCAAACAAAATGACAACTTACA 58.613 29.630 12.26 0.00 45.40 2.41
6895 14553 8.752061 GCATTTCAAACAAAATGACAACTTAC 57.248 30.769 12.26 0.00 45.40 2.34
6903 14561 3.806521 CGGTGGCATTTCAAACAAAATGA 59.193 39.130 12.26 0.00 45.40 2.57
6904 14562 3.059051 CCGGTGGCATTTCAAACAAAATG 60.059 43.478 0.00 5.25 45.36 2.32
6905 14563 3.137533 CCGGTGGCATTTCAAACAAAAT 58.862 40.909 0.00 0.00 0.00 1.82
6906 14564 2.555199 CCGGTGGCATTTCAAACAAAA 58.445 42.857 0.00 0.00 0.00 2.44
6907 14565 2.231215 CCGGTGGCATTTCAAACAAA 57.769 45.000 0.00 0.00 0.00 2.83
7090 14821 4.373156 AGGTTGCTGAATTGGTAGTTCT 57.627 40.909 0.00 0.00 0.00 3.01
7100 14831 5.590259 GGATATGTGTGTTAGGTTGCTGAAT 59.410 40.000 0.00 0.00 0.00 2.57
7135 14976 1.591158 TCAACGAGCGAACTTGTTCAC 59.409 47.619 13.05 4.16 45.75 3.18
7249 15091 1.785041 TTCTGTTGCGGCTGCTGTTC 61.785 55.000 20.27 6.94 43.34 3.18
7250 15092 1.174712 ATTCTGTTGCGGCTGCTGTT 61.175 50.000 20.27 0.00 43.34 3.16
7283 15125 1.154205 GCGGATGGATCGTGTTCCTG 61.154 60.000 0.00 0.00 36.68 3.86
7292 15134 1.401905 GTTTCCTTGTGCGGATGGATC 59.598 52.381 0.00 0.00 32.02 3.36
7361 15211 4.082463 GCGGTGATTGATTTTGTTTCCCTA 60.082 41.667 0.00 0.00 0.00 3.53
7389 15239 0.234884 CCGGAAATTAGCGCGGATTC 59.765 55.000 8.83 5.74 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.