Multiple sequence alignment - TraesCS2D01G194200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G194200 chr2D 100.000 6094 0 0 1 6094 139114039 139107946 0.000000e+00 11254.0
1 TraesCS2D01G194200 chr2D 88.764 356 37 2 5315 5667 239981857 239982212 3.370000e-117 433.0
2 TraesCS2D01G194200 chr2D 99.038 104 1 0 5796 5899 271146259 271146362 2.900000e-43 187.0
3 TraesCS2D01G194200 chr2D 87.931 116 9 5 4621 4734 296173772 296173660 1.380000e-26 132.0
4 TraesCS2D01G194200 chr2D 97.561 41 0 1 3860 3900 139110138 139110099 1.100000e-07 69.4
5 TraesCS2D01G194200 chr2D 97.561 41 0 1 3902 3941 139110180 139110140 1.100000e-07 69.4
6 TraesCS2D01G194200 chr2D 96.875 32 1 0 5899 5930 246245774 246245805 3.000000e-03 54.7
7 TraesCS2D01G194200 chr2A 88.055 2704 158 68 2 2619 161849204 161851828 0.000000e+00 3051.0
8 TraesCS2D01G194200 chr2A 97.794 1269 25 2 2634 3900 161851811 161853078 0.000000e+00 2185.0
9 TraesCS2D01G194200 chr2A 97.425 699 9 4 3935 4632 161853242 161853932 0.000000e+00 1182.0
10 TraesCS2D01G194200 chr2A 94.859 603 25 3 4718 5315 161853934 161854535 0.000000e+00 937.0
11 TraesCS2D01G194200 chr2B 87.853 2231 103 56 457 2619 197726789 197724659 0.000000e+00 2464.0
12 TraesCS2D01G194200 chr2B 94.090 1269 68 4 2634 3900 197724676 197723413 0.000000e+00 1921.0
13 TraesCS2D01G194200 chr2B 90.488 389 22 9 4935 5315 197722148 197721767 3.280000e-137 499.0
14 TraesCS2D01G194200 chr2B 88.696 230 15 7 4399 4618 197722647 197722419 2.800000e-68 270.0
15 TraesCS2D01G194200 chr2B 90.909 99 9 0 3725 3823 314750366 314750268 3.830000e-27 134.0
16 TraesCS2D01G194200 chr2B 91.667 48 4 0 4354 4401 693441532 693441485 3.940000e-07 67.6
17 TraesCS2D01G194200 chr1D 84.095 503 62 14 5307 5799 212523606 212523112 2.570000e-128 470.0
18 TraesCS2D01G194200 chr1D 94.643 168 9 0 5927 6094 212523113 212522946 1.680000e-65 261.0
19 TraesCS2D01G194200 chr1D 94.068 118 5 2 5796 5912 227635651 227635535 1.750000e-40 178.0
20 TraesCS2D01G194200 chr1D 93.220 118 6 2 5796 5912 158975884 158975768 8.120000e-39 172.0
21 TraesCS2D01G194200 chr1D 95.455 44 2 0 4354 4397 378551908 378551865 3.050000e-08 71.3
22 TraesCS2D01G194200 chr1D 93.182 44 3 0 4354 4397 357266378 357266421 1.420000e-06 65.8
23 TraesCS2D01G194200 chr1D 93.023 43 3 0 4354 4396 29987209 29987251 5.100000e-06 63.9
24 TraesCS2D01G194200 chr4D 89.944 358 34 2 5314 5670 231209825 231209469 1.550000e-125 460.0
25 TraesCS2D01G194200 chr4D 88.950 362 38 2 5308 5667 297781113 297781474 4.330000e-121 446.0
26 TraesCS2D01G194200 chr4D 92.814 167 12 0 5928 6094 190475383 190475549 6.100000e-60 243.0
27 TraesCS2D01G194200 chr4D 93.443 122 6 2 5796 5916 199937701 199937821 4.850000e-41 180.0
28 TraesCS2D01G194200 chr4D 91.837 98 6 2 4623 4720 479997567 479997662 1.070000e-27 135.0
29 TraesCS2D01G194200 chr4D 97.727 44 1 0 4354 4397 347523985 347523942 6.550000e-10 76.8
30 TraesCS2D01G194200 chr4D 93.333 45 3 0 4353 4397 284973470 284973426 3.940000e-07 67.6
31 TraesCS2D01G194200 chr7D 88.674 362 38 2 5312 5670 197924126 197923765 7.250000e-119 438.0
32 TraesCS2D01G194200 chr7D 99.038 104 1 0 5796 5899 328626533 328626636 2.900000e-43 187.0
33 TraesCS2D01G194200 chr7D 94.444 90 5 0 4633 4722 116592587 116592498 8.240000e-29 139.0
34 TraesCS2D01G194200 chr7D 95.556 45 2 0 4353 4397 401789619 401789663 8.470000e-09 73.1
35 TraesCS2D01G194200 chr6D 88.764 356 38 2 5315 5670 126838303 126837950 9.380000e-118 435.0
36 TraesCS2D01G194200 chr6D 97.059 102 3 0 5796 5897 206213169 206213270 8.120000e-39 172.0
37 TraesCS2D01G194200 chr6D 91.935 124 6 4 5796 5917 207557924 207557803 2.920000e-38 171.0
38 TraesCS2D01G194200 chr6D 90.244 82 5 2 5796 5875 84844901 84844821 3.000000e-18 104.0
39 TraesCS2D01G194200 chr6D 93.023 43 3 0 4354 4396 16913611 16913653 5.100000e-06 63.9
40 TraesCS2D01G194200 chr6D 92.500 40 3 0 4354 4393 70435881 70435920 2.370000e-04 58.4
41 TraesCS2D01G194200 chrUn 88.056 360 39 2 5315 5670 268924259 268923900 2.030000e-114 424.0
42 TraesCS2D01G194200 chrUn 94.068 118 5 2 5796 5912 115185554 115185438 1.750000e-40 178.0
43 TraesCS2D01G194200 chrUn 93.220 118 6 2 5796 5912 115199103 115198987 8.120000e-39 172.0
44 TraesCS2D01G194200 chrUn 94.444 90 5 0 4636 4725 197752479 197752390 8.240000e-29 139.0
45 TraesCS2D01G194200 chrUn 95.455 44 2 0 4354 4397 12289435 12289392 3.050000e-08 71.3
46 TraesCS2D01G194200 chr5D 87.500 360 44 1 5309 5667 551354605 551354964 1.220000e-111 414.0
47 TraesCS2D01G194200 chr5D 87.500 360 44 1 5309 5667 551390949 551391308 1.220000e-111 414.0
48 TraesCS2D01G194200 chr5D 92.814 167 12 0 5924 6090 256744563 256744729 6.100000e-60 243.0
49 TraesCS2D01G194200 chr5D 98.039 102 2 0 5796 5897 184353709 184353810 1.750000e-40 178.0
50 TraesCS2D01G194200 chr5D 91.753 97 7 1 4635 4730 111788729 111788633 3.830000e-27 134.0
51 TraesCS2D01G194200 chr5D 100.000 29 0 0 5899 5927 156368893 156368865 3.000000e-03 54.7
52 TraesCS2D01G194200 chr4B 94.737 171 6 3 5927 6094 182245528 182245358 4.680000e-66 263.0
53 TraesCS2D01G194200 chr4B 93.478 92 6 0 4635 4726 104337415 104337324 2.960000e-28 137.0
54 TraesCS2D01G194200 chr4B 94.382 89 5 0 4636 4724 491017641 491017729 2.960000e-28 137.0
55 TraesCS2D01G194200 chr4B 95.349 86 4 0 4636 4721 643774332 643774247 2.960000e-28 137.0
56 TraesCS2D01G194200 chr1A 94.340 159 9 0 5927 6085 283847912 283847754 1.700000e-60 244.0
57 TraesCS2D01G194200 chr1A 95.455 44 2 0 4354 4397 67695598 67695555 3.050000e-08 71.3
58 TraesCS2D01G194200 chr1A 95.455 44 2 0 4354 4397 529327101 529327058 3.050000e-08 71.3
59 TraesCS2D01G194200 chr1A 95.349 43 2 0 4354 4396 85910450 85910492 1.100000e-07 69.4
60 TraesCS2D01G194200 chr5B 91.954 174 11 2 5924 6094 455142236 455142409 2.190000e-59 241.0
61 TraesCS2D01G194200 chr5B 88.636 132 15 0 5665 5796 455142106 455142237 1.760000e-35 161.0
62 TraesCS2D01G194200 chr3D 93.293 164 10 1 5927 6090 593483646 593483484 2.190000e-59 241.0
63 TraesCS2D01G194200 chr3D 92.262 168 13 0 5927 6094 519709009 519708842 7.890000e-59 239.0
64 TraesCS2D01G194200 chr3A 91.765 170 14 0 5924 6093 341636113 341636282 2.840000e-58 237.0
65 TraesCS2D01G194200 chr6A 91.935 124 7 3 5796 5917 303913883 303914005 2.920000e-38 171.0
66 TraesCS2D01G194200 chr7A 89.623 106 9 2 4627 4730 501073974 501073869 3.830000e-27 134.0
67 TraesCS2D01G194200 chr3B 92.982 57 4 0 3729 3785 309518231 309518287 3.910000e-12 84.2
68 TraesCS2D01G194200 chr4A 95.455 44 2 0 4354 4397 692915994 692915951 3.050000e-08 71.3
69 TraesCS2D01G194200 chr1B 100.000 28 0 0 5902 5929 215099569 215099542 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G194200 chr2D 139107946 139114039 6093 True 3797.60 11254 98.37400 1 6094 3 chr2D.!!$R2 6093
1 TraesCS2D01G194200 chr2A 161849204 161854535 5331 False 1838.75 3051 94.53325 2 5315 4 chr2A.!!$F1 5313
2 TraesCS2D01G194200 chr2B 197721767 197726789 5022 True 1288.50 2464 90.28175 457 5315 4 chr2B.!!$R3 4858
3 TraesCS2D01G194200 chr1D 212522946 212523606 660 True 365.50 470 89.36900 5307 6094 2 chr1D.!!$R4 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 951 0.246086 CCTGACTCCTGACTGACTGC 59.754 60.000 0.0 0.0 0.00 4.40 F
1299 1358 0.178929 ACGAGAAGAGGTGGGGTTCT 60.179 55.000 0.0 0.0 33.14 3.01 F
1448 1515 1.556911 CTGGTCCTAGTTGGCTGACAT 59.443 52.381 0.0 0.0 35.26 3.06 F
2680 2800 2.684843 GGCTCTTGACTGCTTGGCG 61.685 63.158 0.0 0.0 0.00 5.69 F
4156 4410 0.617413 CATCTGCTTCCCTGTGGTCT 59.383 55.000 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2027 1.257743 ACGCTGCCTCTCTTGTAGAA 58.742 50.00 0.00 0.00 32.46 2.10 R
3055 3175 1.363145 CGCAATTGGCCTGGCAAATG 61.363 55.00 21.67 15.74 40.31 2.32 R
3563 3684 4.491676 AGACATGTGAAAATGCAGCAATC 58.508 39.13 1.15 0.00 0.00 2.67 R
4634 5187 0.273781 TTATGGGGCAGAGGGGGTAT 59.726 55.00 0.00 0.00 0.00 2.73 R
5913 6566 0.178068 CCCTGGAACGTGATGTAGGG 59.822 60.00 8.61 8.61 37.59 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 1.188863 GGAAAAGATGCCATGCAGGT 58.811 50.000 0.00 0.00 43.65 4.00
45 47 1.491563 GCAGGTACGTGCAAGTTCG 59.508 57.895 30.20 1.00 43.41 3.95
46 48 1.897398 GCAGGTACGTGCAAGTTCGG 61.897 60.000 30.20 6.15 43.41 4.30
47 49 1.666872 AGGTACGTGCAAGTTCGGC 60.667 57.895 11.38 0.00 0.00 5.54
69 72 2.513897 GATCCGGCGGAAGGTTGG 60.514 66.667 34.58 0.00 34.34 3.77
78 81 2.650778 GAAGGTTGGCGGCCAAAG 59.349 61.111 34.17 0.00 45.73 2.77
80 83 1.866853 GAAGGTTGGCGGCCAAAGAG 61.867 60.000 34.17 0.00 45.73 2.85
83 86 2.283101 TTGGCGGCCAAAGAGCAT 60.283 55.556 31.03 0.00 40.92 3.79
92 95 1.442526 CCAAAGAGCATGCCTAGCCG 61.443 60.000 15.66 0.00 0.00 5.52
98 101 2.109799 CATGCCTAGCCGGTGAGG 59.890 66.667 17.05 17.05 44.97 3.86
140 151 3.928211 CGTGATTCAACGCTCTATTTGG 58.072 45.455 0.00 0.00 36.65 3.28
142 153 2.682856 TGATTCAACGCTCTATTTGGGC 59.317 45.455 0.00 0.00 0.00 5.36
143 154 2.192664 TTCAACGCTCTATTTGGGCA 57.807 45.000 0.00 0.00 0.00 5.36
144 155 2.418368 TCAACGCTCTATTTGGGCAT 57.582 45.000 0.00 0.00 0.00 4.40
145 156 2.722094 TCAACGCTCTATTTGGGCATT 58.278 42.857 0.00 0.00 0.00 3.56
147 158 4.265893 TCAACGCTCTATTTGGGCATTTA 58.734 39.130 0.00 0.00 0.00 1.40
149 160 5.359576 TCAACGCTCTATTTGGGCATTTATT 59.640 36.000 0.00 0.00 0.00 1.40
153 164 7.777095 ACGCTCTATTTGGGCATTTATTTTTA 58.223 30.769 0.00 0.00 0.00 1.52
154 165 8.421002 ACGCTCTATTTGGGCATTTATTTTTAT 58.579 29.630 0.00 0.00 0.00 1.40
155 166 8.915654 CGCTCTATTTGGGCATTTATTTTTATC 58.084 33.333 0.00 0.00 0.00 1.75
156 167 9.762933 GCTCTATTTGGGCATTTATTTTTATCA 57.237 29.630 0.00 0.00 0.00 2.15
188 199 3.132289 CGCTCTCCCACTTGATTTAGGTA 59.868 47.826 0.00 0.00 0.00 3.08
189 200 4.382685 CGCTCTCCCACTTGATTTAGGTAA 60.383 45.833 0.00 0.00 0.00 2.85
191 202 5.760743 GCTCTCCCACTTGATTTAGGTAATC 59.239 44.000 0.00 0.00 42.52 1.75
193 204 5.424252 TCTCCCACTTGATTTAGGTAATCGT 59.576 40.000 0.00 0.00 44.67 3.73
194 205 6.608405 TCTCCCACTTGATTTAGGTAATCGTA 59.392 38.462 0.00 0.00 44.67 3.43
206 217 5.113502 AGGTAATCGTATAACACGGTAGC 57.886 43.478 0.00 0.90 45.30 3.58
210 221 3.065233 AATCGTATAACACGGTAGCGTGA 59.935 43.478 43.48 28.06 45.30 4.35
212 223 3.411415 GTATAACACGGTAGCGTGACT 57.589 47.619 43.48 32.29 41.92 3.41
215 226 0.386476 AACACGGTAGCGTGACTTGA 59.614 50.000 43.48 0.00 41.92 3.02
216 227 0.386476 ACACGGTAGCGTGACTTGAA 59.614 50.000 43.48 0.00 41.92 2.69
217 228 1.202440 ACACGGTAGCGTGACTTGAAA 60.202 47.619 43.48 0.00 41.92 2.69
225 236 2.226437 AGCGTGACTTGAAATGCGAATT 59.774 40.909 0.00 0.00 33.43 2.17
234 245 6.373779 ACTTGAAATGCGAATTAGTGTCAAG 58.626 36.000 19.95 19.95 43.95 3.02
235 246 5.940192 TGAAATGCGAATTAGTGTCAAGT 57.060 34.783 0.00 0.00 0.00 3.16
236 247 5.927030 TGAAATGCGAATTAGTGTCAAGTC 58.073 37.500 0.00 0.00 0.00 3.01
239 250 4.990543 TGCGAATTAGTGTCAAGTCTTG 57.009 40.909 6.21 6.21 0.00 3.02
240 251 4.377021 TGCGAATTAGTGTCAAGTCTTGT 58.623 39.130 12.30 0.00 0.00 3.16
256 279 2.545106 TCTTGTAACGCTTTTTCCGGTC 59.455 45.455 0.00 0.00 0.00 4.79
259 282 2.681848 TGTAACGCTTTTTCCGGTCAAA 59.318 40.909 0.00 0.00 0.00 2.69
260 283 2.485266 AACGCTTTTTCCGGTCAAAG 57.515 45.000 18.41 18.41 33.77 2.77
261 284 1.385528 ACGCTTTTTCCGGTCAAAGT 58.614 45.000 21.55 7.98 33.27 2.66
262 285 1.064952 ACGCTTTTTCCGGTCAAAGTG 59.935 47.619 26.46 26.46 43.30 3.16
263 286 1.599419 CGCTTTTTCCGGTCAAAGTGG 60.599 52.381 23.19 14.96 37.02 4.00
264 287 1.868109 GCTTTTTCCGGTCAAAGTGGC 60.868 52.381 21.55 14.11 33.27 5.01
265 288 0.747852 TTTTTCCGGTCAAAGTGGCC 59.252 50.000 0.00 0.00 39.19 5.36
266 289 1.110518 TTTTCCGGTCAAAGTGGCCC 61.111 55.000 0.00 0.00 39.48 5.80
267 290 2.285889 TTTCCGGTCAAAGTGGCCCA 62.286 55.000 0.00 0.00 39.48 5.36
268 291 2.203422 CCGGTCAAAGTGGCCCAA 60.203 61.111 0.00 0.00 39.48 4.12
269 292 2.561037 CCGGTCAAAGTGGCCCAAC 61.561 63.158 0.00 0.00 39.48 3.77
278 301 2.080654 AGTGGCCCAACTTTGCTTTA 57.919 45.000 0.00 0.00 0.00 1.85
281 304 1.410882 TGGCCCAACTTTGCTTTACAC 59.589 47.619 0.00 0.00 0.00 2.90
286 309 5.163652 GGCCCAACTTTGCTTTACACTATAG 60.164 44.000 0.00 0.00 0.00 1.31
292 315 5.880887 ACTTTGCTTTACACTATAGCCTTCC 59.119 40.000 0.00 0.00 32.67 3.46
310 333 1.912731 TCCTGTTGCCCACAAGCTATA 59.087 47.619 0.00 0.00 36.16 1.31
319 346 3.447229 GCCCACAAGCTATACCATGTTTT 59.553 43.478 0.00 0.00 0.00 2.43
321 348 4.462483 CCCACAAGCTATACCATGTTTTGT 59.538 41.667 0.00 0.00 0.00 2.83
323 350 6.454795 CCACAAGCTATACCATGTTTTGTTT 58.545 36.000 0.00 0.00 0.00 2.83
386 419 6.526325 GCGTTGCATATTTGTATGAGTTTGAA 59.474 34.615 0.00 0.00 0.00 2.69
387 420 7.220683 GCGTTGCATATTTGTATGAGTTTGAAT 59.779 33.333 0.00 0.00 0.00 2.57
388 421 8.736742 CGTTGCATATTTGTATGAGTTTGAATC 58.263 33.333 0.00 0.00 0.00 2.52
389 422 8.736742 GTTGCATATTTGTATGAGTTTGAATCG 58.263 33.333 0.00 0.00 0.00 3.34
391 424 8.122330 TGCATATTTGTATGAGTTTGAATCGAC 58.878 33.333 0.00 0.00 0.00 4.20
392 425 7.587757 GCATATTTGTATGAGTTTGAATCGACC 59.412 37.037 0.00 0.00 0.00 4.79
393 426 8.830580 CATATTTGTATGAGTTTGAATCGACCT 58.169 33.333 0.00 0.00 0.00 3.85
394 427 6.721571 TTTGTATGAGTTTGAATCGACCTC 57.278 37.500 0.00 0.00 0.00 3.85
395 428 4.755411 TGTATGAGTTTGAATCGACCTCC 58.245 43.478 0.00 0.00 0.00 4.30
396 429 3.981071 ATGAGTTTGAATCGACCTCCA 57.019 42.857 0.00 0.00 0.00 3.86
398 431 4.079980 TGAGTTTGAATCGACCTCCAAA 57.920 40.909 0.00 0.00 0.00 3.28
399 432 4.651778 TGAGTTTGAATCGACCTCCAAAT 58.348 39.130 0.00 0.00 32.16 2.32
400 433 4.695455 TGAGTTTGAATCGACCTCCAAATC 59.305 41.667 0.00 0.00 32.16 2.17
401 434 3.684788 AGTTTGAATCGACCTCCAAATCG 59.315 43.478 0.00 0.00 39.72 3.34
405 438 3.938653 TCGACCTCCAAATCGATCG 57.061 52.632 9.36 9.36 42.18 3.69
406 439 1.385528 TCGACCTCCAAATCGATCGA 58.614 50.000 21.86 21.86 42.18 3.59
408 441 2.361119 TCGACCTCCAAATCGATCGATT 59.639 45.455 32.29 32.29 45.67 3.34
409 442 2.472861 CGACCTCCAAATCGATCGATTG 59.527 50.000 36.54 28.52 43.26 2.67
410 443 3.458189 GACCTCCAAATCGATCGATTGT 58.542 45.455 36.54 29.31 43.26 2.71
411 444 4.617959 GACCTCCAAATCGATCGATTGTA 58.382 43.478 36.54 24.78 43.26 2.41
433 466 9.976255 TTGTATCGTATGCTACAAATACAAAAC 57.024 29.630 8.55 5.29 40.33 2.43
434 467 8.322428 TGTATCGTATGCTACAAATACAAAACG 58.678 33.333 0.00 0.00 35.65 3.60
440 473 9.601971 GTATGCTACAAATACAAAACGAGAAAA 57.398 29.630 0.00 0.00 31.94 2.29
442 475 8.555166 TGCTACAAATACAAAACGAGAAAAAG 57.445 30.769 0.00 0.00 0.00 2.27
443 476 7.166804 TGCTACAAATACAAAACGAGAAAAAGC 59.833 33.333 0.00 0.00 0.00 3.51
444 477 7.166804 GCTACAAATACAAAACGAGAAAAAGCA 59.833 33.333 0.00 0.00 0.00 3.91
445 478 7.820044 ACAAATACAAAACGAGAAAAAGCAA 57.180 28.000 0.00 0.00 0.00 3.91
446 479 8.245701 ACAAATACAAAACGAGAAAAAGCAAA 57.754 26.923 0.00 0.00 0.00 3.68
447 480 8.379902 ACAAATACAAAACGAGAAAAAGCAAAG 58.620 29.630 0.00 0.00 0.00 2.77
448 481 8.591312 CAAATACAAAACGAGAAAAAGCAAAGA 58.409 29.630 0.00 0.00 0.00 2.52
449 482 8.696410 AATACAAAACGAGAAAAAGCAAAGAA 57.304 26.923 0.00 0.00 0.00 2.52
450 483 6.389622 ACAAAACGAGAAAAAGCAAAGAAC 57.610 33.333 0.00 0.00 0.00 3.01
451 484 5.060446 ACAAAACGAGAAAAAGCAAAGAACG 59.940 36.000 0.00 0.00 0.00 3.95
452 485 3.334272 ACGAGAAAAAGCAAAGAACGG 57.666 42.857 0.00 0.00 0.00 4.44
453 486 2.044135 CGAGAAAAAGCAAAGAACGGC 58.956 47.619 0.00 0.00 0.00 5.68
487 520 2.555199 CGAGGAAAAGAAGCCATCGAT 58.445 47.619 0.00 0.00 31.20 3.59
893 945 2.336478 CGCGTCCTGACTCCTGACT 61.336 63.158 0.00 0.00 0.00 3.41
899 951 0.246086 CCTGACTCCTGACTGACTGC 59.754 60.000 0.00 0.00 0.00 4.40
1077 1136 0.609131 CGGCTGTGGGGTTCTGATTT 60.609 55.000 0.00 0.00 0.00 2.17
1297 1356 1.076677 TCTACGAGAAGAGGTGGGGTT 59.923 52.381 0.00 0.00 0.00 4.11
1298 1357 1.477295 CTACGAGAAGAGGTGGGGTTC 59.523 57.143 0.00 0.00 0.00 3.62
1299 1358 0.178929 ACGAGAAGAGGTGGGGTTCT 60.179 55.000 0.00 0.00 33.14 3.01
1391 1450 3.882288 TGTGTCGTTACTGGTGTAGTGTA 59.118 43.478 0.00 0.00 40.65 2.90
1448 1515 1.556911 CTGGTCCTAGTTGGCTGACAT 59.443 52.381 0.00 0.00 35.26 3.06
1469 1536 7.928167 TGACATATGTTGATTCTGTGGATAGAC 59.072 37.037 10.30 0.00 0.00 2.59
1478 1545 6.718912 TGATTCTGTGGATAGACTAGGATGAG 59.281 42.308 0.00 0.00 0.00 2.90
1479 1546 4.402829 TCTGTGGATAGACTAGGATGAGC 58.597 47.826 0.00 0.00 0.00 4.26
1480 1547 3.149981 TGTGGATAGACTAGGATGAGCG 58.850 50.000 0.00 0.00 0.00 5.03
1486 1553 5.106475 GGATAGACTAGGATGAGCGTGTTAG 60.106 48.000 0.00 0.00 0.00 2.34
1509 1576 7.520451 AGCATGACATTTGATATACAATGCT 57.480 32.000 0.00 0.00 40.31 3.79
1515 1582 9.341078 TGACATTTGATATACAATGCTGTACAT 57.659 29.630 0.00 0.00 40.84 2.29
1547 1614 5.970640 TGTTGGATTAGACCCTCTCCTTTAT 59.029 40.000 0.00 0.00 0.00 1.40
1560 1627 5.416013 CCTCTCCTTTATCTGTTGGGTTTTC 59.584 44.000 0.00 0.00 0.00 2.29
1665 1763 8.632679 CATGTTATTATTACTTGCTGGGTCATT 58.367 33.333 0.00 0.00 0.00 2.57
1668 1766 8.682710 GTTATTATTACTTGCTGGGTCATTGAA 58.317 33.333 0.00 0.00 0.00 2.69
1720 1818 7.963532 AGTTATGTCAAGTTCTACTCAGGAAA 58.036 34.615 0.00 0.00 0.00 3.13
1742 1840 4.937201 CCTGTCATAGGTAGCACATGTA 57.063 45.455 0.00 0.00 42.00 2.29
1760 1858 9.624697 GCACATGTATGAAATTTGACTTCTAAA 57.375 29.630 0.00 0.00 0.00 1.85
1824 1922 9.829507 AATTTGACTTCATGTTTTGGTTAATCA 57.170 25.926 0.00 0.00 0.00 2.57
1858 1956 3.851620 GCATCGGCACCATAATGTG 57.148 52.632 0.00 0.00 40.72 3.21
1863 1961 4.737352 GCATCGGCACCATAATGTGAAATT 60.737 41.667 0.00 0.00 38.55 1.82
1898 1996 9.539825 TTCGTGTTGGTTTTATTTAGTGTACTA 57.460 29.630 0.00 0.00 0.00 1.82
1929 2027 5.749032 GCATTACTTATATTGGAGCAGGGGT 60.749 44.000 0.00 0.00 0.00 4.95
2033 2135 9.303537 GTTAGTACATTCTACTGACCAATCTTC 57.696 37.037 0.00 0.00 30.64 2.87
2038 2140 8.723942 ACATTCTACTGACCAATCTTCATTAC 57.276 34.615 0.00 0.00 0.00 1.89
2174 2291 6.195600 TCACTAACCCTGTCCTTTTACATT 57.804 37.500 0.00 0.00 0.00 2.71
2236 2353 9.174166 GAATCCACTGTTTAATACTGTTACCAT 57.826 33.333 0.00 0.00 36.87 3.55
2555 2673 7.840931 TGCTTCAAAGATGATCTCTGTAAGTA 58.159 34.615 0.00 0.00 34.96 2.24
2611 2731 9.462174 TTTCATTTACATTTTCAGTGATGTGAC 57.538 29.630 7.91 0.00 37.12 3.67
2612 2732 7.592938 TCATTTACATTTTCAGTGATGTGACC 58.407 34.615 7.91 0.00 37.12 4.02
2613 2733 7.448161 TCATTTACATTTTCAGTGATGTGACCT 59.552 33.333 7.91 0.00 37.12 3.85
2614 2734 8.729756 CATTTACATTTTCAGTGATGTGACCTA 58.270 33.333 7.91 0.00 37.12 3.08
2615 2735 8.862325 TTTACATTTTCAGTGATGTGACCTAT 57.138 30.769 7.91 0.00 37.12 2.57
2616 2736 6.748333 ACATTTTCAGTGATGTGACCTATG 57.252 37.500 0.00 0.00 35.31 2.23
2617 2737 6.240894 ACATTTTCAGTGATGTGACCTATGT 58.759 36.000 0.00 0.00 35.31 2.29
2618 2738 6.716628 ACATTTTCAGTGATGTGACCTATGTT 59.283 34.615 0.00 0.00 35.31 2.71
2619 2739 7.231317 ACATTTTCAGTGATGTGACCTATGTTT 59.769 33.333 0.00 0.00 35.31 2.83
2620 2740 7.581213 TTTTCAGTGATGTGACCTATGTTTT 57.419 32.000 0.00 0.00 0.00 2.43
2621 2741 7.581213 TTTCAGTGATGTGACCTATGTTTTT 57.419 32.000 0.00 0.00 0.00 1.94
2680 2800 2.684843 GGCTCTTGACTGCTTGGCG 61.685 63.158 0.00 0.00 0.00 5.69
3027 3147 9.979897 TTCCCCTCTAAATTATATCATCCATTG 57.020 33.333 0.00 0.00 0.00 2.82
3563 3684 3.820557 TCTTTCTTTCAGTGGTTCCTGG 58.179 45.455 0.00 0.00 33.14 4.45
3625 3748 7.430992 TGATCATCAGTTGAACTTCTTCAAG 57.569 36.000 0.00 0.00 45.22 3.02
3734 3857 4.722194 TGTCGCAAATGCTAGATTTGTTC 58.278 39.130 19.69 13.98 40.19 3.18
3851 3974 5.876460 ACATTGAAGGCCTTAATTTGCAATC 59.124 36.000 20.54 1.86 0.00 2.67
3877 4000 5.415701 TGGTTGCTTTGGAGAGCTTTAATAG 59.584 40.000 0.00 0.00 43.11 1.73
3904 4027 9.927081 AGATAATTGATTTGGTCTATGGTCTTT 57.073 29.630 0.00 0.00 0.00 2.52
3905 4028 9.956720 GATAATTGATTTGGTCTATGGTCTTTG 57.043 33.333 0.00 0.00 0.00 2.77
3906 4029 6.780457 ATTGATTTGGTCTATGGTCTTTGG 57.220 37.500 0.00 0.00 0.00 3.28
3907 4030 5.512942 TGATTTGGTCTATGGTCTTTGGA 57.487 39.130 0.00 0.00 0.00 3.53
3908 4031 5.500234 TGATTTGGTCTATGGTCTTTGGAG 58.500 41.667 0.00 0.00 0.00 3.86
3909 4032 5.250543 TGATTTGGTCTATGGTCTTTGGAGA 59.749 40.000 0.00 0.00 0.00 3.71
3922 4045 6.879400 GGTCTTTGGAGAGCTTTAATAGAGA 58.121 40.000 0.00 0.00 44.93 3.10
3923 4046 7.505258 GGTCTTTGGAGAGCTTTAATAGAGAT 58.495 38.462 0.00 0.00 44.93 2.75
3991 4244 9.126151 CCTAGTTAAGAGTATGAATGAGACAGA 57.874 37.037 0.00 0.00 0.00 3.41
4079 4332 6.573434 TCATCGTTATGATTCAAGCTGTACT 58.427 36.000 0.00 0.00 37.20 2.73
4156 4410 0.617413 CATCTGCTTCCCTGTGGTCT 59.383 55.000 0.00 0.00 0.00 3.85
4193 4447 4.229582 TGGGAGAAATTACCTAGCACCAAT 59.770 41.667 0.00 0.00 0.00 3.16
4207 4461 3.080300 CACCAATGCTAAGGGGTGTTA 57.920 47.619 0.00 0.00 44.47 2.41
4405 4948 1.447938 GCGTTTTTCGAGCATGTGTTG 59.552 47.619 0.00 0.00 42.86 3.33
4525 5078 7.929941 AGATTCCTGAACTTGAGAAATTACC 57.070 36.000 0.00 0.00 0.00 2.85
4633 5186 9.811995 GGTGAATAACTTGTTTCCTTTACTTTT 57.188 29.630 0.00 0.00 0.00 2.27
4644 5206 7.018851 TGTTTCCTTTACTTTTATACCCCCTCT 59.981 37.037 0.00 0.00 0.00 3.69
4645 5207 6.570654 TCCTTTACTTTTATACCCCCTCTG 57.429 41.667 0.00 0.00 0.00 3.35
4646 5208 5.104235 TCCTTTACTTTTATACCCCCTCTGC 60.104 44.000 0.00 0.00 0.00 4.26
4651 5213 0.273781 TTATACCCCCTCTGCCCCAT 59.726 55.000 0.00 0.00 0.00 4.00
4653 5215 0.273781 ATACCCCCTCTGCCCCATAA 59.726 55.000 0.00 0.00 0.00 1.90
4661 5223 4.164988 CCCCTCTGCCCCATAATATAAGAG 59.835 50.000 0.00 0.00 0.00 2.85
4662 5224 4.785376 CCCTCTGCCCCATAATATAAGAGT 59.215 45.833 0.00 0.00 0.00 3.24
4663 5225 5.338708 CCCTCTGCCCCATAATATAAGAGTG 60.339 48.000 0.00 0.00 0.00 3.51
4665 5227 6.240002 CCTCTGCCCCATAATATAAGAGTGTT 60.240 42.308 0.00 0.00 0.00 3.32
4667 5229 7.224297 TCTGCCCCATAATATAAGAGTGTTTC 58.776 38.462 0.00 0.00 0.00 2.78
4669 5231 6.998074 TGCCCCATAATATAAGAGTGTTTCTG 59.002 38.462 0.00 0.00 35.91 3.02
4671 5233 7.173390 GCCCCATAATATAAGAGTGTTTCTGAC 59.827 40.741 0.00 0.00 35.91 3.51
4672 5234 8.210946 CCCCATAATATAAGAGTGTTTCTGACA 58.789 37.037 0.00 0.00 35.91 3.58
4695 5257 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
4696 5258 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
4697 5259 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
4698 5260 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
4699 5261 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
4700 5262 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
4701 5263 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
4702 5264 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
4703 5265 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
4706 5268 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4707 5269 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4708 5270 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4709 5271 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4710 5272 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4711 5273 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4712 5274 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4713 5275 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4714 5276 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4715 5277 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4716 5278 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4779 5343 3.321968 GGGGCCATTCCTTGATCATTTAC 59.678 47.826 4.39 0.00 34.39 2.01
4864 5429 6.569179 AACTTATAAACGTTGGCTGTCAAT 57.431 33.333 0.00 0.00 37.73 2.57
4906 5550 9.337396 GTTTGGGACTTGATAATCATGTGTATA 57.663 33.333 0.00 0.00 35.29 1.47
5017 5663 1.429021 CCGGCACCACATCATTTCG 59.571 57.895 0.00 0.00 0.00 3.46
5048 5694 8.623903 GTGCATTGACTAATCTTGGATATTTCA 58.376 33.333 0.00 0.00 0.00 2.69
5105 5752 6.036735 TGTTTGACGAGTAACAAGAAAGGAAG 59.963 38.462 0.00 0.00 31.75 3.46
5263 5913 6.177610 ACTTGAGAAATACTTGGCCGAAATA 58.822 36.000 0.00 0.00 0.00 1.40
5265 5915 6.431198 TGAGAAATACTTGGCCGAAATAAC 57.569 37.500 0.00 0.00 0.00 1.89
5270 5920 7.494952 AGAAATACTTGGCCGAAATAACTACTC 59.505 37.037 0.00 0.00 0.00 2.59
5279 5929 7.065324 TGGCCGAAATAACTACTCTTGTTATTG 59.935 37.037 11.12 3.16 44.73 1.90
5281 5931 7.903431 GCCGAAATAACTACTCTTGTTATTGTG 59.097 37.037 11.12 7.78 44.73 3.33
5308 5958 4.211164 TCTCATGTGCGTTTACTTGTGAAG 59.789 41.667 0.00 0.00 30.41 3.02
5323 5973 9.826574 TTACTTGTGAAGTAAGTTGTTATGACT 57.173 29.630 5.07 0.00 46.13 3.41
5346 5996 2.872038 GCATATACTACAGCCCAGGCAC 60.872 54.545 12.03 0.00 44.88 5.01
5350 6000 1.358152 ACTACAGCCCAGGCACTTAA 58.642 50.000 12.03 0.00 44.88 1.85
5355 6005 3.090765 CCCAGGCACTTAAGGGCT 58.909 61.111 28.01 19.34 42.53 5.19
5374 6024 5.228945 GGCTTGGCCTAGTTATCTTATCA 57.771 43.478 15.85 0.00 46.69 2.15
5404 6054 4.796038 GGCTTAGCCCAGTTATCGTATA 57.204 45.455 13.12 0.00 44.06 1.47
5406 6056 6.461110 GGCTTAGCCCAGTTATCGTATATA 57.539 41.667 13.12 0.00 44.06 0.86
5409 6059 7.147949 GGCTTAGCCCAGTTATCGTATATAGAA 60.148 40.741 13.12 0.00 44.06 2.10
5444 6094 5.607477 TCATGTAAGGACTCGTTTGAAGTT 58.393 37.500 0.00 0.00 0.00 2.66
5452 6102 4.150804 GGACTCGTTTGAAGTTAAGCAGAG 59.849 45.833 0.00 0.00 0.00 3.35
5457 6107 4.497340 CGTTTGAAGTTAAGCAGAGGCAAA 60.497 41.667 0.00 0.00 44.61 3.68
5488 6138 3.713650 CTTCCTGAAGGGAGCCGA 58.286 61.111 0.00 0.00 46.01 5.54
5493 6143 0.758685 CCTGAAGGGAGCCGAGAGAT 60.759 60.000 0.00 0.00 37.23 2.75
5500 6150 0.594110 GGAGCCGAGAGATCTAACCG 59.406 60.000 0.00 0.00 0.00 4.44
5509 6159 0.754217 AGATCTAACCGTAGCCGCCA 60.754 55.000 0.00 0.00 0.00 5.69
5516 6166 2.831742 CGTAGCCGCCACCTCCTA 60.832 66.667 0.00 0.00 0.00 2.94
5517 6167 2.201022 CGTAGCCGCCACCTCCTAT 61.201 63.158 0.00 0.00 0.00 2.57
5532 6182 2.108075 CTCCTATGCCCTCTCTCTCTCA 59.892 54.545 0.00 0.00 0.00 3.27
5533 6183 2.721355 TCCTATGCCCTCTCTCTCTCAT 59.279 50.000 0.00 0.00 0.00 2.90
5541 6193 0.393132 TCTCTCTCTCATGACGGCGT 60.393 55.000 14.65 14.65 0.00 5.68
5543 6195 0.393132 TCTCTCTCATGACGGCGTCT 60.393 55.000 36.17 21.27 33.15 4.18
5548 6200 3.250323 CATGACGGCGTCTCAGCG 61.250 66.667 36.17 18.23 38.18 5.18
5559 6211 4.749310 CTCAGCGCTGGCGACCTT 62.749 66.667 35.36 0.00 46.35 3.50
5603 6255 0.615544 TCCACCCCTACAACCTACGG 60.616 60.000 0.00 0.00 0.00 4.02
5604 6256 1.619807 CCACCCCTACAACCTACGGG 61.620 65.000 0.00 0.00 39.85 5.28
5612 6264 0.040794 ACAACCTACGGGCTAGACCT 59.959 55.000 14.26 2.13 39.10 3.85
5613 6265 1.285962 ACAACCTACGGGCTAGACCTA 59.714 52.381 14.26 3.32 39.10 3.08
5623 6275 2.177451 GGGCTAGACCTAGTAGGAACCT 59.823 54.545 23.50 16.87 37.67 3.50
5628 6280 4.884887 AGACCTAGTAGGAACCTAGCTT 57.115 45.455 23.50 0.00 37.67 3.74
5635 6287 4.944177 AGTAGGAACCTAGCTTCTACCAA 58.056 43.478 0.00 0.00 0.00 3.67
5653 6305 4.494091 CCAATCTGGTATCAGGTGTCTT 57.506 45.455 2.43 0.00 41.23 3.01
5656 6308 5.363868 CCAATCTGGTATCAGGTGTCTTAGA 59.636 44.000 2.43 0.00 41.23 2.10
5667 6319 4.336713 CAGGTGTCTTAGACTCGATCATGA 59.663 45.833 13.86 0.00 33.15 3.07
5670 6322 4.096532 GTGTCTTAGACTCGATCATGACCA 59.903 45.833 13.86 0.00 33.15 4.02
5672 6324 3.632604 TCTTAGACTCGATCATGACCACC 59.367 47.826 0.00 0.00 0.00 4.61
5673 6325 0.741326 AGACTCGATCATGACCACCG 59.259 55.000 0.00 0.00 0.00 4.94
5675 6327 1.946156 CTCGATCATGACCACCGCG 60.946 63.158 0.00 0.00 0.00 6.46
5676 6328 2.961721 CGATCATGACCACCGCGG 60.962 66.667 26.86 26.86 42.50 6.46
5677 6329 3.272334 GATCATGACCACCGCGGC 61.272 66.667 28.58 9.70 39.03 6.53
5678 6330 4.856801 ATCATGACCACCGCGGCC 62.857 66.667 28.58 12.87 39.03 6.13
5694 6346 4.007644 CCAGCACGCTGTCCCTGA 62.008 66.667 17.31 0.00 42.15 3.86
5695 6347 2.267006 CAGCACGCTGTCCCTGAT 59.733 61.111 10.94 0.00 39.10 2.90
5696 6348 1.812922 CAGCACGCTGTCCCTGATC 60.813 63.158 10.94 0.00 39.10 2.92
5697 6349 2.887568 GCACGCTGTCCCTGATCG 60.888 66.667 0.00 0.00 0.00 3.69
5698 6350 2.202797 CACGCTGTCCCTGATCGG 60.203 66.667 0.00 0.00 0.00 4.18
5711 6363 2.123812 ATCGGGTCGGTCTCCTCC 60.124 66.667 0.00 0.00 0.00 4.30
5719 6371 4.821589 GGTCTCCTCCGCCGCTTG 62.822 72.222 0.00 0.00 0.00 4.01
5722 6374 4.821589 CTCCTCCGCCGCTTGGAC 62.822 72.222 0.00 0.00 33.02 4.02
5755 6408 2.187946 CTCCATCGTGCTCACCCC 59.812 66.667 0.00 0.00 0.00 4.95
5773 6426 2.887790 CGGAGGAGATGACAGTGGA 58.112 57.895 0.00 0.00 0.00 4.02
5777 6430 1.830477 GAGGAGATGACAGTGGAGCTT 59.170 52.381 0.00 0.00 0.00 3.74
5801 6454 3.056628 CCTGACTCAGGCGTTCATC 57.943 57.895 12.34 0.00 45.13 2.92
5802 6455 0.803768 CCTGACTCAGGCGTTCATCG 60.804 60.000 12.34 0.00 45.13 3.84
5803 6456 0.171231 CTGACTCAGGCGTTCATCGA 59.829 55.000 0.00 0.00 42.86 3.59
5804 6457 0.817654 TGACTCAGGCGTTCATCGAT 59.182 50.000 0.00 0.00 42.86 3.59
5805 6458 1.202302 TGACTCAGGCGTTCATCGATC 60.202 52.381 0.00 0.00 42.86 3.69
5806 6459 1.066303 GACTCAGGCGTTCATCGATCT 59.934 52.381 0.00 0.00 42.86 2.75
5807 6460 2.290916 GACTCAGGCGTTCATCGATCTA 59.709 50.000 0.00 0.00 42.86 1.98
5808 6461 2.292016 ACTCAGGCGTTCATCGATCTAG 59.708 50.000 0.00 0.00 42.86 2.43
5809 6462 1.001268 TCAGGCGTTCATCGATCTAGC 60.001 52.381 0.00 0.00 42.86 3.42
5810 6463 0.039978 AGGCGTTCATCGATCTAGCG 60.040 55.000 0.00 1.84 42.86 4.26
5811 6464 1.609840 GGCGTTCATCGATCTAGCGC 61.610 60.000 22.43 22.43 42.86 5.92
5812 6465 0.934901 GCGTTCATCGATCTAGCGCA 60.935 55.000 24.34 0.00 42.44 6.09
5813 6466 1.691127 CGTTCATCGATCTAGCGCAT 58.309 50.000 11.47 0.00 42.86 4.73
5814 6467 1.384742 CGTTCATCGATCTAGCGCATG 59.615 52.381 11.47 2.20 42.86 4.06
5815 6468 2.398498 GTTCATCGATCTAGCGCATGT 58.602 47.619 11.47 0.00 0.00 3.21
5816 6469 2.056094 TCATCGATCTAGCGCATGTG 57.944 50.000 11.47 0.66 0.00 3.21
5817 6470 1.338020 TCATCGATCTAGCGCATGTGT 59.662 47.619 11.47 0.00 0.00 3.72
5818 6471 1.454653 CATCGATCTAGCGCATGTGTG 59.545 52.381 11.47 0.00 0.00 3.82
5819 6472 0.738389 TCGATCTAGCGCATGTGTGA 59.262 50.000 11.47 4.83 0.00 3.58
5820 6473 1.338020 TCGATCTAGCGCATGTGTGAT 59.662 47.619 11.47 9.28 0.00 3.06
5821 6474 1.718178 CGATCTAGCGCATGTGTGATC 59.282 52.381 11.47 19.46 0.00 2.92
5822 6475 2.606551 CGATCTAGCGCATGTGTGATCT 60.607 50.000 23.14 11.26 0.00 2.75
5823 6476 2.967599 TCTAGCGCATGTGTGATCTT 57.032 45.000 11.47 0.00 0.00 2.40
5824 6477 3.251479 TCTAGCGCATGTGTGATCTTT 57.749 42.857 11.47 0.00 0.00 2.52
5825 6478 3.599343 TCTAGCGCATGTGTGATCTTTT 58.401 40.909 11.47 0.00 0.00 2.27
5826 6479 2.907910 AGCGCATGTGTGATCTTTTC 57.092 45.000 11.47 0.00 0.00 2.29
5827 6480 2.430465 AGCGCATGTGTGATCTTTTCT 58.570 42.857 11.47 0.00 0.00 2.52
5828 6481 2.816087 AGCGCATGTGTGATCTTTTCTT 59.184 40.909 11.47 0.00 0.00 2.52
5829 6482 2.912967 GCGCATGTGTGATCTTTTCTTG 59.087 45.455 0.30 0.00 0.00 3.02
5830 6483 3.610114 GCGCATGTGTGATCTTTTCTTGT 60.610 43.478 0.30 0.00 0.00 3.16
5831 6484 4.539870 CGCATGTGTGATCTTTTCTTGTT 58.460 39.130 0.00 0.00 0.00 2.83
5832 6485 4.380678 CGCATGTGTGATCTTTTCTTGTTG 59.619 41.667 0.00 0.00 0.00 3.33
5833 6486 4.682860 GCATGTGTGATCTTTTCTTGTTGG 59.317 41.667 0.00 0.00 0.00 3.77
5834 6487 5.737063 GCATGTGTGATCTTTTCTTGTTGGT 60.737 40.000 0.00 0.00 0.00 3.67
5835 6488 5.913137 TGTGTGATCTTTTCTTGTTGGTT 57.087 34.783 0.00 0.00 0.00 3.67
5836 6489 5.649557 TGTGTGATCTTTTCTTGTTGGTTG 58.350 37.500 0.00 0.00 0.00 3.77
5837 6490 5.417266 TGTGTGATCTTTTCTTGTTGGTTGA 59.583 36.000 0.00 0.00 0.00 3.18
5838 6491 5.973565 GTGTGATCTTTTCTTGTTGGTTGAG 59.026 40.000 0.00 0.00 0.00 3.02
5839 6492 5.652014 TGTGATCTTTTCTTGTTGGTTGAGT 59.348 36.000 0.00 0.00 0.00 3.41
5840 6493 5.973565 GTGATCTTTTCTTGTTGGTTGAGTG 59.026 40.000 0.00 0.00 0.00 3.51
5841 6494 5.885352 TGATCTTTTCTTGTTGGTTGAGTGA 59.115 36.000 0.00 0.00 0.00 3.41
5842 6495 6.547141 TGATCTTTTCTTGTTGGTTGAGTGAT 59.453 34.615 0.00 0.00 0.00 3.06
5843 6496 6.773976 TCTTTTCTTGTTGGTTGAGTGATT 57.226 33.333 0.00 0.00 0.00 2.57
5844 6497 6.795399 TCTTTTCTTGTTGGTTGAGTGATTC 58.205 36.000 0.00 0.00 0.00 2.52
5845 6498 6.603201 TCTTTTCTTGTTGGTTGAGTGATTCT 59.397 34.615 0.00 0.00 0.00 2.40
5846 6499 6.377327 TTTCTTGTTGGTTGAGTGATTCTC 57.623 37.500 0.00 0.00 43.03 2.87
5847 6500 5.296151 TCTTGTTGGTTGAGTGATTCTCT 57.704 39.130 0.00 0.00 43.13 3.10
5848 6501 5.300752 TCTTGTTGGTTGAGTGATTCTCTC 58.699 41.667 8.48 8.48 43.13 3.20
5849 6502 3.653344 TGTTGGTTGAGTGATTCTCTCG 58.347 45.455 10.30 0.00 43.13 4.04
5850 6503 3.069586 TGTTGGTTGAGTGATTCTCTCGT 59.930 43.478 10.30 0.00 43.13 4.18
5851 6504 3.303881 TGGTTGAGTGATTCTCTCGTG 57.696 47.619 10.30 0.00 43.13 4.35
5852 6505 2.628178 TGGTTGAGTGATTCTCTCGTGT 59.372 45.455 10.30 0.00 43.13 4.49
5853 6506 3.069586 TGGTTGAGTGATTCTCTCGTGTT 59.930 43.478 10.30 0.00 43.13 3.32
5854 6507 4.058817 GGTTGAGTGATTCTCTCGTGTTT 58.941 43.478 10.30 0.00 43.13 2.83
5855 6508 4.150804 GGTTGAGTGATTCTCTCGTGTTTC 59.849 45.833 10.30 0.00 43.13 2.78
5856 6509 3.914312 TGAGTGATTCTCTCGTGTTTCC 58.086 45.455 10.30 0.00 43.13 3.13
5857 6510 3.574396 TGAGTGATTCTCTCGTGTTTCCT 59.426 43.478 10.30 0.00 43.13 3.36
5858 6511 4.170256 GAGTGATTCTCTCGTGTTTCCTC 58.830 47.826 0.32 0.00 39.86 3.71
5859 6512 3.829601 AGTGATTCTCTCGTGTTTCCTCT 59.170 43.478 0.00 0.00 0.00 3.69
5860 6513 4.282195 AGTGATTCTCTCGTGTTTCCTCTT 59.718 41.667 0.00 0.00 0.00 2.85
5861 6514 4.387256 GTGATTCTCTCGTGTTTCCTCTTG 59.613 45.833 0.00 0.00 0.00 3.02
5862 6515 4.039245 TGATTCTCTCGTGTTTCCTCTTGT 59.961 41.667 0.00 0.00 0.00 3.16
5863 6516 3.371102 TCTCTCGTGTTTCCTCTTGTG 57.629 47.619 0.00 0.00 0.00 3.33
5864 6517 2.693591 TCTCTCGTGTTTCCTCTTGTGT 59.306 45.455 0.00 0.00 0.00 3.72
5865 6518 3.132289 TCTCTCGTGTTTCCTCTTGTGTT 59.868 43.478 0.00 0.00 0.00 3.32
5866 6519 3.869065 TCTCGTGTTTCCTCTTGTGTTT 58.131 40.909 0.00 0.00 0.00 2.83
5867 6520 4.258543 TCTCGTGTTTCCTCTTGTGTTTT 58.741 39.130 0.00 0.00 0.00 2.43
5868 6521 4.331717 TCTCGTGTTTCCTCTTGTGTTTTC 59.668 41.667 0.00 0.00 0.00 2.29
5869 6522 3.375922 TCGTGTTTCCTCTTGTGTTTTCC 59.624 43.478 0.00 0.00 0.00 3.13
5870 6523 3.488553 CGTGTTTCCTCTTGTGTTTTCCC 60.489 47.826 0.00 0.00 0.00 3.97
5871 6524 3.699538 GTGTTTCCTCTTGTGTTTTCCCT 59.300 43.478 0.00 0.00 0.00 4.20
5872 6525 3.951680 TGTTTCCTCTTGTGTTTTCCCTC 59.048 43.478 0.00 0.00 0.00 4.30
5873 6526 2.543777 TCCTCTTGTGTTTTCCCTCG 57.456 50.000 0.00 0.00 0.00 4.63
5874 6527 1.766496 TCCTCTTGTGTTTTCCCTCGT 59.234 47.619 0.00 0.00 0.00 4.18
5875 6528 2.171870 TCCTCTTGTGTTTTCCCTCGTT 59.828 45.455 0.00 0.00 0.00 3.85
5876 6529 2.949644 CCTCTTGTGTTTTCCCTCGTTT 59.050 45.455 0.00 0.00 0.00 3.60
5877 6530 4.131596 CCTCTTGTGTTTTCCCTCGTTTA 58.868 43.478 0.00 0.00 0.00 2.01
5878 6531 4.024302 CCTCTTGTGTTTTCCCTCGTTTAC 60.024 45.833 0.00 0.00 0.00 2.01
5879 6532 3.878699 TCTTGTGTTTTCCCTCGTTTACC 59.121 43.478 0.00 0.00 0.00 2.85
5880 6533 2.574450 TGTGTTTTCCCTCGTTTACCC 58.426 47.619 0.00 0.00 0.00 3.69
5881 6534 1.881973 GTGTTTTCCCTCGTTTACCCC 59.118 52.381 0.00 0.00 0.00 4.95
5882 6535 1.776063 TGTTTTCCCTCGTTTACCCCT 59.224 47.619 0.00 0.00 0.00 4.79
5883 6536 2.224597 TGTTTTCCCTCGTTTACCCCTC 60.225 50.000 0.00 0.00 0.00 4.30
5884 6537 0.609662 TTTCCCTCGTTTACCCCTCG 59.390 55.000 0.00 0.00 0.00 4.63
5885 6538 0.542702 TTCCCTCGTTTACCCCTCGT 60.543 55.000 0.00 0.00 0.00 4.18
5886 6539 1.217244 CCCTCGTTTACCCCTCGTG 59.783 63.158 0.00 0.00 0.00 4.35
5887 6540 1.538687 CCCTCGTTTACCCCTCGTGT 61.539 60.000 0.00 0.00 0.00 4.49
5888 6541 0.319405 CCTCGTTTACCCCTCGTGTT 59.681 55.000 0.00 0.00 0.00 3.32
5889 6542 1.670967 CCTCGTTTACCCCTCGTGTTC 60.671 57.143 0.00 0.00 0.00 3.18
5890 6543 1.271656 CTCGTTTACCCCTCGTGTTCT 59.728 52.381 0.00 0.00 0.00 3.01
5891 6544 1.688197 TCGTTTACCCCTCGTGTTCTT 59.312 47.619 0.00 0.00 0.00 2.52
5892 6545 2.064014 CGTTTACCCCTCGTGTTCTTC 58.936 52.381 0.00 0.00 0.00 2.87
5893 6546 2.064014 GTTTACCCCTCGTGTTCTTCG 58.936 52.381 0.00 0.00 0.00 3.79
5894 6547 1.331214 TTACCCCTCGTGTTCTTCGT 58.669 50.000 0.00 0.00 0.00 3.85
5895 6548 0.599558 TACCCCTCGTGTTCTTCGTG 59.400 55.000 0.00 0.00 0.00 4.35
5896 6549 1.366366 CCCCTCGTGTTCTTCGTGT 59.634 57.895 0.00 0.00 0.00 4.49
5897 6550 0.249741 CCCCTCGTGTTCTTCGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
5898 6551 1.137513 CCCTCGTGTTCTTCGTGTTC 58.862 55.000 0.00 0.00 0.00 3.18
5899 6552 1.137513 CCTCGTGTTCTTCGTGTTCC 58.862 55.000 0.00 0.00 0.00 3.62
5900 6553 0.776451 CTCGTGTTCTTCGTGTTCCG 59.224 55.000 0.00 0.00 38.13 4.30
5901 6554 0.101040 TCGTGTTCTTCGTGTTCCGT 59.899 50.000 0.00 0.00 37.94 4.69
5902 6555 1.333308 TCGTGTTCTTCGTGTTCCGTA 59.667 47.619 0.00 0.00 37.94 4.02
5903 6556 2.030893 TCGTGTTCTTCGTGTTCCGTAT 60.031 45.455 0.00 0.00 37.94 3.06
5904 6557 3.188254 TCGTGTTCTTCGTGTTCCGTATA 59.812 43.478 0.00 0.00 37.94 1.47
5905 6558 3.541130 CGTGTTCTTCGTGTTCCGTATAG 59.459 47.826 0.00 0.00 37.94 1.31
5906 6559 3.855950 GTGTTCTTCGTGTTCCGTATAGG 59.144 47.826 0.00 0.00 42.97 2.57
5907 6560 3.119388 TGTTCTTCGTGTTCCGTATAGGG 60.119 47.826 5.03 5.03 41.52 3.53
5908 6561 2.726821 TCTTCGTGTTCCGTATAGGGT 58.273 47.619 11.15 0.00 41.52 4.34
5909 6562 3.091545 TCTTCGTGTTCCGTATAGGGTT 58.908 45.455 11.15 0.00 41.52 4.11
5910 6563 3.129287 TCTTCGTGTTCCGTATAGGGTTC 59.871 47.826 11.15 6.55 41.52 3.62
5911 6564 1.750778 TCGTGTTCCGTATAGGGTTCC 59.249 52.381 11.15 1.97 41.52 3.62
5912 6565 1.477700 CGTGTTCCGTATAGGGTTCCA 59.522 52.381 11.15 4.32 41.52 3.53
5913 6566 2.736400 CGTGTTCCGTATAGGGTTCCAC 60.736 54.545 11.15 13.51 41.52 4.02
5914 6567 1.832998 TGTTCCGTATAGGGTTCCACC 59.167 52.381 11.15 0.00 41.52 4.61
5924 6577 3.453559 GGTTCCACCCTACATCACG 57.546 57.895 0.00 0.00 30.04 4.35
5925 6578 0.611714 GGTTCCACCCTACATCACGT 59.388 55.000 0.00 0.00 30.04 4.49
5926 6579 1.002773 GGTTCCACCCTACATCACGTT 59.997 52.381 0.00 0.00 30.04 3.99
5927 6580 2.344025 GTTCCACCCTACATCACGTTC 58.656 52.381 0.00 0.00 0.00 3.95
5937 6590 1.097547 CATCACGTTCCAGGGCATCC 61.098 60.000 0.00 0.00 0.00 3.51
5997 6650 1.584495 CTCGTCACCACCATCACGA 59.416 57.895 0.00 0.00 38.89 4.35
6065 6718 1.076850 ATCCATCATGCCGTTGCCA 60.077 52.632 0.00 0.00 36.33 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.416952 GGCATCTTTTCCTTCTGATGAGAAA 59.583 40.000 0.00 0.00 37.77 2.52
10 11 2.159142 CCTGCATGGCATCTTTTCCTTC 60.159 50.000 0.00 0.00 38.13 3.46
32 34 2.735478 CCGCCGAACTTGCACGTA 60.735 61.111 0.00 0.00 0.00 3.57
61 64 1.866853 CTCTTTGGCCGCCAACCTTC 61.867 60.000 24.78 0.00 43.82 3.46
65 68 2.639327 ATGCTCTTTGGCCGCCAAC 61.639 57.895 24.78 13.43 43.82 3.77
69 72 4.503314 GGCATGCTCTTTGGCCGC 62.503 66.667 18.92 0.00 36.58 6.53
78 81 2.590007 CACCGGCTAGGCATGCTC 60.590 66.667 18.92 7.89 46.52 4.26
80 83 2.590007 CTCACCGGCTAGGCATGC 60.590 66.667 17.45 9.90 46.52 4.06
92 95 2.113860 TCTGTGCTTAATGCCTCACC 57.886 50.000 0.00 0.00 42.00 4.02
98 101 2.294512 GCCCCTTATCTGTGCTTAATGC 59.705 50.000 0.00 0.00 43.25 3.56
104 115 1.221840 CACGCCCCTTATCTGTGCT 59.778 57.895 0.00 0.00 0.00 4.40
105 116 0.179045 ATCACGCCCCTTATCTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
106 117 2.213499 GAATCACGCCCCTTATCTGTG 58.787 52.381 0.00 0.00 0.00 3.66
110 121 1.597663 CGTTGAATCACGCCCCTTATC 59.402 52.381 0.00 0.00 32.43 1.75
112 123 3.146783 CGTTGAATCACGCCCCTTA 57.853 52.632 0.00 0.00 32.43 2.69
139 150 9.213799 TGTTTGAACTGATAAAAATAAATGCCC 57.786 29.630 0.00 0.00 0.00 5.36
142 153 9.726034 GCGTGTTTGAACTGATAAAAATAAATG 57.274 29.630 0.00 0.00 0.00 2.32
143 154 9.691362 AGCGTGTTTGAACTGATAAAAATAAAT 57.309 25.926 0.00 0.00 0.00 1.40
144 155 9.176181 GAGCGTGTTTGAACTGATAAAAATAAA 57.824 29.630 0.00 0.00 0.00 1.40
145 156 8.564574 AGAGCGTGTTTGAACTGATAAAAATAA 58.435 29.630 0.00 0.00 0.00 1.40
147 158 6.970484 AGAGCGTGTTTGAACTGATAAAAAT 58.030 32.000 0.00 0.00 0.00 1.82
149 160 5.049680 GGAGAGCGTGTTTGAACTGATAAAA 60.050 40.000 0.00 0.00 0.00 1.52
153 164 2.417719 GGAGAGCGTGTTTGAACTGAT 58.582 47.619 0.00 0.00 0.00 2.90
154 165 1.540363 GGGAGAGCGTGTTTGAACTGA 60.540 52.381 0.00 0.00 0.00 3.41
155 166 0.868406 GGGAGAGCGTGTTTGAACTG 59.132 55.000 0.00 0.00 0.00 3.16
156 167 0.468226 TGGGAGAGCGTGTTTGAACT 59.532 50.000 0.00 0.00 0.00 3.01
157 168 0.586802 GTGGGAGAGCGTGTTTGAAC 59.413 55.000 0.00 0.00 0.00 3.18
158 169 0.468226 AGTGGGAGAGCGTGTTTGAA 59.532 50.000 0.00 0.00 0.00 2.69
159 170 0.468226 AAGTGGGAGAGCGTGTTTGA 59.532 50.000 0.00 0.00 0.00 2.69
160 171 0.588252 CAAGTGGGAGAGCGTGTTTG 59.412 55.000 0.00 0.00 0.00 2.93
203 214 2.073117 TCGCATTTCAAGTCACGCTA 57.927 45.000 0.00 0.00 0.00 4.26
206 217 4.783036 CACTAATTCGCATTTCAAGTCACG 59.217 41.667 0.00 0.00 0.00 4.35
210 221 5.940192 TGACACTAATTCGCATTTCAAGT 57.060 34.783 0.00 0.00 0.00 3.16
212 223 6.204688 AGACTTGACACTAATTCGCATTTCAA 59.795 34.615 0.00 0.00 0.00 2.69
215 226 6.017109 ACAAGACTTGACACTAATTCGCATTT 60.017 34.615 21.95 0.00 0.00 2.32
216 227 5.470098 ACAAGACTTGACACTAATTCGCATT 59.530 36.000 21.95 0.00 0.00 3.56
217 228 4.997395 ACAAGACTTGACACTAATTCGCAT 59.003 37.500 21.95 0.00 0.00 4.73
225 236 4.579454 AGCGTTACAAGACTTGACACTA 57.421 40.909 21.95 0.73 0.00 2.74
234 245 2.288729 ACCGGAAAAAGCGTTACAAGAC 59.711 45.455 9.46 0.00 0.00 3.01
235 246 2.545106 GACCGGAAAAAGCGTTACAAGA 59.455 45.455 9.46 0.00 0.00 3.02
236 247 2.288458 TGACCGGAAAAAGCGTTACAAG 59.712 45.455 9.46 0.00 0.00 3.16
239 250 3.242837 ACTTTGACCGGAAAAAGCGTTAC 60.243 43.478 24.21 0.00 36.97 2.50
240 251 2.944349 ACTTTGACCGGAAAAAGCGTTA 59.056 40.909 24.21 0.00 36.97 3.18
259 282 1.686587 GTAAAGCAAAGTTGGGCCACT 59.313 47.619 5.23 3.94 0.00 4.00
260 283 1.410882 TGTAAAGCAAAGTTGGGCCAC 59.589 47.619 5.23 1.08 0.00 5.01
261 284 1.410882 GTGTAAAGCAAAGTTGGGCCA 59.589 47.619 0.00 0.00 0.00 5.36
262 285 1.686587 AGTGTAAAGCAAAGTTGGGCC 59.313 47.619 0.00 0.00 0.00 5.80
263 286 4.783764 ATAGTGTAAAGCAAAGTTGGGC 57.216 40.909 0.00 0.00 0.00 5.36
264 287 5.163652 GGCTATAGTGTAAAGCAAAGTTGGG 60.164 44.000 0.84 0.00 38.01 4.12
265 288 5.648092 AGGCTATAGTGTAAAGCAAAGTTGG 59.352 40.000 0.84 0.00 38.01 3.77
266 289 6.743575 AGGCTATAGTGTAAAGCAAAGTTG 57.256 37.500 0.84 0.00 38.01 3.16
267 290 6.374613 GGAAGGCTATAGTGTAAAGCAAAGTT 59.625 38.462 0.84 0.00 38.01 2.66
268 291 5.880887 GGAAGGCTATAGTGTAAAGCAAAGT 59.119 40.000 0.84 0.00 38.01 2.66
269 292 6.037610 CAGGAAGGCTATAGTGTAAAGCAAAG 59.962 42.308 0.84 0.00 38.01 2.77
278 301 2.092914 GGCAACAGGAAGGCTATAGTGT 60.093 50.000 0.84 0.00 0.00 3.55
281 304 1.490490 TGGGCAACAGGAAGGCTATAG 59.510 52.381 0.00 0.00 39.74 1.31
286 309 1.809567 CTTGTGGGCAACAGGAAGGC 61.810 60.000 0.00 0.00 40.74 4.35
292 315 2.017049 GGTATAGCTTGTGGGCAACAG 58.983 52.381 0.00 0.00 40.74 3.16
323 350 2.101783 GATGTGCATTTCACCCCATGA 58.898 47.619 0.00 0.00 45.03 3.07
328 355 1.895131 ACAAGGATGTGCATTTCACCC 59.105 47.619 0.00 0.00 45.03 4.61
364 397 8.672815 TCGATTCAAACTCATACAAATATGCAA 58.327 29.630 0.00 0.00 38.50 4.08
367 400 8.830580 AGGTCGATTCAAACTCATACAAATATG 58.169 33.333 0.00 0.00 39.79 1.78
369 402 7.494625 GGAGGTCGATTCAAACTCATACAAATA 59.505 37.037 0.00 0.00 0.00 1.40
370 403 6.316390 GGAGGTCGATTCAAACTCATACAAAT 59.684 38.462 0.00 0.00 0.00 2.32
371 404 5.642063 GGAGGTCGATTCAAACTCATACAAA 59.358 40.000 0.00 0.00 0.00 2.83
388 421 2.423926 ATCGATCGATTTGGAGGTCG 57.576 50.000 24.60 0.00 39.11 4.79
389 422 3.458189 ACAATCGATCGATTTGGAGGTC 58.542 45.455 34.61 0.00 42.30 3.85
391 424 5.769967 GATACAATCGATCGATTTGGAGG 57.230 43.478 34.61 25.78 42.30 4.30
408 441 8.322428 CGTTTTGTATTTGTAGCATACGATACA 58.678 33.333 0.00 9.83 46.99 2.29
409 442 8.533965 TCGTTTTGTATTTGTAGCATACGATAC 58.466 33.333 0.00 0.77 46.99 2.24
410 443 8.631676 TCGTTTTGTATTTGTAGCATACGATA 57.368 30.769 0.00 0.00 46.99 2.92
411 444 7.490079 TCTCGTTTTGTATTTGTAGCATACGAT 59.510 33.333 0.00 0.00 46.99 3.73
414 447 9.601971 TTTTCTCGTTTTGTATTTGTAGCATAC 57.398 29.630 0.00 0.00 43.42 2.39
416 449 9.180678 CTTTTTCTCGTTTTGTATTTGTAGCAT 57.819 29.630 0.00 0.00 0.00 3.79
417 450 7.166804 GCTTTTTCTCGTTTTGTATTTGTAGCA 59.833 33.333 0.00 0.00 0.00 3.49
418 451 7.166804 TGCTTTTTCTCGTTTTGTATTTGTAGC 59.833 33.333 0.00 0.00 0.00 3.58
419 452 8.555166 TGCTTTTTCTCGTTTTGTATTTGTAG 57.445 30.769 0.00 0.00 0.00 2.74
421 454 7.820044 TTGCTTTTTCTCGTTTTGTATTTGT 57.180 28.000 0.00 0.00 0.00 2.83
423 456 8.696410 TCTTTGCTTTTTCTCGTTTTGTATTT 57.304 26.923 0.00 0.00 0.00 1.40
425 458 7.044314 CGTTCTTTGCTTTTTCTCGTTTTGTAT 60.044 33.333 0.00 0.00 0.00 2.29
427 460 5.060446 CGTTCTTTGCTTTTTCTCGTTTTGT 59.940 36.000 0.00 0.00 0.00 2.83
428 461 5.471962 CGTTCTTTGCTTTTTCTCGTTTTG 58.528 37.500 0.00 0.00 0.00 2.44
429 462 4.561213 CCGTTCTTTGCTTTTTCTCGTTTT 59.439 37.500 0.00 0.00 0.00 2.43
430 463 4.102649 CCGTTCTTTGCTTTTTCTCGTTT 58.897 39.130 0.00 0.00 0.00 3.60
431 464 3.691498 CCGTTCTTTGCTTTTTCTCGTT 58.309 40.909 0.00 0.00 0.00 3.85
433 466 2.044135 GCCGTTCTTTGCTTTTTCTCG 58.956 47.619 0.00 0.00 0.00 4.04
434 467 3.078594 TGCCGTTCTTTGCTTTTTCTC 57.921 42.857 0.00 0.00 0.00 2.87
440 473 0.459489 TTGCTTGCCGTTCTTTGCTT 59.541 45.000 0.00 0.00 0.00 3.91
441 474 0.459489 TTTGCTTGCCGTTCTTTGCT 59.541 45.000 0.00 0.00 0.00 3.91
442 475 0.576798 GTTTGCTTGCCGTTCTTTGC 59.423 50.000 0.00 0.00 0.00 3.68
443 476 0.845768 CGTTTGCTTGCCGTTCTTTG 59.154 50.000 0.00 0.00 0.00 2.77
444 477 0.248866 CCGTTTGCTTGCCGTTCTTT 60.249 50.000 0.00 0.00 0.00 2.52
445 478 1.098712 TCCGTTTGCTTGCCGTTCTT 61.099 50.000 0.00 0.00 0.00 2.52
446 479 1.507141 CTCCGTTTGCTTGCCGTTCT 61.507 55.000 0.00 0.00 0.00 3.01
447 480 1.082104 CTCCGTTTGCTTGCCGTTC 60.082 57.895 0.00 0.00 0.00 3.95
448 481 3.030652 CTCCGTTTGCTTGCCGTT 58.969 55.556 0.00 0.00 0.00 4.44
449 482 3.660111 GCTCCGTTTGCTTGCCGT 61.660 61.111 0.00 0.00 0.00 5.68
450 483 4.404654 GGCTCCGTTTGCTTGCCG 62.405 66.667 0.00 0.00 33.96 5.69
451 484 4.404654 CGGCTCCGTTTGCTTGCC 62.405 66.667 0.00 0.00 40.14 4.52
452 485 3.314388 CTCGGCTCCGTTTGCTTGC 62.314 63.158 8.28 0.00 40.74 4.01
453 486 2.680913 CCTCGGCTCCGTTTGCTTG 61.681 63.158 8.28 0.00 40.74 4.01
487 520 2.665052 CGATACGAGTACCATCGATCGA 59.335 50.000 21.86 21.86 45.13 3.59
697 740 1.982660 CCATGTAGTAGCGAGGAGGA 58.017 55.000 0.00 0.00 0.00 3.71
1077 1136 0.761802 GCCACCCCAAAACCAATCAA 59.238 50.000 0.00 0.00 0.00 2.57
1136 1195 4.144703 GAAGGTCGTCCCCTCCGC 62.145 72.222 0.00 0.00 32.13 5.54
1298 1357 9.455847 GGCATAAATAAAGAAATGCTACAGAAG 57.544 33.333 6.16 0.00 43.33 2.85
1299 1358 8.965819 TGGCATAAATAAAGAAATGCTACAGAA 58.034 29.630 6.16 0.00 43.33 3.02
1448 1515 8.004801 TCCTAGTCTATCCACAGAATCAACATA 58.995 37.037 0.00 0.00 0.00 2.29
1469 1536 2.871182 TGCTAACACGCTCATCCTAG 57.129 50.000 0.00 0.00 0.00 3.02
1478 1545 3.469899 TCAAATGTCATGCTAACACGC 57.530 42.857 0.00 0.00 0.00 5.34
1479 1546 7.850501 TGTATATCAAATGTCATGCTAACACG 58.149 34.615 0.00 0.00 0.00 4.49
1486 1553 7.143340 ACAGCATTGTATATCAAATGTCATGC 58.857 34.615 10.41 0.00 39.62 4.06
1515 1582 3.620488 GGTCTAATCCAACATGAAGCCA 58.380 45.455 0.00 0.00 0.00 4.75
1530 1597 5.425539 CCAACAGATAAAGGAGAGGGTCTAA 59.574 44.000 0.00 0.00 0.00 2.10
1694 1792 7.159322 TCCTGAGTAGAACTTGACATAACTC 57.841 40.000 0.00 0.00 34.00 3.01
1775 1873 5.483685 TGTAGACTATGACAGGCAAACTT 57.516 39.130 0.00 0.00 32.94 2.66
1779 1877 6.939730 TCAAATTTGTAGACTATGACAGGCAA 59.060 34.615 17.47 0.00 32.94 4.52
1785 1883 9.979270 CATGAAGTCAAATTTGTAGACTATGAC 57.021 33.333 17.47 5.64 41.45 3.06
1824 1922 3.470709 CGATGCATTGGGTAGAATGTCT 58.529 45.455 5.98 0.00 35.98 3.41
1858 1956 9.673454 AAACCAACACGAATACTTCTAAATTTC 57.327 29.630 0.00 0.00 0.00 2.17
1872 1970 8.436046 AGTACACTAAATAAAACCAACACGAA 57.564 30.769 0.00 0.00 0.00 3.85
1906 2004 5.880901 ACCCCTGCTCCAATATAAGTAATG 58.119 41.667 0.00 0.00 0.00 1.90
1911 2009 4.713792 AGAACCCCTGCTCCAATATAAG 57.286 45.455 0.00 0.00 0.00 1.73
1929 2027 1.257743 ACGCTGCCTCTCTTGTAGAA 58.742 50.000 0.00 0.00 32.46 2.10
1971 2069 4.892934 AGACCACCAAGCATAAAACTTTCA 59.107 37.500 0.00 0.00 0.00 2.69
2033 2135 3.002791 ACCGACTTCACATGCAGTAATG 58.997 45.455 0.00 0.00 0.00 1.90
2038 2140 2.370281 ACTACCGACTTCACATGCAG 57.630 50.000 0.00 0.00 0.00 4.41
2084 2187 9.982291 GAAATACGCAAATGTCTAAAATGTCTA 57.018 29.630 0.00 0.00 0.00 2.59
2085 2188 8.511321 TGAAATACGCAAATGTCTAAAATGTCT 58.489 29.630 0.00 0.00 0.00 3.41
2086 2189 8.667987 TGAAATACGCAAATGTCTAAAATGTC 57.332 30.769 0.00 0.00 0.00 3.06
2090 2193 9.232082 GCATATGAAATACGCAAATGTCTAAAA 57.768 29.630 6.97 0.00 38.02 1.52
2091 2194 8.401709 TGCATATGAAATACGCAAATGTCTAAA 58.598 29.630 6.97 0.00 45.87 1.85
2092 2195 7.924940 TGCATATGAAATACGCAAATGTCTAA 58.075 30.769 6.97 0.00 45.87 2.10
2555 2673 8.717821 GGTTGCTTAGAAAACAGAAAAACTTTT 58.282 29.630 0.00 0.00 0.00 2.27
2578 2698 9.480053 CACTGAAAATGTAAATGAAATCTGGTT 57.520 29.630 0.00 0.00 0.00 3.67
2579 2699 8.859090 TCACTGAAAATGTAAATGAAATCTGGT 58.141 29.630 0.00 0.00 0.00 4.00
2621 2741 6.414732 AGATCACATCACTATTCCGGAAAAA 58.585 36.000 23.08 11.70 0.00 1.94
2622 2742 5.989477 AGATCACATCACTATTCCGGAAAA 58.011 37.500 23.08 0.00 0.00 2.29
2623 2743 5.614324 AGATCACATCACTATTCCGGAAA 57.386 39.130 23.08 4.12 0.00 3.13
2624 2744 6.267699 ACATAGATCACATCACTATTCCGGAA 59.732 38.462 21.37 21.37 0.00 4.30
2625 2745 5.775195 ACATAGATCACATCACTATTCCGGA 59.225 40.000 0.00 0.00 0.00 5.14
2626 2746 6.030548 ACATAGATCACATCACTATTCCGG 57.969 41.667 0.00 0.00 0.00 5.14
2627 2747 7.115520 GTCAACATAGATCACATCACTATTCCG 59.884 40.741 0.00 0.00 0.00 4.30
2628 2748 7.928167 TGTCAACATAGATCACATCACTATTCC 59.072 37.037 0.00 0.00 0.00 3.01
2629 2749 8.877808 TGTCAACATAGATCACATCACTATTC 57.122 34.615 0.00 0.00 0.00 1.75
2630 2750 9.269453 CATGTCAACATAGATCACATCACTATT 57.731 33.333 0.00 0.00 34.26 1.73
2631 2751 8.427276 ACATGTCAACATAGATCACATCACTAT 58.573 33.333 0.00 0.00 34.26 2.12
2632 2752 7.785033 ACATGTCAACATAGATCACATCACTA 58.215 34.615 0.00 0.00 34.26 2.74
2633 2753 6.647229 ACATGTCAACATAGATCACATCACT 58.353 36.000 0.00 0.00 34.26 3.41
2634 2754 6.915544 ACATGTCAACATAGATCACATCAC 57.084 37.500 0.00 0.00 34.26 3.06
2635 2755 6.880529 ACAACATGTCAACATAGATCACATCA 59.119 34.615 0.00 0.00 34.26 3.07
2636 2756 7.312657 ACAACATGTCAACATAGATCACATC 57.687 36.000 0.00 0.00 34.26 3.06
2637 2757 7.496920 CCTACAACATGTCAACATAGATCACAT 59.503 37.037 0.00 0.00 34.26 3.21
2638 2758 6.818142 CCTACAACATGTCAACATAGATCACA 59.182 38.462 0.00 0.00 34.26 3.58
2639 2759 6.238211 GCCTACAACATGTCAACATAGATCAC 60.238 42.308 0.00 0.00 34.26 3.06
2680 2800 1.599419 GCACCAACAAATGTGACGACC 60.599 52.381 0.00 0.00 34.37 4.79
2833 2953 8.621286 GTCGGGAGTCACAAAAATATCAAATAT 58.379 33.333 0.00 0.00 0.00 1.28
3001 3121 9.979897 CAATGGATGATATAATTTAGAGGGGAA 57.020 33.333 0.00 0.00 0.00 3.97
3048 3168 2.050144 TGGCCTGGCAAATGGTAAAAA 58.950 42.857 22.05 0.00 0.00 1.94
3055 3175 1.363145 CGCAATTGGCCTGGCAAATG 61.363 55.000 21.67 15.74 40.31 2.32
3563 3684 4.491676 AGACATGTGAAAATGCAGCAATC 58.508 39.130 1.15 0.00 0.00 2.67
3625 3748 2.041115 GCCTCTCCCAAGGAAACGC 61.041 63.158 0.00 0.00 38.87 4.84
3734 3857 6.723298 AGAAGTCCATTGTCCTGTATAGAG 57.277 41.667 0.00 0.00 0.00 2.43
3851 3974 1.542492 AGCTCTCCAAAGCAACCATG 58.458 50.000 0.00 0.00 45.00 3.66
3877 4000 9.566432 AAGACCATAGACCAAATCAATTATCTC 57.434 33.333 0.00 0.00 0.00 2.75
3915 4038 9.359653 CCCAAGACCAAATCAATTATCTCTATT 57.640 33.333 0.00 0.00 0.00 1.73
3916 4039 7.946776 CCCCAAGACCAAATCAATTATCTCTAT 59.053 37.037 0.00 0.00 0.00 1.98
3918 4041 6.131961 CCCCAAGACCAAATCAATTATCTCT 58.868 40.000 0.00 0.00 0.00 3.10
3919 4042 5.893824 ACCCCAAGACCAAATCAATTATCTC 59.106 40.000 0.00 0.00 0.00 2.75
3921 4044 7.839680 ATACCCCAAGACCAAATCAATTATC 57.160 36.000 0.00 0.00 0.00 1.75
3930 4053 9.291516 AGCATATATATATACCCCAAGACCAAA 57.708 33.333 4.54 0.00 0.00 3.28
3931 4054 8.869986 AGCATATATATATACCCCAAGACCAA 57.130 34.615 4.54 0.00 0.00 3.67
3933 4056 8.714906 ACAAGCATATATATATACCCCAAGACC 58.285 37.037 4.54 0.00 0.00 3.85
3973 4226 6.194235 AGTTCCTCTGTCTCATTCATACTCT 58.806 40.000 0.00 0.00 0.00 3.24
4079 4332 4.826274 ACTATGAGCAAAGCCTCTAACA 57.174 40.909 0.00 0.00 33.02 2.41
4156 4410 0.907486 CTCCCACTTCCAGCATCAGA 59.093 55.000 0.00 0.00 0.00 3.27
4193 4447 2.238646 CCAGACATAACACCCCTTAGCA 59.761 50.000 0.00 0.00 0.00 3.49
4405 4948 7.787725 TCTGAAAAGGAGTCTTTAGTTTGAC 57.212 36.000 0.00 0.00 41.92 3.18
4525 5078 8.633075 TCTAAAGATTTTCTGCAAGTGTTTTG 57.367 30.769 0.00 0.00 33.76 2.44
4633 5186 1.181731 TATGGGGCAGAGGGGGTATA 58.818 55.000 0.00 0.00 0.00 1.47
4634 5187 0.273781 TTATGGGGCAGAGGGGGTAT 59.726 55.000 0.00 0.00 0.00 2.73
4635 5188 0.273781 ATTATGGGGCAGAGGGGGTA 59.726 55.000 0.00 0.00 0.00 3.69
4636 5189 0.273781 TATTATGGGGCAGAGGGGGT 59.726 55.000 0.00 0.00 0.00 4.95
4637 5190 1.686236 ATATTATGGGGCAGAGGGGG 58.314 55.000 0.00 0.00 0.00 5.40
4638 5191 4.111577 TCTTATATTATGGGGCAGAGGGG 58.888 47.826 0.00 0.00 0.00 4.79
4639 5192 4.785376 ACTCTTATATTATGGGGCAGAGGG 59.215 45.833 0.00 0.00 32.21 4.30
4644 5206 6.998074 CAGAAACACTCTTATATTATGGGGCA 59.002 38.462 0.00 0.00 29.07 5.36
4645 5207 7.173390 GTCAGAAACACTCTTATATTATGGGGC 59.827 40.741 0.00 0.00 29.07 5.80
4646 5208 8.210946 TGTCAGAAACACTCTTATATTATGGGG 58.789 37.037 0.00 0.00 31.20 4.96
4672 5234 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
4676 5238 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4680 5242 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4681 5243 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4682 5244 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4683 5245 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4684 5246 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4685 5247 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4686 5248 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4687 5249 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4688 5250 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4689 5251 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4690 5252 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4691 5253 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4692 5254 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4693 5255 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4694 5256 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4695 5257 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4696 5258 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4697 5259 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4698 5260 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4699 5261 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
4700 5262 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4701 5263 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4702 5264 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
4703 5265 2.172717 CAAAATACTCCCTCCGTCCCAT 59.827 50.000 0.00 0.00 0.00 4.00
4704 5266 1.557832 CAAAATACTCCCTCCGTCCCA 59.442 52.381 0.00 0.00 0.00 4.37
4705 5267 1.558294 ACAAAATACTCCCTCCGTCCC 59.442 52.381 0.00 0.00 0.00 4.46
4706 5268 3.345508 AACAAAATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
4707 5269 4.576879 AGAAACAAAATACTCCCTCCGTC 58.423 43.478 0.00 0.00 0.00 4.79
4708 5270 4.635699 AGAAACAAAATACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
4709 5271 5.122396 CAGAAGAAACAAAATACTCCCTCCG 59.878 44.000 0.00 0.00 0.00 4.63
4710 5272 5.416013 CCAGAAGAAACAAAATACTCCCTCC 59.584 44.000 0.00 0.00 0.00 4.30
4711 5273 6.004574 ACCAGAAGAAACAAAATACTCCCTC 58.995 40.000 0.00 0.00 0.00 4.30
4712 5274 5.770162 CACCAGAAGAAACAAAATACTCCCT 59.230 40.000 0.00 0.00 0.00 4.20
4713 5275 5.564848 GCACCAGAAGAAACAAAATACTCCC 60.565 44.000 0.00 0.00 0.00 4.30
4714 5276 5.241728 AGCACCAGAAGAAACAAAATACTCC 59.758 40.000 0.00 0.00 0.00 3.85
4715 5277 6.319141 AGCACCAGAAGAAACAAAATACTC 57.681 37.500 0.00 0.00 0.00 2.59
4716 5278 6.715347 AAGCACCAGAAGAAACAAAATACT 57.285 33.333 0.00 0.00 0.00 2.12
4779 5343 2.436173 GAGGATTTGTAGACTGGAGGGG 59.564 54.545 0.00 0.00 0.00 4.79
4930 5574 3.950395 GTCAAGAAAATGCCCAGAGCTAT 59.050 43.478 0.00 0.00 44.23 2.97
5017 5663 4.095483 CCAAGATTAGTCAATGCACTGGTC 59.905 45.833 0.00 0.00 0.00 4.02
5048 5694 6.989169 CGTTCTTCCTCTCCTGAAATGAATAT 59.011 38.462 0.00 0.00 0.00 1.28
5050 5697 5.181748 CGTTCTTCCTCTCCTGAAATGAAT 58.818 41.667 0.00 0.00 0.00 2.57
5263 5913 8.367911 TGAGACATCACAATAACAAGAGTAGTT 58.632 33.333 0.00 0.00 0.00 2.24
5265 5915 8.815189 CATGAGACATCACAATAACAAGAGTAG 58.185 37.037 0.00 0.00 38.57 2.57
5270 5920 6.025896 GCACATGAGACATCACAATAACAAG 58.974 40.000 0.00 0.00 38.57 3.16
5279 5929 3.679980 AGTAAACGCACATGAGACATCAC 59.320 43.478 0.00 0.00 38.57 3.06
5281 5931 4.152402 ACAAGTAAACGCACATGAGACATC 59.848 41.667 0.00 0.00 0.00 3.06
5287 5937 3.874543 ACTTCACAAGTAAACGCACATGA 59.125 39.130 0.00 0.00 40.69 3.07
5308 5958 8.888579 AGTATATGCCAGTCATAACAACTTAC 57.111 34.615 0.00 0.00 40.73 2.34
5315 5965 5.869888 GGCTGTAGTATATGCCAGTCATAAC 59.130 44.000 0.00 0.00 40.73 1.89
5316 5966 5.046591 GGGCTGTAGTATATGCCAGTCATAA 60.047 44.000 5.21 0.00 42.32 1.90
5317 5967 4.466370 GGGCTGTAGTATATGCCAGTCATA 59.534 45.833 5.21 0.00 42.32 2.15
5318 5968 3.261897 GGGCTGTAGTATATGCCAGTCAT 59.738 47.826 5.21 0.00 42.32 3.06
5319 5969 2.632996 GGGCTGTAGTATATGCCAGTCA 59.367 50.000 5.21 0.00 42.32 3.41
5320 5970 2.632996 TGGGCTGTAGTATATGCCAGTC 59.367 50.000 5.21 0.00 42.32 3.51
5321 5971 2.634940 CTGGGCTGTAGTATATGCCAGT 59.365 50.000 5.21 0.00 42.32 4.00
5322 5972 2.027745 CCTGGGCTGTAGTATATGCCAG 60.028 54.545 5.21 0.00 42.32 4.85
5323 5973 1.977854 CCTGGGCTGTAGTATATGCCA 59.022 52.381 5.21 0.00 42.32 4.92
5457 6107 2.092968 TCAGGAAGCCGAGCAAATATGT 60.093 45.455 0.00 0.00 0.00 2.29
5488 6138 0.953003 GCGGCTACGGTTAGATCTCT 59.047 55.000 0.00 0.00 41.36 3.10
5493 6143 2.713967 GGTGGCGGCTACGGTTAGA 61.714 63.158 11.43 0.00 41.36 2.10
5500 6150 1.367840 CATAGGAGGTGGCGGCTAC 59.632 63.158 11.43 8.09 0.00 3.58
5509 6159 1.146982 GAGAGAGAGGGCATAGGAGGT 59.853 57.143 0.00 0.00 0.00 3.85
5516 6166 2.318908 GTCATGAGAGAGAGAGGGCAT 58.681 52.381 0.00 0.00 0.00 4.40
5517 6167 1.774110 GTCATGAGAGAGAGAGGGCA 58.226 55.000 0.00 0.00 0.00 5.36
5554 6206 1.578206 GCGTGAAGGAAGGCAAGGTC 61.578 60.000 0.00 0.00 0.00 3.85
5559 6211 1.600636 CTTGGCGTGAAGGAAGGCA 60.601 57.895 0.00 0.00 36.82 4.75
5568 6220 4.344865 GAAGGGGGCTTGGCGTGA 62.345 66.667 0.00 0.00 0.00 4.35
5603 6255 3.598693 AGGTTCCTACTAGGTCTAGCC 57.401 52.381 1.83 0.00 36.53 3.93
5604 6256 4.074259 GCTAGGTTCCTACTAGGTCTAGC 58.926 52.174 23.19 23.19 42.93 3.42
5612 6264 5.722172 TGGTAGAAGCTAGGTTCCTACTA 57.278 43.478 26.83 21.43 0.00 1.82
5613 6265 4.604784 TGGTAGAAGCTAGGTTCCTACT 57.395 45.455 26.83 13.74 0.00 2.57
5635 6287 5.772004 AGTCTAAGACACCTGATACCAGAT 58.228 41.667 0.00 0.00 37.53 2.90
5653 6305 1.947456 CGGTGGTCATGATCGAGTCTA 59.053 52.381 0.00 0.00 0.00 2.59
5656 6308 1.141881 GCGGTGGTCATGATCGAGT 59.858 57.895 0.00 0.00 0.00 4.18
5679 6331 2.581354 GATCAGGGACAGCGTGCT 59.419 61.111 0.00 0.00 0.00 4.40
5680 6332 2.887568 CGATCAGGGACAGCGTGC 60.888 66.667 0.00 0.00 0.00 5.34
5693 6345 2.194889 GGAGGAGACCGACCCGATC 61.195 68.421 0.00 0.00 0.00 3.69
5694 6346 2.123812 GGAGGAGACCGACCCGAT 60.124 66.667 0.00 0.00 0.00 4.18
5703 6355 4.821589 CCAAGCGGCGGAGGAGAC 62.822 72.222 9.78 0.00 0.00 3.36
5734 6387 3.068064 TGAGCACGATGGAGGCGA 61.068 61.111 0.00 0.00 0.00 5.54
5739 6392 3.770040 CGGGGTGAGCACGATGGA 61.770 66.667 0.00 0.00 0.00 3.41
5742 6395 3.461773 CTCCGGGGTGAGCACGAT 61.462 66.667 8.30 0.00 0.00 3.73
5755 6408 0.743688 CTCCACTGTCATCTCCTCCG 59.256 60.000 0.00 0.00 0.00 4.63
5768 6421 2.120718 AGGTCCCGAAGCTCCACT 59.879 61.111 0.00 0.00 0.00 4.00
5769 6422 2.266055 CAGGTCCCGAAGCTCCAC 59.734 66.667 0.00 0.00 31.91 4.02
5770 6423 2.119611 TCAGGTCCCGAAGCTCCA 59.880 61.111 0.00 0.00 31.91 3.86
5771 6424 1.950973 GAGTCAGGTCCCGAAGCTCC 61.951 65.000 0.00 0.00 31.91 4.70
5773 6426 1.228894 TGAGTCAGGTCCCGAAGCT 60.229 57.895 0.00 0.00 35.64 3.74
5796 6449 2.223805 ACACATGCGCTAGATCGATGAA 60.224 45.455 9.73 0.00 0.00 2.57
5799 6452 1.338020 TCACACATGCGCTAGATCGAT 59.662 47.619 9.73 0.00 0.00 3.59
5800 6453 0.738389 TCACACATGCGCTAGATCGA 59.262 50.000 9.73 0.00 0.00 3.59
5801 6454 1.718178 GATCACACATGCGCTAGATCG 59.282 52.381 9.73 0.00 0.00 3.69
5802 6455 3.023946 AGATCACACATGCGCTAGATC 57.976 47.619 9.73 11.77 33.79 2.75
5803 6456 3.465742 AAGATCACACATGCGCTAGAT 57.534 42.857 9.73 2.72 0.00 1.98
5804 6457 2.967599 AAGATCACACATGCGCTAGA 57.032 45.000 9.73 0.00 0.00 2.43
5805 6458 3.620374 AGAAAAGATCACACATGCGCTAG 59.380 43.478 9.73 3.08 0.00 3.42
5806 6459 3.599343 AGAAAAGATCACACATGCGCTA 58.401 40.909 9.73 0.00 0.00 4.26
5807 6460 2.430465 AGAAAAGATCACACATGCGCT 58.570 42.857 9.73 0.00 0.00 5.92
5808 6461 2.907910 AGAAAAGATCACACATGCGC 57.092 45.000 0.00 0.00 0.00 6.09
5809 6462 4.151258 ACAAGAAAAGATCACACATGCG 57.849 40.909 0.00 0.00 0.00 4.73
5810 6463 4.682860 CCAACAAGAAAAGATCACACATGC 59.317 41.667 0.00 0.00 0.00 4.06
5811 6464 5.835257 ACCAACAAGAAAAGATCACACATG 58.165 37.500 0.00 0.00 0.00 3.21
5812 6465 6.096705 TCAACCAACAAGAAAAGATCACACAT 59.903 34.615 0.00 0.00 0.00 3.21
5813 6466 5.417266 TCAACCAACAAGAAAAGATCACACA 59.583 36.000 0.00 0.00 0.00 3.72
5814 6467 5.890334 TCAACCAACAAGAAAAGATCACAC 58.110 37.500 0.00 0.00 0.00 3.82
5815 6468 5.652014 ACTCAACCAACAAGAAAAGATCACA 59.348 36.000 0.00 0.00 0.00 3.58
5816 6469 5.973565 CACTCAACCAACAAGAAAAGATCAC 59.026 40.000 0.00 0.00 0.00 3.06
5817 6470 5.885352 TCACTCAACCAACAAGAAAAGATCA 59.115 36.000 0.00 0.00 0.00 2.92
5818 6471 6.377327 TCACTCAACCAACAAGAAAAGATC 57.623 37.500 0.00 0.00 0.00 2.75
5819 6472 6.966534 ATCACTCAACCAACAAGAAAAGAT 57.033 33.333 0.00 0.00 0.00 2.40
5820 6473 6.603201 AGAATCACTCAACCAACAAGAAAAGA 59.397 34.615 0.00 0.00 0.00 2.52
5821 6474 6.799512 AGAATCACTCAACCAACAAGAAAAG 58.200 36.000 0.00 0.00 0.00 2.27
5822 6475 6.773976 AGAATCACTCAACCAACAAGAAAA 57.226 33.333 0.00 0.00 0.00 2.29
5823 6476 6.377327 GAGAATCACTCAACCAACAAGAAA 57.623 37.500 0.00 0.00 44.36 2.52
5836 6489 4.082463 AGAGGAAACACGAGAGAATCACTC 60.082 45.833 0.00 0.00 45.22 3.51
5837 6490 3.829601 AGAGGAAACACGAGAGAATCACT 59.170 43.478 0.00 0.00 37.82 3.41
5838 6491 4.181309 AGAGGAAACACGAGAGAATCAC 57.819 45.455 0.00 0.00 37.82 3.06
5839 6492 4.039245 ACAAGAGGAAACACGAGAGAATCA 59.961 41.667 0.00 0.00 37.82 2.57
5840 6493 4.387256 CACAAGAGGAAACACGAGAGAATC 59.613 45.833 0.00 0.00 0.00 2.52
5841 6494 4.202264 ACACAAGAGGAAACACGAGAGAAT 60.202 41.667 0.00 0.00 0.00 2.40
5842 6495 3.132289 ACACAAGAGGAAACACGAGAGAA 59.868 43.478 0.00 0.00 0.00 2.87
5843 6496 2.693591 ACACAAGAGGAAACACGAGAGA 59.306 45.455 0.00 0.00 0.00 3.10
5844 6497 3.099267 ACACAAGAGGAAACACGAGAG 57.901 47.619 0.00 0.00 0.00 3.20
5845 6498 3.536956 AACACAAGAGGAAACACGAGA 57.463 42.857 0.00 0.00 0.00 4.04
5846 6499 4.495844 GGAAAACACAAGAGGAAACACGAG 60.496 45.833 0.00 0.00 0.00 4.18
5847 6500 3.375922 GGAAAACACAAGAGGAAACACGA 59.624 43.478 0.00 0.00 0.00 4.35
5848 6501 3.488553 GGGAAAACACAAGAGGAAACACG 60.489 47.826 0.00 0.00 0.00 4.49
5849 6502 3.699538 AGGGAAAACACAAGAGGAAACAC 59.300 43.478 0.00 0.00 0.00 3.32
5850 6503 3.951680 GAGGGAAAACACAAGAGGAAACA 59.048 43.478 0.00 0.00 0.00 2.83
5851 6504 3.003378 CGAGGGAAAACACAAGAGGAAAC 59.997 47.826 0.00 0.00 0.00 2.78
5852 6505 3.211045 CGAGGGAAAACACAAGAGGAAA 58.789 45.455 0.00 0.00 0.00 3.13
5853 6506 2.171870 ACGAGGGAAAACACAAGAGGAA 59.828 45.455 0.00 0.00 0.00 3.36
5854 6507 1.766496 ACGAGGGAAAACACAAGAGGA 59.234 47.619 0.00 0.00 0.00 3.71
5855 6508 2.256117 ACGAGGGAAAACACAAGAGG 57.744 50.000 0.00 0.00 0.00 3.69
5856 6509 4.024302 GGTAAACGAGGGAAAACACAAGAG 60.024 45.833 0.00 0.00 0.00 2.85
5857 6510 3.878699 GGTAAACGAGGGAAAACACAAGA 59.121 43.478 0.00 0.00 0.00 3.02
5858 6511 3.004002 GGGTAAACGAGGGAAAACACAAG 59.996 47.826 0.00 0.00 0.00 3.16
5859 6512 2.950975 GGGTAAACGAGGGAAAACACAA 59.049 45.455 0.00 0.00 0.00 3.33
5860 6513 2.574450 GGGTAAACGAGGGAAAACACA 58.426 47.619 0.00 0.00 0.00 3.72
5861 6514 1.881973 GGGGTAAACGAGGGAAAACAC 59.118 52.381 0.00 0.00 0.00 3.32
5862 6515 1.776063 AGGGGTAAACGAGGGAAAACA 59.224 47.619 0.00 0.00 0.00 2.83
5863 6516 2.430465 GAGGGGTAAACGAGGGAAAAC 58.570 52.381 0.00 0.00 0.00 2.43
5864 6517 1.002315 CGAGGGGTAAACGAGGGAAAA 59.998 52.381 0.00 0.00 0.00 2.29
5865 6518 0.609662 CGAGGGGTAAACGAGGGAAA 59.390 55.000 0.00 0.00 0.00 3.13
5866 6519 0.542702 ACGAGGGGTAAACGAGGGAA 60.543 55.000 0.00 0.00 0.00 3.97
5867 6520 1.077265 ACGAGGGGTAAACGAGGGA 59.923 57.895 0.00 0.00 0.00 4.20
5868 6521 1.217244 CACGAGGGGTAAACGAGGG 59.783 63.158 0.00 0.00 0.00 4.30
5869 6522 0.319405 AACACGAGGGGTAAACGAGG 59.681 55.000 0.00 0.00 0.00 4.63
5870 6523 1.271656 AGAACACGAGGGGTAAACGAG 59.728 52.381 0.00 0.00 0.00 4.18
5871 6524 1.331214 AGAACACGAGGGGTAAACGA 58.669 50.000 0.00 0.00 0.00 3.85
5872 6525 2.064014 GAAGAACACGAGGGGTAAACG 58.936 52.381 0.00 0.00 0.00 3.60
5873 6526 2.064014 CGAAGAACACGAGGGGTAAAC 58.936 52.381 0.00 0.00 0.00 2.01
5874 6527 1.688197 ACGAAGAACACGAGGGGTAAA 59.312 47.619 0.00 0.00 34.70 2.01
5875 6528 1.000060 CACGAAGAACACGAGGGGTAA 60.000 52.381 0.00 0.00 34.70 2.85
5876 6529 0.599558 CACGAAGAACACGAGGGGTA 59.400 55.000 0.00 0.00 34.70 3.69
5877 6530 1.366366 CACGAAGAACACGAGGGGT 59.634 57.895 0.00 0.00 34.70 4.95
5878 6531 0.249741 AACACGAAGAACACGAGGGG 60.250 55.000 0.00 0.00 34.70 4.79
5879 6532 1.137513 GAACACGAAGAACACGAGGG 58.862 55.000 0.00 0.00 34.70 4.30
5880 6533 1.137513 GGAACACGAAGAACACGAGG 58.862 55.000 0.00 0.00 34.70 4.63
5893 6546 2.897436 GTGGAACCCTATACGGAACAC 58.103 52.381 0.00 0.00 33.16 3.32
5907 6560 2.344025 GAACGTGATGTAGGGTGGAAC 58.656 52.381 0.00 0.00 0.00 3.62
5908 6561 1.276989 GGAACGTGATGTAGGGTGGAA 59.723 52.381 0.00 0.00 0.00 3.53
5909 6562 0.899720 GGAACGTGATGTAGGGTGGA 59.100 55.000 0.00 0.00 0.00 4.02
5910 6563 0.611200 TGGAACGTGATGTAGGGTGG 59.389 55.000 0.00 0.00 0.00 4.61
5911 6564 1.405526 CCTGGAACGTGATGTAGGGTG 60.406 57.143 0.00 0.00 0.00 4.61
5912 6565 0.902531 CCTGGAACGTGATGTAGGGT 59.097 55.000 0.00 0.00 0.00 4.34
5913 6566 0.178068 CCCTGGAACGTGATGTAGGG 59.822 60.000 8.61 8.61 37.59 3.53
5914 6567 0.462047 GCCCTGGAACGTGATGTAGG 60.462 60.000 0.00 0.00 0.00 3.18
5915 6568 0.249120 TGCCCTGGAACGTGATGTAG 59.751 55.000 0.00 0.00 0.00 2.74
5916 6569 0.908910 ATGCCCTGGAACGTGATGTA 59.091 50.000 0.00 0.00 0.00 2.29
5917 6570 0.392998 GATGCCCTGGAACGTGATGT 60.393 55.000 0.00 0.00 0.00 3.06
5918 6571 1.097547 GGATGCCCTGGAACGTGATG 61.098 60.000 0.00 0.00 0.00 3.07
5919 6572 1.224592 GGATGCCCTGGAACGTGAT 59.775 57.895 0.00 0.00 0.00 3.06
5920 6573 2.668632 GGATGCCCTGGAACGTGA 59.331 61.111 0.00 0.00 0.00 4.35
5921 6574 2.819595 CGGATGCCCTGGAACGTG 60.820 66.667 0.00 0.00 0.00 4.49
5922 6575 4.778143 GCGGATGCCCTGGAACGT 62.778 66.667 0.00 0.00 33.98 3.99
5923 6576 4.776322 TGCGGATGCCCTGGAACG 62.776 66.667 0.00 0.00 41.78 3.95
5924 6577 3.134127 GTGCGGATGCCCTGGAAC 61.134 66.667 0.00 0.00 41.78 3.62
5925 6578 4.424711 GGTGCGGATGCCCTGGAA 62.425 66.667 0.00 0.00 41.78 3.53
5927 6580 4.431131 AAGGTGCGGATGCCCTGG 62.431 66.667 0.00 0.00 40.36 4.45
5980 6633 1.584495 CTCGTGATGGTGGTGACGA 59.416 57.895 0.00 0.00 38.45 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.