Multiple sequence alignment - TraesCS2D01G194100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G194100 chr2D 100.000 4571 0 0 1 4571 139056851 139061421 0.000000e+00 8442.0
1 TraesCS2D01G194100 chr2A 96.233 3212 91 16 1070 4256 161858395 161855189 0.000000e+00 5234.0
2 TraesCS2D01G194100 chr2A 90.691 333 23 6 676 1007 161858813 161858488 1.950000e-118 436.0
3 TraesCS2D01G194100 chr2B 96.039 2903 69 8 1384 4256 197717836 197720722 0.000000e+00 4682.0
4 TraesCS2D01G194100 chr2B 84.937 478 49 14 670 1142 197716996 197717455 3.220000e-126 462.0
5 TraesCS2D01G194100 chr2B 82.018 456 48 16 1 433 197716552 197716996 1.560000e-94 357.0
6 TraesCS2D01G194100 chr2B 84.906 212 30 2 433 644 659525582 659525791 3.580000e-51 213.0
7 TraesCS2D01G194100 chr2B 84.906 212 30 2 433 644 659526354 659526563 3.580000e-51 213.0
8 TraesCS2D01G194100 chr5B 89.172 314 33 1 4255 4568 245961361 245961673 1.540000e-104 390.0
9 TraesCS2D01G194100 chr5B 82.883 222 33 3 433 654 87069408 87069192 1.300000e-45 195.0
10 TraesCS2D01G194100 chr5B 73.810 168 36 3 1 166 571181787 571181948 4.940000e-05 60.2
11 TraesCS2D01G194100 chr1B 88.194 288 31 3 4281 4568 616563047 616563331 1.570000e-89 340.0
12 TraesCS2D01G194100 chr7A 85.374 294 38 5 4276 4569 4305793 4306081 2.670000e-77 300.0
13 TraesCS2D01G194100 chr4D 89.385 179 15 4 4334 4510 326970866 326971042 5.950000e-54 222.0
14 TraesCS2D01G194100 chr1A 83.556 225 34 3 433 656 14073069 14072847 1.670000e-49 207.0
15 TraesCS2D01G194100 chr1A 93.750 48 1 2 4276 4323 61249903 61249948 2.280000e-08 71.3
16 TraesCS2D01G194100 chr3D 83.721 215 33 2 442 656 455868116 455867904 7.750000e-48 202.0
17 TraesCS2D01G194100 chr3D 89.583 48 5 0 1 48 550454704 550454751 1.370000e-05 62.1
18 TraesCS2D01G194100 chr6A 85.789 190 21 5 4347 4534 326543670 326543485 3.610000e-46 196.0
19 TraesCS2D01G194100 chr6A 85.246 61 7 2 4285 4345 184349011 184348953 1.370000e-05 62.1
20 TraesCS2D01G194100 chr7D 86.047 86 5 5 4295 4377 540534967 540535048 8.150000e-13 86.1
21 TraesCS2D01G194100 chr7D 88.889 63 4 3 4263 4325 523119575 523119634 1.760000e-09 75.0
22 TraesCS2D01G194100 chr4A 86.765 68 9 0 302 369 12646761 12646828 4.900000e-10 76.8
23 TraesCS2D01G194100 chr1D 83.333 78 11 2 4295 4371 420640504 420640580 2.280000e-08 71.3
24 TraesCS2D01G194100 chrUn 90.566 53 3 1 97 149 9912579 9912629 8.210000e-08 69.4
25 TraesCS2D01G194100 chr5D 80.682 88 13 3 4288 4373 474551973 474552058 1.060000e-06 65.8
26 TraesCS2D01G194100 chr3A 100.000 28 0 0 1 28 716033281 716033254 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G194100 chr2D 139056851 139061421 4570 False 8442.000000 8442 100.000000 1 4571 1 chr2D.!!$F1 4570
1 TraesCS2D01G194100 chr2A 161855189 161858813 3624 True 2835.000000 5234 93.462000 676 4256 2 chr2A.!!$R1 3580
2 TraesCS2D01G194100 chr2B 197716552 197720722 4170 False 1833.666667 4682 87.664667 1 4256 3 chr2B.!!$F1 4255
3 TraesCS2D01G194100 chr2B 659525582 659526563 981 False 213.000000 213 84.906000 433 644 2 chr2B.!!$F2 211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.179009 CCATCGGCAATGACCAGGAT 60.179 55.0 0.00 0.0 37.59 3.24 F
488 512 0.179034 GACTGGCCATCCATCCTGAC 60.179 60.0 5.51 0.0 42.51 3.51 F
1067 1130 0.036294 AGTTCAGAACGCCTAAGCCC 60.036 55.0 7.68 0.0 36.23 5.19 F
1377 1450 0.335361 TCCACCTCTACACCCTCTCC 59.665 60.0 0.00 0.0 0.00 3.71 F
2070 2279 0.450583 TTACTAGCGTCCTGAGTGCG 59.549 55.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1111 0.036294 GGGCTTAGGCGTTCTGAACT 60.036 55.000 17.60 2.8 39.81 3.01 R
1602 1811 0.908198 GAAGGGAGTCAGAGGCATGT 59.092 55.000 0.00 0.0 0.00 3.21 R
2070 2279 1.372872 GAACCCGGCATTTGCACAC 60.373 57.895 4.74 0.0 44.36 3.82 R
2373 2582 2.779430 TGCAAGACCTCCATGGACATAT 59.221 45.455 11.44 0.0 39.71 1.78 R
3578 4053 0.751452 TGCCATGACAGCAAGCAAAA 59.249 45.000 0.00 0.0 37.28 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.278419 CCTTATTCCATTTTTAGGGAGCCG 59.722 45.833 0.00 0.00 34.02 5.52
37 38 1.675641 GAGCCGCCATCACCTTGTT 60.676 57.895 0.00 0.00 0.00 2.83
51 52 4.828939 TCACCTTGTTTTTCTGAGCATGAT 59.171 37.500 0.00 0.00 0.00 2.45
55 56 6.072286 ACCTTGTTTTTCTGAGCATGATACAG 60.072 38.462 0.00 0.13 0.00 2.74
67 68 3.750130 GCATGATACAGACCATAAGCAGG 59.250 47.826 0.00 0.00 0.00 4.85
68 69 4.744867 GCATGATACAGACCATAAGCAGGT 60.745 45.833 0.00 0.00 43.46 4.00
70 71 5.023533 TGATACAGACCATAAGCAGGTTC 57.976 43.478 0.00 0.00 40.09 3.62
71 72 4.716784 TGATACAGACCATAAGCAGGTTCT 59.283 41.667 0.00 0.00 40.09 3.01
72 73 5.897250 TGATACAGACCATAAGCAGGTTCTA 59.103 40.000 0.00 0.00 40.09 2.10
73 74 4.744795 ACAGACCATAAGCAGGTTCTAG 57.255 45.455 0.00 0.00 40.09 2.43
74 75 4.353777 ACAGACCATAAGCAGGTTCTAGA 58.646 43.478 0.00 0.00 40.09 2.43
75 76 4.777896 ACAGACCATAAGCAGGTTCTAGAA 59.222 41.667 0.00 0.00 40.09 2.10
76 77 5.248477 ACAGACCATAAGCAGGTTCTAGAAA 59.752 40.000 6.78 0.00 40.09 2.52
77 78 5.582665 CAGACCATAAGCAGGTTCTAGAAAC 59.417 44.000 12.89 12.89 40.09 2.78
78 79 5.248477 AGACCATAAGCAGGTTCTAGAAACA 59.752 40.000 22.29 1.49 40.09 2.83
79 80 5.246307 ACCATAAGCAGGTTCTAGAAACAC 58.754 41.667 22.29 13.54 35.33 3.32
87 88 6.262496 AGCAGGTTCTAGAAACACCTAAAAAC 59.738 38.462 22.29 6.69 39.01 2.43
88 89 6.038936 GCAGGTTCTAGAAACACCTAAAAACA 59.961 38.462 22.29 0.00 39.01 2.83
113 114 1.153086 GAGCACTCCCATCGGCAAT 60.153 57.895 0.00 0.00 0.00 3.56
122 123 0.179009 CCATCGGCAATGACCAGGAT 60.179 55.000 0.00 0.00 37.59 3.24
130 131 2.593468 AATGACCAGGATCCACCGCG 62.593 60.000 15.82 0.00 44.74 6.46
134 135 2.892425 CAGGATCCACCGCGCTTC 60.892 66.667 15.82 0.00 44.74 3.86
149 150 0.182299 GCTTCCATGGCTCTAAGGCT 59.818 55.000 6.96 0.00 41.96 4.58
167 169 2.035832 GGCTACAAGAGAGAGGCAGATC 59.964 54.545 0.00 0.00 35.89 2.75
168 170 2.692557 GCTACAAGAGAGAGGCAGATCA 59.307 50.000 0.00 0.00 0.00 2.92
170 172 1.481772 ACAAGAGAGAGGCAGATCAGC 59.518 52.381 0.60 0.60 0.00 4.26
180 182 1.773054 GCAGATCAGCAGCATCACCG 61.773 60.000 5.05 0.00 0.00 4.94
182 184 2.515523 ATCAGCAGCATCACCGGC 60.516 61.111 0.00 0.00 0.00 6.13
183 185 3.333899 ATCAGCAGCATCACCGGCA 62.334 57.895 0.00 0.00 0.00 5.69
203 205 1.062810 AGGAGGCGGAAAGTCCTAGAT 60.063 52.381 0.00 0.00 39.03 1.98
208 210 1.808133 GCGGAAAGTCCTAGATGCCTG 60.808 57.143 0.00 0.00 33.30 4.85
239 241 2.748465 CGTGGGGAGGAGAAAAGTGTTT 60.748 50.000 0.00 0.00 0.00 2.83
247 249 3.626217 AGGAGAAAAGTGTTTCGTTGGAC 59.374 43.478 0.00 0.00 46.56 4.02
266 268 1.790387 GTGACGCATTGCAGAGACC 59.210 57.895 9.69 0.00 0.00 3.85
270 272 0.602638 ACGCATTGCAGAGACCGAAA 60.603 50.000 9.69 0.00 0.00 3.46
271 273 0.179215 CGCATTGCAGAGACCGAAAC 60.179 55.000 9.69 0.00 0.00 2.78
272 274 1.160137 GCATTGCAGAGACCGAAACT 58.840 50.000 3.15 0.00 0.00 2.66
321 323 7.496263 TGTCCATTTATATCGATTTTTGTCCGA 59.504 33.333 1.71 0.00 36.72 4.55
327 329 9.724839 TTTATATCGATTTTTGTCCGATTTTCC 57.275 29.630 1.71 0.00 42.23 3.13
328 330 5.637006 ATCGATTTTTGTCCGATTTTCCA 57.363 34.783 0.00 0.00 39.66 3.53
341 343 8.200792 TGTCCGATTTTCCATAAATTAATTGGG 58.799 33.333 0.39 4.64 32.77 4.12
415 439 7.227910 AGTTTCCTTTATAAAACTTCGTGCTGA 59.772 33.333 0.00 0.00 41.67 4.26
421 445 2.038387 AAACTTCGTGCTGACAACCT 57.962 45.000 0.00 0.00 0.00 3.50
422 446 2.902705 AACTTCGTGCTGACAACCTA 57.097 45.000 0.00 0.00 0.00 3.08
436 460 6.808704 GCTGACAACCTAAATTGATTTTCTCC 59.191 38.462 0.00 0.00 33.57 3.71
438 462 7.657336 TGACAACCTAAATTGATTTTCTCCAC 58.343 34.615 0.00 0.00 33.57 4.02
471 495 9.373603 AGTACAACAAAATTTTAAACTTGGGAC 57.626 29.630 2.44 6.21 0.00 4.46
472 496 9.373603 GTACAACAAAATTTTAAACTTGGGACT 57.626 29.630 2.44 0.00 0.00 3.85
473 497 8.262715 ACAACAAAATTTTAAACTTGGGACTG 57.737 30.769 2.44 0.00 0.00 3.51
474 498 7.335673 ACAACAAAATTTTAAACTTGGGACTGG 59.664 33.333 2.44 0.00 0.00 4.00
475 499 5.820423 ACAAAATTTTAAACTTGGGACTGGC 59.180 36.000 2.44 0.00 0.00 4.85
476 500 4.617253 AATTTTAAACTTGGGACTGGCC 57.383 40.909 0.00 0.00 0.00 5.36
477 501 2.757894 TTTAAACTTGGGACTGGCCA 57.242 45.000 4.71 4.71 38.95 5.36
478 502 2.990740 TTAAACTTGGGACTGGCCAT 57.009 45.000 5.51 0.00 38.95 4.40
479 503 2.507407 TAAACTTGGGACTGGCCATC 57.493 50.000 5.51 6.24 38.95 3.51
480 504 0.251787 AAACTTGGGACTGGCCATCC 60.252 55.000 20.18 20.18 38.95 3.51
481 505 1.434513 AACTTGGGACTGGCCATCCA 61.435 55.000 26.00 21.44 40.85 3.41
482 506 1.217057 ACTTGGGACTGGCCATCCAT 61.217 55.000 26.00 11.46 42.51 3.41
483 507 0.466922 CTTGGGACTGGCCATCCATC 60.467 60.000 26.00 14.44 42.51 3.51
484 508 1.936767 TTGGGACTGGCCATCCATCC 61.937 60.000 26.00 20.56 42.51 3.51
485 509 2.081161 GGGACTGGCCATCCATCCT 61.081 63.158 26.00 0.00 42.51 3.24
486 510 1.150081 GGACTGGCCATCCATCCTG 59.850 63.158 22.27 6.15 42.51 3.86
487 511 1.348008 GGACTGGCCATCCATCCTGA 61.348 60.000 22.27 0.00 42.51 3.86
488 512 0.179034 GACTGGCCATCCATCCTGAC 60.179 60.000 5.51 0.00 42.51 3.51
489 513 1.227764 CTGGCCATCCATCCTGACG 60.228 63.158 5.51 0.00 42.51 4.35
490 514 2.592861 GGCCATCCATCCTGACGC 60.593 66.667 0.00 0.00 0.00 5.19
491 515 2.190313 GCCATCCATCCTGACGCA 59.810 61.111 0.00 0.00 0.00 5.24
492 516 1.890979 GCCATCCATCCTGACGCAG 60.891 63.158 0.52 0.52 0.00 5.18
501 525 2.125512 CTGACGCAGGGGCACTAC 60.126 66.667 0.00 0.00 41.24 2.73
502 526 3.989698 CTGACGCAGGGGCACTACG 62.990 68.421 8.06 8.06 41.75 3.51
504 528 2.677524 ACGCAGGGGCACTACGTA 60.678 61.111 14.45 0.00 46.84 3.57
505 529 2.104331 CGCAGGGGCACTACGTAG 59.896 66.667 20.97 20.97 41.24 3.51
506 530 2.707849 CGCAGGGGCACTACGTAGT 61.708 63.158 22.45 22.45 43.09 2.73
507 531 1.141234 GCAGGGGCACTACGTAGTC 59.859 63.158 25.10 18.26 40.72 2.59
508 532 1.432251 CAGGGGCACTACGTAGTCG 59.568 63.158 25.10 19.80 43.93 4.18
524 548 6.497939 CGTAGTCGTTGATTTCTTCTATGG 57.502 41.667 0.00 0.00 0.00 2.74
525 549 6.263344 CGTAGTCGTTGATTTCTTCTATGGA 58.737 40.000 0.00 0.00 0.00 3.41
526 550 6.415280 CGTAGTCGTTGATTTCTTCTATGGAG 59.585 42.308 0.00 0.00 0.00 3.86
527 551 6.287589 AGTCGTTGATTTCTTCTATGGAGT 57.712 37.500 0.00 0.00 0.00 3.85
528 552 6.102663 AGTCGTTGATTTCTTCTATGGAGTG 58.897 40.000 0.00 0.00 0.00 3.51
529 553 6.071334 AGTCGTTGATTTCTTCTATGGAGTGA 60.071 38.462 0.00 0.00 0.00 3.41
530 554 6.590292 GTCGTTGATTTCTTCTATGGAGTGAA 59.410 38.462 0.00 0.00 0.00 3.18
531 555 7.278868 GTCGTTGATTTCTTCTATGGAGTGAAT 59.721 37.037 0.00 0.00 0.00 2.57
532 556 7.492669 TCGTTGATTTCTTCTATGGAGTGAATC 59.507 37.037 0.00 0.00 0.00 2.52
546 570 6.097915 GGAGTGAATCCCTATCGTTTATCA 57.902 41.667 0.00 0.00 43.01 2.15
547 571 6.702329 GGAGTGAATCCCTATCGTTTATCAT 58.298 40.000 0.00 0.00 43.01 2.45
548 572 7.837863 GGAGTGAATCCCTATCGTTTATCATA 58.162 38.462 0.00 0.00 43.01 2.15
549 573 7.976734 GGAGTGAATCCCTATCGTTTATCATAG 59.023 40.741 0.00 0.00 43.01 2.23
550 574 7.324178 AGTGAATCCCTATCGTTTATCATAGC 58.676 38.462 0.00 0.00 0.00 2.97
551 575 7.039011 AGTGAATCCCTATCGTTTATCATAGCA 60.039 37.037 0.00 0.00 0.00 3.49
552 576 7.602644 GTGAATCCCTATCGTTTATCATAGCAA 59.397 37.037 0.00 0.00 0.00 3.91
553 577 8.154203 TGAATCCCTATCGTTTATCATAGCAAA 58.846 33.333 0.00 0.00 0.00 3.68
554 578 7.907214 ATCCCTATCGTTTATCATAGCAAAC 57.093 36.000 0.00 0.00 0.00 2.93
555 579 7.062749 TCCCTATCGTTTATCATAGCAAACT 57.937 36.000 0.00 0.00 33.43 2.66
556 580 7.152645 TCCCTATCGTTTATCATAGCAAACTC 58.847 38.462 0.00 0.00 33.43 3.01
557 581 6.089551 CCCTATCGTTTATCATAGCAAACTCG 59.910 42.308 0.00 0.00 33.43 4.18
558 582 5.907197 ATCGTTTATCATAGCAAACTCGG 57.093 39.130 0.00 0.00 33.43 4.63
559 583 5.001237 TCGTTTATCATAGCAAACTCGGA 57.999 39.130 0.00 0.00 33.43 4.55
560 584 5.597806 TCGTTTATCATAGCAAACTCGGAT 58.402 37.500 0.00 0.00 33.43 4.18
561 585 5.462068 TCGTTTATCATAGCAAACTCGGATG 59.538 40.000 0.00 0.00 33.43 3.51
562 586 5.462068 CGTTTATCATAGCAAACTCGGATGA 59.538 40.000 0.00 0.00 33.43 2.92
563 587 6.146184 CGTTTATCATAGCAAACTCGGATGAT 59.854 38.462 0.00 0.00 39.80 2.45
564 588 7.513968 GTTTATCATAGCAAACTCGGATGATC 58.486 38.462 0.00 0.00 38.08 2.92
565 589 3.995199 TCATAGCAAACTCGGATGATCC 58.005 45.455 0.08 0.08 0.00 3.36
574 598 3.620785 GGATGATCCGGCGGCTCT 61.621 66.667 27.66 14.92 0.00 4.09
575 599 2.276116 GGATGATCCGGCGGCTCTA 61.276 63.158 27.66 15.91 0.00 2.43
576 600 1.214062 GATGATCCGGCGGCTCTAG 59.786 63.158 27.66 1.58 0.00 2.43
577 601 1.528292 GATGATCCGGCGGCTCTAGT 61.528 60.000 27.66 15.23 0.00 2.57
578 602 1.115930 ATGATCCGGCGGCTCTAGTT 61.116 55.000 27.66 9.71 0.00 2.24
579 603 0.466739 TGATCCGGCGGCTCTAGTTA 60.467 55.000 27.66 6.98 0.00 2.24
580 604 0.889306 GATCCGGCGGCTCTAGTTAT 59.111 55.000 23.83 6.63 0.00 1.89
581 605 0.889306 ATCCGGCGGCTCTAGTTATC 59.111 55.000 23.83 0.00 0.00 1.75
582 606 1.081376 CCGGCGGCTCTAGTTATCG 60.081 63.158 15.42 0.00 0.00 2.92
583 607 1.081376 CGGCGGCTCTAGTTATCGG 60.081 63.158 7.61 0.00 0.00 4.18
584 608 1.289380 GGCGGCTCTAGTTATCGGG 59.711 63.158 0.00 0.00 0.00 5.14
585 609 1.177256 GGCGGCTCTAGTTATCGGGA 61.177 60.000 0.00 0.00 0.00 5.14
586 610 0.889306 GCGGCTCTAGTTATCGGGAT 59.111 55.000 0.00 0.00 0.00 3.85
587 611 1.272769 GCGGCTCTAGTTATCGGGATT 59.727 52.381 0.00 0.00 0.00 3.01
588 612 2.671632 GCGGCTCTAGTTATCGGGATTC 60.672 54.545 0.00 0.00 0.00 2.52
589 613 2.414293 CGGCTCTAGTTATCGGGATTCG 60.414 54.545 0.00 0.00 40.90 3.34
590 614 2.597520 GCTCTAGTTATCGGGATTCGC 58.402 52.381 0.00 0.00 39.05 4.70
591 615 2.229302 GCTCTAGTTATCGGGATTCGCT 59.771 50.000 0.00 0.00 39.05 4.93
592 616 3.671164 GCTCTAGTTATCGGGATTCGCTC 60.671 52.174 0.00 0.00 39.05 5.03
593 617 2.818432 TCTAGTTATCGGGATTCGCTCC 59.182 50.000 0.00 0.00 44.11 4.70
594 618 1.410004 AGTTATCGGGATTCGCTCCA 58.590 50.000 6.25 0.00 46.98 3.86
595 619 1.971357 AGTTATCGGGATTCGCTCCAT 59.029 47.619 6.25 0.00 46.98 3.41
596 620 2.028930 AGTTATCGGGATTCGCTCCATC 60.029 50.000 6.25 0.00 46.98 3.51
597 621 0.895530 TATCGGGATTCGCTCCATCC 59.104 55.000 6.25 1.18 46.98 3.51
598 622 1.121407 ATCGGGATTCGCTCCATCCA 61.121 55.000 6.25 0.00 46.98 3.41
599 623 1.301244 CGGGATTCGCTCCATCCAG 60.301 63.158 6.25 1.04 46.98 3.86
600 624 1.748329 CGGGATTCGCTCCATCCAGA 61.748 60.000 6.25 0.00 46.98 3.86
601 625 0.250081 GGGATTCGCTCCATCCAGAC 60.250 60.000 6.25 0.00 46.98 3.51
602 626 0.598680 GGATTCGCTCCATCCAGACG 60.599 60.000 0.00 0.00 44.26 4.18
603 627 1.218230 GATTCGCTCCATCCAGACGC 61.218 60.000 0.00 0.00 0.00 5.19
604 628 2.960957 ATTCGCTCCATCCAGACGCG 62.961 60.000 3.53 3.53 44.63 6.01
614 638 4.306471 CAGACGCGCGCCAAAACA 62.306 61.111 32.58 0.00 0.00 2.83
615 639 3.578272 AGACGCGCGCCAAAACAA 61.578 55.556 32.58 0.00 0.00 2.83
616 640 3.091022 GACGCGCGCCAAAACAAG 61.091 61.111 32.58 11.44 0.00 3.16
617 641 3.800323 GACGCGCGCCAAAACAAGT 62.800 57.895 32.58 15.07 0.00 3.16
618 642 2.653766 CGCGCGCCAAAACAAGTT 60.654 55.556 27.72 0.00 0.00 2.66
619 643 2.915458 CGCGCGCCAAAACAAGTTG 61.915 57.895 27.72 0.00 0.00 3.16
631 655 6.983474 CAAAACAAGTTGGATGGAACTTTT 57.017 33.333 7.96 0.00 42.33 2.27
632 656 7.003939 CAAAACAAGTTGGATGGAACTTTTC 57.996 36.000 7.96 0.00 42.33 2.29
633 657 6.544928 AAACAAGTTGGATGGAACTTTTCT 57.455 33.333 7.96 0.00 42.33 2.52
634 658 5.520376 ACAAGTTGGATGGAACTTTTCTG 57.480 39.130 7.96 0.00 42.33 3.02
635 659 4.342092 ACAAGTTGGATGGAACTTTTCTGG 59.658 41.667 7.96 0.00 42.33 3.86
636 660 4.453480 AGTTGGATGGAACTTTTCTGGA 57.547 40.909 0.00 0.00 31.92 3.86
637 661 4.803452 AGTTGGATGGAACTTTTCTGGAA 58.197 39.130 0.00 0.00 31.92 3.53
638 662 4.584743 AGTTGGATGGAACTTTTCTGGAAC 59.415 41.667 0.00 0.00 31.92 3.62
639 663 3.496331 TGGATGGAACTTTTCTGGAACC 58.504 45.455 0.00 0.00 0.00 3.62
640 664 3.117322 TGGATGGAACTTTTCTGGAACCA 60.117 43.478 0.00 0.00 0.00 3.67
641 665 4.089361 GGATGGAACTTTTCTGGAACCAT 58.911 43.478 0.00 0.00 39.00 3.55
642 666 4.158579 GGATGGAACTTTTCTGGAACCATC 59.841 45.833 15.55 15.55 46.33 3.51
643 667 3.146066 TGGAACTTTTCTGGAACCATCG 58.854 45.455 0.00 0.00 0.00 3.84
644 668 2.488153 GGAACTTTTCTGGAACCATCGG 59.512 50.000 0.00 0.00 0.00 4.18
645 669 2.200373 ACTTTTCTGGAACCATCGGG 57.800 50.000 0.00 0.00 41.29 5.14
646 670 1.702957 ACTTTTCTGGAACCATCGGGA 59.297 47.619 0.00 0.00 38.05 5.14
647 671 2.308866 ACTTTTCTGGAACCATCGGGAT 59.691 45.455 0.00 0.00 38.05 3.85
648 672 3.521937 ACTTTTCTGGAACCATCGGGATA 59.478 43.478 0.00 0.00 38.05 2.59
649 673 3.838244 TTTCTGGAACCATCGGGATAG 57.162 47.619 0.00 0.00 38.05 2.08
650 674 2.471815 TCTGGAACCATCGGGATAGT 57.528 50.000 0.00 0.00 38.05 2.12
651 675 2.039418 TCTGGAACCATCGGGATAGTG 58.961 52.381 0.00 0.00 38.05 2.74
652 676 0.468226 TGGAACCATCGGGATAGTGC 59.532 55.000 0.00 0.00 38.05 4.40
653 677 0.468226 GGAACCATCGGGATAGTGCA 59.532 55.000 0.00 0.00 38.05 4.57
654 678 1.583054 GAACCATCGGGATAGTGCAC 58.417 55.000 9.40 9.40 38.05 4.57
655 679 0.179084 AACCATCGGGATAGTGCACG 60.179 55.000 12.01 0.00 38.05 5.34
656 680 1.327690 ACCATCGGGATAGTGCACGT 61.328 55.000 12.01 4.09 38.05 4.49
657 681 0.875908 CCATCGGGATAGTGCACGTG 60.876 60.000 12.28 12.28 35.59 4.49
658 682 1.227263 ATCGGGATAGTGCACGTGC 60.227 57.895 33.11 33.11 42.50 5.34
659 683 2.644555 ATCGGGATAGTGCACGTGCC 62.645 60.000 35.72 26.08 41.18 5.01
660 684 2.584608 GGGATAGTGCACGTGCCT 59.415 61.111 35.72 30.68 41.18 4.75
661 685 1.521681 GGGATAGTGCACGTGCCTC 60.522 63.158 35.72 27.13 41.18 4.70
662 686 1.521681 GGATAGTGCACGTGCCTCC 60.522 63.158 35.72 28.69 41.18 4.30
663 687 1.517832 GATAGTGCACGTGCCTCCT 59.482 57.895 35.72 28.17 41.18 3.69
664 688 0.744874 GATAGTGCACGTGCCTCCTA 59.255 55.000 35.72 29.20 41.18 2.94
665 689 0.460311 ATAGTGCACGTGCCTCCTAC 59.540 55.000 35.72 26.05 41.18 3.18
666 690 0.611062 TAGTGCACGTGCCTCCTACT 60.611 55.000 35.72 30.74 41.18 2.57
667 691 0.611062 AGTGCACGTGCCTCCTACTA 60.611 55.000 35.72 13.53 41.18 1.82
668 692 0.179134 GTGCACGTGCCTCCTACTAG 60.179 60.000 35.72 0.00 41.18 2.57
669 693 0.611062 TGCACGTGCCTCCTACTAGT 60.611 55.000 35.72 0.00 41.18 2.57
670 694 1.340308 TGCACGTGCCTCCTACTAGTA 60.340 52.381 35.72 11.40 41.18 1.82
671 695 1.334243 GCACGTGCCTCCTACTAGTAG 59.666 57.143 30.12 21.11 34.31 2.57
695 719 7.378181 AGCCAAAGTACATTCATTTAAACCAG 58.622 34.615 0.00 0.00 0.00 4.00
702 726 9.077885 AGTACATTCATTTAAACCAGAACATGT 57.922 29.630 0.00 0.00 0.00 3.21
731 755 5.175859 TCGAATTGTCTTCATACTGGAACC 58.824 41.667 0.00 0.00 0.00 3.62
779 803 5.470777 CAGGGAAAACCAAACTACAACGATA 59.529 40.000 0.00 0.00 43.89 2.92
783 807 7.550196 GGGAAAACCAAACTACAACGATATAGA 59.450 37.037 0.00 0.00 39.85 1.98
816 840 1.602920 GCCAACTTAGTTTGCTGCCAC 60.603 52.381 13.00 0.00 32.52 5.01
856 881 2.869233 TTTTGCTTCCACTCACTTGC 57.131 45.000 0.00 0.00 0.00 4.01
904 929 5.923684 TCGTTTATTTGCTCAAATTTGGTCC 59.076 36.000 17.90 7.38 40.99 4.46
914 939 5.050159 GCTCAAATTTGGTCCACACAATTTC 60.050 40.000 17.90 0.00 32.53 2.17
915 940 5.363939 TCAAATTTGGTCCACACAATTTCC 58.636 37.500 17.90 0.00 32.53 3.13
920 945 5.428184 TTGGTCCACACAATTTCCTTTTT 57.572 34.783 0.00 0.00 0.00 1.94
975 1000 4.744795 ACCTCTCTCATACCACAATGAC 57.255 45.455 0.00 0.00 32.51 3.06
1029 1092 2.365617 TCTTCAGAGTTCAGAACGCCTT 59.634 45.455 12.96 0.00 36.23 4.35
1030 1093 2.910688 TCAGAGTTCAGAACGCCTTT 57.089 45.000 12.96 0.00 36.23 3.11
1031 1094 3.194005 TCAGAGTTCAGAACGCCTTTT 57.806 42.857 12.96 0.00 36.23 2.27
1032 1095 3.541632 TCAGAGTTCAGAACGCCTTTTT 58.458 40.909 12.96 0.00 36.23 1.94
1057 1120 6.910536 TCTTTGAGACAAAGAGTTCAGAAC 57.089 37.500 18.76 5.00 32.90 3.01
1058 1121 5.520288 TCTTTGAGACAAAGAGTTCAGAACG 59.480 40.000 18.76 0.00 36.23 3.95
1059 1122 3.123804 TGAGACAAAGAGTTCAGAACGC 58.876 45.455 8.90 8.90 36.23 4.84
1060 1123 2.476997 GAGACAAAGAGTTCAGAACGCC 59.523 50.000 12.96 6.97 36.23 5.68
1061 1124 2.103263 AGACAAAGAGTTCAGAACGCCT 59.897 45.455 12.96 9.01 36.23 5.52
1062 1125 3.321111 AGACAAAGAGTTCAGAACGCCTA 59.679 43.478 12.96 0.00 36.23 3.93
1063 1126 4.056050 GACAAAGAGTTCAGAACGCCTAA 58.944 43.478 12.96 0.00 36.23 2.69
1064 1127 4.058817 ACAAAGAGTTCAGAACGCCTAAG 58.941 43.478 12.96 9.83 36.23 2.18
1065 1128 2.371910 AGAGTTCAGAACGCCTAAGC 57.628 50.000 12.96 0.00 36.23 3.09
1066 1129 1.066787 AGAGTTCAGAACGCCTAAGCC 60.067 52.381 12.96 0.00 36.23 4.35
1067 1130 0.036294 AGTTCAGAACGCCTAAGCCC 60.036 55.000 7.68 0.00 36.23 5.19
1068 1131 1.025113 GTTCAGAACGCCTAAGCCCC 61.025 60.000 0.00 0.00 34.57 5.80
1074 1137 0.893727 AACGCCTAAGCCCCAAACAG 60.894 55.000 0.00 0.00 34.57 3.16
1142 1212 2.673687 CGCCCCAAAACCGCCTAA 60.674 61.111 0.00 0.00 0.00 2.69
1326 1399 2.125350 GCCGAGCTCCTCCACAAG 60.125 66.667 8.47 0.00 0.00 3.16
1377 1450 0.335361 TCCACCTCTACACCCTCTCC 59.665 60.000 0.00 0.00 0.00 3.71
1602 1811 2.036098 TCCGTGTTCCGCTCCCTA 59.964 61.111 0.00 0.00 34.38 3.53
1604 1813 2.642254 CCGTGTTCCGCTCCCTACA 61.642 63.158 0.00 0.00 34.38 2.74
1606 1815 0.806102 CGTGTTCCGCTCCCTACATG 60.806 60.000 0.00 0.00 0.00 3.21
1607 1816 1.090052 GTGTTCCGCTCCCTACATGC 61.090 60.000 0.00 0.00 0.00 4.06
1644 1853 2.379972 CCCGATGACTACTCCTTCACT 58.620 52.381 0.00 0.00 0.00 3.41
2070 2279 0.450583 TTACTAGCGTCCTGAGTGCG 59.549 55.000 0.00 0.00 0.00 5.34
2175 2384 4.558496 GCAGCTTTACCTGTTAACAATGCA 60.558 41.667 10.03 0.00 35.28 3.96
2373 2582 2.705658 GTGGATGGTGATGGTATCAGGA 59.294 50.000 0.00 0.00 40.53 3.86
2510 2719 1.322538 GGGGCGTTGAAGCATGGAAT 61.323 55.000 0.00 0.00 39.27 3.01
3237 3635 1.606668 GACACAAAACATCCGGAAGCA 59.393 47.619 9.01 0.00 0.00 3.91
3265 3663 7.279615 TGAAGTCTACAAGTTCCTTGAAATGA 58.720 34.615 10.73 1.37 43.42 2.57
3331 3729 3.301794 TTGTCCTGCAAGATATGGCAT 57.698 42.857 4.88 4.88 39.65 4.40
3366 3841 5.957796 GGAATACGTATTATTTGCGCATAGC 59.042 40.000 20.37 3.85 37.12 2.97
3423 3898 1.673033 CCTCTTGGAGCCACAGTTACG 60.673 57.143 0.00 0.00 34.57 3.18
3578 4053 6.879993 TGTGGTAATTATTGGTGAATGTACGT 59.120 34.615 0.00 0.00 0.00 3.57
3620 4096 0.681243 GACCTTCCAACAGATGCCCC 60.681 60.000 0.00 0.00 0.00 5.80
3628 4104 2.009774 CAACAGATGCCCCTTAAGTCG 58.990 52.381 0.97 0.00 0.00 4.18
3682 4160 3.243771 GGATCATGTCTGGTACCGGTTAG 60.244 52.174 15.04 9.77 0.00 2.34
3738 4216 7.209475 GGTGGACAATTTTTGAATGAGAGAAA 58.791 34.615 0.00 0.00 0.00 2.52
3781 4259 4.458295 ACTCTTCGGTTCGTCTAAGATTCA 59.542 41.667 0.00 0.00 0.00 2.57
3795 4273 0.323451 GATTCAAACCCCCGGCTCTT 60.323 55.000 0.00 0.00 0.00 2.85
3931 4409 9.807649 GCAATATTGGACTGATCTTTTGTTTAT 57.192 29.630 17.02 0.00 0.00 1.40
3997 4496 8.348285 TCAGCTTTATTTTACCAGCTATGTTT 57.652 30.769 0.00 0.00 40.75 2.83
4060 4559 2.417787 GGACCAATTCAGATTTGCTGGC 60.418 50.000 0.15 0.00 44.98 4.85
4061 4560 1.551883 ACCAATTCAGATTTGCTGGCC 59.448 47.619 0.00 0.00 44.98 5.36
4062 4561 1.470285 CCAATTCAGATTTGCTGGCCG 60.470 52.381 0.00 0.00 44.98 6.13
4063 4562 1.473677 CAATTCAGATTTGCTGGCCGA 59.526 47.619 0.00 0.00 44.98 5.54
4064 4563 1.838112 ATTCAGATTTGCTGGCCGAA 58.162 45.000 0.00 0.00 44.98 4.30
4065 4564 1.167851 TTCAGATTTGCTGGCCGAAG 58.832 50.000 0.00 0.00 44.98 3.79
4066 4565 0.324614 TCAGATTTGCTGGCCGAAGA 59.675 50.000 0.00 0.00 44.98 2.87
4067 4566 1.167851 CAGATTTGCTGGCCGAAGAA 58.832 50.000 0.00 0.00 41.07 2.52
4068 4567 1.747355 CAGATTTGCTGGCCGAAGAAT 59.253 47.619 0.00 0.00 41.07 2.40
4069 4568 2.165030 CAGATTTGCTGGCCGAAGAATT 59.835 45.455 0.00 0.00 41.07 2.17
4070 4569 2.424956 AGATTTGCTGGCCGAAGAATTC 59.575 45.455 0.00 0.00 43.09 2.17
4071 4570 0.887933 TTTGCTGGCCGAAGAATTCC 59.112 50.000 0.65 0.00 43.81 3.01
4072 4571 0.965363 TTGCTGGCCGAAGAATTCCC 60.965 55.000 0.65 0.00 43.81 3.97
4158 4678 2.240667 AGATGGGTGTGCTAATTCTGCT 59.759 45.455 5.21 0.00 0.00 4.24
4175 4695 3.643320 TCTGCTACAGATATTGGGGTCAG 59.357 47.826 0.00 0.00 35.39 3.51
4180 4700 3.454858 ACAGATATTGGGGTCAGAGTGT 58.545 45.455 0.00 0.00 0.00 3.55
4244 4764 3.564511 CAATCCAGTTTGTTAAGGCACG 58.435 45.455 0.00 0.00 0.00 5.34
4256 4776 1.523758 AAGGCACGGTAGCTTTCTTG 58.476 50.000 0.00 0.00 34.17 3.02
4257 4777 0.685097 AGGCACGGTAGCTTTCTTGA 59.315 50.000 0.00 0.00 34.17 3.02
4258 4778 1.279271 AGGCACGGTAGCTTTCTTGAT 59.721 47.619 0.00 0.00 34.17 2.57
4259 4779 1.666189 GGCACGGTAGCTTTCTTGATC 59.334 52.381 0.00 0.00 34.17 2.92
4260 4780 1.666189 GCACGGTAGCTTTCTTGATCC 59.334 52.381 0.00 0.00 0.00 3.36
4261 4781 2.678190 GCACGGTAGCTTTCTTGATCCT 60.678 50.000 0.00 0.00 0.00 3.24
4262 4782 2.932614 CACGGTAGCTTTCTTGATCCTG 59.067 50.000 0.00 0.00 0.00 3.86
4263 4783 2.567615 ACGGTAGCTTTCTTGATCCTGT 59.432 45.455 0.00 0.00 0.00 4.00
4264 4784 2.932614 CGGTAGCTTTCTTGATCCTGTG 59.067 50.000 0.00 0.00 0.00 3.66
4265 4785 3.368427 CGGTAGCTTTCTTGATCCTGTGA 60.368 47.826 0.00 0.00 0.00 3.58
4266 4786 4.681781 CGGTAGCTTTCTTGATCCTGTGAT 60.682 45.833 0.00 0.00 0.00 3.06
4267 4787 5.451937 CGGTAGCTTTCTTGATCCTGTGATA 60.452 44.000 0.00 0.00 0.00 2.15
4268 4788 5.755861 GGTAGCTTTCTTGATCCTGTGATAC 59.244 44.000 0.00 0.00 0.00 2.24
4269 4789 5.426689 AGCTTTCTTGATCCTGTGATACA 57.573 39.130 0.00 0.00 0.00 2.29
4270 4790 5.426504 AGCTTTCTTGATCCTGTGATACAG 58.573 41.667 2.05 2.05 45.53 2.74
4288 4808 9.893305 GTGATACAGGTTATTGTAAAATATGCC 57.107 33.333 0.00 0.00 37.13 4.40
4289 4809 9.860650 TGATACAGGTTATTGTAAAATATGCCT 57.139 29.630 4.34 4.34 37.13 4.75
4292 4812 7.703328 ACAGGTTATTGTAAAATATGCCTTCG 58.297 34.615 6.57 1.92 0.00 3.79
4293 4813 7.138736 CAGGTTATTGTAAAATATGCCTTCGG 58.861 38.462 6.57 0.00 0.00 4.30
4294 4814 6.831868 AGGTTATTGTAAAATATGCCTTCGGT 59.168 34.615 4.34 0.00 0.00 4.69
4295 4815 7.994334 AGGTTATTGTAAAATATGCCTTCGGTA 59.006 33.333 4.34 0.00 0.00 4.02
4296 4816 8.623030 GGTTATTGTAAAATATGCCTTCGGTAA 58.377 33.333 0.00 0.00 0.00 2.85
4300 4820 9.744468 ATTGTAAAATATGCCTTCGGTAATTTC 57.256 29.630 0.00 0.00 0.00 2.17
4301 4821 8.514330 TGTAAAATATGCCTTCGGTAATTTCT 57.486 30.769 0.00 0.00 0.00 2.52
4302 4822 8.402472 TGTAAAATATGCCTTCGGTAATTTCTG 58.598 33.333 0.00 0.00 0.00 3.02
4303 4823 7.404671 AAAATATGCCTTCGGTAATTTCTGT 57.595 32.000 0.00 0.00 0.00 3.41
4304 4824 6.377327 AATATGCCTTCGGTAATTTCTGTG 57.623 37.500 0.00 0.00 0.00 3.66
4305 4825 3.134574 TGCCTTCGGTAATTTCTGTGT 57.865 42.857 0.00 0.00 0.00 3.72
4306 4826 4.274602 TGCCTTCGGTAATTTCTGTGTA 57.725 40.909 0.00 0.00 0.00 2.90
4307 4827 4.643463 TGCCTTCGGTAATTTCTGTGTAA 58.357 39.130 0.00 0.00 0.00 2.41
4308 4828 5.064558 TGCCTTCGGTAATTTCTGTGTAAA 58.935 37.500 0.00 0.00 0.00 2.01
4309 4829 5.708230 TGCCTTCGGTAATTTCTGTGTAAAT 59.292 36.000 0.00 0.00 0.00 1.40
4310 4830 6.879993 TGCCTTCGGTAATTTCTGTGTAAATA 59.120 34.615 0.00 0.00 0.00 1.40
4311 4831 7.065324 TGCCTTCGGTAATTTCTGTGTAAATAG 59.935 37.037 0.00 0.00 0.00 1.73
4312 4832 7.407337 CCTTCGGTAATTTCTGTGTAAATAGC 58.593 38.462 0.00 0.00 0.00 2.97
4313 4833 7.065324 CCTTCGGTAATTTCTGTGTAAATAGCA 59.935 37.037 0.00 0.00 0.00 3.49
4314 4834 8.500753 TTCGGTAATTTCTGTGTAAATAGCAT 57.499 30.769 0.00 0.00 0.00 3.79
4315 4835 7.915508 TCGGTAATTTCTGTGTAAATAGCATG 58.084 34.615 0.00 0.00 0.00 4.06
4316 4836 7.011950 TCGGTAATTTCTGTGTAAATAGCATGG 59.988 37.037 0.00 0.00 0.00 3.66
4317 4837 7.201696 CGGTAATTTCTGTGTAAATAGCATGGT 60.202 37.037 1.62 1.62 0.00 3.55
4318 4838 9.116067 GGTAATTTCTGTGTAAATAGCATGGTA 57.884 33.333 7.15 7.15 0.00 3.25
4325 4845 9.634163 TCTGTGTAAATAGCATGGTAATATACG 57.366 33.333 8.98 9.71 0.00 3.06
4326 4846 8.246908 TGTGTAAATAGCATGGTAATATACGC 57.753 34.615 20.31 20.31 0.00 4.42
4327 4847 7.873505 TGTGTAAATAGCATGGTAATATACGCA 59.126 33.333 23.13 23.13 0.00 5.24
4328 4848 8.380644 GTGTAAATAGCATGGTAATATACGCAG 58.619 37.037 21.26 0.00 0.00 5.18
4329 4849 6.422776 AAATAGCATGGTAATATACGCAGC 57.577 37.500 8.98 0.00 0.00 5.25
4330 4850 2.337583 AGCATGGTAATATACGCAGCG 58.662 47.619 14.82 14.82 0.00 5.18
4331 4851 2.066262 GCATGGTAATATACGCAGCGT 58.934 47.619 26.25 26.25 44.35 5.07
4332 4852 3.057104 AGCATGGTAATATACGCAGCGTA 60.057 43.478 28.96 28.96 46.28 4.42
4333 4853 3.303495 GCATGGTAATATACGCAGCGTAG 59.697 47.826 30.00 15.53 45.45 3.51
4334 4854 4.729595 CATGGTAATATACGCAGCGTAGA 58.270 43.478 30.00 26.90 45.45 2.59
4335 4855 4.414999 TGGTAATATACGCAGCGTAGAG 57.585 45.455 30.00 0.00 45.45 2.43
4336 4856 3.169733 GGTAATATACGCAGCGTAGAGC 58.830 50.000 30.00 20.15 45.45 4.09
4352 4872 6.957150 GCGTAGAGCTGATAACTTACTTAGA 58.043 40.000 0.00 0.00 44.04 2.10
4353 4873 6.852345 GCGTAGAGCTGATAACTTACTTAGAC 59.148 42.308 0.00 0.00 44.04 2.59
4354 4874 7.064674 CGTAGAGCTGATAACTTACTTAGACG 58.935 42.308 0.00 0.00 0.00 4.18
4355 4875 7.042858 CGTAGAGCTGATAACTTACTTAGACGA 60.043 40.741 0.00 0.00 0.00 4.20
4356 4876 7.627298 AGAGCTGATAACTTACTTAGACGAA 57.373 36.000 0.00 0.00 0.00 3.85
4357 4877 8.053026 AGAGCTGATAACTTACTTAGACGAAA 57.947 34.615 0.00 0.00 0.00 3.46
4358 4878 7.969508 AGAGCTGATAACTTACTTAGACGAAAC 59.030 37.037 0.00 0.00 0.00 2.78
4359 4879 7.600065 AGCTGATAACTTACTTAGACGAAACA 58.400 34.615 0.00 0.00 0.00 2.83
4360 4880 8.251721 AGCTGATAACTTACTTAGACGAAACAT 58.748 33.333 0.00 0.00 0.00 2.71
4361 4881 8.321716 GCTGATAACTTACTTAGACGAAACATG 58.678 37.037 0.00 0.00 0.00 3.21
4362 4882 8.697846 TGATAACTTACTTAGACGAAACATGG 57.302 34.615 0.00 0.00 0.00 3.66
4363 4883 8.308931 TGATAACTTACTTAGACGAAACATGGT 58.691 33.333 0.00 0.00 0.00 3.55
4364 4884 9.793252 GATAACTTACTTAGACGAAACATGGTA 57.207 33.333 0.00 0.00 0.00 3.25
4366 4886 7.880059 ACTTACTTAGACGAAACATGGTAAC 57.120 36.000 0.00 0.00 0.00 2.50
4367 4887 7.664758 ACTTACTTAGACGAAACATGGTAACT 58.335 34.615 0.00 0.00 37.61 2.24
4368 4888 8.146412 ACTTACTTAGACGAAACATGGTAACTT 58.854 33.333 0.00 0.00 37.61 2.66
4369 4889 8.891671 TTACTTAGACGAAACATGGTAACTTT 57.108 30.769 0.00 0.00 37.61 2.66
4370 4890 7.797038 ACTTAGACGAAACATGGTAACTTTT 57.203 32.000 0.00 0.00 37.61 2.27
4371 4891 7.636326 ACTTAGACGAAACATGGTAACTTTTG 58.364 34.615 0.00 0.00 37.61 2.44
4372 4892 7.496591 ACTTAGACGAAACATGGTAACTTTTGA 59.503 33.333 0.00 0.00 37.61 2.69
4373 4893 6.300354 AGACGAAACATGGTAACTTTTGAG 57.700 37.500 0.00 0.00 37.61 3.02
4374 4894 4.855531 ACGAAACATGGTAACTTTTGAGC 58.144 39.130 0.00 0.00 37.61 4.26
4375 4895 4.226761 CGAAACATGGTAACTTTTGAGCC 58.773 43.478 0.00 0.00 37.61 4.70
4376 4896 3.915437 AACATGGTAACTTTTGAGCCG 57.085 42.857 0.00 0.00 37.61 5.52
4377 4897 2.159382 ACATGGTAACTTTTGAGCCGG 58.841 47.619 0.00 0.00 37.61 6.13
4378 4898 2.224670 ACATGGTAACTTTTGAGCCGGA 60.225 45.455 5.05 0.00 37.61 5.14
4379 4899 2.178912 TGGTAACTTTTGAGCCGGAG 57.821 50.000 5.05 0.00 37.61 4.63
4380 4900 1.695242 TGGTAACTTTTGAGCCGGAGA 59.305 47.619 5.05 0.00 37.61 3.71
4381 4901 2.304761 TGGTAACTTTTGAGCCGGAGAT 59.695 45.455 5.05 0.00 37.61 2.75
4382 4902 3.244770 TGGTAACTTTTGAGCCGGAGATT 60.245 43.478 5.05 0.00 37.61 2.40
4383 4903 3.756963 GGTAACTTTTGAGCCGGAGATTT 59.243 43.478 5.05 0.00 0.00 2.17
4384 4904 4.217767 GGTAACTTTTGAGCCGGAGATTTT 59.782 41.667 5.05 0.00 0.00 1.82
4385 4905 4.937201 AACTTTTGAGCCGGAGATTTTT 57.063 36.364 5.05 0.00 0.00 1.94
4407 4927 2.721425 TTTTGAGAAACACCTCCGGT 57.279 45.000 0.00 0.00 35.62 5.28
4408 4928 3.842007 TTTTGAGAAACACCTCCGGTA 57.158 42.857 0.00 0.00 32.11 4.02
4409 4929 3.842007 TTTGAGAAACACCTCCGGTAA 57.158 42.857 0.00 0.00 32.11 2.85
4410 4930 2.825861 TGAGAAACACCTCCGGTAAC 57.174 50.000 0.00 0.00 32.11 2.50
4411 4931 2.322658 TGAGAAACACCTCCGGTAACT 58.677 47.619 0.00 0.00 32.11 2.24
4412 4932 2.298163 TGAGAAACACCTCCGGTAACTC 59.702 50.000 0.00 1.74 32.11 3.01
4413 4933 2.298163 GAGAAACACCTCCGGTAACTCA 59.702 50.000 0.00 0.00 32.11 3.41
4414 4934 2.904434 AGAAACACCTCCGGTAACTCAT 59.096 45.455 0.00 0.00 32.11 2.90
4415 4935 2.762535 AACACCTCCGGTAACTCATG 57.237 50.000 0.00 0.00 32.11 3.07
4416 4936 1.640917 ACACCTCCGGTAACTCATGT 58.359 50.000 0.00 0.00 32.11 3.21
4417 4937 2.811410 ACACCTCCGGTAACTCATGTA 58.189 47.619 0.00 0.00 32.11 2.29
4418 4938 3.371965 ACACCTCCGGTAACTCATGTAT 58.628 45.455 0.00 0.00 32.11 2.29
4419 4939 4.539726 ACACCTCCGGTAACTCATGTATA 58.460 43.478 0.00 0.00 32.11 1.47
4420 4940 4.957954 ACACCTCCGGTAACTCATGTATAA 59.042 41.667 0.00 0.00 32.11 0.98
4421 4941 5.422970 ACACCTCCGGTAACTCATGTATAAA 59.577 40.000 0.00 0.00 32.11 1.40
4422 4942 6.099269 ACACCTCCGGTAACTCATGTATAAAT 59.901 38.462 0.00 0.00 32.11 1.40
4423 4943 7.288389 ACACCTCCGGTAACTCATGTATAAATA 59.712 37.037 0.00 0.00 32.11 1.40
4424 4944 8.145767 CACCTCCGGTAACTCATGTATAAATAA 58.854 37.037 0.00 0.00 32.11 1.40
4425 4945 8.146412 ACCTCCGGTAACTCATGTATAAATAAC 58.854 37.037 0.00 0.00 32.11 1.89
4426 4946 8.365647 CCTCCGGTAACTCATGTATAAATAACT 58.634 37.037 0.00 0.00 0.00 2.24
4427 4947 9.760077 CTCCGGTAACTCATGTATAAATAACTT 57.240 33.333 0.00 0.00 0.00 2.66
4428 4948 9.537192 TCCGGTAACTCATGTATAAATAACTTG 57.463 33.333 0.00 0.00 0.00 3.16
4429 4949 8.770828 CCGGTAACTCATGTATAAATAACTTGG 58.229 37.037 0.00 0.00 0.00 3.61
4430 4950 9.321562 CGGTAACTCATGTATAAATAACTTGGT 57.678 33.333 0.00 0.00 0.00 3.67
4449 4969 8.930846 ACTTGGTATATACGTACAATAGACCT 57.069 34.615 20.98 6.87 40.37 3.85
4450 4970 8.790718 ACTTGGTATATACGTACAATAGACCTG 58.209 37.037 20.98 17.21 40.37 4.00
4451 4971 8.922931 TTGGTATATACGTACAATAGACCTGA 57.077 34.615 20.98 12.24 40.37 3.86
4452 4972 9.524496 TTGGTATATACGTACAATAGACCTGAT 57.476 33.333 20.98 0.00 40.37 2.90
4465 4985 9.780186 ACAATAGACCTGATAACTTATTTAGCC 57.220 33.333 0.00 0.00 0.00 3.93
4470 4990 8.862085 AGACCTGATAACTTATTTAGCCTAGAC 58.138 37.037 0.00 0.00 0.00 2.59
4471 4991 7.659186 ACCTGATAACTTATTTAGCCTAGACG 58.341 38.462 0.00 0.00 0.00 4.18
4472 4992 7.287235 ACCTGATAACTTATTTAGCCTAGACGT 59.713 37.037 0.00 0.00 0.00 4.34
4473 4993 7.595502 CCTGATAACTTATTTAGCCTAGACGTG 59.404 40.741 0.00 0.00 0.00 4.49
4474 4994 8.229253 TGATAACTTATTTAGCCTAGACGTGA 57.771 34.615 0.00 0.00 0.00 4.35
4475 4995 8.857098 TGATAACTTATTTAGCCTAGACGTGAT 58.143 33.333 0.00 0.00 0.00 3.06
4478 4998 8.868635 AACTTATTTAGCCTAGACGTGATAAC 57.131 34.615 0.00 0.00 0.00 1.89
4479 4999 8.235359 ACTTATTTAGCCTAGACGTGATAACT 57.765 34.615 0.00 0.00 0.00 2.24
4480 5000 8.693625 ACTTATTTAGCCTAGACGTGATAACTT 58.306 33.333 0.00 0.00 0.00 2.66
4481 5001 9.530633 CTTATTTAGCCTAGACGTGATAACTTT 57.469 33.333 0.00 0.00 0.00 2.66
4482 5002 9.525409 TTATTTAGCCTAGACGTGATAACTTTC 57.475 33.333 0.00 0.00 0.00 2.62
4483 5003 6.770746 TTAGCCTAGACGTGATAACTTTCT 57.229 37.500 0.00 0.00 0.00 2.52
4484 5004 5.662674 AGCCTAGACGTGATAACTTTCTT 57.337 39.130 0.00 0.00 0.00 2.52
4485 5005 5.652518 AGCCTAGACGTGATAACTTTCTTC 58.347 41.667 0.00 0.00 0.00 2.87
4486 5006 5.419471 AGCCTAGACGTGATAACTTTCTTCT 59.581 40.000 0.00 0.00 0.00 2.85
4487 5007 5.744819 GCCTAGACGTGATAACTTTCTTCTC 59.255 44.000 0.00 0.00 0.00 2.87
4488 5008 6.267070 CCTAGACGTGATAACTTTCTTCTCC 58.733 44.000 0.00 0.00 0.00 3.71
4489 5009 5.986501 AGACGTGATAACTTTCTTCTCCT 57.013 39.130 0.00 0.00 0.00 3.69
4490 5010 5.715070 AGACGTGATAACTTTCTTCTCCTG 58.285 41.667 0.00 0.00 0.00 3.86
4491 5011 4.822026 ACGTGATAACTTTCTTCTCCTGG 58.178 43.478 0.00 0.00 0.00 4.45
4492 5012 4.527038 ACGTGATAACTTTCTTCTCCTGGA 59.473 41.667 0.00 0.00 0.00 3.86
4493 5013 5.187967 ACGTGATAACTTTCTTCTCCTGGAT 59.812 40.000 0.00 0.00 0.00 3.41
4494 5014 6.109359 CGTGATAACTTTCTTCTCCTGGATT 58.891 40.000 0.00 0.00 0.00 3.01
4495 5015 6.595716 CGTGATAACTTTCTTCTCCTGGATTT 59.404 38.462 0.00 0.00 0.00 2.17
4496 5016 7.119846 CGTGATAACTTTCTTCTCCTGGATTTT 59.880 37.037 0.00 0.00 0.00 1.82
4497 5017 8.797438 GTGATAACTTTCTTCTCCTGGATTTTT 58.203 33.333 0.00 0.00 0.00 1.94
4537 5057 8.617809 ACATCCGATAATTTATGTGTAAACACC 58.382 33.333 10.58 0.00 45.88 4.16
4538 5058 8.616942 CATCCGATAATTTATGTGTAAACACCA 58.383 33.333 10.58 0.08 45.88 4.17
4539 5059 8.740123 TCCGATAATTTATGTGTAAACACCAT 57.260 30.769 10.58 7.00 45.88 3.55
4540 5060 8.616942 TCCGATAATTTATGTGTAAACACCATG 58.383 33.333 10.58 0.00 45.88 3.66
4541 5061 7.860373 CCGATAATTTATGTGTAAACACCATGG 59.140 37.037 11.19 11.19 45.88 3.66
4542 5062 8.402472 CGATAATTTATGTGTAAACACCATGGT 58.598 33.333 13.00 13.00 45.88 3.55
4547 5067 9.868277 ATTTATGTGTAAACACCATGGTAATTG 57.132 29.630 19.28 7.90 45.88 2.32
4548 5068 6.909550 ATGTGTAAACACCATGGTAATTGT 57.090 33.333 19.28 8.65 45.88 2.71
4549 5069 6.078202 TGTGTAAACACCATGGTAATTGTG 57.922 37.500 19.28 6.65 45.88 3.33
4550 5070 5.010112 TGTGTAAACACCATGGTAATTGTGG 59.990 40.000 19.28 5.76 45.88 4.17
4551 5071 4.524714 TGTAAACACCATGGTAATTGTGGG 59.475 41.667 19.28 4.93 34.49 4.61
4552 5072 1.555967 ACACCATGGTAATTGTGGGC 58.444 50.000 19.28 0.00 34.49 5.36
4553 5073 0.823460 CACCATGGTAATTGTGGGCC 59.177 55.000 19.28 0.00 37.33 5.80
4554 5074 0.682855 ACCATGGTAATTGTGGGCCG 60.683 55.000 18.10 0.00 37.33 6.13
4555 5075 0.395036 CCATGGTAATTGTGGGCCGA 60.395 55.000 2.57 0.00 0.00 5.54
4556 5076 1.024271 CATGGTAATTGTGGGCCGAG 58.976 55.000 0.00 0.00 0.00 4.63
4557 5077 0.916086 ATGGTAATTGTGGGCCGAGA 59.084 50.000 0.00 0.00 0.00 4.04
4558 5078 0.916086 TGGTAATTGTGGGCCGAGAT 59.084 50.000 0.00 0.00 0.00 2.75
4559 5079 1.283613 TGGTAATTGTGGGCCGAGATT 59.716 47.619 0.00 1.04 0.00 2.40
4560 5080 2.506231 TGGTAATTGTGGGCCGAGATTA 59.494 45.455 0.00 0.01 0.00 1.75
4561 5081 2.876550 GGTAATTGTGGGCCGAGATTAC 59.123 50.000 18.27 18.27 34.20 1.89
4562 5082 3.433173 GGTAATTGTGGGCCGAGATTACT 60.433 47.826 22.31 0.00 34.94 2.24
4563 5083 3.366052 AATTGTGGGCCGAGATTACTT 57.634 42.857 0.00 0.00 0.00 2.24
4564 5084 2.871096 TTGTGGGCCGAGATTACTTT 57.129 45.000 0.00 0.00 0.00 2.66
4565 5085 2.871096 TGTGGGCCGAGATTACTTTT 57.129 45.000 0.00 0.00 0.00 2.27
4566 5086 3.149005 TGTGGGCCGAGATTACTTTTT 57.851 42.857 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.329931 TGATGGCGGCTCCCTAAAAA 59.670 50.000 11.43 0.00 0.00 1.94
12 13 0.393808 GTGATGGCGGCTCCCTAAAA 60.394 55.000 11.43 0.00 0.00 1.52
24 25 3.858503 GCTCAGAAAAACAAGGTGATGGC 60.859 47.826 0.00 0.00 0.00 4.40
37 38 5.164620 TGGTCTGTATCATGCTCAGAAAA 57.835 39.130 13.07 5.31 39.42 2.29
51 52 5.516044 TCTAGAACCTGCTTATGGTCTGTA 58.484 41.667 0.00 0.00 36.69 2.74
55 56 5.351740 GTGTTTCTAGAACCTGCTTATGGTC 59.648 44.000 4.18 0.00 36.69 4.02
67 68 7.918562 TGCATTGTTTTTAGGTGTTTCTAGAAC 59.081 33.333 4.18 1.55 0.00 3.01
68 69 8.001881 TGCATTGTTTTTAGGTGTTTCTAGAA 57.998 30.769 0.00 0.00 0.00 2.10
70 71 6.863126 CCTGCATTGTTTTTAGGTGTTTCTAG 59.137 38.462 0.00 0.00 0.00 2.43
71 72 6.547880 TCCTGCATTGTTTTTAGGTGTTTCTA 59.452 34.615 0.00 0.00 0.00 2.10
72 73 5.362430 TCCTGCATTGTTTTTAGGTGTTTCT 59.638 36.000 0.00 0.00 0.00 2.52
73 74 5.596845 TCCTGCATTGTTTTTAGGTGTTTC 58.403 37.500 0.00 0.00 0.00 2.78
74 75 5.600696 CTCCTGCATTGTTTTTAGGTGTTT 58.399 37.500 0.00 0.00 0.00 2.83
75 76 4.501400 GCTCCTGCATTGTTTTTAGGTGTT 60.501 41.667 0.00 0.00 39.41 3.32
76 77 3.005791 GCTCCTGCATTGTTTTTAGGTGT 59.994 43.478 0.00 0.00 39.41 4.16
77 78 3.005684 TGCTCCTGCATTGTTTTTAGGTG 59.994 43.478 0.00 0.00 45.31 4.00
78 79 3.230134 TGCTCCTGCATTGTTTTTAGGT 58.770 40.909 0.00 0.00 45.31 3.08
79 80 3.940209 TGCTCCTGCATTGTTTTTAGG 57.060 42.857 0.00 0.00 45.31 2.69
103 104 0.179009 ATCCTGGTCATTGCCGATGG 60.179 55.000 0.00 0.00 36.37 3.51
107 108 1.097547 GTGGATCCTGGTCATTGCCG 61.098 60.000 14.23 0.00 0.00 5.69
113 114 3.770040 CGCGGTGGATCCTGGTCA 61.770 66.667 14.23 0.00 0.00 4.02
122 123 4.776322 CCATGGAAGCGCGGTGGA 62.776 66.667 13.41 0.00 31.59 4.02
130 131 0.182299 AGCCTTAGAGCCATGGAAGC 59.818 55.000 18.40 6.43 0.00 3.86
134 135 2.435805 TCTTGTAGCCTTAGAGCCATGG 59.564 50.000 7.63 7.63 0.00 3.66
149 150 2.692557 GCTGATCTGCCTCTCTCTTGTA 59.307 50.000 13.26 0.00 0.00 2.41
167 169 3.506096 CTGCCGGTGATGCTGCTG 61.506 66.667 1.90 0.00 0.00 4.41
168 170 4.790962 CCTGCCGGTGATGCTGCT 62.791 66.667 1.90 0.00 0.00 4.24
170 172 2.513204 CTCCTGCCGGTGATGCTG 60.513 66.667 1.90 0.00 0.00 4.41
180 182 2.436824 GACTTTCCGCCTCCTGCC 60.437 66.667 0.00 0.00 36.24 4.85
182 184 0.461961 CTAGGACTTTCCGCCTCCTG 59.538 60.000 0.00 0.00 42.75 3.86
183 185 0.335361 TCTAGGACTTTCCGCCTCCT 59.665 55.000 0.00 0.00 42.75 3.69
191 193 2.103941 CTCCCAGGCATCTAGGACTTTC 59.896 54.545 0.00 0.00 28.02 2.62
239 241 1.300311 AATGCGTCACGTCCAACGA 60.300 52.632 16.28 4.70 46.05 3.85
247 249 1.417592 GTCTCTGCAATGCGTCACG 59.582 57.895 0.00 0.00 0.00 4.35
266 268 4.974275 TGTCTTCTAGTTTCACGAGTTTCG 59.026 41.667 0.00 0.00 46.93 3.46
270 272 5.455056 ACATGTCTTCTAGTTTCACGAGT 57.545 39.130 0.00 0.00 0.00 4.18
271 273 6.771188 AAACATGTCTTCTAGTTTCACGAG 57.229 37.500 0.00 0.00 28.81 4.18
272 274 6.537301 ACAAAACATGTCTTCTAGTTTCACGA 59.463 34.615 0.00 0.00 37.96 4.35
304 306 7.328277 TGGAAAATCGGACAAAAATCGATAT 57.672 32.000 0.00 0.00 41.91 1.63
308 310 7.804614 TTTATGGAAAATCGGACAAAAATCG 57.195 32.000 0.00 0.00 0.00 3.34
315 317 8.200792 CCCAATTAATTTATGGAAAATCGGACA 58.799 33.333 6.27 0.00 36.27 4.02
318 320 6.989169 TGCCCAATTAATTTATGGAAAATCGG 59.011 34.615 6.27 0.00 36.27 4.18
399 423 4.134563 AGGTTGTCAGCACGAAGTTTTAT 58.865 39.130 0.00 0.00 41.61 1.40
409 433 7.147976 AGAAAATCAATTTAGGTTGTCAGCAC 58.852 34.615 0.00 0.00 0.00 4.40
415 439 7.839680 AGTGGAGAAAATCAATTTAGGTTGT 57.160 32.000 0.00 0.00 0.00 3.32
451 475 5.820423 GCCAGTCCCAAGTTTAAAATTTTGT 59.180 36.000 13.76 0.00 0.00 2.83
452 476 5.238432 GGCCAGTCCCAAGTTTAAAATTTTG 59.762 40.000 13.76 0.49 0.00 2.44
456 480 3.582164 TGGCCAGTCCCAAGTTTAAAAT 58.418 40.909 0.00 0.00 30.32 1.82
457 481 3.033659 TGGCCAGTCCCAAGTTTAAAA 57.966 42.857 0.00 0.00 30.32 1.52
460 484 1.005450 GGATGGCCAGTCCCAAGTTTA 59.995 52.381 13.05 0.00 38.61 2.01
463 487 1.852157 TGGATGGCCAGTCCCAAGT 60.852 57.895 23.47 1.58 39.92 3.16
464 488 3.089838 TGGATGGCCAGTCCCAAG 58.910 61.111 23.47 0.00 39.92 3.61
473 497 2.592861 GCGTCAGGATGGATGGCC 60.593 66.667 0.00 0.00 36.16 5.36
474 498 1.890979 CTGCGTCAGGATGGATGGC 60.891 63.158 0.00 0.00 36.16 4.40
475 499 4.451241 CTGCGTCAGGATGGATGG 57.549 61.111 0.00 0.00 36.16 3.51
484 508 2.125512 GTAGTGCCCCTGCGTCAG 60.126 66.667 0.52 0.52 41.78 3.51
485 509 4.063967 CGTAGTGCCCCTGCGTCA 62.064 66.667 3.38 0.00 43.34 4.35
489 513 1.141234 GACTACGTAGTGCCCCTGC 59.859 63.158 31.91 12.35 45.73 4.85
490 514 1.432251 CGACTACGTAGTGCCCCTG 59.568 63.158 31.91 10.84 45.73 4.45
491 515 3.915575 CGACTACGTAGTGCCCCT 58.084 61.111 31.91 6.92 45.73 4.79
501 525 6.263344 TCCATAGAAGAAATCAACGACTACG 58.737 40.000 0.00 0.00 45.75 3.51
502 526 7.221067 CACTCCATAGAAGAAATCAACGACTAC 59.779 40.741 0.00 0.00 0.00 2.73
503 527 7.122204 TCACTCCATAGAAGAAATCAACGACTA 59.878 37.037 0.00 0.00 0.00 2.59
504 528 6.071334 TCACTCCATAGAAGAAATCAACGACT 60.071 38.462 0.00 0.00 0.00 4.18
505 529 6.100004 TCACTCCATAGAAGAAATCAACGAC 58.900 40.000 0.00 0.00 0.00 4.34
506 530 6.280855 TCACTCCATAGAAGAAATCAACGA 57.719 37.500 0.00 0.00 0.00 3.85
507 531 6.968131 TTCACTCCATAGAAGAAATCAACG 57.032 37.500 0.00 0.00 0.00 4.10
508 532 7.012799 GGGATTCACTCCATAGAAGAAATCAAC 59.987 40.741 0.00 0.00 46.98 3.18
509 533 7.056635 GGGATTCACTCCATAGAAGAAATCAA 58.943 38.462 0.00 0.00 46.98 2.57
510 534 6.388100 AGGGATTCACTCCATAGAAGAAATCA 59.612 38.462 0.00 0.00 46.98 2.57
511 535 6.836242 AGGGATTCACTCCATAGAAGAAATC 58.164 40.000 0.00 0.00 46.98 2.17
512 536 6.838401 AGGGATTCACTCCATAGAAGAAAT 57.162 37.500 0.00 0.00 46.98 2.17
513 537 7.255977 CGATAGGGATTCACTCCATAGAAGAAA 60.256 40.741 0.00 0.00 43.24 2.52
514 538 6.209589 CGATAGGGATTCACTCCATAGAAGAA 59.790 42.308 0.00 0.00 43.24 2.52
515 539 5.712446 CGATAGGGATTCACTCCATAGAAGA 59.288 44.000 0.00 0.00 43.24 2.87
516 540 5.478679 ACGATAGGGATTCACTCCATAGAAG 59.521 44.000 0.00 0.00 43.24 2.85
517 541 5.394738 ACGATAGGGATTCACTCCATAGAA 58.605 41.667 0.00 0.00 43.24 2.10
518 542 4.999310 ACGATAGGGATTCACTCCATAGA 58.001 43.478 0.00 0.00 43.24 1.98
519 543 5.730296 AACGATAGGGATTCACTCCATAG 57.270 43.478 0.00 0.00 43.24 2.23
520 544 7.453439 TGATAAACGATAGGGATTCACTCCATA 59.547 37.037 0.00 0.00 46.98 2.74
521 545 6.270000 TGATAAACGATAGGGATTCACTCCAT 59.730 38.462 0.00 0.00 46.98 3.41
522 546 5.600898 TGATAAACGATAGGGATTCACTCCA 59.399 40.000 0.00 0.00 46.98 3.86
523 547 6.097915 TGATAAACGATAGGGATTCACTCC 57.902 41.667 0.00 0.00 44.11 3.85
524 548 7.489757 GCTATGATAAACGATAGGGATTCACTC 59.510 40.741 0.00 0.00 43.77 3.51
525 549 7.039011 TGCTATGATAAACGATAGGGATTCACT 60.039 37.037 0.00 0.00 43.77 3.41
526 550 7.097192 TGCTATGATAAACGATAGGGATTCAC 58.903 38.462 0.00 0.00 43.77 3.18
527 551 7.239763 TGCTATGATAAACGATAGGGATTCA 57.760 36.000 0.00 0.00 43.77 2.57
528 552 8.443937 GTTTGCTATGATAAACGATAGGGATTC 58.556 37.037 0.00 0.00 43.77 2.52
529 553 8.157476 AGTTTGCTATGATAAACGATAGGGATT 58.843 33.333 0.00 0.00 40.68 3.01
530 554 7.680730 AGTTTGCTATGATAAACGATAGGGAT 58.319 34.615 0.00 0.00 40.68 3.85
531 555 7.062749 AGTTTGCTATGATAAACGATAGGGA 57.937 36.000 0.00 0.00 40.68 4.20
532 556 6.089551 CGAGTTTGCTATGATAAACGATAGGG 59.910 42.308 0.00 0.00 40.68 3.53
533 557 6.089551 CCGAGTTTGCTATGATAAACGATAGG 59.910 42.308 0.00 0.00 40.68 2.57
534 558 6.861572 TCCGAGTTTGCTATGATAAACGATAG 59.138 38.462 0.00 0.00 40.68 2.08
535 559 6.741109 TCCGAGTTTGCTATGATAAACGATA 58.259 36.000 0.00 0.00 40.68 2.92
536 560 5.597806 TCCGAGTTTGCTATGATAAACGAT 58.402 37.500 0.00 0.00 40.68 3.73
537 561 5.001237 TCCGAGTTTGCTATGATAAACGA 57.999 39.130 0.00 0.00 40.68 3.85
538 562 5.462068 TCATCCGAGTTTGCTATGATAAACG 59.538 40.000 0.00 0.00 40.68 3.60
539 563 6.844696 TCATCCGAGTTTGCTATGATAAAC 57.155 37.500 0.00 0.00 37.12 2.01
540 564 6.650807 GGATCATCCGAGTTTGCTATGATAAA 59.349 38.462 0.00 0.00 37.40 1.40
541 565 6.166279 GGATCATCCGAGTTTGCTATGATAA 58.834 40.000 0.00 0.00 37.40 1.75
542 566 5.724328 GGATCATCCGAGTTTGCTATGATA 58.276 41.667 0.00 0.00 37.40 2.15
543 567 4.573900 GGATCATCCGAGTTTGCTATGAT 58.426 43.478 0.00 0.00 39.39 2.45
544 568 3.995199 GGATCATCCGAGTTTGCTATGA 58.005 45.455 0.00 0.00 0.00 2.15
557 581 2.219325 CTAGAGCCGCCGGATCATCC 62.219 65.000 24.76 0.00 41.08 3.51
558 582 1.214062 CTAGAGCCGCCGGATCATC 59.786 63.158 24.76 7.06 41.08 2.92
559 583 1.115930 AACTAGAGCCGCCGGATCAT 61.116 55.000 24.76 11.12 41.08 2.45
560 584 0.466739 TAACTAGAGCCGCCGGATCA 60.467 55.000 24.76 8.69 41.08 2.92
561 585 0.889306 ATAACTAGAGCCGCCGGATC 59.111 55.000 14.68 14.68 38.56 3.36
562 586 0.889306 GATAACTAGAGCCGCCGGAT 59.111 55.000 7.68 0.00 0.00 4.18
563 587 1.512996 CGATAACTAGAGCCGCCGGA 61.513 60.000 7.68 0.00 0.00 5.14
564 588 1.081376 CGATAACTAGAGCCGCCGG 60.081 63.158 0.00 0.00 0.00 6.13
565 589 1.081376 CCGATAACTAGAGCCGCCG 60.081 63.158 0.00 0.00 0.00 6.46
566 590 1.177256 TCCCGATAACTAGAGCCGCC 61.177 60.000 0.00 0.00 0.00 6.13
567 591 0.889306 ATCCCGATAACTAGAGCCGC 59.111 55.000 0.00 0.00 0.00 6.53
568 592 2.414293 CGAATCCCGATAACTAGAGCCG 60.414 54.545 0.00 0.00 41.76 5.52
569 593 2.671632 GCGAATCCCGATAACTAGAGCC 60.672 54.545 0.00 0.00 41.76 4.70
570 594 2.229302 AGCGAATCCCGATAACTAGAGC 59.771 50.000 0.00 0.00 41.76 4.09
571 595 3.119779 GGAGCGAATCCCGATAACTAGAG 60.120 52.174 0.00 0.00 43.01 2.43
572 596 2.818432 GGAGCGAATCCCGATAACTAGA 59.182 50.000 0.00 0.00 43.01 2.43
573 597 3.219052 GGAGCGAATCCCGATAACTAG 57.781 52.381 0.00 0.00 43.01 2.57
584 608 1.218230 GCGTCTGGATGGAGCGAATC 61.218 60.000 0.00 0.00 0.00 2.52
585 609 1.227380 GCGTCTGGATGGAGCGAAT 60.227 57.895 0.00 0.00 0.00 3.34
586 610 2.184322 GCGTCTGGATGGAGCGAA 59.816 61.111 0.00 0.00 0.00 4.70
597 621 3.798639 TTGTTTTGGCGCGCGTCTG 62.799 57.895 35.68 5.68 0.00 3.51
598 622 3.521308 CTTGTTTTGGCGCGCGTCT 62.521 57.895 35.68 0.00 0.00 4.18
599 623 3.091022 CTTGTTTTGGCGCGCGTC 61.091 61.111 30.23 30.23 0.00 5.19
600 624 3.404141 AACTTGTTTTGGCGCGCGT 62.404 52.632 32.35 11.87 0.00 6.01
601 625 2.653766 AACTTGTTTTGGCGCGCG 60.654 55.556 28.44 28.44 0.00 6.86
602 626 2.584967 CCAACTTGTTTTGGCGCGC 61.585 57.895 25.94 25.94 39.78 6.86
603 627 0.318614 ATCCAACTTGTTTTGGCGCG 60.319 50.000 0.00 0.00 45.12 6.86
604 628 1.139163 CATCCAACTTGTTTTGGCGC 58.861 50.000 0.00 0.00 45.12 6.53
605 629 1.339610 TCCATCCAACTTGTTTTGGCG 59.660 47.619 0.00 0.00 45.12 5.69
606 630 3.130633 GTTCCATCCAACTTGTTTTGGC 58.869 45.455 0.00 0.00 45.12 4.52
607 631 4.670896 AGTTCCATCCAACTTGTTTTGG 57.329 40.909 0.00 0.00 46.64 3.28
608 632 6.818142 AGAAAAGTTCCATCCAACTTGTTTTG 59.182 34.615 0.00 0.00 44.28 2.44
609 633 6.818142 CAGAAAAGTTCCATCCAACTTGTTTT 59.182 34.615 0.00 0.00 44.28 2.43
610 634 6.340522 CAGAAAAGTTCCATCCAACTTGTTT 58.659 36.000 0.00 0.00 44.28 2.83
611 635 5.163416 CCAGAAAAGTTCCATCCAACTTGTT 60.163 40.000 0.00 0.00 44.28 2.83
612 636 4.342092 CCAGAAAAGTTCCATCCAACTTGT 59.658 41.667 0.00 0.00 44.28 3.16
613 637 4.584325 TCCAGAAAAGTTCCATCCAACTTG 59.416 41.667 0.00 0.00 44.28 3.16
614 638 4.803452 TCCAGAAAAGTTCCATCCAACTT 58.197 39.130 0.00 0.00 46.51 2.66
615 639 4.453480 TCCAGAAAAGTTCCATCCAACT 57.547 40.909 0.00 0.00 38.30 3.16
616 640 4.262036 GGTTCCAGAAAAGTTCCATCCAAC 60.262 45.833 0.00 0.00 0.00 3.77
617 641 3.895041 GGTTCCAGAAAAGTTCCATCCAA 59.105 43.478 0.00 0.00 0.00 3.53
618 642 3.117322 TGGTTCCAGAAAAGTTCCATCCA 60.117 43.478 0.00 0.00 0.00 3.41
619 643 3.496331 TGGTTCCAGAAAAGTTCCATCC 58.504 45.455 0.00 0.00 0.00 3.51
620 644 4.142600 CGATGGTTCCAGAAAAGTTCCATC 60.143 45.833 13.25 13.25 43.38 3.51
621 645 3.758554 CGATGGTTCCAGAAAAGTTCCAT 59.241 43.478 0.00 0.00 36.99 3.41
622 646 3.146066 CGATGGTTCCAGAAAAGTTCCA 58.854 45.455 0.00 0.00 0.00 3.53
623 647 2.488153 CCGATGGTTCCAGAAAAGTTCC 59.512 50.000 0.00 0.00 0.00 3.62
624 648 2.488153 CCCGATGGTTCCAGAAAAGTTC 59.512 50.000 0.00 0.00 0.00 3.01
625 649 2.107552 TCCCGATGGTTCCAGAAAAGTT 59.892 45.455 0.00 0.00 0.00 2.66
626 650 1.702957 TCCCGATGGTTCCAGAAAAGT 59.297 47.619 0.00 0.00 0.00 2.66
627 651 2.489938 TCCCGATGGTTCCAGAAAAG 57.510 50.000 0.00 0.00 0.00 2.27
628 652 3.521937 ACTATCCCGATGGTTCCAGAAAA 59.478 43.478 0.00 0.00 0.00 2.29
629 653 3.112263 ACTATCCCGATGGTTCCAGAAA 58.888 45.455 0.00 0.00 0.00 2.52
630 654 2.434336 CACTATCCCGATGGTTCCAGAA 59.566 50.000 0.00 0.00 29.60 3.02
631 655 2.039418 CACTATCCCGATGGTTCCAGA 58.961 52.381 0.00 0.00 29.60 3.86
632 656 1.541233 GCACTATCCCGATGGTTCCAG 60.541 57.143 0.00 0.00 29.60 3.86
633 657 0.468226 GCACTATCCCGATGGTTCCA 59.532 55.000 0.00 0.00 29.60 3.53
634 658 0.468226 TGCACTATCCCGATGGTTCC 59.532 55.000 0.00 0.00 29.60 3.62
635 659 1.583054 GTGCACTATCCCGATGGTTC 58.417 55.000 10.32 0.00 29.60 3.62
636 660 0.179084 CGTGCACTATCCCGATGGTT 60.179 55.000 16.19 0.00 29.60 3.67
637 661 1.327690 ACGTGCACTATCCCGATGGT 61.328 55.000 16.19 0.00 32.44 3.55
638 662 0.875908 CACGTGCACTATCCCGATGG 60.876 60.000 16.19 0.00 0.00 3.51
639 663 1.490693 GCACGTGCACTATCCCGATG 61.491 60.000 34.52 0.00 41.59 3.84
640 664 1.227263 GCACGTGCACTATCCCGAT 60.227 57.895 34.52 0.00 41.59 4.18
641 665 2.183300 GCACGTGCACTATCCCGA 59.817 61.111 34.52 0.00 41.59 5.14
642 666 2.890474 GGCACGTGCACTATCCCG 60.890 66.667 38.60 2.55 44.36 5.14
643 667 1.521681 GAGGCACGTGCACTATCCC 60.522 63.158 38.60 21.09 44.36 3.85
644 668 1.521681 GGAGGCACGTGCACTATCC 60.522 63.158 38.60 31.75 44.36 2.59
645 669 0.744874 TAGGAGGCACGTGCACTATC 59.255 55.000 38.60 27.98 44.36 2.08
646 670 0.460311 GTAGGAGGCACGTGCACTAT 59.540 55.000 38.60 24.84 44.36 2.12
647 671 0.611062 AGTAGGAGGCACGTGCACTA 60.611 55.000 38.60 30.96 44.36 2.74
648 672 0.611062 TAGTAGGAGGCACGTGCACT 60.611 55.000 38.60 32.12 44.36 4.40
649 673 0.179134 CTAGTAGGAGGCACGTGCAC 60.179 60.000 38.60 29.83 44.36 4.57
650 674 0.611062 ACTAGTAGGAGGCACGTGCA 60.611 55.000 38.60 18.06 44.36 4.57
651 675 1.334243 CTACTAGTAGGAGGCACGTGC 59.666 57.143 32.15 32.15 41.14 5.34
652 676 1.334243 GCTACTAGTAGGAGGCACGTG 59.666 57.143 27.24 12.28 33.87 4.49
653 677 1.677942 GCTACTAGTAGGAGGCACGT 58.322 55.000 27.24 0.00 33.87 4.49
654 678 0.953003 GGCTACTAGTAGGAGGCACG 59.047 60.000 27.01 4.81 35.89 5.34
655 679 2.068834 TGGCTACTAGTAGGAGGCAC 57.931 55.000 29.91 12.02 40.48 5.01
656 680 2.840640 TTGGCTACTAGTAGGAGGCA 57.159 50.000 29.91 29.91 43.29 4.75
657 681 3.032459 ACTTTGGCTACTAGTAGGAGGC 58.968 50.000 25.64 25.64 36.36 4.70
658 682 5.198965 TGTACTTTGGCTACTAGTAGGAGG 58.801 45.833 27.24 7.21 33.87 4.30
659 683 6.963083 ATGTACTTTGGCTACTAGTAGGAG 57.037 41.667 27.24 4.87 33.87 3.69
660 684 6.893554 TGAATGTACTTTGGCTACTAGTAGGA 59.106 38.462 27.24 0.36 33.87 2.94
661 685 7.108841 TGAATGTACTTTGGCTACTAGTAGG 57.891 40.000 27.24 14.79 33.87 3.18
662 686 9.601217 AAATGAATGTACTTTGGCTACTAGTAG 57.399 33.333 23.25 23.25 36.29 2.57
664 688 9.953565 TTAAATGAATGTACTTTGGCTACTAGT 57.046 29.630 0.00 0.00 0.00 2.57
667 691 8.520351 GGTTTAAATGAATGTACTTTGGCTACT 58.480 33.333 0.00 0.00 0.00 2.57
668 692 8.301002 TGGTTTAAATGAATGTACTTTGGCTAC 58.699 33.333 0.00 0.00 0.00 3.58
669 693 8.410673 TGGTTTAAATGAATGTACTTTGGCTA 57.589 30.769 0.00 0.00 0.00 3.93
670 694 7.232534 TCTGGTTTAAATGAATGTACTTTGGCT 59.767 33.333 0.00 0.00 0.00 4.75
671 695 7.375053 TCTGGTTTAAATGAATGTACTTTGGC 58.625 34.615 0.00 0.00 0.00 4.52
695 719 6.414408 AGACAATTCGAAGATGACATGTTC 57.586 37.500 17.68 13.91 35.04 3.18
702 726 6.758416 CCAGTATGAAGACAATTCGAAGATGA 59.242 38.462 17.68 0.00 39.69 2.92
731 755 9.265901 CTGTCCCATTTTGTAGAGATATGTTAG 57.734 37.037 0.00 0.00 0.00 2.34
757 781 4.841443 ATCGTTGTAGTTTGGTTTTCCC 57.159 40.909 0.00 0.00 39.73 3.97
779 803 7.448748 AAGTTGGCGTTAAGTTTTCATCTAT 57.551 32.000 0.00 0.00 0.00 1.98
783 807 6.628919 ACTAAGTTGGCGTTAAGTTTTCAT 57.371 33.333 0.42 0.00 0.00 2.57
816 840 7.517259 GCAAAATTACTCTGGCTTGACAAAAAG 60.517 37.037 0.00 0.00 0.00 2.27
856 881 4.615386 CACTGAAAAATACGACGACGAAG 58.385 43.478 15.32 0.00 42.66 3.79
904 929 5.277925 GGAATGCCAAAAAGGAAATTGTGTG 60.278 40.000 0.00 0.00 41.22 3.82
914 939 3.490439 AACTTGGGAATGCCAAAAAGG 57.510 42.857 7.79 0.00 41.84 3.11
915 940 4.035441 CACAAACTTGGGAATGCCAAAAAG 59.965 41.667 7.79 0.00 31.80 2.27
920 945 1.786937 ACACAAACTTGGGAATGCCA 58.213 45.000 0.00 0.00 35.04 4.92
936 961 4.055360 GAGGTACCCATTTTTGCAAACAC 58.945 43.478 12.39 1.69 0.00 3.32
986 1011 2.226330 TGTTCATTGTGGTTTCCCTCG 58.774 47.619 0.00 0.00 0.00 4.63
987 1012 4.524328 AGAATGTTCATTGTGGTTTCCCTC 59.476 41.667 2.63 0.00 0.00 4.30
1030 1093 8.335532 TCTGAACTCTTTGTCTCAAAGAAAAA 57.664 30.769 20.31 2.59 36.01 1.94
1031 1094 7.921786 TCTGAACTCTTTGTCTCAAAGAAAA 57.078 32.000 20.31 9.45 36.01 2.29
1032 1095 7.413000 CGTTCTGAACTCTTTGTCTCAAAGAAA 60.413 37.037 20.31 11.31 36.01 2.52
1033 1096 6.036083 CGTTCTGAACTCTTTGTCTCAAAGAA 59.964 38.462 20.31 9.18 36.01 2.52
1034 1097 5.520288 CGTTCTGAACTCTTTGTCTCAAAGA 59.480 40.000 17.60 19.26 35.25 2.52
1036 1099 4.034048 GCGTTCTGAACTCTTTGTCTCAAA 59.966 41.667 17.60 0.00 0.00 2.69
1037 1100 3.555956 GCGTTCTGAACTCTTTGTCTCAA 59.444 43.478 17.60 0.00 0.00 3.02
1038 1101 3.123804 GCGTTCTGAACTCTTTGTCTCA 58.876 45.455 17.60 0.00 0.00 3.27
1039 1102 2.476997 GGCGTTCTGAACTCTTTGTCTC 59.523 50.000 17.60 0.00 0.00 3.36
1041 1104 2.484889 AGGCGTTCTGAACTCTTTGTC 58.515 47.619 17.60 4.19 0.00 3.18
1042 1105 2.622064 AGGCGTTCTGAACTCTTTGT 57.378 45.000 17.60 0.00 0.00 2.83
1043 1106 3.120511 GCTTAGGCGTTCTGAACTCTTTG 60.121 47.826 17.60 11.35 0.00 2.77
1044 1107 3.067833 GCTTAGGCGTTCTGAACTCTTT 58.932 45.455 17.60 6.23 0.00 2.52
1045 1108 2.613223 GGCTTAGGCGTTCTGAACTCTT 60.613 50.000 17.60 9.38 39.81 2.85
1046 1109 1.066787 GGCTTAGGCGTTCTGAACTCT 60.067 52.381 17.60 15.79 39.81 3.24
1047 1110 1.360820 GGCTTAGGCGTTCTGAACTC 58.639 55.000 17.60 10.24 39.81 3.01
1048 1111 0.036294 GGGCTTAGGCGTTCTGAACT 60.036 55.000 17.60 2.80 39.81 3.01
1049 1112 1.025113 GGGGCTTAGGCGTTCTGAAC 61.025 60.000 10.48 10.48 39.81 3.18
1050 1113 1.298667 GGGGCTTAGGCGTTCTGAA 59.701 57.895 0.00 0.00 39.81 3.02
1051 1114 1.485294 TTGGGGCTTAGGCGTTCTGA 61.485 55.000 0.00 0.00 39.81 3.27
1052 1115 0.608035 TTTGGGGCTTAGGCGTTCTG 60.608 55.000 0.00 0.00 39.81 3.02
1054 1117 0.891904 TGTTTGGGGCTTAGGCGTTC 60.892 55.000 0.00 0.00 39.81 3.95
1057 1120 2.046285 CCTGTTTGGGGCTTAGGCG 61.046 63.158 0.00 0.00 39.81 5.52
1058 1121 0.965866 GTCCTGTTTGGGGCTTAGGC 60.966 60.000 0.00 0.00 36.20 3.93
1059 1122 0.323451 GGTCCTGTTTGGGGCTTAGG 60.323 60.000 0.00 0.00 36.20 2.69
1060 1123 0.323451 GGGTCCTGTTTGGGGCTTAG 60.323 60.000 0.00 0.00 36.20 2.18
1061 1124 1.771646 GGGTCCTGTTTGGGGCTTA 59.228 57.895 0.00 0.00 36.20 3.09
1062 1125 2.526110 GGGTCCTGTTTGGGGCTT 59.474 61.111 0.00 0.00 36.20 4.35
1063 1126 3.590574 GGGGTCCTGTTTGGGGCT 61.591 66.667 0.00 0.00 36.20 5.19
1065 1128 3.576259 ACGGGGTCCTGTTTGGGG 61.576 66.667 0.00 0.00 36.20 4.96
1066 1129 2.282180 CACGGGGTCCTGTTTGGG 60.282 66.667 0.00 0.00 36.20 4.12
1067 1130 2.282180 CCACGGGGTCCTGTTTGG 60.282 66.667 0.00 0.00 32.44 3.28
1068 1131 2.282180 CCCACGGGGTCCTGTTTG 60.282 66.667 1.28 0.00 38.25 2.93
1303 1376 3.532155 GAGGAGCTCGGCGGTGAT 61.532 66.667 7.21 0.00 0.00 3.06
1313 1386 2.925170 ACGGCTTGTGGAGGAGCT 60.925 61.111 0.00 0.00 38.89 4.09
1524 1733 1.968017 CATGGCGTTGTGGAGCACT 60.968 57.895 0.00 0.00 35.11 4.40
1602 1811 0.908198 GAAGGGAGTCAGAGGCATGT 59.092 55.000 0.00 0.00 0.00 3.21
1604 1813 1.965754 GCGAAGGGAGTCAGAGGCAT 61.966 60.000 0.00 0.00 0.00 4.40
1606 1815 2.185608 GCGAAGGGAGTCAGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
1607 1816 2.726351 GGGCGAAGGGAGTCAGAGG 61.726 68.421 0.00 0.00 0.00 3.69
1801 2010 3.047877 CACCTTCCGTGCGTTCCC 61.048 66.667 0.00 0.00 35.18 3.97
2070 2279 1.372872 GAACCCGGCATTTGCACAC 60.373 57.895 4.74 0.00 44.36 3.82
2175 2384 4.342359 ACTTCGAGTATAAGGTCACCAGT 58.658 43.478 0.00 0.00 0.00 4.00
2373 2582 2.779430 TGCAAGACCTCCATGGACATAT 59.221 45.455 11.44 0.00 39.71 1.78
2437 2646 4.240881 AGGTGTAATCACATGGCTTGAT 57.759 40.909 7.45 0.00 45.45 2.57
2847 3056 4.043596 AGTGATCTTCTCCAGGGCTAATT 58.956 43.478 0.00 0.00 0.00 1.40
3265 3663 4.639310 CAGCTTTCTCATCTTAGCACCAAT 59.361 41.667 0.00 0.00 36.11 3.16
3331 3729 9.635404 AAATAATACGTATTCCTTTTGATGGGA 57.365 29.630 23.51 2.75 30.74 4.37
3366 3841 4.527564 CAAAACTAACTGCCAGTTTCTCG 58.472 43.478 16.40 5.04 43.62 4.04
3423 3898 7.484959 CCGCATATTCTCAAGTTTTTAAGAACC 59.515 37.037 5.31 0.00 31.05 3.62
3578 4053 0.751452 TGCCATGACAGCAAGCAAAA 59.249 45.000 0.00 0.00 37.28 2.44
3620 4096 4.695455 TGGCTTTTGAATCCTCGACTTAAG 59.305 41.667 0.00 0.00 0.00 1.85
3628 4104 8.037166 AGTTTATGAATTGGCTTTTGAATCCTC 58.963 33.333 0.00 0.00 0.00 3.71
3682 4160 4.504461 CGTGAGATAACTGGCTATTGTCAC 59.496 45.833 0.00 0.00 0.00 3.67
3713 4191 6.331369 TCTCTCATTCAAAAATTGTCCACC 57.669 37.500 0.00 0.00 0.00 4.61
3738 4216 3.458487 AGTTCAGGGTTGTAAAGTGGACT 59.542 43.478 0.00 0.00 0.00 3.85
3834 4312 5.054477 TGACTGTTTCAACTGCTAGTAACC 58.946 41.667 0.00 0.00 0.00 2.85
3878 4356 3.317603 AATCGAGGTGCAATTTTTGGG 57.682 42.857 0.00 0.00 0.00 4.12
3997 4496 7.392494 TGGTGTCACTTGTTTATTTACAACA 57.608 32.000 2.35 0.00 34.50 3.33
4060 4559 2.161609 CACGAAAAGGGGAATTCTTCGG 59.838 50.000 22.77 12.76 42.33 4.30
4061 4560 3.471495 CACGAAAAGGGGAATTCTTCG 57.529 47.619 19.37 19.37 43.35 3.79
4070 4569 0.912486 AGATCTCCCACGAAAAGGGG 59.088 55.000 0.00 0.00 46.77 4.79
4072 4571 2.770164 ACAGATCTCCCACGAAAAGG 57.230 50.000 0.00 0.00 0.00 3.11
4158 4678 4.620723 ACACTCTGACCCCAATATCTGTA 58.379 43.478 0.00 0.00 0.00 2.74
4175 4695 5.597813 AGAAAATCACATCGACAACACTC 57.402 39.130 0.00 0.00 0.00 3.51
4180 4700 5.766150 ACCAAAGAAAATCACATCGACAA 57.234 34.783 0.00 0.00 0.00 3.18
4244 4764 4.207891 TCACAGGATCAAGAAAGCTACC 57.792 45.455 0.00 0.00 0.00 3.18
4262 4782 9.893305 GGCATATTTTACAATAACCTGTATCAC 57.107 33.333 0.00 0.00 31.96 3.06
4263 4783 9.860650 AGGCATATTTTACAATAACCTGTATCA 57.139 29.630 6.00 0.00 35.55 2.15
4266 4786 8.832521 CGAAGGCATATTTTACAATAACCTGTA 58.167 33.333 7.13 0.00 36.38 2.74
4267 4787 7.201785 CCGAAGGCATATTTTACAATAACCTGT 60.202 37.037 7.13 0.00 46.14 4.00
4268 4788 7.138736 CCGAAGGCATATTTTACAATAACCTG 58.861 38.462 7.13 0.00 46.14 4.00
4269 4789 7.272037 CCGAAGGCATATTTTACAATAACCT 57.728 36.000 2.28 2.28 46.14 3.50
4284 4804 7.554835 TATTTACACAGAAATTACCGAAGGCAT 59.445 33.333 0.00 0.00 39.76 4.40
4285 4805 6.879993 TATTTACACAGAAATTACCGAAGGCA 59.120 34.615 0.00 0.00 39.76 4.75
4286 4806 7.311364 TATTTACACAGAAATTACCGAAGGC 57.689 36.000 0.00 0.00 39.76 4.35
4287 4807 7.065324 TGCTATTTACACAGAAATTACCGAAGG 59.935 37.037 0.00 0.00 40.99 3.46
4288 4808 7.970384 TGCTATTTACACAGAAATTACCGAAG 58.030 34.615 0.00 0.00 31.51 3.79
4289 4809 7.908827 TGCTATTTACACAGAAATTACCGAA 57.091 32.000 0.00 0.00 31.51 4.30
4290 4810 7.011950 CCATGCTATTTACACAGAAATTACCGA 59.988 37.037 0.00 0.00 31.51 4.69
4291 4811 7.132213 CCATGCTATTTACACAGAAATTACCG 58.868 38.462 0.00 0.00 31.51 4.02
4292 4812 7.996385 ACCATGCTATTTACACAGAAATTACC 58.004 34.615 0.00 0.00 31.51 2.85
4299 4819 9.634163 CGTATATTACCATGCTATTTACACAGA 57.366 33.333 0.00 0.00 0.00 3.41
4300 4820 8.380644 GCGTATATTACCATGCTATTTACACAG 58.619 37.037 0.00 0.00 0.00 3.66
4301 4821 7.873505 TGCGTATATTACCATGCTATTTACACA 59.126 33.333 0.00 0.00 0.00 3.72
4302 4822 8.246908 TGCGTATATTACCATGCTATTTACAC 57.753 34.615 0.00 0.00 0.00 2.90
4303 4823 7.064134 GCTGCGTATATTACCATGCTATTTACA 59.936 37.037 0.00 0.00 0.00 2.41
4304 4824 7.399523 GCTGCGTATATTACCATGCTATTTAC 58.600 38.462 0.00 0.00 0.00 2.01
4305 4825 6.254804 CGCTGCGTATATTACCATGCTATTTA 59.745 38.462 14.93 0.00 0.00 1.40
4306 4826 5.063438 CGCTGCGTATATTACCATGCTATTT 59.937 40.000 14.93 0.00 0.00 1.40
4307 4827 4.566759 CGCTGCGTATATTACCATGCTATT 59.433 41.667 14.93 0.00 0.00 1.73
4308 4828 4.112634 CGCTGCGTATATTACCATGCTAT 58.887 43.478 14.93 0.00 0.00 2.97
4309 4829 3.057104 ACGCTGCGTATATTACCATGCTA 60.057 43.478 27.89 0.00 38.73 3.49
4310 4830 2.288825 ACGCTGCGTATATTACCATGCT 60.289 45.455 27.89 0.00 38.73 3.79
4311 4831 2.066262 ACGCTGCGTATATTACCATGC 58.934 47.619 27.89 0.00 38.73 4.06
4312 4832 4.729595 TCTACGCTGCGTATATTACCATG 58.270 43.478 31.85 18.15 41.53 3.66
4313 4833 4.674623 GCTCTACGCTGCGTATATTACCAT 60.675 45.833 31.85 7.50 41.53 3.55
4314 4834 3.365666 GCTCTACGCTGCGTATATTACCA 60.366 47.826 31.85 12.20 41.53 3.25
4315 4835 3.169733 GCTCTACGCTGCGTATATTACC 58.830 50.000 31.85 15.03 41.53 2.85
4328 4848 6.852345 GTCTAAGTAAGTTATCAGCTCTACGC 59.148 42.308 0.00 0.00 39.57 4.42
4329 4849 7.042858 TCGTCTAAGTAAGTTATCAGCTCTACG 60.043 40.741 0.00 0.00 0.00 3.51
4330 4850 8.140677 TCGTCTAAGTAAGTTATCAGCTCTAC 57.859 38.462 0.00 0.00 0.00 2.59
4331 4851 8.728337 TTCGTCTAAGTAAGTTATCAGCTCTA 57.272 34.615 0.00 0.00 0.00 2.43
4332 4852 7.627298 TTCGTCTAAGTAAGTTATCAGCTCT 57.373 36.000 0.00 0.00 0.00 4.09
4333 4853 7.754027 TGTTTCGTCTAAGTAAGTTATCAGCTC 59.246 37.037 0.00 0.00 0.00 4.09
4334 4854 7.600065 TGTTTCGTCTAAGTAAGTTATCAGCT 58.400 34.615 0.00 0.00 0.00 4.24
4335 4855 7.807687 TGTTTCGTCTAAGTAAGTTATCAGC 57.192 36.000 0.00 0.00 0.00 4.26
4336 4856 8.808529 CCATGTTTCGTCTAAGTAAGTTATCAG 58.191 37.037 0.00 0.00 0.00 2.90
4337 4857 8.308931 ACCATGTTTCGTCTAAGTAAGTTATCA 58.691 33.333 0.00 0.00 0.00 2.15
4338 4858 8.699283 ACCATGTTTCGTCTAAGTAAGTTATC 57.301 34.615 0.00 0.00 0.00 1.75
4340 4860 9.410556 GTTACCATGTTTCGTCTAAGTAAGTTA 57.589 33.333 0.00 0.00 0.00 2.24
4341 4861 8.146412 AGTTACCATGTTTCGTCTAAGTAAGTT 58.854 33.333 0.00 0.00 0.00 2.66
4342 4862 7.664758 AGTTACCATGTTTCGTCTAAGTAAGT 58.335 34.615 0.00 0.00 0.00 2.24
4343 4863 8.530269 AAGTTACCATGTTTCGTCTAAGTAAG 57.470 34.615 0.00 0.00 0.00 2.34
4344 4864 8.891671 AAAGTTACCATGTTTCGTCTAAGTAA 57.108 30.769 0.00 0.00 0.00 2.24
4345 4865 8.767085 CAAAAGTTACCATGTTTCGTCTAAGTA 58.233 33.333 0.00 0.00 0.00 2.24
4346 4866 7.496591 TCAAAAGTTACCATGTTTCGTCTAAGT 59.503 33.333 0.00 0.00 0.00 2.24
4347 4867 7.857569 TCAAAAGTTACCATGTTTCGTCTAAG 58.142 34.615 0.00 0.00 0.00 2.18
4348 4868 7.519328 GCTCAAAAGTTACCATGTTTCGTCTAA 60.519 37.037 0.00 0.00 0.00 2.10
4349 4869 6.073440 GCTCAAAAGTTACCATGTTTCGTCTA 60.073 38.462 0.00 0.00 0.00 2.59
4350 4870 5.277828 GCTCAAAAGTTACCATGTTTCGTCT 60.278 40.000 0.00 0.00 0.00 4.18
4351 4871 4.909880 GCTCAAAAGTTACCATGTTTCGTC 59.090 41.667 0.00 0.00 0.00 4.20
4352 4872 4.261447 GGCTCAAAAGTTACCATGTTTCGT 60.261 41.667 0.00 0.00 0.00 3.85
4353 4873 4.226761 GGCTCAAAAGTTACCATGTTTCG 58.773 43.478 0.00 0.00 0.00 3.46
4354 4874 4.226761 CGGCTCAAAAGTTACCATGTTTC 58.773 43.478 0.00 0.00 0.00 2.78
4355 4875 3.005367 CCGGCTCAAAAGTTACCATGTTT 59.995 43.478 0.00 0.00 0.00 2.83
4356 4876 2.556622 CCGGCTCAAAAGTTACCATGTT 59.443 45.455 0.00 0.00 0.00 2.71
4357 4877 2.159382 CCGGCTCAAAAGTTACCATGT 58.841 47.619 0.00 0.00 0.00 3.21
4358 4878 2.420022 CTCCGGCTCAAAAGTTACCATG 59.580 50.000 0.00 0.00 0.00 3.66
4359 4879 2.304761 TCTCCGGCTCAAAAGTTACCAT 59.695 45.455 0.00 0.00 0.00 3.55
4360 4880 1.695242 TCTCCGGCTCAAAAGTTACCA 59.305 47.619 0.00 0.00 0.00 3.25
4361 4881 2.467566 TCTCCGGCTCAAAAGTTACC 57.532 50.000 0.00 0.00 0.00 2.85
4362 4882 5.372547 AAAATCTCCGGCTCAAAAGTTAC 57.627 39.130 0.00 0.00 0.00 2.50
4364 4884 4.937201 AAAAATCTCCGGCTCAAAAGTT 57.063 36.364 0.00 0.00 0.00 2.66
4401 4921 9.760077 AAGTTATTTATACATGAGTTACCGGAG 57.240 33.333 9.46 0.00 0.00 4.63
4402 4922 9.537192 CAAGTTATTTATACATGAGTTACCGGA 57.463 33.333 9.46 0.00 0.00 5.14
4403 4923 8.770828 CCAAGTTATTTATACATGAGTTACCGG 58.229 37.037 0.00 0.00 0.00 5.28
4404 4924 9.321562 ACCAAGTTATTTATACATGAGTTACCG 57.678 33.333 0.00 0.00 0.00 4.02
4423 4943 9.359653 AGGTCTATTGTACGTATATACCAAGTT 57.640 33.333 17.32 0.00 30.89 2.66
4424 4944 8.790718 CAGGTCTATTGTACGTATATACCAAGT 58.209 37.037 17.32 2.65 30.89 3.16
4425 4945 9.006839 TCAGGTCTATTGTACGTATATACCAAG 57.993 37.037 17.32 12.27 30.89 3.61
4426 4946 8.922931 TCAGGTCTATTGTACGTATATACCAA 57.077 34.615 17.32 6.43 30.89 3.67
4439 4959 9.780186 GGCTAAATAAGTTATCAGGTCTATTGT 57.220 33.333 0.00 0.00 0.00 2.71
4444 4964 8.862085 GTCTAGGCTAAATAAGTTATCAGGTCT 58.138 37.037 0.00 0.00 0.00 3.85
4445 4965 7.808856 CGTCTAGGCTAAATAAGTTATCAGGTC 59.191 40.741 0.00 0.00 0.00 3.85
4446 4966 7.287235 ACGTCTAGGCTAAATAAGTTATCAGGT 59.713 37.037 0.00 0.00 0.00 4.00
4447 4967 7.595502 CACGTCTAGGCTAAATAAGTTATCAGG 59.404 40.741 0.00 0.00 0.00 3.86
4448 4968 8.350722 TCACGTCTAGGCTAAATAAGTTATCAG 58.649 37.037 0.00 0.00 0.00 2.90
4449 4969 8.229253 TCACGTCTAGGCTAAATAAGTTATCA 57.771 34.615 0.00 0.00 0.00 2.15
4452 4972 9.956720 GTTATCACGTCTAGGCTAAATAAGTTA 57.043 33.333 0.00 0.00 0.00 2.24
4453 4973 8.693625 AGTTATCACGTCTAGGCTAAATAAGTT 58.306 33.333 0.00 0.00 0.00 2.66
4454 4974 8.235359 AGTTATCACGTCTAGGCTAAATAAGT 57.765 34.615 0.00 0.00 0.00 2.24
4455 4975 9.530633 AAAGTTATCACGTCTAGGCTAAATAAG 57.469 33.333 0.00 0.00 0.00 1.73
4456 4976 9.525409 GAAAGTTATCACGTCTAGGCTAAATAA 57.475 33.333 0.00 0.00 0.00 1.40
4457 4977 8.910944 AGAAAGTTATCACGTCTAGGCTAAATA 58.089 33.333 0.00 0.00 0.00 1.40
4458 4978 7.783042 AGAAAGTTATCACGTCTAGGCTAAAT 58.217 34.615 0.00 0.00 0.00 1.40
4459 4979 7.166691 AGAAAGTTATCACGTCTAGGCTAAA 57.833 36.000 0.00 0.00 0.00 1.85
4460 4980 6.770746 AGAAAGTTATCACGTCTAGGCTAA 57.229 37.500 0.00 0.00 0.00 3.09
4461 4981 6.602406 AGAAGAAAGTTATCACGTCTAGGCTA 59.398 38.462 0.00 0.00 0.00 3.93
4462 4982 5.419471 AGAAGAAAGTTATCACGTCTAGGCT 59.581 40.000 0.00 0.00 0.00 4.58
4463 4983 5.652518 AGAAGAAAGTTATCACGTCTAGGC 58.347 41.667 0.00 0.00 0.00 3.93
4464 4984 6.095720 AGGAGAAGAAAGTTATCACGTCTAGG 59.904 42.308 0.00 0.00 0.00 3.02
4465 4985 6.970043 CAGGAGAAGAAAGTTATCACGTCTAG 59.030 42.308 0.00 0.00 0.00 2.43
4466 4986 6.127703 CCAGGAGAAGAAAGTTATCACGTCTA 60.128 42.308 0.00 0.00 0.00 2.59
4467 4987 5.336849 CCAGGAGAAGAAAGTTATCACGTCT 60.337 44.000 0.00 0.00 0.00 4.18
4468 4988 4.865365 CCAGGAGAAGAAAGTTATCACGTC 59.135 45.833 0.00 0.00 0.00 4.34
4469 4989 4.527038 TCCAGGAGAAGAAAGTTATCACGT 59.473 41.667 0.00 0.00 0.00 4.49
4470 4990 5.073311 TCCAGGAGAAGAAAGTTATCACG 57.927 43.478 0.00 0.00 0.00 4.35
4471 4991 7.929941 AAATCCAGGAGAAGAAAGTTATCAC 57.070 36.000 0.00 0.00 0.00 3.06
4472 4992 8.940397 AAAAATCCAGGAGAAGAAAGTTATCA 57.060 30.769 0.00 0.00 0.00 2.15
4527 5047 5.465935 CCACAATTACCATGGTGTTTACAC 58.534 41.667 28.17 4.43 45.72 2.90
4528 5048 4.524714 CCCACAATTACCATGGTGTTTACA 59.475 41.667 28.17 2.64 0.00 2.41
4529 5049 4.619628 GCCCACAATTACCATGGTGTTTAC 60.620 45.833 28.17 4.28 0.00 2.01
4530 5050 3.511934 GCCCACAATTACCATGGTGTTTA 59.488 43.478 28.17 10.25 0.00 2.01
4531 5051 2.301583 GCCCACAATTACCATGGTGTTT 59.698 45.455 28.17 16.98 0.00 2.83
4532 5052 1.899142 GCCCACAATTACCATGGTGTT 59.101 47.619 28.17 18.32 0.00 3.32
4533 5053 1.555967 GCCCACAATTACCATGGTGT 58.444 50.000 28.17 13.83 0.00 4.16
4534 5054 0.823460 GGCCCACAATTACCATGGTG 59.177 55.000 28.17 13.11 0.00 4.17
4535 5055 0.682855 CGGCCCACAATTACCATGGT 60.683 55.000 23.55 23.55 0.00 3.55
4536 5056 0.395036 TCGGCCCACAATTACCATGG 60.395 55.000 11.19 11.19 0.00 3.66
4537 5057 1.024271 CTCGGCCCACAATTACCATG 58.976 55.000 0.00 0.00 0.00 3.66
4538 5058 0.916086 TCTCGGCCCACAATTACCAT 59.084 50.000 0.00 0.00 0.00 3.55
4539 5059 0.916086 ATCTCGGCCCACAATTACCA 59.084 50.000 0.00 0.00 0.00 3.25
4540 5060 2.052782 AATCTCGGCCCACAATTACC 57.947 50.000 0.00 0.00 0.00 2.85
4541 5061 3.805207 AGTAATCTCGGCCCACAATTAC 58.195 45.455 13.26 13.26 34.51 1.89
4542 5062 4.497291 AAGTAATCTCGGCCCACAATTA 57.503 40.909 0.00 0.00 0.00 1.40
4543 5063 3.366052 AAGTAATCTCGGCCCACAATT 57.634 42.857 0.00 0.00 0.00 2.32
4544 5064 3.366052 AAAGTAATCTCGGCCCACAAT 57.634 42.857 0.00 0.00 0.00 2.71
4545 5065 2.871096 AAAGTAATCTCGGCCCACAA 57.129 45.000 0.00 0.00 0.00 3.33
4546 5066 2.871096 AAAAGTAATCTCGGCCCACA 57.129 45.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.