Multiple sequence alignment - TraesCS2D01G193200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G193200 chr2D 100.000 2816 0 0 1 2816 138161839 138164654 0.000000e+00 5201.0
1 TraesCS2D01G193200 chr2D 94.872 39 2 0 1 39 547616582 547616544 8.420000e-06 62.1
2 TraesCS2D01G193200 chr2B 93.725 1753 68 21 503 2229 196010863 196012599 0.000000e+00 2590.0
3 TraesCS2D01G193200 chr2A 92.557 1760 71 22 508 2229 163855966 163854229 0.000000e+00 2470.0
4 TraesCS2D01G193200 chr2A 88.889 126 11 1 52 177 677857915 677857793 4.860000e-33 152.0
5 TraesCS2D01G193200 chr2A 89.167 120 13 0 52 171 581562509 581562628 1.750000e-32 150.0
6 TraesCS2D01G193200 chr2A 92.500 40 2 1 1 40 710468856 710468894 3.920000e-04 56.5
7 TraesCS2D01G193200 chr3A 92.580 566 28 3 2248 2811 699320744 699321297 0.000000e+00 800.0
8 TraesCS2D01G193200 chr3D 91.944 571 31 5 2248 2816 564565305 564565862 0.000000e+00 785.0
9 TraesCS2D01G193200 chr3D 93.077 130 9 0 171 300 609318705 609318834 1.030000e-44 191.0
10 TraesCS2D01G193200 chr3D 91.228 114 10 0 64 177 79589117 79589230 3.760000e-34 156.0
11 TraesCS2D01G193200 chr3D 79.570 186 37 1 317 502 20337089 20336905 6.330000e-27 132.0
12 TraesCS2D01G193200 chr7D 95.258 485 15 2 2248 2732 393116853 393117329 0.000000e+00 761.0
13 TraesCS2D01G193200 chr7D 97.458 118 3 0 172 289 69051929 69052046 4.760000e-48 202.0
14 TraesCS2D01G193200 chr7D 97.143 105 3 0 2712 2816 393118079 393118183 8.020000e-41 178.0
15 TraesCS2D01G193200 chr7D 90.833 120 11 0 58 177 420752248 420752129 8.070000e-36 161.0
16 TraesCS2D01G193200 chr7D 95.000 40 2 0 1 40 459383491 459383452 2.340000e-06 63.9
17 TraesCS2D01G193200 chr7D 97.059 34 1 0 1 34 204437146 204437179 1.090000e-04 58.4
18 TraesCS2D01G193200 chr7D 97.059 34 1 0 1 34 413509750 413509717 1.090000e-04 58.4
19 TraesCS2D01G193200 chr6B 87.179 468 39 8 1118 1576 492822288 492821833 1.930000e-141 512.0
20 TraesCS2D01G193200 chr6B 96.694 121 4 0 171 291 50465000 50465120 4.760000e-48 202.0
21 TraesCS2D01G193200 chr6B 95.833 120 4 1 177 295 84936256 84936137 2.860000e-45 193.0
22 TraesCS2D01G193200 chr6B 92.500 120 9 0 52 171 716457604 716457485 3.730000e-39 172.0
23 TraesCS2D01G193200 chr4B 93.195 338 14 4 2396 2731 137737232 137736902 3.260000e-134 488.0
24 TraesCS2D01G193200 chr4B 96.667 90 3 0 2723 2812 137735758 137735669 1.750000e-32 150.0
25 TraesCS2D01G193200 chr4A 85.407 418 36 12 2248 2651 374478362 374477956 7.260000e-111 411.0
26 TraesCS2D01G193200 chr4A 95.868 121 5 0 171 291 524418546 524418666 2.210000e-46 196.0
27 TraesCS2D01G193200 chr4A 97.391 115 3 0 177 291 707882655 707882541 2.210000e-46 196.0
28 TraesCS2D01G193200 chr4A 87.302 126 13 1 52 177 4495315 4495193 1.050000e-29 141.0
29 TraesCS2D01G193200 chr5A 86.139 303 19 10 2248 2540 606462432 606462721 3.520000e-79 305.0
30 TraesCS2D01G193200 chr5A 83.417 199 13 4 2618 2810 606462744 606462928 1.740000e-37 167.0
31 TraesCS2D01G193200 chr7B 95.868 121 5 0 171 291 647795150 647795270 2.210000e-46 196.0
32 TraesCS2D01G193200 chr7A 97.391 115 3 0 177 291 182650786 182650672 2.210000e-46 196.0
33 TraesCS2D01G193200 chr7A 100.000 32 0 0 3 34 182686541 182686510 3.030000e-05 60.2
34 TraesCS2D01G193200 chr5B 95.868 121 5 0 171 291 264942800 264942920 2.210000e-46 196.0
35 TraesCS2D01G193200 chr5B 86.822 129 12 1 54 177 458034534 458034406 3.780000e-29 139.0
36 TraesCS2D01G193200 chr5B 83.969 131 16 3 52 177 584262840 584262970 1.370000e-23 121.0
37 TraesCS2D01G193200 chr1B 88.095 126 15 0 52 177 142095146 142095271 1.750000e-32 150.0
38 TraesCS2D01G193200 chr1B 97.059 34 1 0 1 34 625170487 625170520 1.090000e-04 58.4
39 TraesCS2D01G193200 chr1B 97.059 34 1 0 1 34 639453513 639453480 1.090000e-04 58.4
40 TraesCS2D01G193200 chr5D 87.302 126 16 0 52 177 424060959 424061084 8.130000e-31 145.0
41 TraesCS2D01G193200 chr5D 85.714 126 15 2 52 177 479101227 479101349 2.280000e-26 130.0
42 TraesCS2D01G193200 chr1A 97.059 34 1 0 1 34 497046695 497046728 1.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G193200 chr2D 138161839 138164654 2815 False 5201.0 5201 100.0000 1 2816 1 chr2D.!!$F1 2815
1 TraesCS2D01G193200 chr2B 196010863 196012599 1736 False 2590.0 2590 93.7250 503 2229 1 chr2B.!!$F1 1726
2 TraesCS2D01G193200 chr2A 163854229 163855966 1737 True 2470.0 2470 92.5570 508 2229 1 chr2A.!!$R1 1721
3 TraesCS2D01G193200 chr3A 699320744 699321297 553 False 800.0 800 92.5800 2248 2811 1 chr3A.!!$F1 563
4 TraesCS2D01G193200 chr3D 564565305 564565862 557 False 785.0 785 91.9440 2248 2816 1 chr3D.!!$F2 568
5 TraesCS2D01G193200 chr7D 393116853 393118183 1330 False 469.5 761 96.2005 2248 2816 2 chr7D.!!$F3 568
6 TraesCS2D01G193200 chr4B 137735669 137737232 1563 True 319.0 488 94.9310 2396 2812 2 chr4B.!!$R1 416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 586 0.030504 TCGGTTCTTGTGTACGCGAA 59.969 50.0 15.93 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 2233 1.131315 TGAGAGCGTCAGTCGAGAATG 59.869 52.381 0.0 0.0 42.86 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.492090 AGAGAGACATCCACGCGC 59.508 61.111 5.73 0.00 0.00 6.86
18 19 2.951745 GAGAGACATCCACGCGCG 60.952 66.667 30.96 30.96 0.00 6.86
36 37 3.878519 CTCCTCCTCCGACGCGAC 61.879 72.222 15.93 5.54 0.00 5.19
54 55 3.508840 GCGGGTTGCGAGAATGGG 61.509 66.667 0.00 0.00 0.00 4.00
55 56 2.824041 CGGGTTGCGAGAATGGGG 60.824 66.667 0.00 0.00 0.00 4.96
56 57 2.674754 GGGTTGCGAGAATGGGGA 59.325 61.111 0.00 0.00 0.00 4.81
57 58 1.452108 GGGTTGCGAGAATGGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
58 59 2.115291 GGTTGCGAGAATGGGGAGC 61.115 63.158 0.00 0.00 0.00 4.70
59 60 2.125147 TTGCGAGAATGGGGAGCG 60.125 61.111 0.00 0.00 0.00 5.03
61 62 4.537433 GCGAGAATGGGGAGCGCT 62.537 66.667 11.27 11.27 43.85 5.92
62 63 2.279784 CGAGAATGGGGAGCGCTC 60.280 66.667 29.38 29.38 0.00 5.03
63 64 2.903357 GAGAATGGGGAGCGCTCA 59.097 61.111 36.27 19.46 0.00 4.26
64 65 1.227497 GAGAATGGGGAGCGCTCAG 60.227 63.158 36.27 0.00 0.00 3.35
76 77 2.485582 GCTCAGCGCGACTACTGA 59.514 61.111 12.10 12.40 40.54 3.41
77 78 1.870016 GCTCAGCGCGACTACTGAC 60.870 63.158 12.10 4.47 37.99 3.51
78 79 1.797441 CTCAGCGCGACTACTGACT 59.203 57.895 12.10 0.00 37.99 3.41
79 80 0.169230 CTCAGCGCGACTACTGACTT 59.831 55.000 12.10 0.00 37.99 3.01
80 81 0.168348 TCAGCGCGACTACTGACTTC 59.832 55.000 12.10 0.00 37.99 3.01
81 82 0.169230 CAGCGCGACTACTGACTTCT 59.831 55.000 12.10 0.00 35.90 2.85
82 83 0.882474 AGCGCGACTACTGACTTCTT 59.118 50.000 12.10 0.00 0.00 2.52
83 84 1.135632 AGCGCGACTACTGACTTCTTC 60.136 52.381 12.10 0.00 0.00 2.87
84 85 1.525596 CGCGACTACTGACTTCTTCG 58.474 55.000 0.00 0.00 0.00 3.79
85 86 1.136029 CGCGACTACTGACTTCTTCGT 60.136 52.381 0.00 0.00 0.00 3.85
86 87 2.507866 GCGACTACTGACTTCTTCGTC 58.492 52.381 0.00 0.00 34.52 4.20
87 88 2.095869 GCGACTACTGACTTCTTCGTCA 60.096 50.000 0.00 0.00 41.33 4.35
88 89 3.480894 CGACTACTGACTTCTTCGTCAC 58.519 50.000 0.00 0.00 38.89 3.67
89 90 3.480894 GACTACTGACTTCTTCGTCACG 58.519 50.000 0.00 0.00 38.89 4.35
90 91 2.225963 ACTACTGACTTCTTCGTCACGG 59.774 50.000 0.00 0.00 38.89 4.94
91 92 1.315690 ACTGACTTCTTCGTCACGGA 58.684 50.000 0.00 0.00 38.89 4.69
92 93 1.001597 ACTGACTTCTTCGTCACGGAC 60.002 52.381 0.00 0.00 38.89 4.79
115 116 2.949106 GGACTCCGACGTCGACAA 59.051 61.111 37.65 21.12 43.02 3.18
116 117 1.441682 GGACTCCGACGTCGACAAC 60.442 63.158 37.65 23.66 43.02 3.32
117 118 1.441682 GACTCCGACGTCGACAACC 60.442 63.158 37.65 18.41 43.02 3.77
118 119 1.849976 GACTCCGACGTCGACAACCT 61.850 60.000 37.65 14.06 43.02 3.50
119 120 1.154263 CTCCGACGTCGACAACCTC 60.154 63.158 37.65 3.09 43.02 3.85
120 121 2.126580 CCGACGTCGACAACCTCC 60.127 66.667 37.65 0.00 43.02 4.30
121 122 2.623915 CCGACGTCGACAACCTCCT 61.624 63.158 37.65 0.00 43.02 3.69
122 123 1.154263 CGACGTCGACAACCTCCTC 60.154 63.158 33.35 0.00 43.02 3.71
123 124 1.154263 GACGTCGACAACCTCCTCG 60.154 63.158 17.16 0.08 0.00 4.63
124 125 1.572085 GACGTCGACAACCTCCTCGA 61.572 60.000 17.16 0.00 36.58 4.04
125 126 0.959372 ACGTCGACAACCTCCTCGAT 60.959 55.000 17.16 0.00 40.81 3.59
126 127 0.523546 CGTCGACAACCTCCTCGATG 60.524 60.000 17.16 0.00 40.81 3.84
127 128 0.809385 GTCGACAACCTCCTCGATGA 59.191 55.000 11.55 0.00 40.81 2.92
128 129 0.809385 TCGACAACCTCCTCGATGAC 59.191 55.000 0.00 0.00 34.04 3.06
129 130 0.526211 CGACAACCTCCTCGATGACA 59.474 55.000 0.00 0.00 31.24 3.58
130 131 1.135139 CGACAACCTCCTCGATGACAT 59.865 52.381 0.00 0.00 31.24 3.06
131 132 2.544685 GACAACCTCCTCGATGACATG 58.455 52.381 0.00 0.00 0.00 3.21
132 133 1.208052 ACAACCTCCTCGATGACATGG 59.792 52.381 0.00 0.00 0.00 3.66
133 134 0.179000 AACCTCCTCGATGACATGGC 59.821 55.000 0.00 0.00 0.00 4.40
134 135 0.689080 ACCTCCTCGATGACATGGCT 60.689 55.000 0.00 0.00 0.00 4.75
135 136 0.249784 CCTCCTCGATGACATGGCTG 60.250 60.000 0.00 0.00 0.00 4.85
136 137 0.749049 CTCCTCGATGACATGGCTGA 59.251 55.000 0.00 0.00 0.00 4.26
137 138 0.461548 TCCTCGATGACATGGCTGAC 59.538 55.000 0.00 0.00 0.00 3.51
138 139 0.176449 CCTCGATGACATGGCTGACA 59.824 55.000 0.00 0.00 0.00 3.58
139 140 1.405933 CCTCGATGACATGGCTGACAA 60.406 52.381 0.00 0.00 31.03 3.18
140 141 1.931841 CTCGATGACATGGCTGACAAG 59.068 52.381 0.00 0.00 31.03 3.16
141 142 1.012086 CGATGACATGGCTGACAAGG 58.988 55.000 0.00 0.00 31.03 3.61
142 143 1.405933 CGATGACATGGCTGACAAGGA 60.406 52.381 0.00 0.00 31.03 3.36
143 144 2.012673 GATGACATGGCTGACAAGGAC 58.987 52.381 0.00 0.00 31.03 3.85
144 145 0.764271 TGACATGGCTGACAAGGACA 59.236 50.000 0.00 0.00 0.00 4.02
145 146 1.160137 GACATGGCTGACAAGGACAC 58.840 55.000 0.00 0.00 0.00 3.67
146 147 0.250901 ACATGGCTGACAAGGACACC 60.251 55.000 0.00 0.00 0.00 4.16
147 148 1.003355 ATGGCTGACAAGGACACCG 60.003 57.895 0.00 0.00 0.00 4.94
148 149 1.480212 ATGGCTGACAAGGACACCGA 61.480 55.000 0.00 0.00 0.00 4.69
149 150 1.668151 GGCTGACAAGGACACCGAC 60.668 63.158 0.00 0.00 0.00 4.79
150 151 1.668151 GCTGACAAGGACACCGACC 60.668 63.158 0.00 0.00 0.00 4.79
151 152 1.004918 CTGACAAGGACACCGACCC 60.005 63.158 0.00 0.00 0.00 4.46
152 153 2.346365 GACAAGGACACCGACCCC 59.654 66.667 0.00 0.00 0.00 4.95
153 154 2.446994 ACAAGGACACCGACCCCA 60.447 61.111 0.00 0.00 0.00 4.96
154 155 2.047213 GACAAGGACACCGACCCCAA 62.047 60.000 0.00 0.00 0.00 4.12
155 156 1.302511 CAAGGACACCGACCCCAAG 60.303 63.158 0.00 0.00 0.00 3.61
156 157 1.768888 AAGGACACCGACCCCAAGT 60.769 57.895 0.00 0.00 0.00 3.16
157 158 1.765597 AAGGACACCGACCCCAAGTC 61.766 60.000 0.00 0.00 42.54 3.01
158 159 2.346365 GACACCGACCCCAAGTCC 59.654 66.667 0.00 0.00 43.08 3.85
159 160 2.446994 ACACCGACCCCAAGTCCA 60.447 61.111 0.00 0.00 43.08 4.02
160 161 2.347490 CACCGACCCCAAGTCCAG 59.653 66.667 0.00 0.00 43.08 3.86
161 162 3.637273 ACCGACCCCAAGTCCAGC 61.637 66.667 0.00 0.00 43.08 4.85
162 163 4.760047 CCGACCCCAAGTCCAGCG 62.760 72.222 0.00 0.00 43.08 5.18
164 165 4.021925 GACCCCAAGTCCAGCGCT 62.022 66.667 2.64 2.64 39.84 5.92
165 166 3.553095 GACCCCAAGTCCAGCGCTT 62.553 63.158 7.50 0.00 39.84 4.68
166 167 2.747855 CCCCAAGTCCAGCGCTTC 60.748 66.667 7.50 0.75 0.00 3.86
167 168 2.348998 CCCAAGTCCAGCGCTTCT 59.651 61.111 7.50 3.60 0.00 2.85
168 169 2.037136 CCCAAGTCCAGCGCTTCTG 61.037 63.158 7.50 0.00 42.49 3.02
169 170 2.684843 CCAAGTCCAGCGCTTCTGC 61.685 63.158 7.50 0.00 41.50 4.26
176 177 4.701290 AGCGCTTCTGCTGCTGCT 62.701 61.111 17.00 0.00 45.28 4.24
177 178 3.735029 GCGCTTCTGCTGCTGCTT 61.735 61.111 17.00 0.00 40.48 3.91
178 179 2.393768 GCGCTTCTGCTGCTGCTTA 61.394 57.895 17.00 1.80 40.48 3.09
179 180 1.423056 CGCTTCTGCTGCTGCTTAC 59.577 57.895 17.00 1.47 40.48 2.34
180 181 1.799383 GCTTCTGCTGCTGCTTACC 59.201 57.895 17.00 0.00 40.48 2.85
181 182 0.676151 GCTTCTGCTGCTGCTTACCT 60.676 55.000 17.00 0.00 40.48 3.08
182 183 1.818642 CTTCTGCTGCTGCTTACCTT 58.181 50.000 17.00 0.00 40.48 3.50
183 184 1.736681 CTTCTGCTGCTGCTTACCTTC 59.263 52.381 17.00 0.00 40.48 3.46
184 185 0.979665 TCTGCTGCTGCTTACCTTCT 59.020 50.000 17.00 0.00 40.48 2.85
185 186 1.066573 TCTGCTGCTGCTTACCTTCTC 60.067 52.381 17.00 0.00 40.48 2.87
186 187 0.979665 TGCTGCTGCTTACCTTCTCT 59.020 50.000 17.00 0.00 40.48 3.10
187 188 1.349026 TGCTGCTGCTTACCTTCTCTT 59.651 47.619 17.00 0.00 40.48 2.85
188 189 2.224621 TGCTGCTGCTTACCTTCTCTTT 60.225 45.455 17.00 0.00 40.48 2.52
189 190 2.161211 GCTGCTGCTTACCTTCTCTTTG 59.839 50.000 8.53 0.00 36.03 2.77
190 191 3.406764 CTGCTGCTTACCTTCTCTTTGT 58.593 45.455 0.00 0.00 0.00 2.83
191 192 3.403038 TGCTGCTTACCTTCTCTTTGTC 58.597 45.455 0.00 0.00 0.00 3.18
192 193 3.181455 TGCTGCTTACCTTCTCTTTGTCA 60.181 43.478 0.00 0.00 0.00 3.58
193 194 3.815401 GCTGCTTACCTTCTCTTTGTCAA 59.185 43.478 0.00 0.00 0.00 3.18
194 195 4.275936 GCTGCTTACCTTCTCTTTGTCAAA 59.724 41.667 0.00 0.00 0.00 2.69
195 196 5.048434 GCTGCTTACCTTCTCTTTGTCAAAT 60.048 40.000 0.00 0.00 0.00 2.32
196 197 6.515696 GCTGCTTACCTTCTCTTTGTCAAATT 60.516 38.462 0.00 0.00 0.00 1.82
197 198 6.738114 TGCTTACCTTCTCTTTGTCAAATTG 58.262 36.000 0.00 0.00 0.00 2.32
198 199 5.631096 GCTTACCTTCTCTTTGTCAAATTGC 59.369 40.000 0.00 0.00 0.00 3.56
199 200 6.707440 TTACCTTCTCTTTGTCAAATTGCA 57.293 33.333 0.00 0.00 0.00 4.08
200 201 5.796424 ACCTTCTCTTTGTCAAATTGCAT 57.204 34.783 0.00 0.00 0.00 3.96
201 202 5.535333 ACCTTCTCTTTGTCAAATTGCATG 58.465 37.500 0.00 0.00 0.00 4.06
202 203 5.302568 ACCTTCTCTTTGTCAAATTGCATGA 59.697 36.000 0.00 0.00 0.00 3.07
203 204 5.632347 CCTTCTCTTTGTCAAATTGCATGAC 59.368 40.000 11.24 11.24 45.82 3.06
204 205 6.395426 TTCTCTTTGTCAAATTGCATGACT 57.605 33.333 17.40 0.00 45.81 3.41
205 206 6.395426 TCTCTTTGTCAAATTGCATGACTT 57.605 33.333 17.40 0.00 45.81 3.01
206 207 6.210796 TCTCTTTGTCAAATTGCATGACTTG 58.789 36.000 17.40 9.20 45.81 3.16
207 208 5.904941 TCTTTGTCAAATTGCATGACTTGT 58.095 33.333 17.40 0.00 45.81 3.16
208 209 6.339730 TCTTTGTCAAATTGCATGACTTGTT 58.660 32.000 17.40 0.00 45.81 2.83
209 210 6.817641 TCTTTGTCAAATTGCATGACTTGTTT 59.182 30.769 17.40 0.00 45.81 2.83
210 211 6.981762 TTGTCAAATTGCATGACTTGTTTT 57.018 29.167 17.40 0.00 45.81 2.43
211 212 8.484641 TTTGTCAAATTGCATGACTTGTTTTA 57.515 26.923 17.40 0.00 45.81 1.52
212 213 8.659925 TTGTCAAATTGCATGACTTGTTTTAT 57.340 26.923 17.40 0.00 45.81 1.40
213 214 8.296799 TGTCAAATTGCATGACTTGTTTTATC 57.703 30.769 17.40 0.00 45.81 1.75
214 215 7.924947 TGTCAAATTGCATGACTTGTTTTATCA 59.075 29.630 17.40 0.00 45.81 2.15
215 216 8.216453 GTCAAATTGCATGACTTGTTTTATCAC 58.784 33.333 10.94 0.00 43.03 3.06
216 217 8.143193 TCAAATTGCATGACTTGTTTTATCACT 58.857 29.630 0.00 0.00 0.00 3.41
217 218 7.878477 AATTGCATGACTTGTTTTATCACTG 57.122 32.000 0.00 0.00 0.00 3.66
218 219 4.797471 TGCATGACTTGTTTTATCACTGC 58.203 39.130 0.00 0.00 32.37 4.40
219 220 4.520111 TGCATGACTTGTTTTATCACTGCT 59.480 37.500 0.00 0.00 32.68 4.24
220 221 5.704978 TGCATGACTTGTTTTATCACTGCTA 59.295 36.000 0.00 0.00 32.68 3.49
221 222 6.375174 TGCATGACTTGTTTTATCACTGCTAT 59.625 34.615 0.00 0.00 32.68 2.97
222 223 7.552330 TGCATGACTTGTTTTATCACTGCTATA 59.448 33.333 0.00 0.00 32.68 1.31
223 224 7.852945 GCATGACTTGTTTTATCACTGCTATAC 59.147 37.037 0.00 0.00 30.71 1.47
224 225 9.102757 CATGACTTGTTTTATCACTGCTATACT 57.897 33.333 0.00 0.00 0.00 2.12
226 227 9.803315 TGACTTGTTTTATCACTGCTATACTAG 57.197 33.333 0.00 0.00 0.00 2.57
227 228 9.804758 GACTTGTTTTATCACTGCTATACTAGT 57.195 33.333 0.00 0.00 0.00 2.57
228 229 9.804758 ACTTGTTTTATCACTGCTATACTAGTC 57.195 33.333 0.00 0.00 0.00 2.59
229 230 9.803315 CTTGTTTTATCACTGCTATACTAGTCA 57.197 33.333 0.00 0.00 0.00 3.41
231 232 9.750125 TGTTTTATCACTGCTATACTAGTCATG 57.250 33.333 0.00 0.00 0.00 3.07
232 233 8.704234 GTTTTATCACTGCTATACTAGTCATGC 58.296 37.037 0.00 2.68 0.00 4.06
233 234 7.767250 TTATCACTGCTATACTAGTCATGCT 57.233 36.000 0.00 0.00 0.00 3.79
234 235 6.662865 ATCACTGCTATACTAGTCATGCTT 57.337 37.500 0.00 0.00 0.00 3.91
235 236 6.471233 TCACTGCTATACTAGTCATGCTTT 57.529 37.500 0.00 0.00 0.00 3.51
236 237 7.582667 TCACTGCTATACTAGTCATGCTTTA 57.417 36.000 0.00 0.00 0.00 1.85
237 238 8.183104 TCACTGCTATACTAGTCATGCTTTAT 57.817 34.615 0.00 0.00 0.00 1.40
238 239 8.300286 TCACTGCTATACTAGTCATGCTTTATC 58.700 37.037 0.00 0.00 0.00 1.75
239 240 8.303156 CACTGCTATACTAGTCATGCTTTATCT 58.697 37.037 0.00 0.00 0.00 1.98
240 241 9.521841 ACTGCTATACTAGTCATGCTTTATCTA 57.478 33.333 0.00 0.00 0.00 1.98
283 284 9.683069 AATCATTCGGTAAATTGCTCATATTTC 57.317 29.630 0.00 0.00 0.00 2.17
284 285 7.648142 TCATTCGGTAAATTGCTCATATTTCC 58.352 34.615 0.00 0.00 0.00 3.13
285 286 7.284261 TCATTCGGTAAATTGCTCATATTTCCA 59.716 33.333 0.00 0.00 0.00 3.53
286 287 7.397892 TTCGGTAAATTGCTCATATTTCCAA 57.602 32.000 0.00 0.00 0.00 3.53
287 288 6.791303 TCGGTAAATTGCTCATATTTCCAAC 58.209 36.000 0.00 0.00 0.00 3.77
288 289 6.375736 TCGGTAAATTGCTCATATTTCCAACA 59.624 34.615 0.00 0.00 0.00 3.33
289 290 7.032580 CGGTAAATTGCTCATATTTCCAACAA 58.967 34.615 0.00 0.00 0.00 2.83
290 291 7.706179 CGGTAAATTGCTCATATTTCCAACAAT 59.294 33.333 0.00 0.00 0.00 2.71
291 292 9.382275 GGTAAATTGCTCATATTTCCAACAATT 57.618 29.630 0.00 0.00 37.73 2.32
304 305 3.030668 CAACAATTTGGGGCTCAAGTC 57.969 47.619 0.00 0.00 36.62 3.01
305 306 1.247567 ACAATTTGGGGCTCAAGTCG 58.752 50.000 0.00 0.00 36.62 4.18
306 307 1.202879 ACAATTTGGGGCTCAAGTCGA 60.203 47.619 0.00 0.00 36.62 4.20
307 308 1.200020 CAATTTGGGGCTCAAGTCGAC 59.800 52.381 7.70 7.70 36.62 4.20
308 309 0.673644 ATTTGGGGCTCAAGTCGACG 60.674 55.000 10.46 0.00 36.62 5.12
309 310 1.750341 TTTGGGGCTCAAGTCGACGA 61.750 55.000 10.46 1.09 36.62 4.20
310 311 2.154798 TTGGGGCTCAAGTCGACGAG 62.155 60.000 10.46 12.64 0.00 4.18
311 312 2.637383 GGGGCTCAAGTCGACGAGT 61.637 63.158 18.03 0.00 0.00 4.18
312 313 1.289380 GGGCTCAAGTCGACGAGTT 59.711 57.895 18.03 12.13 0.00 3.01
313 314 0.733223 GGGCTCAAGTCGACGAGTTC 60.733 60.000 14.91 4.68 0.00 3.01
314 315 0.733223 GGCTCAAGTCGACGAGTTCC 60.733 60.000 14.91 9.97 0.00 3.62
315 316 0.733223 GCTCAAGTCGACGAGTTCCC 60.733 60.000 14.91 3.31 0.00 3.97
316 317 0.454620 CTCAAGTCGACGAGTTCCCG 60.455 60.000 14.91 5.07 0.00 5.14
317 318 0.886043 TCAAGTCGACGAGTTCCCGA 60.886 55.000 14.91 7.32 0.00 5.14
319 320 3.261933 GTCGACGAGTTCCCGACT 58.738 61.111 0.00 0.00 46.24 4.18
320 321 1.154263 GTCGACGAGTTCCCGACTG 60.154 63.158 0.00 0.00 46.24 3.51
321 322 1.301953 TCGACGAGTTCCCGACTGA 60.302 57.895 0.00 0.00 39.19 3.41
322 323 1.154263 CGACGAGTTCCCGACTGAC 60.154 63.158 0.00 0.00 39.19 3.51
323 324 1.575576 CGACGAGTTCCCGACTGACT 61.576 60.000 0.00 0.00 39.19 3.41
324 325 1.446907 GACGAGTTCCCGACTGACTA 58.553 55.000 0.00 0.00 39.19 2.59
325 326 1.130186 GACGAGTTCCCGACTGACTAC 59.870 57.143 0.00 0.00 39.19 2.73
326 327 1.271271 ACGAGTTCCCGACTGACTACT 60.271 52.381 0.00 0.00 39.19 2.57
327 328 2.027745 ACGAGTTCCCGACTGACTACTA 60.028 50.000 0.00 0.00 39.19 1.82
328 329 3.204526 CGAGTTCCCGACTGACTACTAT 58.795 50.000 0.00 0.00 39.19 2.12
329 330 4.141846 ACGAGTTCCCGACTGACTACTATA 60.142 45.833 0.00 0.00 39.19 1.31
330 331 4.813161 CGAGTTCCCGACTGACTACTATAA 59.187 45.833 0.00 0.00 39.19 0.98
331 332 5.277250 CGAGTTCCCGACTGACTACTATAAC 60.277 48.000 0.00 0.00 39.19 1.89
332 333 5.503927 AGTTCCCGACTGACTACTATAACA 58.496 41.667 0.00 0.00 37.17 2.41
333 334 5.948162 AGTTCCCGACTGACTACTATAACAA 59.052 40.000 0.00 0.00 37.17 2.83
334 335 6.095160 AGTTCCCGACTGACTACTATAACAAG 59.905 42.308 0.00 0.00 37.17 3.16
335 336 5.503927 TCCCGACTGACTACTATAACAAGT 58.496 41.667 0.00 0.00 0.00 3.16
336 337 5.948162 TCCCGACTGACTACTATAACAAGTT 59.052 40.000 0.00 0.00 0.00 2.66
337 338 6.435277 TCCCGACTGACTACTATAACAAGTTT 59.565 38.462 0.00 0.00 0.00 2.66
338 339 7.611467 TCCCGACTGACTACTATAACAAGTTTA 59.389 37.037 0.00 0.00 0.00 2.01
339 340 7.914346 CCCGACTGACTACTATAACAAGTTTAG 59.086 40.741 0.00 0.00 0.00 1.85
340 341 7.431668 CCGACTGACTACTATAACAAGTTTAGC 59.568 40.741 0.00 0.00 0.00 3.09
341 342 7.431668 CGACTGACTACTATAACAAGTTTAGCC 59.568 40.741 0.00 0.00 0.00 3.93
342 343 7.554211 ACTGACTACTATAACAAGTTTAGCCC 58.446 38.462 0.00 0.00 0.00 5.19
343 344 7.179694 ACTGACTACTATAACAAGTTTAGCCCA 59.820 37.037 0.00 0.00 0.00 5.36
344 345 7.909518 TGACTACTATAACAAGTTTAGCCCAA 58.090 34.615 0.00 0.00 0.00 4.12
345 346 8.377034 TGACTACTATAACAAGTTTAGCCCAAA 58.623 33.333 0.00 0.00 0.00 3.28
346 347 9.392259 GACTACTATAACAAGTTTAGCCCAAAT 57.608 33.333 0.00 0.00 0.00 2.32
347 348 9.392259 ACTACTATAACAAGTTTAGCCCAAATC 57.608 33.333 0.00 0.00 0.00 2.17
348 349 9.614792 CTACTATAACAAGTTTAGCCCAAATCT 57.385 33.333 0.00 0.00 0.00 2.40
349 350 8.281212 ACTATAACAAGTTTAGCCCAAATCTG 57.719 34.615 0.00 0.00 0.00 2.90
350 351 4.871933 AACAAGTTTAGCCCAAATCTGG 57.128 40.909 0.00 0.00 43.10 3.86
351 352 3.844640 ACAAGTTTAGCCCAAATCTGGT 58.155 40.909 0.00 0.00 41.72 4.00
352 353 3.573967 ACAAGTTTAGCCCAAATCTGGTG 59.426 43.478 0.00 0.00 41.72 4.17
353 354 3.806949 AGTTTAGCCCAAATCTGGTGA 57.193 42.857 0.00 0.00 41.72 4.02
354 355 3.690460 AGTTTAGCCCAAATCTGGTGAG 58.310 45.455 0.00 0.00 41.72 3.51
355 356 2.755103 GTTTAGCCCAAATCTGGTGAGG 59.245 50.000 0.00 0.00 41.72 3.86
356 357 0.918983 TAGCCCAAATCTGGTGAGGG 59.081 55.000 0.00 0.00 41.72 4.30
357 358 0.846427 AGCCCAAATCTGGTGAGGGA 60.846 55.000 0.00 0.00 42.25 4.20
358 359 0.394899 GCCCAAATCTGGTGAGGGAG 60.395 60.000 0.00 0.00 42.25 4.30
359 360 0.257039 CCCAAATCTGGTGAGGGAGG 59.743 60.000 0.00 0.00 42.25 4.30
360 361 0.257039 CCAAATCTGGTGAGGGAGGG 59.743 60.000 0.00 0.00 38.00 4.30
361 362 0.995024 CAAATCTGGTGAGGGAGGGT 59.005 55.000 0.00 0.00 0.00 4.34
362 363 1.065126 CAAATCTGGTGAGGGAGGGTC 60.065 57.143 0.00 0.00 0.00 4.46
363 364 0.978146 AATCTGGTGAGGGAGGGTCG 60.978 60.000 0.00 0.00 0.00 4.79
364 365 1.875422 ATCTGGTGAGGGAGGGTCGA 61.875 60.000 0.00 0.00 0.00 4.20
365 366 1.381872 CTGGTGAGGGAGGGTCGAT 60.382 63.158 0.00 0.00 0.00 3.59
366 367 1.680522 CTGGTGAGGGAGGGTCGATG 61.681 65.000 0.00 0.00 0.00 3.84
367 368 1.381327 GGTGAGGGAGGGTCGATGA 60.381 63.158 0.00 0.00 0.00 2.92
368 369 1.395826 GGTGAGGGAGGGTCGATGAG 61.396 65.000 0.00 0.00 0.00 2.90
369 370 1.075970 TGAGGGAGGGTCGATGAGG 60.076 63.158 0.00 0.00 0.00 3.86
370 371 1.834822 GAGGGAGGGTCGATGAGGG 60.835 68.421 0.00 0.00 0.00 4.30
371 372 3.551407 GGGAGGGTCGATGAGGGC 61.551 72.222 0.00 0.00 0.00 5.19
372 373 3.917760 GGAGGGTCGATGAGGGCG 61.918 72.222 0.00 0.00 0.00 6.13
373 374 3.917760 GAGGGTCGATGAGGGCGG 61.918 72.222 0.00 0.00 0.00 6.13
390 391 4.683334 GCGCGCTTTCGGTTTGCT 62.683 61.111 26.67 0.00 35.95 3.91
391 392 2.499732 CGCGCTTTCGGTTTGCTC 60.500 61.111 5.56 0.00 35.95 4.26
392 393 2.126850 GCGCTTTCGGTTTGCTCC 60.127 61.111 0.00 0.00 35.95 4.70
399 400 2.978010 CGGTTTGCTCCGGTGCTT 60.978 61.111 27.24 0.00 45.88 3.91
400 401 2.954611 GGTTTGCTCCGGTGCTTC 59.045 61.111 27.24 16.91 0.00 3.86
401 402 1.600916 GGTTTGCTCCGGTGCTTCT 60.601 57.895 27.24 0.00 0.00 2.85
402 403 1.578206 GGTTTGCTCCGGTGCTTCTC 61.578 60.000 27.24 15.06 0.00 2.87
403 404 1.667830 TTTGCTCCGGTGCTTCTCG 60.668 57.895 27.24 0.00 0.00 4.04
404 405 2.377628 TTTGCTCCGGTGCTTCTCGT 62.378 55.000 27.24 0.00 0.00 4.18
405 406 2.507324 GCTCCGGTGCTTCTCGTC 60.507 66.667 20.97 0.00 0.00 4.20
406 407 2.202492 CTCCGGTGCTTCTCGTCG 60.202 66.667 0.00 0.00 0.00 5.12
407 408 2.979197 CTCCGGTGCTTCTCGTCGT 61.979 63.158 0.00 0.00 0.00 4.34
408 409 2.504244 CCGGTGCTTCTCGTCGTC 60.504 66.667 0.00 0.00 0.00 4.20
409 410 2.870161 CGGTGCTTCTCGTCGTCG 60.870 66.667 0.00 0.00 38.55 5.12
410 411 3.173240 GGTGCTTCTCGTCGTCGC 61.173 66.667 0.00 0.00 36.96 5.19
411 412 2.126812 GTGCTTCTCGTCGTCGCT 60.127 61.111 0.00 0.00 36.96 4.93
412 413 1.134075 GTGCTTCTCGTCGTCGCTA 59.866 57.895 0.00 0.00 36.96 4.26
413 414 0.858135 GTGCTTCTCGTCGTCGCTAG 60.858 60.000 0.00 0.00 36.96 3.42
414 415 1.297745 GCTTCTCGTCGTCGCTAGG 60.298 63.158 0.00 0.00 36.96 3.02
415 416 1.979831 GCTTCTCGTCGTCGCTAGGT 61.980 60.000 0.00 0.00 36.96 3.08
416 417 0.247735 CTTCTCGTCGTCGCTAGGTG 60.248 60.000 0.00 0.00 36.96 4.00
417 418 0.952497 TTCTCGTCGTCGCTAGGTGT 60.952 55.000 0.00 0.00 36.96 4.16
418 419 0.952497 TCTCGTCGTCGCTAGGTGTT 60.952 55.000 0.00 0.00 36.96 3.32
419 420 0.520827 CTCGTCGTCGCTAGGTGTTC 60.521 60.000 0.00 0.00 36.96 3.18
420 421 0.952497 TCGTCGTCGCTAGGTGTTCT 60.952 55.000 0.00 0.00 36.96 3.01
421 422 0.723414 CGTCGTCGCTAGGTGTTCTA 59.277 55.000 0.00 0.00 0.00 2.10
422 423 1.528603 CGTCGTCGCTAGGTGTTCTAC 60.529 57.143 0.00 0.00 0.00 2.59
423 424 0.723414 TCGTCGCTAGGTGTTCTACG 59.277 55.000 0.00 0.00 0.00 3.51
424 425 0.445436 CGTCGCTAGGTGTTCTACGT 59.555 55.000 0.00 0.00 0.00 3.57
425 426 1.660607 CGTCGCTAGGTGTTCTACGTA 59.339 52.381 0.00 0.00 0.00 3.57
426 427 2.286294 CGTCGCTAGGTGTTCTACGTAT 59.714 50.000 0.00 0.00 0.00 3.06
427 428 3.603401 CGTCGCTAGGTGTTCTACGTATC 60.603 52.174 0.00 0.00 0.00 2.24
428 429 3.559242 GTCGCTAGGTGTTCTACGTATCT 59.441 47.826 0.00 0.00 0.00 1.98
429 430 3.558829 TCGCTAGGTGTTCTACGTATCTG 59.441 47.826 0.00 0.00 0.00 2.90
430 431 3.303857 CGCTAGGTGTTCTACGTATCTGG 60.304 52.174 0.00 0.00 0.00 3.86
431 432 3.631227 GCTAGGTGTTCTACGTATCTGGT 59.369 47.826 0.00 0.00 0.00 4.00
432 433 4.097589 GCTAGGTGTTCTACGTATCTGGTT 59.902 45.833 0.00 0.00 0.00 3.67
433 434 4.451629 AGGTGTTCTACGTATCTGGTTG 57.548 45.455 0.00 0.00 0.00 3.77
434 435 3.830755 AGGTGTTCTACGTATCTGGTTGT 59.169 43.478 0.00 0.00 0.00 3.32
435 436 5.012239 AGGTGTTCTACGTATCTGGTTGTA 58.988 41.667 0.00 0.00 0.00 2.41
436 437 5.477984 AGGTGTTCTACGTATCTGGTTGTAA 59.522 40.000 0.00 0.00 0.00 2.41
437 438 6.154021 AGGTGTTCTACGTATCTGGTTGTAAT 59.846 38.462 0.00 0.00 0.00 1.89
438 439 6.815142 GGTGTTCTACGTATCTGGTTGTAATT 59.185 38.462 0.00 0.00 0.00 1.40
439 440 7.332678 GGTGTTCTACGTATCTGGTTGTAATTT 59.667 37.037 0.00 0.00 0.00 1.82
440 441 8.715088 GTGTTCTACGTATCTGGTTGTAATTTT 58.285 33.333 0.00 0.00 0.00 1.82
441 442 8.714179 TGTTCTACGTATCTGGTTGTAATTTTG 58.286 33.333 0.00 0.00 0.00 2.44
442 443 7.837202 TCTACGTATCTGGTTGTAATTTTGG 57.163 36.000 0.00 0.00 0.00 3.28
443 444 5.890424 ACGTATCTGGTTGTAATTTTGGG 57.110 39.130 0.00 0.00 0.00 4.12
444 445 5.318630 ACGTATCTGGTTGTAATTTTGGGT 58.681 37.500 0.00 0.00 0.00 4.51
445 446 6.474630 ACGTATCTGGTTGTAATTTTGGGTA 58.525 36.000 0.00 0.00 0.00 3.69
446 447 6.372381 ACGTATCTGGTTGTAATTTTGGGTAC 59.628 38.462 0.00 0.00 0.00 3.34
447 448 6.596497 CGTATCTGGTTGTAATTTTGGGTACT 59.404 38.462 0.00 0.00 0.00 2.73
448 449 7.201582 CGTATCTGGTTGTAATTTTGGGTACTC 60.202 40.741 0.00 0.00 0.00 2.59
449 450 5.318630 TCTGGTTGTAATTTTGGGTACTCC 58.681 41.667 0.00 0.00 0.00 3.85
450 451 5.073965 TCTGGTTGTAATTTTGGGTACTCCT 59.926 40.000 0.00 0.00 36.20 3.69
451 452 5.318630 TGGTTGTAATTTTGGGTACTCCTC 58.681 41.667 0.00 0.00 36.20 3.71
452 453 4.393990 GGTTGTAATTTTGGGTACTCCTCG 59.606 45.833 0.00 0.00 36.20 4.63
453 454 4.895668 TGTAATTTTGGGTACTCCTCGT 57.104 40.909 0.00 0.00 36.20 4.18
454 455 4.571919 TGTAATTTTGGGTACTCCTCGTG 58.428 43.478 0.00 0.00 36.20 4.35
455 456 3.782656 AATTTTGGGTACTCCTCGTGT 57.217 42.857 0.00 0.00 36.20 4.49
456 457 3.782656 ATTTTGGGTACTCCTCGTGTT 57.217 42.857 0.00 0.00 36.20 3.32
457 458 3.564053 TTTTGGGTACTCCTCGTGTTT 57.436 42.857 0.00 0.00 36.20 2.83
458 459 3.564053 TTTGGGTACTCCTCGTGTTTT 57.436 42.857 0.00 0.00 36.20 2.43
459 460 3.564053 TTGGGTACTCCTCGTGTTTTT 57.436 42.857 0.00 0.00 36.20 1.94
476 477 3.569194 TTTTTGTACTGCCAGGACAGA 57.431 42.857 10.19 2.51 40.25 3.41
477 478 3.788227 TTTTGTACTGCCAGGACAGAT 57.212 42.857 10.19 5.13 40.25 2.90
478 479 4.901197 TTTTGTACTGCCAGGACAGATA 57.099 40.909 10.19 0.00 40.25 1.98
479 480 4.901197 TTTGTACTGCCAGGACAGATAA 57.099 40.909 10.19 0.00 40.25 1.75
480 481 5.435686 TTTGTACTGCCAGGACAGATAAT 57.564 39.130 10.19 0.00 40.25 1.28
481 482 4.406648 TGTACTGCCAGGACAGATAATG 57.593 45.455 5.42 0.00 40.25 1.90
482 483 4.030216 TGTACTGCCAGGACAGATAATGA 58.970 43.478 5.42 0.00 40.25 2.57
483 484 4.469586 TGTACTGCCAGGACAGATAATGAA 59.530 41.667 5.42 0.00 40.25 2.57
484 485 4.785346 ACTGCCAGGACAGATAATGAAT 57.215 40.909 15.48 0.00 40.25 2.57
485 486 5.894298 ACTGCCAGGACAGATAATGAATA 57.106 39.130 15.48 0.00 40.25 1.75
486 487 6.445451 ACTGCCAGGACAGATAATGAATAT 57.555 37.500 15.48 0.00 40.25 1.28
487 488 7.559335 ACTGCCAGGACAGATAATGAATATA 57.441 36.000 15.48 0.00 40.25 0.86
488 489 8.155620 ACTGCCAGGACAGATAATGAATATAT 57.844 34.615 15.48 0.00 40.25 0.86
489 490 8.263640 ACTGCCAGGACAGATAATGAATATATC 58.736 37.037 15.48 0.00 40.25 1.63
490 491 8.149631 TGCCAGGACAGATAATGAATATATCA 57.850 34.615 0.00 0.00 43.67 2.15
531 533 7.749126 GGAGTAATGAGTAAAATGTGTTTTCCG 59.251 37.037 0.00 0.00 38.44 4.30
584 586 0.030504 TCGGTTCTTGTGTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
956 984 1.066587 CCCGCGACCATCTCTTCTC 59.933 63.158 8.23 0.00 0.00 2.87
1686 1723 2.789917 CCGGACGTCGTCGAATCT 59.210 61.111 18.61 0.00 40.62 2.40
1819 1856 3.619038 CACCAAGGCGAAGAAGTAATCTC 59.381 47.826 0.00 0.00 37.42 2.75
1839 1876 4.326278 TCTCGTGTAAAGATCGTGCATTTC 59.674 41.667 0.00 0.00 0.00 2.17
1841 1878 5.404096 TCGTGTAAAGATCGTGCATTTCTA 58.596 37.500 0.00 0.00 0.00 2.10
1848 1885 5.459536 AGATCGTGCATTTCTATGAGCTA 57.540 39.130 0.00 0.00 33.37 3.32
1928 1965 1.212616 CAGGAGGCGCTTAATTCGAG 58.787 55.000 7.64 0.00 0.00 4.04
2011 2075 8.887036 ATAGAGTATTTGATCGTGCATTTGTA 57.113 30.769 0.00 0.00 0.00 2.41
2188 2263 1.464429 GACGCTCTCATGCACGTACG 61.464 60.000 15.01 15.01 39.16 3.67
2220 2295 2.527951 ATCCTGAACTGTCTGCCCGC 62.528 60.000 0.00 0.00 0.00 6.13
2237 2312 2.364579 CCAGGGCTGGGTACGGTA 60.365 66.667 0.00 0.00 46.81 4.02
2238 2313 1.991167 CCAGGGCTGGGTACGGTAA 60.991 63.158 0.00 0.00 46.81 2.85
2239 2314 1.555477 CCAGGGCTGGGTACGGTAAA 61.555 60.000 0.00 0.00 46.81 2.01
2240 2315 0.325602 CAGGGCTGGGTACGGTAAAA 59.674 55.000 0.00 0.00 0.00 1.52
2241 2316 0.616891 AGGGCTGGGTACGGTAAAAG 59.383 55.000 0.00 0.00 0.00 2.27
2242 2317 0.614812 GGGCTGGGTACGGTAAAAGA 59.385 55.000 0.00 0.00 0.00 2.52
2243 2318 1.406477 GGGCTGGGTACGGTAAAAGAG 60.406 57.143 0.00 0.00 0.00 2.85
2244 2319 1.366679 GCTGGGTACGGTAAAAGAGC 58.633 55.000 0.00 0.00 0.00 4.09
2245 2320 1.066358 GCTGGGTACGGTAAAAGAGCT 60.066 52.381 0.00 0.00 0.00 4.09
2246 2321 2.889852 CTGGGTACGGTAAAAGAGCTC 58.110 52.381 5.27 5.27 0.00 4.09
2334 2409 6.542735 GGTATCTTAGTCATTTCCCCTTGTTC 59.457 42.308 0.00 0.00 0.00 3.18
2335 2410 5.843019 TCTTAGTCATTTCCCCTTGTTCT 57.157 39.130 0.00 0.00 0.00 3.01
2448 2523 4.891727 CTTCATCGTCCGCCCGGG 62.892 72.222 19.09 19.09 35.59 5.73
2531 2606 2.032620 TGGCAAAAGAAAACGGCCTAA 58.967 42.857 0.00 0.00 44.85 2.69
2746 4745 9.616634 GTACTTGTATTTGCATATCATGGATTG 57.383 33.333 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.951745 CGCGCGTGGATGTCTCTC 60.952 66.667 24.19 0.00 0.00 3.20
19 20 3.878519 GTCGCGTCGGAGGAGGAG 61.879 72.222 5.77 0.00 0.00 3.69
37 38 3.508840 CCCATTCTCGCAACCCGC 61.509 66.667 0.00 0.00 36.73 6.13
38 39 2.824041 CCCCATTCTCGCAACCCG 60.824 66.667 0.00 0.00 38.61 5.28
39 40 1.452108 CTCCCCATTCTCGCAACCC 60.452 63.158 0.00 0.00 0.00 4.11
40 41 2.115291 GCTCCCCATTCTCGCAACC 61.115 63.158 0.00 0.00 0.00 3.77
41 42 2.464459 CGCTCCCCATTCTCGCAAC 61.464 63.158 0.00 0.00 0.00 4.17
42 43 2.125147 CGCTCCCCATTCTCGCAA 60.125 61.111 0.00 0.00 0.00 4.85
43 44 4.838152 GCGCTCCCCATTCTCGCA 62.838 66.667 0.00 0.00 44.50 5.10
44 45 4.537433 AGCGCTCCCCATTCTCGC 62.537 66.667 2.64 0.00 45.34 5.03
45 46 2.279784 GAGCGCTCCCCATTCTCG 60.280 66.667 27.22 0.00 0.00 4.04
46 47 1.227497 CTGAGCGCTCCCCATTCTC 60.227 63.158 33.23 7.79 0.00 2.87
47 48 2.906458 CTGAGCGCTCCCCATTCT 59.094 61.111 33.23 0.00 0.00 2.40
48 49 2.899339 GCTGAGCGCTCCCCATTC 60.899 66.667 33.23 9.38 35.14 2.67
59 60 1.870016 GTCAGTAGTCGCGCTGAGC 60.870 63.158 13.40 0.00 41.71 4.26
60 61 0.169230 AAGTCAGTAGTCGCGCTGAG 59.831 55.000 13.40 4.10 41.71 3.35
61 62 0.168348 GAAGTCAGTAGTCGCGCTGA 59.832 55.000 5.56 9.67 39.17 4.26
62 63 0.169230 AGAAGTCAGTAGTCGCGCTG 59.831 55.000 5.56 2.62 0.00 5.18
63 64 0.882474 AAGAAGTCAGTAGTCGCGCT 59.118 50.000 5.56 4.52 0.00 5.92
64 65 1.261097 GAAGAAGTCAGTAGTCGCGC 58.739 55.000 0.00 0.00 0.00 6.86
65 66 1.136029 ACGAAGAAGTCAGTAGTCGCG 60.136 52.381 0.00 0.00 31.89 5.87
66 67 2.095869 TGACGAAGAAGTCAGTAGTCGC 60.096 50.000 0.00 0.00 45.18 5.19
67 68 3.808116 TGACGAAGAAGTCAGTAGTCG 57.192 47.619 0.00 0.00 45.18 4.18
98 99 1.441682 GTTGTCGACGTCGGAGTCC 60.442 63.158 35.05 18.76 40.29 3.85
99 100 1.441682 GGTTGTCGACGTCGGAGTC 60.442 63.158 35.05 22.50 40.29 3.36
100 101 1.849976 GAGGTTGTCGACGTCGGAGT 61.850 60.000 35.05 15.64 40.29 3.85
101 102 1.154263 GAGGTTGTCGACGTCGGAG 60.154 63.158 35.05 10.40 40.29 4.63
102 103 2.620112 GGAGGTTGTCGACGTCGGA 61.620 63.158 35.05 20.69 42.63 4.55
103 104 2.126580 GGAGGTTGTCGACGTCGG 60.127 66.667 35.05 18.25 42.63 4.79
104 105 1.154263 GAGGAGGTTGTCGACGTCG 60.154 63.158 31.30 31.30 42.63 5.12
105 106 1.154263 CGAGGAGGTTGTCGACGTC 60.154 63.158 11.62 5.18 41.34 4.34
106 107 1.598962 TCGAGGAGGTTGTCGACGT 60.599 57.895 11.62 0.00 40.19 4.34
107 108 3.260931 TCGAGGAGGTTGTCGACG 58.739 61.111 11.62 0.00 40.19 5.12
110 111 0.526211 TGTCATCGAGGAGGTTGTCG 59.474 55.000 0.00 0.00 37.54 4.35
111 112 2.544685 CATGTCATCGAGGAGGTTGTC 58.455 52.381 0.00 0.00 0.00 3.18
112 113 1.208052 CCATGTCATCGAGGAGGTTGT 59.792 52.381 0.00 0.00 0.00 3.32
113 114 1.945387 CCATGTCATCGAGGAGGTTG 58.055 55.000 0.00 0.00 0.00 3.77
114 115 0.179000 GCCATGTCATCGAGGAGGTT 59.821 55.000 0.00 0.00 0.00 3.50
115 116 0.689080 AGCCATGTCATCGAGGAGGT 60.689 55.000 0.00 0.00 0.00 3.85
116 117 0.249784 CAGCCATGTCATCGAGGAGG 60.250 60.000 0.00 0.00 0.00 4.30
117 118 0.749049 TCAGCCATGTCATCGAGGAG 59.251 55.000 0.00 0.00 0.00 3.69
118 119 0.461548 GTCAGCCATGTCATCGAGGA 59.538 55.000 0.00 0.00 0.00 3.71
119 120 0.176449 TGTCAGCCATGTCATCGAGG 59.824 55.000 0.00 0.00 0.00 4.63
120 121 1.931841 CTTGTCAGCCATGTCATCGAG 59.068 52.381 0.00 0.00 0.00 4.04
121 122 1.405933 CCTTGTCAGCCATGTCATCGA 60.406 52.381 0.00 0.00 0.00 3.59
122 123 1.012086 CCTTGTCAGCCATGTCATCG 58.988 55.000 0.00 0.00 0.00 3.84
123 124 2.012673 GTCCTTGTCAGCCATGTCATC 58.987 52.381 0.00 0.00 0.00 2.92
124 125 1.352017 TGTCCTTGTCAGCCATGTCAT 59.648 47.619 0.00 0.00 0.00 3.06
125 126 0.764271 TGTCCTTGTCAGCCATGTCA 59.236 50.000 0.00 0.00 0.00 3.58
126 127 1.160137 GTGTCCTTGTCAGCCATGTC 58.840 55.000 0.00 0.00 0.00 3.06
127 128 0.250901 GGTGTCCTTGTCAGCCATGT 60.251 55.000 0.00 0.00 0.00 3.21
128 129 1.300971 CGGTGTCCTTGTCAGCCATG 61.301 60.000 0.00 0.00 0.00 3.66
129 130 1.003355 CGGTGTCCTTGTCAGCCAT 60.003 57.895 0.00 0.00 0.00 4.40
130 131 2.137528 TCGGTGTCCTTGTCAGCCA 61.138 57.895 0.00 0.00 0.00 4.75
131 132 1.668151 GTCGGTGTCCTTGTCAGCC 60.668 63.158 0.00 0.00 0.00 4.85
132 133 1.668151 GGTCGGTGTCCTTGTCAGC 60.668 63.158 0.00 0.00 0.00 4.26
133 134 1.004918 GGGTCGGTGTCCTTGTCAG 60.005 63.158 0.00 0.00 0.00 3.51
134 135 2.513259 GGGGTCGGTGTCCTTGTCA 61.513 63.158 0.00 0.00 0.00 3.58
135 136 2.047213 TTGGGGTCGGTGTCCTTGTC 62.047 60.000 0.00 0.00 0.00 3.18
136 137 2.052047 CTTGGGGTCGGTGTCCTTGT 62.052 60.000 0.00 0.00 0.00 3.16
137 138 1.302511 CTTGGGGTCGGTGTCCTTG 60.303 63.158 0.00 0.00 0.00 3.61
138 139 1.765597 GACTTGGGGTCGGTGTCCTT 61.766 60.000 0.00 0.00 35.07 3.36
139 140 2.122547 ACTTGGGGTCGGTGTCCT 60.123 61.111 0.00 0.00 0.00 3.85
140 141 2.346365 GACTTGGGGTCGGTGTCC 59.654 66.667 0.00 0.00 35.07 4.02
141 142 2.346365 GGACTTGGGGTCGGTGTC 59.654 66.667 0.00 0.00 45.35 3.67
142 143 2.446994 TGGACTTGGGGTCGGTGT 60.447 61.111 0.00 0.00 45.35 4.16
143 144 2.347490 CTGGACTTGGGGTCGGTG 59.653 66.667 0.00 0.00 45.35 4.94
144 145 3.637273 GCTGGACTTGGGGTCGGT 61.637 66.667 0.00 0.00 45.35 4.69
145 146 4.760047 CGCTGGACTTGGGGTCGG 62.760 72.222 0.00 0.00 45.35 4.79
147 148 3.553095 AAGCGCTGGACTTGGGGTC 62.553 63.158 12.58 0.00 43.79 4.46
148 149 3.553095 GAAGCGCTGGACTTGGGGT 62.553 63.158 12.58 0.00 0.00 4.95
149 150 2.747855 GAAGCGCTGGACTTGGGG 60.748 66.667 12.58 0.00 0.00 4.96
150 151 2.037136 CAGAAGCGCTGGACTTGGG 61.037 63.158 12.58 0.00 41.07 4.12
151 152 2.684843 GCAGAAGCGCTGGACTTGG 61.685 63.158 12.58 1.74 45.03 3.61
152 153 2.866028 GCAGAAGCGCTGGACTTG 59.134 61.111 12.58 6.60 45.03 3.16
162 163 0.676151 AGGTAAGCAGCAGCAGAAGC 60.676 55.000 3.17 0.00 45.49 3.86
163 164 1.736681 GAAGGTAAGCAGCAGCAGAAG 59.263 52.381 3.17 0.00 45.49 2.85
164 165 1.349026 AGAAGGTAAGCAGCAGCAGAA 59.651 47.619 3.17 0.00 45.49 3.02
165 166 0.979665 AGAAGGTAAGCAGCAGCAGA 59.020 50.000 3.17 0.00 45.49 4.26
166 167 1.066286 AGAGAAGGTAAGCAGCAGCAG 60.066 52.381 3.17 0.00 45.49 4.24
167 168 0.979665 AGAGAAGGTAAGCAGCAGCA 59.020 50.000 3.17 0.00 45.49 4.41
168 169 2.106477 AAGAGAAGGTAAGCAGCAGC 57.894 50.000 0.00 0.00 42.56 5.25
169 170 3.406764 ACAAAGAGAAGGTAAGCAGCAG 58.593 45.455 0.00 0.00 0.00 4.24
170 171 3.181455 TGACAAAGAGAAGGTAAGCAGCA 60.181 43.478 0.00 0.00 0.00 4.41
171 172 3.403038 TGACAAAGAGAAGGTAAGCAGC 58.597 45.455 0.00 0.00 0.00 5.25
172 173 6.566197 ATTTGACAAAGAGAAGGTAAGCAG 57.434 37.500 6.77 0.00 0.00 4.24
173 174 6.735694 GCAATTTGACAAAGAGAAGGTAAGCA 60.736 38.462 6.77 0.00 0.00 3.91
174 175 5.631096 GCAATTTGACAAAGAGAAGGTAAGC 59.369 40.000 6.77 0.00 0.00 3.09
175 176 6.738114 TGCAATTTGACAAAGAGAAGGTAAG 58.262 36.000 6.77 0.00 0.00 2.34
176 177 6.707440 TGCAATTTGACAAAGAGAAGGTAA 57.293 33.333 6.77 0.00 0.00 2.85
177 178 6.489700 TCATGCAATTTGACAAAGAGAAGGTA 59.510 34.615 6.77 0.00 0.00 3.08
178 179 5.302568 TCATGCAATTTGACAAAGAGAAGGT 59.697 36.000 6.77 0.00 0.00 3.50
179 180 5.632347 GTCATGCAATTTGACAAAGAGAAGG 59.368 40.000 12.91 0.00 42.43 3.46
180 181 6.444633 AGTCATGCAATTTGACAAAGAGAAG 58.555 36.000 18.52 0.00 44.73 2.85
181 182 6.395426 AGTCATGCAATTTGACAAAGAGAA 57.605 33.333 18.52 0.00 44.73 2.87
182 183 6.183360 ACAAGTCATGCAATTTGACAAAGAGA 60.183 34.615 18.52 0.00 44.73 3.10
183 184 5.981315 ACAAGTCATGCAATTTGACAAAGAG 59.019 36.000 18.52 2.74 44.73 2.85
184 185 5.904941 ACAAGTCATGCAATTTGACAAAGA 58.095 33.333 18.52 0.00 44.73 2.52
185 186 6.592798 AACAAGTCATGCAATTTGACAAAG 57.407 33.333 18.52 11.04 44.73 2.77
186 187 6.981762 AAACAAGTCATGCAATTTGACAAA 57.018 29.167 18.52 2.48 44.73 2.83
187 188 6.981762 AAAACAAGTCATGCAATTTGACAA 57.018 29.167 18.52 0.00 44.73 3.18
188 189 7.924947 TGATAAAACAAGTCATGCAATTTGACA 59.075 29.630 18.52 0.00 44.73 3.58
189 190 8.216453 GTGATAAAACAAGTCATGCAATTTGAC 58.784 33.333 10.35 10.35 43.05 3.18
190 191 8.143193 AGTGATAAAACAAGTCATGCAATTTGA 58.857 29.630 0.00 0.00 0.00 2.69
191 192 8.218441 CAGTGATAAAACAAGTCATGCAATTTG 58.782 33.333 0.00 0.00 0.00 2.32
192 193 7.095523 GCAGTGATAAAACAAGTCATGCAATTT 60.096 33.333 0.00 0.00 32.14 1.82
193 194 6.366877 GCAGTGATAAAACAAGTCATGCAATT 59.633 34.615 0.00 0.00 32.14 2.32
194 195 5.865552 GCAGTGATAAAACAAGTCATGCAAT 59.134 36.000 0.00 0.00 32.14 3.56
195 196 5.009911 AGCAGTGATAAAACAAGTCATGCAA 59.990 36.000 0.00 0.00 33.19 4.08
196 197 4.520111 AGCAGTGATAAAACAAGTCATGCA 59.480 37.500 0.00 0.00 33.19 3.96
197 198 5.051891 AGCAGTGATAAAACAAGTCATGC 57.948 39.130 0.00 0.00 32.07 4.06
198 199 9.102757 AGTATAGCAGTGATAAAACAAGTCATG 57.897 33.333 0.00 0.00 0.00 3.07
200 201 9.803315 CTAGTATAGCAGTGATAAAACAAGTCA 57.197 33.333 0.00 0.00 0.00 3.41
201 202 9.804758 ACTAGTATAGCAGTGATAAAACAAGTC 57.195 33.333 0.00 0.00 44.39 3.01
202 203 9.804758 GACTAGTATAGCAGTGATAAAACAAGT 57.195 33.333 0.00 0.00 44.39 3.16
203 204 9.803315 TGACTAGTATAGCAGTGATAAAACAAG 57.197 33.333 0.00 0.00 44.39 3.16
205 206 9.750125 CATGACTAGTATAGCAGTGATAAAACA 57.250 33.333 0.00 0.00 44.39 2.83
206 207 8.704234 GCATGACTAGTATAGCAGTGATAAAAC 58.296 37.037 0.00 0.00 44.39 2.43
207 208 8.642432 AGCATGACTAGTATAGCAGTGATAAAA 58.358 33.333 13.36 0.00 44.39 1.52
208 209 8.183104 AGCATGACTAGTATAGCAGTGATAAA 57.817 34.615 13.36 0.00 44.39 1.40
209 210 7.767250 AGCATGACTAGTATAGCAGTGATAA 57.233 36.000 13.36 0.00 44.39 1.75
210 211 7.767250 AAGCATGACTAGTATAGCAGTGATA 57.233 36.000 13.36 0.00 44.39 2.15
211 212 6.662865 AAGCATGACTAGTATAGCAGTGAT 57.337 37.500 13.36 0.00 44.39 3.06
212 213 6.471233 AAAGCATGACTAGTATAGCAGTGA 57.529 37.500 13.36 0.00 44.39 3.41
213 214 8.303156 AGATAAAGCATGACTAGTATAGCAGTG 58.697 37.037 13.36 0.00 44.39 3.66
214 215 8.415950 AGATAAAGCATGACTAGTATAGCAGT 57.584 34.615 13.36 5.20 44.39 4.40
257 258 9.683069 GAAATATGAGCAATTTACCGAATGATT 57.317 29.630 0.00 0.00 0.00 2.57
258 259 8.299570 GGAAATATGAGCAATTTACCGAATGAT 58.700 33.333 0.00 0.00 0.00 2.45
259 260 7.284261 TGGAAATATGAGCAATTTACCGAATGA 59.716 33.333 0.00 0.00 0.00 2.57
260 261 7.424803 TGGAAATATGAGCAATTTACCGAATG 58.575 34.615 0.00 0.00 0.00 2.67
261 262 7.581213 TGGAAATATGAGCAATTTACCGAAT 57.419 32.000 0.00 0.00 0.00 3.34
262 263 7.094162 TGTTGGAAATATGAGCAATTTACCGAA 60.094 33.333 0.00 0.00 0.00 4.30
263 264 6.375736 TGTTGGAAATATGAGCAATTTACCGA 59.624 34.615 0.00 0.00 0.00 4.69
264 265 6.559810 TGTTGGAAATATGAGCAATTTACCG 58.440 36.000 0.00 0.00 0.00 4.02
265 266 8.947055 ATTGTTGGAAATATGAGCAATTTACC 57.053 30.769 0.00 0.00 0.00 2.85
284 285 2.607771 CGACTTGAGCCCCAAATTGTTG 60.608 50.000 0.00 0.00 33.76 3.33
285 286 1.613437 CGACTTGAGCCCCAAATTGTT 59.387 47.619 0.00 0.00 33.76 2.83
286 287 1.202879 TCGACTTGAGCCCCAAATTGT 60.203 47.619 0.00 0.00 33.76 2.71
287 288 1.200020 GTCGACTTGAGCCCCAAATTG 59.800 52.381 8.70 0.00 33.76 2.32
288 289 1.534729 GTCGACTTGAGCCCCAAATT 58.465 50.000 8.70 0.00 33.76 1.82
289 290 0.673644 CGTCGACTTGAGCCCCAAAT 60.674 55.000 14.70 0.00 33.76 2.32
290 291 1.301401 CGTCGACTTGAGCCCCAAA 60.301 57.895 14.70 0.00 33.76 3.28
291 292 2.154798 CTCGTCGACTTGAGCCCCAA 62.155 60.000 14.70 0.00 0.00 4.12
292 293 2.599281 TCGTCGACTTGAGCCCCA 60.599 61.111 14.70 0.00 0.00 4.96
293 294 2.156051 AACTCGTCGACTTGAGCCCC 62.156 60.000 17.26 0.00 35.61 5.80
294 295 0.733223 GAACTCGTCGACTTGAGCCC 60.733 60.000 17.26 8.11 35.61 5.19
295 296 0.733223 GGAACTCGTCGACTTGAGCC 60.733 60.000 17.26 9.77 35.61 4.70
296 297 0.733223 GGGAACTCGTCGACTTGAGC 60.733 60.000 17.26 5.35 35.61 4.26
297 298 0.454620 CGGGAACTCGTCGACTTGAG 60.455 60.000 14.70 15.54 38.21 3.02
298 299 0.886043 TCGGGAACTCGTCGACTTGA 60.886 55.000 14.70 3.37 0.00 3.02
299 300 0.728466 GTCGGGAACTCGTCGACTTG 60.728 60.000 14.70 8.48 46.49 3.16
300 301 1.578423 GTCGGGAACTCGTCGACTT 59.422 57.895 14.70 0.43 46.49 3.01
301 302 3.261933 GTCGGGAACTCGTCGACT 58.738 61.111 14.70 0.00 46.49 4.18
303 304 1.301953 TCAGTCGGGAACTCGTCGA 60.302 57.895 0.00 0.00 35.45 4.20
304 305 1.154263 GTCAGTCGGGAACTCGTCG 60.154 63.158 0.00 0.00 35.45 5.12
305 306 1.130186 GTAGTCAGTCGGGAACTCGTC 59.870 57.143 0.00 0.00 35.45 4.20
306 307 1.163554 GTAGTCAGTCGGGAACTCGT 58.836 55.000 0.00 0.00 35.45 4.18
307 308 1.451067 AGTAGTCAGTCGGGAACTCG 58.549 55.000 0.00 0.00 35.45 4.18
308 309 5.587844 TGTTATAGTAGTCAGTCGGGAACTC 59.412 44.000 0.00 0.00 35.45 3.01
309 310 5.503927 TGTTATAGTAGTCAGTCGGGAACT 58.496 41.667 0.00 0.00 39.44 3.01
310 311 5.824904 TGTTATAGTAGTCAGTCGGGAAC 57.175 43.478 0.00 0.00 0.00 3.62
311 312 5.948162 ACTTGTTATAGTAGTCAGTCGGGAA 59.052 40.000 0.00 0.00 0.00 3.97
312 313 5.503927 ACTTGTTATAGTAGTCAGTCGGGA 58.496 41.667 0.00 0.00 0.00 5.14
313 314 5.831702 ACTTGTTATAGTAGTCAGTCGGG 57.168 43.478 0.00 0.00 0.00 5.14
314 315 7.431668 GCTAAACTTGTTATAGTAGTCAGTCGG 59.568 40.741 0.00 0.00 0.00 4.79
315 316 7.431668 GGCTAAACTTGTTATAGTAGTCAGTCG 59.568 40.741 0.00 0.00 0.00 4.18
316 317 7.705752 GGGCTAAACTTGTTATAGTAGTCAGTC 59.294 40.741 0.00 0.00 0.00 3.51
317 318 7.179694 TGGGCTAAACTTGTTATAGTAGTCAGT 59.820 37.037 0.00 0.00 0.00 3.41
318 319 7.553334 TGGGCTAAACTTGTTATAGTAGTCAG 58.447 38.462 0.00 0.00 0.00 3.51
319 320 7.484993 TGGGCTAAACTTGTTATAGTAGTCA 57.515 36.000 0.00 0.00 0.00 3.41
320 321 8.782339 TTTGGGCTAAACTTGTTATAGTAGTC 57.218 34.615 0.00 0.00 0.00 2.59
321 322 9.392259 GATTTGGGCTAAACTTGTTATAGTAGT 57.608 33.333 0.00 0.00 0.00 2.73
322 323 9.614792 AGATTTGGGCTAAACTTGTTATAGTAG 57.385 33.333 0.00 0.00 0.00 2.57
323 324 9.391006 CAGATTTGGGCTAAACTTGTTATAGTA 57.609 33.333 0.00 0.00 0.00 1.82
324 325 7.339466 CCAGATTTGGGCTAAACTTGTTATAGT 59.661 37.037 0.00 0.00 41.05 2.12
325 326 7.707104 CCAGATTTGGGCTAAACTTGTTATAG 58.293 38.462 0.00 0.00 41.05 1.31
326 327 7.639113 CCAGATTTGGGCTAAACTTGTTATA 57.361 36.000 0.00 0.00 41.05 0.98
327 328 6.530019 CCAGATTTGGGCTAAACTTGTTAT 57.470 37.500 0.00 0.00 41.05 1.89
328 329 5.975693 CCAGATTTGGGCTAAACTTGTTA 57.024 39.130 0.00 0.00 41.05 2.41
329 330 4.871933 CCAGATTTGGGCTAAACTTGTT 57.128 40.909 0.00 0.00 41.05 2.83
342 343 0.995024 ACCCTCCCTCACCAGATTTG 59.005 55.000 0.00 0.00 0.00 2.32
343 344 1.290134 GACCCTCCCTCACCAGATTT 58.710 55.000 0.00 0.00 0.00 2.17
344 345 0.978146 CGACCCTCCCTCACCAGATT 60.978 60.000 0.00 0.00 0.00 2.40
345 346 1.381872 CGACCCTCCCTCACCAGAT 60.382 63.158 0.00 0.00 0.00 2.90
346 347 1.875422 ATCGACCCTCCCTCACCAGA 61.875 60.000 0.00 0.00 0.00 3.86
347 348 1.381872 ATCGACCCTCCCTCACCAG 60.382 63.158 0.00 0.00 0.00 4.00
348 349 1.685765 CATCGACCCTCCCTCACCA 60.686 63.158 0.00 0.00 0.00 4.17
349 350 1.381327 TCATCGACCCTCCCTCACC 60.381 63.158 0.00 0.00 0.00 4.02
350 351 1.395826 CCTCATCGACCCTCCCTCAC 61.396 65.000 0.00 0.00 0.00 3.51
351 352 1.075970 CCTCATCGACCCTCCCTCA 60.076 63.158 0.00 0.00 0.00 3.86
352 353 1.834822 CCCTCATCGACCCTCCCTC 60.835 68.421 0.00 0.00 0.00 4.30
353 354 2.283809 CCCTCATCGACCCTCCCT 59.716 66.667 0.00 0.00 0.00 4.20
354 355 3.551407 GCCCTCATCGACCCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
355 356 3.917760 CGCCCTCATCGACCCTCC 61.918 72.222 0.00 0.00 0.00 4.30
356 357 3.917760 CCGCCCTCATCGACCCTC 61.918 72.222 0.00 0.00 0.00 4.30
373 374 4.683334 AGCAAACCGAAAGCGCGC 62.683 61.111 26.66 26.66 35.83 6.86
374 375 2.499732 GAGCAAACCGAAAGCGCG 60.500 61.111 0.00 0.00 35.83 6.86
375 376 2.126850 GGAGCAAACCGAAAGCGC 60.127 61.111 0.00 0.00 35.83 5.92
383 384 1.578206 GAGAAGCACCGGAGCAAACC 61.578 60.000 26.04 11.07 36.85 3.27
384 385 1.869690 GAGAAGCACCGGAGCAAAC 59.130 57.895 26.04 15.33 36.85 2.93
385 386 1.667830 CGAGAAGCACCGGAGCAAA 60.668 57.895 26.04 0.00 36.85 3.68
386 387 2.048222 CGAGAAGCACCGGAGCAA 60.048 61.111 26.04 0.00 36.85 3.91
387 388 3.282745 GACGAGAAGCACCGGAGCA 62.283 63.158 26.04 0.00 36.85 4.26
388 389 2.507324 GACGAGAAGCACCGGAGC 60.507 66.667 16.88 16.88 0.00 4.70
389 390 2.202492 CGACGAGAAGCACCGGAG 60.202 66.667 9.46 0.00 0.00 4.63
390 391 2.974489 GACGACGAGAAGCACCGGA 61.974 63.158 9.46 0.00 0.00 5.14
391 392 2.504244 GACGACGAGAAGCACCGG 60.504 66.667 0.00 0.00 0.00 5.28
392 393 2.870161 CGACGACGAGAAGCACCG 60.870 66.667 0.00 0.00 42.66 4.94
393 394 2.249557 TAGCGACGACGAGAAGCACC 62.250 60.000 12.29 0.00 42.66 5.01
394 395 0.858135 CTAGCGACGACGAGAAGCAC 60.858 60.000 12.29 0.00 42.66 4.40
395 396 1.424240 CTAGCGACGACGAGAAGCA 59.576 57.895 12.29 0.00 42.66 3.91
396 397 1.297745 CCTAGCGACGACGAGAAGC 60.298 63.158 12.29 1.00 42.66 3.86
397 398 0.247735 CACCTAGCGACGACGAGAAG 60.248 60.000 12.29 4.36 42.66 2.85
398 399 0.952497 ACACCTAGCGACGACGAGAA 60.952 55.000 12.29 0.00 42.66 2.87
399 400 0.952497 AACACCTAGCGACGACGAGA 60.952 55.000 12.29 0.00 42.66 4.04
400 401 0.520827 GAACACCTAGCGACGACGAG 60.521 60.000 12.29 0.00 42.66 4.18
401 402 0.952497 AGAACACCTAGCGACGACGA 60.952 55.000 12.29 0.00 42.66 4.20
402 403 0.723414 TAGAACACCTAGCGACGACG 59.277 55.000 2.12 2.12 42.93 5.12
403 404 1.528603 CGTAGAACACCTAGCGACGAC 60.529 57.143 0.00 0.00 0.00 4.34
404 405 0.723414 CGTAGAACACCTAGCGACGA 59.277 55.000 0.00 0.00 0.00 4.20
405 406 0.445436 ACGTAGAACACCTAGCGACG 59.555 55.000 0.00 0.00 0.00 5.12
406 407 3.559242 AGATACGTAGAACACCTAGCGAC 59.441 47.826 0.08 0.00 0.00 5.19
407 408 3.558829 CAGATACGTAGAACACCTAGCGA 59.441 47.826 0.08 0.00 0.00 4.93
408 409 3.303857 CCAGATACGTAGAACACCTAGCG 60.304 52.174 0.08 0.00 0.00 4.26
409 410 3.631227 ACCAGATACGTAGAACACCTAGC 59.369 47.826 0.08 0.00 0.00 3.42
410 411 5.125097 ACAACCAGATACGTAGAACACCTAG 59.875 44.000 0.08 0.00 0.00 3.02
411 412 5.012239 ACAACCAGATACGTAGAACACCTA 58.988 41.667 0.08 0.00 0.00 3.08
412 413 3.830755 ACAACCAGATACGTAGAACACCT 59.169 43.478 0.08 0.00 0.00 4.00
413 414 4.184079 ACAACCAGATACGTAGAACACC 57.816 45.455 0.08 0.00 0.00 4.16
414 415 7.823149 AATTACAACCAGATACGTAGAACAC 57.177 36.000 0.08 0.00 0.00 3.32
415 416 8.714179 CAAAATTACAACCAGATACGTAGAACA 58.286 33.333 0.08 0.00 0.00 3.18
416 417 8.173130 CCAAAATTACAACCAGATACGTAGAAC 58.827 37.037 0.08 0.00 0.00 3.01
417 418 7.334921 CCCAAAATTACAACCAGATACGTAGAA 59.665 37.037 0.08 0.00 0.00 2.10
418 419 6.819649 CCCAAAATTACAACCAGATACGTAGA 59.180 38.462 0.08 0.00 0.00 2.59
419 420 6.596497 ACCCAAAATTACAACCAGATACGTAG 59.404 38.462 0.08 0.00 0.00 3.51
420 421 6.474630 ACCCAAAATTACAACCAGATACGTA 58.525 36.000 0.00 0.00 0.00 3.57
421 422 5.318630 ACCCAAAATTACAACCAGATACGT 58.681 37.500 0.00 0.00 0.00 3.57
422 423 5.890424 ACCCAAAATTACAACCAGATACG 57.110 39.130 0.00 0.00 0.00 3.06
423 424 7.066645 GGAGTACCCAAAATTACAACCAGATAC 59.933 40.741 0.00 0.00 34.14 2.24
424 425 7.037153 AGGAGTACCCAAAATTACAACCAGATA 60.037 37.037 3.60 0.00 37.41 1.98
425 426 5.949952 GGAGTACCCAAAATTACAACCAGAT 59.050 40.000 0.00 0.00 34.14 2.90
426 427 5.073965 AGGAGTACCCAAAATTACAACCAGA 59.926 40.000 3.60 0.00 37.41 3.86
427 428 5.321927 AGGAGTACCCAAAATTACAACCAG 58.678 41.667 3.60 0.00 37.41 4.00
428 429 5.318630 GAGGAGTACCCAAAATTACAACCA 58.681 41.667 3.60 0.00 37.41 3.67
429 430 4.393990 CGAGGAGTACCCAAAATTACAACC 59.606 45.833 3.60 0.00 37.41 3.77
430 431 4.999311 ACGAGGAGTACCCAAAATTACAAC 59.001 41.667 0.00 0.00 37.41 3.32
431 432 4.998672 CACGAGGAGTACCCAAAATTACAA 59.001 41.667 0.00 0.00 37.41 2.41
432 433 4.040706 ACACGAGGAGTACCCAAAATTACA 59.959 41.667 0.00 0.00 37.41 2.41
433 434 4.572909 ACACGAGGAGTACCCAAAATTAC 58.427 43.478 0.00 0.00 37.41 1.89
434 435 4.895668 ACACGAGGAGTACCCAAAATTA 57.104 40.909 0.00 0.00 37.41 1.40
435 436 3.782656 ACACGAGGAGTACCCAAAATT 57.217 42.857 0.00 0.00 37.41 1.82
436 437 3.782656 AACACGAGGAGTACCCAAAAT 57.217 42.857 0.00 0.00 37.41 1.82
437 438 3.564053 AAACACGAGGAGTACCCAAAA 57.436 42.857 0.00 0.00 37.41 2.44
438 439 3.564053 AAAACACGAGGAGTACCCAAA 57.436 42.857 0.00 0.00 37.41 3.28
439 440 3.564053 AAAAACACGAGGAGTACCCAA 57.436 42.857 0.00 0.00 37.41 4.12
456 457 3.569194 TCTGTCCTGGCAGTACAAAAA 57.431 42.857 14.10 0.45 37.70 1.94
457 458 3.788227 ATCTGTCCTGGCAGTACAAAA 57.212 42.857 14.10 5.96 37.70 2.44
458 459 4.901197 TTATCTGTCCTGGCAGTACAAA 57.099 40.909 14.10 1.00 37.70 2.83
459 460 4.469586 TCATTATCTGTCCTGGCAGTACAA 59.530 41.667 14.10 6.05 37.70 2.41
460 461 4.030216 TCATTATCTGTCCTGGCAGTACA 58.970 43.478 12.58 12.58 37.70 2.90
461 462 4.672587 TCATTATCTGTCCTGGCAGTAC 57.327 45.455 14.43 8.72 37.70 2.73
462 463 5.894298 ATTCATTATCTGTCCTGGCAGTA 57.106 39.130 14.43 0.00 37.70 2.74
463 464 4.785346 ATTCATTATCTGTCCTGGCAGT 57.215 40.909 14.43 0.00 37.70 4.40
464 465 8.262933 TGATATATTCATTATCTGTCCTGGCAG 58.737 37.037 7.75 7.75 37.81 4.85
465 466 8.149631 TGATATATTCATTATCTGTCCTGGCA 57.850 34.615 0.00 0.00 0.00 4.92
487 488 8.883731 CATTACTCCACGAGAAAAACTTATGAT 58.116 33.333 0.00 0.00 33.32 2.45
488 489 8.092068 TCATTACTCCACGAGAAAAACTTATGA 58.908 33.333 0.00 0.00 33.32 2.15
489 490 8.251750 TCATTACTCCACGAGAAAAACTTATG 57.748 34.615 0.00 0.00 33.32 1.90
490 491 8.095169 ACTCATTACTCCACGAGAAAAACTTAT 58.905 33.333 0.00 0.00 33.32 1.73
491 492 7.439381 ACTCATTACTCCACGAGAAAAACTTA 58.561 34.615 0.00 0.00 33.32 2.24
492 493 6.289064 ACTCATTACTCCACGAGAAAAACTT 58.711 36.000 0.00 0.00 33.32 2.66
493 494 5.855045 ACTCATTACTCCACGAGAAAAACT 58.145 37.500 0.00 0.00 33.32 2.66
494 495 7.647907 TTACTCATTACTCCACGAGAAAAAC 57.352 36.000 0.00 0.00 33.32 2.43
495 496 8.665643 TTTTACTCATTACTCCACGAGAAAAA 57.334 30.769 0.00 0.00 33.32 1.94
496 497 8.717821 CATTTTACTCATTACTCCACGAGAAAA 58.282 33.333 0.00 0.00 33.32 2.29
497 498 7.876068 ACATTTTACTCATTACTCCACGAGAAA 59.124 33.333 0.00 0.00 33.32 2.52
498 499 7.330946 CACATTTTACTCATTACTCCACGAGAA 59.669 37.037 0.00 0.00 33.32 2.87
499 500 6.811665 CACATTTTACTCATTACTCCACGAGA 59.188 38.462 0.00 0.00 33.32 4.04
500 501 6.590292 ACACATTTTACTCATTACTCCACGAG 59.410 38.462 0.00 0.00 35.52 4.18
501 502 6.460781 ACACATTTTACTCATTACTCCACGA 58.539 36.000 0.00 0.00 0.00 4.35
552 554 5.981315 CACAAGAACCGAGTCAAACTACTAA 59.019 40.000 0.00 0.00 0.00 2.24
623 626 2.032377 CGACGTTGCCAAAAGAAAGCTA 60.032 45.455 0.00 0.00 0.00 3.32
777 793 0.179000 GCCCTGGGATGTCAGTACTG 59.821 60.000 19.27 17.17 33.14 2.74
956 984 0.846870 AGGGGAAGAAGTGGGGAAGG 60.847 60.000 0.00 0.00 0.00 3.46
1059 1087 1.071567 CGCGGAACTCGAAGTCTTCC 61.072 60.000 7.01 0.00 39.83 3.46
1062 1090 1.209640 GACGCGGAACTCGAAGTCT 59.790 57.895 12.47 0.00 39.83 3.24
1683 1720 1.220206 CGGAGGCAGCTTGACAGAT 59.780 57.895 0.00 0.00 0.00 2.90
1728 1765 1.746991 GCCTCTCTTGGCCTTTCCG 60.747 63.158 3.32 0.00 46.82 4.30
1819 1856 4.584029 AGAAATGCACGATCTTTACACG 57.416 40.909 0.00 0.00 0.00 4.49
1915 1952 5.796813 AGTTATTTGTCTCGAATTAAGCGC 58.203 37.500 0.00 0.00 0.00 5.92
2011 2075 3.006537 GCATATCCTGGCATTGAATTGCT 59.993 43.478 13.02 0.00 42.38 3.91
2063 2127 7.488471 GGAGAAGCTGCGTAACGATATAATATT 59.512 37.037 0.00 0.00 0.00 1.28
2158 2233 1.131315 TGAGAGCGTCAGTCGAGAATG 59.869 52.381 0.00 0.00 42.86 2.67
2229 2304 3.181482 GGGTAGAGCTCTTTTACCGTACC 60.181 52.174 23.84 19.44 38.15 3.34
2230 2305 3.698539 AGGGTAGAGCTCTTTTACCGTAC 59.301 47.826 23.84 11.02 38.15 3.67
2231 2306 3.973425 AGGGTAGAGCTCTTTTACCGTA 58.027 45.455 23.84 0.00 38.15 4.02
2232 2307 2.817665 AGGGTAGAGCTCTTTTACCGT 58.182 47.619 23.84 21.02 38.15 4.83
2233 2308 3.056035 ACAAGGGTAGAGCTCTTTTACCG 60.056 47.826 23.84 12.87 35.26 4.02
2234 2309 4.554960 ACAAGGGTAGAGCTCTTTTACC 57.445 45.455 23.84 22.42 35.26 2.85
2235 2310 6.283544 AGTACAAGGGTAGAGCTCTTTTAC 57.716 41.667 23.84 14.17 39.78 2.01
2236 2311 5.421374 GGAGTACAAGGGTAGAGCTCTTTTA 59.579 44.000 23.84 0.00 35.26 1.52
2237 2312 4.223255 GGAGTACAAGGGTAGAGCTCTTTT 59.777 45.833 23.84 8.94 35.26 2.27
2238 2313 3.770388 GGAGTACAAGGGTAGAGCTCTTT 59.230 47.826 23.84 7.10 35.26 2.52
2239 2314 3.245658 TGGAGTACAAGGGTAGAGCTCTT 60.246 47.826 23.84 4.07 38.76 2.85
2240 2315 2.312140 TGGAGTACAAGGGTAGAGCTCT 59.688 50.000 22.17 22.17 0.00 4.09
2241 2316 2.427812 GTGGAGTACAAGGGTAGAGCTC 59.572 54.545 5.27 5.27 0.00 4.09
2242 2317 2.043252 AGTGGAGTACAAGGGTAGAGCT 59.957 50.000 0.00 0.00 0.00 4.09
2243 2318 2.166664 CAGTGGAGTACAAGGGTAGAGC 59.833 54.545 0.00 0.00 0.00 4.09
2244 2319 2.761208 CCAGTGGAGTACAAGGGTAGAG 59.239 54.545 1.68 0.00 0.00 2.43
2245 2320 2.559026 CCCAGTGGAGTACAAGGGTAGA 60.559 54.545 11.95 0.00 40.25 2.59
2246 2321 1.831736 CCCAGTGGAGTACAAGGGTAG 59.168 57.143 11.95 0.00 40.25 3.18
2273 2348 3.195661 GCCAGATTTAGTTGGTACTCCG 58.804 50.000 0.00 0.00 36.81 4.63
2392 2467 7.223193 CGTCGATAAGGGTTCATGTTAATTACA 59.777 37.037 0.00 0.00 41.97 2.41
2393 2468 7.223387 ACGTCGATAAGGGTTCATGTTAATTAC 59.777 37.037 0.00 0.00 0.00 1.89
2394 2469 7.267128 ACGTCGATAAGGGTTCATGTTAATTA 58.733 34.615 0.00 0.00 0.00 1.40
2395 2470 6.110707 ACGTCGATAAGGGTTCATGTTAATT 58.889 36.000 0.00 0.00 0.00 1.40
2396 2471 5.667466 ACGTCGATAAGGGTTCATGTTAAT 58.333 37.500 0.00 0.00 0.00 1.40
2397 2472 5.075858 ACGTCGATAAGGGTTCATGTTAA 57.924 39.130 0.00 0.00 0.00 2.01
2524 2599 2.821546 TCACGAAGATCAATTAGGCCG 58.178 47.619 0.00 0.00 0.00 6.13
2566 2641 8.964533 AAGATATGTATCCTCTAGTCATGGTT 57.035 34.615 0.00 0.00 33.17 3.67
2746 4745 3.061139 CGATCGGTGTATTCTTTTCTCGC 60.061 47.826 7.38 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.