Multiple sequence alignment - TraesCS2D01G192500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G192500 chr2D 100.000 2934 0 0 1 2934 136522348 136519415 0.000000e+00 5419.0
1 TraesCS2D01G192500 chr2D 81.840 837 92 33 1135 1943 136754486 136755290 0.000000e+00 649.0
2 TraesCS2D01G192500 chr2D 85.671 328 26 9 2523 2849 136755972 136756279 2.820000e-85 326.0
3 TraesCS2D01G192500 chr2D 93.496 123 6 2 2521 2642 136477258 136477137 6.460000e-42 182.0
4 TraesCS2D01G192500 chr2D 83.740 123 7 5 754 868 136526494 136526377 1.440000e-18 104.0
5 TraesCS2D01G192500 chr2D 83.505 97 2 4 795 888 136608477 136608392 8.720000e-11 78.7
6 TraesCS2D01G192500 chr2B 85.483 1233 107 38 1047 2235 195005961 195004757 0.000000e+00 1219.0
7 TraesCS2D01G192500 chr2B 77.759 1169 145 60 1135 2240 195456054 195457170 1.930000e-171 612.0
8 TraesCS2D01G192500 chr2B 78.802 835 99 38 1171 1977 194995877 194995093 9.450000e-135 490.0
9 TraesCS2D01G192500 chr2B 85.549 346 39 7 2536 2877 194944173 194943835 4.650000e-93 351.0
10 TraesCS2D01G192500 chr2B 81.776 428 58 10 1382 1808 194950643 194950235 1.010000e-89 340.0
11 TraesCS2D01G192500 chr2B 84.795 342 30 12 2595 2924 773987644 773987313 1.010000e-84 324.0
12 TraesCS2D01G192500 chr2B 87.444 223 12 11 749 961 195168743 195168527 2.920000e-60 243.0
13 TraesCS2D01G192500 chr2B 82.381 210 28 6 2312 2519 194944556 194944354 1.080000e-39 174.0
14 TraesCS2D01G192500 chr2B 87.755 147 16 2 2536 2681 194992590 194992445 1.400000e-38 171.0
15 TraesCS2D01G192500 chr2B 80.702 228 31 9 2297 2519 195457184 195457403 6.510000e-37 165.0
16 TraesCS2D01G192500 chr2B 81.977 172 19 6 709 876 195060211 195060048 5.100000e-28 135.0
17 TraesCS2D01G192500 chr2B 78.926 242 17 9 756 995 195006329 195006120 1.830000e-27 134.0
18 TraesCS2D01G192500 chr2B 93.939 66 4 0 1188 1253 194952865 194952800 1.860000e-17 100.0
19 TraesCS2D01G192500 chr2B 97.959 49 1 0 272 320 195007659 195007611 5.210000e-13 86.1
20 TraesCS2D01G192500 chr2B 92.000 50 1 1 995 1041 195006100 195006051 1.890000e-07 67.6
21 TraesCS2D01G192500 chr2A 88.154 1013 77 16 1502 2485 165004144 165005142 0.000000e+00 1166.0
22 TraesCS2D01G192500 chr2A 93.402 682 32 10 747 1418 165003437 165004115 0.000000e+00 998.0
23 TraesCS2D01G192500 chr2A 78.038 1111 130 69 1171 2228 165009184 165010233 1.950000e-166 595.0
24 TraesCS2D01G192500 chr2A 76.877 1172 151 56 1135 2240 164768218 164767101 1.190000e-153 553.0
25 TraesCS2D01G192500 chr2A 88.278 418 39 6 2521 2932 164766194 164765781 2.630000e-135 492.0
26 TraesCS2D01G192500 chr2A 86.154 260 23 7 2533 2789 165010669 165010918 4.820000e-68 268.0
27 TraesCS2D01G192500 chr2A 81.395 344 36 15 365 691 164998755 164999087 3.750000e-64 255.0
28 TraesCS2D01G192500 chr2A 85.000 260 28 6 2533 2789 165017652 165017903 1.350000e-63 254.0
29 TraesCS2D01G192500 chr2A 83.737 289 21 12 410 686 164876814 164877088 1.750000e-62 250.0
30 TraesCS2D01G192500 chr2A 81.553 309 29 12 2627 2932 165230266 165230549 2.270000e-56 230.0
31 TraesCS2D01G192500 chr2A 82.353 255 35 7 2268 2519 165010236 165010483 2.290000e-51 213.0
32 TraesCS2D01G192500 chr2A 86.432 199 19 6 83 275 673059326 673059522 8.240000e-51 211.0
33 TraesCS2D01G192500 chr2A 86.387 191 22 3 89 276 9137631 9137820 3.830000e-49 206.0
34 TraesCS2D01G192500 chr2A 83.556 225 23 9 272 485 165000656 165000877 6.410000e-47 198.0
35 TraesCS2D01G192500 chr2A 91.045 134 12 0 2799 2932 165011271 165011404 6.460000e-42 182.0
36 TraesCS2D01G192500 chr2A 87.013 154 16 3 121 274 9137912 9138061 1.400000e-38 171.0
37 TraesCS2D01G192500 chr2A 86.923 130 12 4 2518 2642 165114696 165114825 1.100000e-29 141.0
38 TraesCS2D01G192500 chr2A 93.548 93 6 0 1 93 165000568 165000660 3.940000e-29 139.0
39 TraesCS2D01G192500 chr2A 85.882 85 7 4 879 961 164980863 164980944 5.210000e-13 86.1
40 TraesCS2D01G192500 chr2A 100.000 38 0 0 1443 1480 165004107 165004144 1.460000e-08 71.3
41 TraesCS2D01G192500 chr2A 95.238 42 2 0 648 689 165003100 165003141 1.890000e-07 67.6
42 TraesCS2D01G192500 chr3B 87.640 267 18 7 2595 2850 131506374 131506112 2.210000e-76 296.0
43 TraesCS2D01G192500 chr3B 85.714 91 10 3 2837 2924 131506093 131506003 3.110000e-15 93.5
44 TraesCS2D01G192500 chr3D 83.486 327 21 14 2523 2849 131228437 131228730 1.040000e-69 274.0
45 TraesCS2D01G192500 chr3D 79.245 159 20 8 2075 2229 131227924 131228073 6.690000e-17 99.0
46 TraesCS2D01G192500 chr3D 85.333 75 5 2 1863 1937 131227626 131227694 4.060000e-09 73.1
47 TraesCS2D01G192500 chr6B 89.840 187 17 1 89 275 440533735 440533919 3.780000e-59 239.0
48 TraesCS2D01G192500 chr6B 82.609 184 29 3 91 272 678342601 678342783 3.030000e-35 159.0
49 TraesCS2D01G192500 chr7D 87.831 189 19 3 88 276 322360437 322360621 4.920000e-53 219.0
50 TraesCS2D01G192500 chr7D 85.106 188 21 3 89 275 37274287 37274468 4.990000e-43 185.0
51 TraesCS2D01G192500 chr7D 79.861 144 18 6 2089 2229 216469321 216469456 8.660000e-16 95.3
52 TraesCS2D01G192500 chr7D 75.814 215 16 18 1863 2067 216469087 216469275 3.140000e-10 76.8
53 TraesCS2D01G192500 chr6D 87.113 194 21 3 89 279 37664541 37664349 1.770000e-52 217.0
54 TraesCS2D01G192500 chr4B 83.333 186 22 7 99 278 429609599 429609417 2.340000e-36 163.0
55 TraesCS2D01G192500 chr4D 74.257 404 33 29 1863 2229 111556218 111556587 1.440000e-18 104.0
56 TraesCS2D01G192500 chr7A 80.556 144 17 6 2089 2229 697134009 697134144 1.860000e-17 100.0
57 TraesCS2D01G192500 chr6A 80.556 144 17 6 2089 2229 4623836 4623971 1.860000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G192500 chr2D 136519415 136522348 2933 True 5419.000000 5419 100.000000 1 2934 1 chr2D.!!$R2 2933
1 TraesCS2D01G192500 chr2D 136754486 136756279 1793 False 487.500000 649 83.755500 1135 2849 2 chr2D.!!$F1 1714
2 TraesCS2D01G192500 chr2B 195456054 195457403 1349 False 388.500000 612 79.230500 1135 2519 2 chr2B.!!$F1 1384
3 TraesCS2D01G192500 chr2B 195004757 195007659 2902 True 376.675000 1219 88.592000 272 2235 4 chr2B.!!$R7 1963
4 TraesCS2D01G192500 chr2B 194992445 194995877 3432 True 330.500000 490 83.278500 1171 2681 2 chr2B.!!$R6 1510
5 TraesCS2D01G192500 chr2B 194943835 194944556 721 True 262.500000 351 83.965000 2312 2877 2 chr2B.!!$R4 565
6 TraesCS2D01G192500 chr2B 194950235 194952865 2630 True 220.000000 340 87.857500 1188 1808 2 chr2B.!!$R5 620
7 TraesCS2D01G192500 chr2A 164765781 164768218 2437 True 522.500000 553 82.577500 1135 2932 2 chr2A.!!$R1 1797
8 TraesCS2D01G192500 chr2A 164998755 165005142 6387 False 413.557143 1166 90.756143 1 2485 7 chr2A.!!$F8 2484
9 TraesCS2D01G192500 chr2A 165009184 165011404 2220 False 314.500000 595 84.397500 1171 2932 4 chr2A.!!$F9 1761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 2756 0.031314 CTCTGTCTATGCGCCATCGT 59.969 55.0 4.18 0.0 38.14 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 8954 1.003118 TGTCCCCCGAATGAAGTCAAG 59.997 52.381 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 1891 1.198178 GGAGATGCGCCGTTTTGTTTA 59.802 47.619 4.18 0.00 0.00 2.01
86 1900 5.032220 GCGCCGTTTTGTTTAATTAGCTAT 58.968 37.500 0.00 0.00 0.00 2.97
87 1901 6.183360 TGCGCCGTTTTGTTTAATTAGCTATA 60.183 34.615 4.18 0.00 0.00 1.31
106 1920 7.680730 AGCTATATTAGACCTTGTACAATGGG 58.319 38.462 20.95 16.79 0.00 4.00
107 1921 7.512746 AGCTATATTAGACCTTGTACAATGGGA 59.487 37.037 18.16 6.31 0.00 4.37
108 1922 7.819900 GCTATATTAGACCTTGTACAATGGGAG 59.180 40.741 18.16 3.01 0.00 4.30
109 1923 7.931015 ATATTAGACCTTGTACAATGGGAGA 57.069 36.000 18.16 7.25 0.00 3.71
110 1924 6.831664 ATTAGACCTTGTACAATGGGAGAT 57.168 37.500 18.16 7.75 0.00 2.75
111 1925 4.494091 AGACCTTGTACAATGGGAGATG 57.506 45.455 18.16 1.25 0.00 2.90
112 1926 2.945668 GACCTTGTACAATGGGAGATGC 59.054 50.000 18.16 2.00 0.00 3.91
113 1927 2.578021 ACCTTGTACAATGGGAGATGCT 59.422 45.455 18.16 0.00 0.00 3.79
114 1928 3.010584 ACCTTGTACAATGGGAGATGCTT 59.989 43.478 18.16 0.00 0.00 3.91
115 1929 4.227300 ACCTTGTACAATGGGAGATGCTTA 59.773 41.667 18.16 0.00 0.00 3.09
116 1930 4.818546 CCTTGTACAATGGGAGATGCTTAG 59.181 45.833 9.13 0.00 0.00 2.18
117 1931 5.396772 CCTTGTACAATGGGAGATGCTTAGA 60.397 44.000 9.13 0.00 0.00 2.10
118 1932 5.282055 TGTACAATGGGAGATGCTTAGAG 57.718 43.478 0.00 0.00 0.00 2.43
119 1933 3.853355 ACAATGGGAGATGCTTAGAGG 57.147 47.619 0.00 0.00 0.00 3.69
120 1934 3.387962 ACAATGGGAGATGCTTAGAGGA 58.612 45.455 0.00 0.00 0.00 3.71
121 1935 3.390639 ACAATGGGAGATGCTTAGAGGAG 59.609 47.826 0.00 0.00 0.00 3.69
122 1936 2.094100 TGGGAGATGCTTAGAGGAGG 57.906 55.000 0.00 0.00 0.00 4.30
123 1937 1.292242 TGGGAGATGCTTAGAGGAGGT 59.708 52.381 0.00 0.00 0.00 3.85
124 1938 1.691434 GGGAGATGCTTAGAGGAGGTG 59.309 57.143 0.00 0.00 0.00 4.00
125 1939 1.069978 GGAGATGCTTAGAGGAGGTGC 59.930 57.143 0.00 0.00 0.00 5.01
126 1940 2.038659 GAGATGCTTAGAGGAGGTGCT 58.961 52.381 0.00 0.00 0.00 4.40
127 1941 2.433970 GAGATGCTTAGAGGAGGTGCTT 59.566 50.000 0.00 0.00 0.00 3.91
128 1942 3.639094 GAGATGCTTAGAGGAGGTGCTTA 59.361 47.826 0.00 0.00 0.00 3.09
129 1943 4.033709 AGATGCTTAGAGGAGGTGCTTAA 58.966 43.478 0.00 0.00 0.00 1.85
130 1944 4.471386 AGATGCTTAGAGGAGGTGCTTAAA 59.529 41.667 0.00 0.00 0.00 1.52
131 1945 4.207891 TGCTTAGAGGAGGTGCTTAAAG 57.792 45.455 0.00 0.00 0.00 1.85
132 1946 3.838317 TGCTTAGAGGAGGTGCTTAAAGA 59.162 43.478 0.00 0.00 0.00 2.52
133 1947 4.286032 TGCTTAGAGGAGGTGCTTAAAGAA 59.714 41.667 0.00 0.00 0.00 2.52
134 1948 5.221843 TGCTTAGAGGAGGTGCTTAAAGAAA 60.222 40.000 0.00 0.00 0.00 2.52
135 1949 5.883115 GCTTAGAGGAGGTGCTTAAAGAAAT 59.117 40.000 0.00 0.00 0.00 2.17
136 1950 7.048512 GCTTAGAGGAGGTGCTTAAAGAAATA 58.951 38.462 0.00 0.00 0.00 1.40
137 1951 7.553044 GCTTAGAGGAGGTGCTTAAAGAAATAA 59.447 37.037 0.00 0.00 0.00 1.40
138 1952 9.449719 CTTAGAGGAGGTGCTTAAAGAAATAAA 57.550 33.333 0.00 0.00 0.00 1.40
139 1953 7.689446 AGAGGAGGTGCTTAAAGAAATAAAC 57.311 36.000 0.00 0.00 0.00 2.01
140 1954 6.659668 AGAGGAGGTGCTTAAAGAAATAAACC 59.340 38.462 0.00 0.00 0.00 3.27
141 1955 6.311735 AGGAGGTGCTTAAAGAAATAAACCA 58.688 36.000 0.00 0.00 0.00 3.67
142 1956 6.434340 AGGAGGTGCTTAAAGAAATAAACCAG 59.566 38.462 0.00 0.00 0.00 4.00
143 1957 6.433093 GGAGGTGCTTAAAGAAATAAACCAGA 59.567 38.462 0.00 0.00 0.00 3.86
144 1958 7.122799 GGAGGTGCTTAAAGAAATAAACCAGAT 59.877 37.037 0.00 0.00 0.00 2.90
145 1959 8.422577 AGGTGCTTAAAGAAATAAACCAGATT 57.577 30.769 0.00 0.00 0.00 2.40
146 1960 8.870116 AGGTGCTTAAAGAAATAAACCAGATTT 58.130 29.630 0.00 0.00 0.00 2.17
147 1961 9.489084 GGTGCTTAAAGAAATAAACCAGATTTT 57.511 29.630 0.00 0.00 0.00 1.82
149 1963 9.705290 TGCTTAAAGAAATAAACCAGATTTTCC 57.295 29.630 0.00 0.00 0.00 3.13
150 1964 9.929180 GCTTAAAGAAATAAACCAGATTTTCCT 57.071 29.630 0.00 0.00 0.00 3.36
155 1969 9.929180 AAGAAATAAACCAGATTTTCCTTAAGC 57.071 29.630 0.00 0.00 0.00 3.09
156 1970 9.088987 AGAAATAAACCAGATTTTCCTTAAGCA 57.911 29.630 0.00 0.00 0.00 3.91
157 1971 9.140286 GAAATAAACCAGATTTTCCTTAAGCAC 57.860 33.333 0.00 0.00 0.00 4.40
158 1972 5.468540 AAACCAGATTTTCCTTAAGCACC 57.531 39.130 0.00 0.00 0.00 5.01
159 1973 3.081804 ACCAGATTTTCCTTAAGCACCG 58.918 45.455 0.00 0.00 0.00 4.94
160 1974 2.423538 CCAGATTTTCCTTAAGCACCGG 59.576 50.000 0.00 0.00 0.00 5.28
161 1975 3.081804 CAGATTTTCCTTAAGCACCGGT 58.918 45.455 0.00 0.00 0.00 5.28
162 1976 3.081804 AGATTTTCCTTAAGCACCGGTG 58.918 45.455 30.66 30.66 0.00 4.94
175 1989 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
176 1990 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
177 1991 2.014128 CCGGTGCTTATTTGTACAGGG 58.986 52.381 0.00 0.00 35.20 4.45
178 1992 2.617021 CCGGTGCTTATTTGTACAGGGT 60.617 50.000 0.00 0.00 35.20 4.34
179 1993 2.676342 CGGTGCTTATTTGTACAGGGTC 59.324 50.000 0.00 0.00 0.00 4.46
180 1994 2.676342 GGTGCTTATTTGTACAGGGTCG 59.324 50.000 0.00 0.00 0.00 4.79
181 1995 3.332034 GTGCTTATTTGTACAGGGTCGT 58.668 45.455 0.00 0.00 0.00 4.34
182 1996 3.370061 GTGCTTATTTGTACAGGGTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
183 1997 3.259876 TGCTTATTTGTACAGGGTCGTCT 59.740 43.478 0.00 0.00 0.00 4.18
184 1998 3.864003 GCTTATTTGTACAGGGTCGTCTC 59.136 47.826 0.00 0.00 0.00 3.36
185 1999 4.381718 GCTTATTTGTACAGGGTCGTCTCT 60.382 45.833 0.00 0.00 0.00 3.10
186 2000 3.870633 ATTTGTACAGGGTCGTCTCTC 57.129 47.619 0.00 0.00 0.00 3.20
187 2001 1.542492 TTGTACAGGGTCGTCTCTCC 58.458 55.000 0.00 0.00 0.00 3.71
188 2002 0.697079 TGTACAGGGTCGTCTCTCCT 59.303 55.000 0.00 0.00 0.00 3.69
190 2004 4.425099 CAGGGTCGTCTCTCCTGT 57.575 61.111 0.00 0.00 42.17 4.00
191 2005 3.571748 CAGGGTCGTCTCTCCTGTA 57.428 57.895 0.00 0.00 42.17 2.74
192 2006 1.835494 CAGGGTCGTCTCTCCTGTAA 58.165 55.000 0.00 0.00 42.17 2.41
193 2007 2.168496 CAGGGTCGTCTCTCCTGTAAA 58.832 52.381 0.00 0.00 42.17 2.01
194 2008 2.561419 CAGGGTCGTCTCTCCTGTAAAA 59.439 50.000 0.00 0.00 42.17 1.52
195 2009 3.006537 CAGGGTCGTCTCTCCTGTAAAAA 59.993 47.826 0.00 0.00 42.17 1.94
196 2010 3.838903 AGGGTCGTCTCTCCTGTAAAAAT 59.161 43.478 0.00 0.00 0.00 1.82
197 2011 5.021458 AGGGTCGTCTCTCCTGTAAAAATA 58.979 41.667 0.00 0.00 0.00 1.40
198 2012 5.127356 AGGGTCGTCTCTCCTGTAAAAATAG 59.873 44.000 0.00 0.00 0.00 1.73
199 2013 4.804665 GGTCGTCTCTCCTGTAAAAATAGC 59.195 45.833 0.00 0.00 0.00 2.97
200 2014 4.804665 GTCGTCTCTCCTGTAAAAATAGCC 59.195 45.833 0.00 0.00 0.00 3.93
201 2015 4.464951 TCGTCTCTCCTGTAAAAATAGCCA 59.535 41.667 0.00 0.00 0.00 4.75
202 2016 4.567159 CGTCTCTCCTGTAAAAATAGCCAC 59.433 45.833 0.00 0.00 0.00 5.01
203 2017 4.876679 GTCTCTCCTGTAAAAATAGCCACC 59.123 45.833 0.00 0.00 0.00 4.61
204 2018 3.869065 TCTCCTGTAAAAATAGCCACCG 58.131 45.455 0.00 0.00 0.00 4.94
205 2019 2.943033 CTCCTGTAAAAATAGCCACCGG 59.057 50.000 0.00 0.00 0.00 5.28
206 2020 2.306512 TCCTGTAAAAATAGCCACCGGT 59.693 45.455 0.00 0.00 0.00 5.28
207 2021 2.422127 CCTGTAAAAATAGCCACCGGTG 59.578 50.000 28.26 28.26 0.00 4.94
208 2022 1.813786 TGTAAAAATAGCCACCGGTGC 59.186 47.619 29.75 23.02 0.00 5.01
209 2023 2.089201 GTAAAAATAGCCACCGGTGCT 58.911 47.619 29.75 28.08 42.81 4.40
210 2024 1.627864 AAAAATAGCCACCGGTGCTT 58.372 45.000 29.75 20.24 40.23 3.91
211 2025 1.173913 AAAATAGCCACCGGTGCTTC 58.826 50.000 29.75 18.85 40.23 3.86
212 2026 0.037590 AAATAGCCACCGGTGCTTCA 59.962 50.000 29.75 15.17 40.23 3.02
213 2027 0.392998 AATAGCCACCGGTGCTTCAG 60.393 55.000 29.75 16.02 40.23 3.02
214 2028 1.264749 ATAGCCACCGGTGCTTCAGA 61.265 55.000 29.75 14.16 40.23 3.27
215 2029 1.476845 TAGCCACCGGTGCTTCAGAA 61.477 55.000 29.75 11.12 40.23 3.02
216 2030 1.896660 GCCACCGGTGCTTCAGAAA 60.897 57.895 29.75 0.00 0.00 2.52
217 2031 1.452145 GCCACCGGTGCTTCAGAAAA 61.452 55.000 29.75 0.00 0.00 2.29
218 2032 1.247567 CCACCGGTGCTTCAGAAAAT 58.752 50.000 29.75 0.00 0.00 1.82
219 2033 1.200020 CCACCGGTGCTTCAGAAAATC 59.800 52.381 29.75 0.00 0.00 2.17
220 2034 2.154462 CACCGGTGCTTCAGAAAATCT 58.846 47.619 24.02 0.00 0.00 2.40
221 2035 2.160417 CACCGGTGCTTCAGAAAATCTC 59.840 50.000 24.02 0.00 0.00 2.75
222 2036 1.394917 CCGGTGCTTCAGAAAATCTCG 59.605 52.381 0.00 0.00 0.00 4.04
223 2037 1.394917 CGGTGCTTCAGAAAATCTCGG 59.605 52.381 0.00 0.00 0.00 4.63
224 2038 2.427506 GGTGCTTCAGAAAATCTCGGT 58.572 47.619 0.00 0.00 0.00 4.69
225 2039 2.814336 GGTGCTTCAGAAAATCTCGGTT 59.186 45.455 0.00 0.00 0.00 4.44
226 2040 3.253432 GGTGCTTCAGAAAATCTCGGTTT 59.747 43.478 0.00 0.00 0.00 3.27
227 2041 4.454504 GGTGCTTCAGAAAATCTCGGTTTA 59.545 41.667 0.00 0.00 0.00 2.01
228 2042 5.123979 GGTGCTTCAGAAAATCTCGGTTTAT 59.876 40.000 0.00 0.00 0.00 1.40
229 2043 6.349363 GGTGCTTCAGAAAATCTCGGTTTATT 60.349 38.462 0.00 0.00 0.00 1.40
230 2044 7.084486 GTGCTTCAGAAAATCTCGGTTTATTT 58.916 34.615 0.00 0.00 0.00 1.40
231 2045 7.271438 GTGCTTCAGAAAATCTCGGTTTATTTC 59.729 37.037 0.00 0.00 0.00 2.17
232 2046 7.174946 TGCTTCAGAAAATCTCGGTTTATTTCT 59.825 33.333 0.00 0.00 40.06 2.52
233 2047 7.694367 GCTTCAGAAAATCTCGGTTTATTTCTC 59.306 37.037 0.00 0.00 38.04 2.87
234 2048 8.848474 TTCAGAAAATCTCGGTTTATTTCTCT 57.152 30.769 0.00 0.00 38.04 3.10
235 2049 9.938280 TTCAGAAAATCTCGGTTTATTTCTCTA 57.062 29.630 0.00 0.00 38.04 2.43
236 2050 9.938280 TCAGAAAATCTCGGTTTATTTCTCTAA 57.062 29.630 0.00 0.00 38.04 2.10
238 2052 8.884726 AGAAAATCTCGGTTTATTTCTCTAAGC 58.115 33.333 0.00 0.00 35.96 3.09
239 2053 8.561738 AAAATCTCGGTTTATTTCTCTAAGCA 57.438 30.769 0.00 0.00 0.00 3.91
240 2054 7.541122 AATCTCGGTTTATTTCTCTAAGCAC 57.459 36.000 0.00 0.00 0.00 4.40
241 2055 5.416947 TCTCGGTTTATTTCTCTAAGCACC 58.583 41.667 0.00 0.00 0.00 5.01
242 2056 4.510571 TCGGTTTATTTCTCTAAGCACCC 58.489 43.478 0.00 0.00 0.00 4.61
243 2057 3.626217 CGGTTTATTTCTCTAAGCACCCC 59.374 47.826 0.00 0.00 0.00 4.95
244 2058 4.625564 CGGTTTATTTCTCTAAGCACCCCT 60.626 45.833 0.00 0.00 0.00 4.79
245 2059 4.882427 GGTTTATTTCTCTAAGCACCCCTC 59.118 45.833 0.00 0.00 0.00 4.30
246 2060 5.339282 GGTTTATTTCTCTAAGCACCCCTCT 60.339 44.000 0.00 0.00 0.00 3.69
247 2061 6.126854 GGTTTATTTCTCTAAGCACCCCTCTA 60.127 42.308 0.00 0.00 0.00 2.43
248 2062 7.336396 GTTTATTTCTCTAAGCACCCCTCTAA 58.664 38.462 0.00 0.00 0.00 2.10
249 2063 5.622346 ATTTCTCTAAGCACCCCTCTAAG 57.378 43.478 0.00 0.00 0.00 2.18
250 2064 2.389715 TCTCTAAGCACCCCTCTAAGC 58.610 52.381 0.00 0.00 0.00 3.09
251 2065 2.111384 CTCTAAGCACCCCTCTAAGCA 58.889 52.381 0.00 0.00 0.00 3.91
252 2066 2.703007 CTCTAAGCACCCCTCTAAGCAT 59.297 50.000 0.00 0.00 0.00 3.79
253 2067 2.700897 TCTAAGCACCCCTCTAAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
254 2068 1.589414 AAGCACCCCTCTAAGCATCT 58.411 50.000 0.00 0.00 0.00 2.90
255 2069 1.127343 AGCACCCCTCTAAGCATCTC 58.873 55.000 0.00 0.00 0.00 2.75
256 2070 0.107643 GCACCCCTCTAAGCATCTCC 59.892 60.000 0.00 0.00 0.00 3.71
257 2071 0.761802 CACCCCTCTAAGCATCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
258 2072 0.343372 ACCCCTCTAAGCATCTCCCA 59.657 55.000 0.00 0.00 0.00 4.37
259 2073 1.061033 ACCCCTCTAAGCATCTCCCAT 60.061 52.381 0.00 0.00 0.00 4.00
260 2074 2.061061 CCCCTCTAAGCATCTCCCATT 58.939 52.381 0.00 0.00 0.00 3.16
261 2075 2.224719 CCCCTCTAAGCATCTCCCATTG 60.225 54.545 0.00 0.00 0.00 2.82
262 2076 2.441001 CCCTCTAAGCATCTCCCATTGT 59.559 50.000 0.00 0.00 0.00 2.71
263 2077 3.648067 CCCTCTAAGCATCTCCCATTGTA 59.352 47.826 0.00 0.00 0.00 2.41
264 2078 4.503991 CCCTCTAAGCATCTCCCATTGTAC 60.504 50.000 0.00 0.00 0.00 2.90
265 2079 4.101585 CCTCTAAGCATCTCCCATTGTACA 59.898 45.833 0.00 0.00 0.00 2.90
266 2080 5.396772 CCTCTAAGCATCTCCCATTGTACAA 60.397 44.000 11.41 11.41 0.00 2.41
267 2081 5.674525 TCTAAGCATCTCCCATTGTACAAG 58.325 41.667 14.65 6.30 0.00 3.16
268 2082 3.287867 AGCATCTCCCATTGTACAAGG 57.712 47.619 14.65 13.92 0.00 3.61
269 2083 1.678101 GCATCTCCCATTGTACAAGGC 59.322 52.381 14.66 0.00 0.00 4.35
270 2084 2.301346 CATCTCCCATTGTACAAGGCC 58.699 52.381 14.66 0.00 0.00 5.19
286 2100 5.887754 ACAAGGCCTTAGAAGTTTGGAATA 58.112 37.500 20.00 0.00 0.00 1.75
341 2429 8.554528 TGCTAGTATGTATGTTACTTCGTACTC 58.445 37.037 0.00 0.00 32.35 2.59
342 2430 8.772705 GCTAGTATGTATGTTACTTCGTACTCT 58.227 37.037 0.00 0.00 32.35 3.24
345 2433 9.050601 AGTATGTATGTTACTTCGTACTCTACC 57.949 37.037 0.00 0.00 32.80 3.18
346 2434 9.050601 GTATGTATGTTACTTCGTACTCTACCT 57.949 37.037 0.00 0.00 32.80 3.08
347 2435 7.312657 TGTATGTTACTTCGTACTCTACCTG 57.687 40.000 0.00 0.00 32.80 4.00
348 2436 5.831702 ATGTTACTTCGTACTCTACCTGG 57.168 43.478 0.00 0.00 0.00 4.45
349 2437 4.012374 TGTTACTTCGTACTCTACCTGGG 58.988 47.826 0.00 0.00 0.00 4.45
350 2438 2.895242 ACTTCGTACTCTACCTGGGT 57.105 50.000 0.00 0.00 0.00 4.51
351 2439 2.720915 ACTTCGTACTCTACCTGGGTC 58.279 52.381 0.00 0.00 0.00 4.46
352 2440 2.022934 CTTCGTACTCTACCTGGGTCC 58.977 57.143 0.00 0.00 0.00 4.46
355 2443 1.749634 CGTACTCTACCTGGGTCCTTG 59.250 57.143 0.00 0.00 0.00 3.61
358 2446 0.909610 CTCTACCTGGGTCCTTGCCA 60.910 60.000 0.00 0.00 0.00 4.92
381 2469 5.527511 TTTTGTTGTTGTCTTGTTGCATG 57.472 34.783 0.00 0.00 0.00 4.06
382 2470 3.865011 TGTTGTTGTCTTGTTGCATGT 57.135 38.095 0.00 0.00 0.00 3.21
429 2521 6.603599 GCTTGGTATGAAGTTAGAAGGGATTT 59.396 38.462 0.00 0.00 0.00 2.17
488 2580 5.767816 GTTGGAAACTTGGAATGTACAGT 57.232 39.130 0.33 0.00 45.32 3.55
490 2582 7.448748 GTTGGAAACTTGGAATGTACAGTAT 57.551 36.000 0.33 0.00 45.32 2.12
494 2635 6.072175 GGAAACTTGGAATGTACAGTATGCAA 60.072 38.462 0.33 7.21 42.53 4.08
497 2638 8.574251 AACTTGGAATGTACAGTATGCAATAA 57.426 30.769 11.54 0.00 42.53 1.40
530 2676 5.573337 AATTTTCATGGTTAGCTGCTCTC 57.427 39.130 4.91 0.00 0.00 3.20
540 2713 2.278466 CTGCTCTCTGCGCGTAGG 60.278 66.667 24.11 14.50 46.63 3.18
550 2723 0.668096 TGCGCGTAGGTCGTTTCATT 60.668 50.000 8.43 0.00 42.13 2.57
551 2724 0.441145 GCGCGTAGGTCGTTTCATTT 59.559 50.000 8.43 0.00 42.13 2.32
552 2725 1.136169 GCGCGTAGGTCGTTTCATTTT 60.136 47.619 8.43 0.00 42.13 1.82
566 2740 5.291971 GTTTCATTTTGCAATCACCTCTGT 58.708 37.500 0.00 0.00 0.00 3.41
575 2751 0.390860 ATCACCTCTGTCTATGCGCC 59.609 55.000 4.18 0.00 0.00 6.53
580 2756 0.031314 CTCTGTCTATGCGCCATCGT 59.969 55.000 4.18 0.00 38.14 3.73
584 2760 1.135333 TGTCTATGCGCCATCGTAACA 59.865 47.619 4.18 0.00 38.14 2.41
586 2762 0.508641 CTATGCGCCATCGTAACAGC 59.491 55.000 4.18 0.00 38.14 4.40
588 2764 1.705337 ATGCGCCATCGTAACAGCAC 61.705 55.000 4.18 0.00 37.44 4.40
589 2765 2.387445 GCGCCATCGTAACAGCACA 61.387 57.895 0.00 0.00 38.14 4.57
590 2766 1.906994 GCGCCATCGTAACAGCACAA 61.907 55.000 0.00 0.00 38.14 3.33
591 2767 0.179225 CGCCATCGTAACAGCACAAC 60.179 55.000 0.00 0.00 0.00 3.32
592 2768 0.871722 GCCATCGTAACAGCACAACA 59.128 50.000 0.00 0.00 0.00 3.33
593 2769 1.399727 GCCATCGTAACAGCACAACAC 60.400 52.381 0.00 0.00 0.00 3.32
594 2770 1.196808 CCATCGTAACAGCACAACACC 59.803 52.381 0.00 0.00 0.00 4.16
595 2771 2.143122 CATCGTAACAGCACAACACCT 58.857 47.619 0.00 0.00 0.00 4.00
597 2773 2.746269 TCGTAACAGCACAACACCTAC 58.254 47.619 0.00 0.00 0.00 3.18
601 2777 2.894763 ACAGCACAACACCTACGTTA 57.105 45.000 0.00 0.00 0.00 3.18
602 2778 3.182341 ACAGCACAACACCTACGTTAA 57.818 42.857 0.00 0.00 0.00 2.01
605 2781 3.805422 CAGCACAACACCTACGTTAAAGA 59.195 43.478 0.00 0.00 0.00 2.52
606 2782 4.056050 AGCACAACACCTACGTTAAAGAG 58.944 43.478 0.00 0.00 0.00 2.85
608 2784 4.624015 CACAACACCTACGTTAAAGAGGA 58.376 43.478 8.31 0.00 34.24 3.71
609 2785 4.446719 CACAACACCTACGTTAAAGAGGAC 59.553 45.833 8.31 0.00 34.24 3.85
610 2786 4.343239 ACAACACCTACGTTAAAGAGGACT 59.657 41.667 8.31 0.00 34.24 3.85
611 2787 5.163374 ACAACACCTACGTTAAAGAGGACTT 60.163 40.000 8.31 0.00 38.05 3.01
612 2788 4.879598 ACACCTACGTTAAAGAGGACTTG 58.120 43.478 8.31 0.00 36.39 3.16
613 2789 4.586001 ACACCTACGTTAAAGAGGACTTGA 59.414 41.667 8.31 0.00 36.39 3.02
628 4947 7.060421 AGAGGACTTGATTTTCTTTAACCACA 58.940 34.615 0.00 0.00 0.00 4.17
644 4963 8.506168 TTTAACCACATCATATCAGTTCCTTC 57.494 34.615 0.00 0.00 0.00 3.46
645 4964 5.698741 ACCACATCATATCAGTTCCTTCA 57.301 39.130 0.00 0.00 0.00 3.02
647 4966 6.666678 ACCACATCATATCAGTTCCTTCATT 58.333 36.000 0.00 0.00 0.00 2.57
648 4967 7.121382 ACCACATCATATCAGTTCCTTCATTT 58.879 34.615 0.00 0.00 0.00 2.32
649 4968 7.067859 ACCACATCATATCAGTTCCTTCATTTG 59.932 37.037 0.00 0.00 0.00 2.32
689 5008 6.185511 TCTCTGGTTCTATCGTTAAAGAGGA 58.814 40.000 0.00 0.00 32.59 3.71
707 5061 7.742556 AAGAGGACTTGATTTTCTCTTTCTG 57.257 36.000 0.00 0.00 40.59 3.02
742 5266 3.366577 GCTTTTACCATACCAAACCACCG 60.367 47.826 0.00 0.00 0.00 4.94
752 5309 0.953471 CAAACCACCGCAATCCTCGA 60.953 55.000 0.00 0.00 0.00 4.04
773 5332 8.014517 CCTCGATTCAGAAAAGAAAAGAGAAAG 58.985 37.037 0.00 0.00 37.32 2.62
917 5480 1.337635 GGCTACATAGGCAGCAGCTAG 60.338 57.143 1.49 0.00 46.94 3.42
921 5484 0.319383 CATAGGCAGCAGCTAGACCG 60.319 60.000 0.00 0.00 41.70 4.79
984 5547 3.904136 ACAAGAAAAATCCTGCGTCTG 57.096 42.857 0.00 0.00 0.00 3.51
1026 5612 3.251004 CCGGTAAGCTTGCAATTATCCTC 59.749 47.826 16.70 0.00 0.00 3.71
1041 5627 2.180204 CCTCCATGCCGCTTTACCG 61.180 63.158 0.00 0.00 0.00 4.02
1122 5792 6.066054 TGTTCTTGTGATTTATTTGCGTCA 57.934 33.333 0.00 0.00 0.00 4.35
1165 5837 4.634004 TGCTATTTCCTTGTCATGTTACCG 59.366 41.667 0.00 0.00 0.00 4.02
1303 8059 1.002069 AGGGTGAGCAATTCCATCCA 58.998 50.000 0.00 0.00 36.04 3.41
1334 8096 1.464997 GCTCCTTCTTGCGTTCGATTT 59.535 47.619 0.00 0.00 0.00 2.17
1344 8106 4.632538 TGCGTTCGATTTCATCTCTCTA 57.367 40.909 0.00 0.00 0.00 2.43
1347 8109 4.085312 GCGTTCGATTTCATCTCTCTAAGC 60.085 45.833 0.00 0.00 0.00 3.09
1556 8318 2.147150 GTCACCTGCTTCTTCTTCACC 58.853 52.381 0.00 0.00 0.00 4.02
1567 8329 0.599204 TTCTTCACCTTCGTCACCGC 60.599 55.000 0.00 0.00 0.00 5.68
1698 8460 3.945921 CGTCCTGTTCTACCTGATCTACA 59.054 47.826 0.00 0.00 0.00 2.74
1839 8615 7.877003 TCAGTTCTTTGTTCTGTGTTTGTTTA 58.123 30.769 0.00 0.00 0.00 2.01
1850 8642 9.944663 GTTCTGTGTTTGTTTATTCTCATACAA 57.055 29.630 0.00 0.00 30.35 2.41
1888 8682 6.126911 TGTTTGTTTGAGGGAAGGCTTTTAAT 60.127 34.615 0.00 0.00 0.00 1.40
1947 8767 1.658717 CTTAGCTGCCGGATCGACG 60.659 63.158 5.05 0.00 0.00 5.12
1949 8769 1.659622 TTAGCTGCCGGATCGACGAA 61.660 55.000 5.05 0.00 35.47 3.85
1977 8797 2.271800 CGAGCATCTTGGTACCTGAAC 58.728 52.381 14.36 8.27 0.00 3.18
1981 8801 3.838317 AGCATCTTGGTACCTGAACTGTA 59.162 43.478 14.36 0.00 0.00 2.74
1993 8827 0.788391 GAACTGTAGCGACCGTTTGG 59.212 55.000 8.07 0.00 33.64 3.28
1994 8828 0.390124 AACTGTAGCGACCGTTTGGA 59.610 50.000 1.03 0.00 39.21 3.53
1995 8829 0.606604 ACTGTAGCGACCGTTTGGAT 59.393 50.000 0.00 0.00 39.21 3.41
1996 8830 1.001633 ACTGTAGCGACCGTTTGGATT 59.998 47.619 0.00 0.00 39.21 3.01
1997 8831 2.073816 CTGTAGCGACCGTTTGGATTT 58.926 47.619 0.00 0.00 39.21 2.17
1998 8832 1.801771 TGTAGCGACCGTTTGGATTTG 59.198 47.619 0.00 0.00 39.21 2.32
2003 8837 1.665735 CGACCGTTTGGATTTGCCTTG 60.666 52.381 0.00 0.00 39.21 3.61
2024 8858 5.943349 TGCTATGGCAGTTTACCTACTTA 57.057 39.130 0.00 0.00 44.28 2.24
2029 8863 8.800332 GCTATGGCAGTTTACCTACTTACTATA 58.200 37.037 0.00 0.00 38.54 1.31
2033 8870 9.347240 TGGCAGTTTACCTACTTACTATACTAG 57.653 37.037 0.00 0.00 0.00 2.57
2093 8954 3.181470 GGTTCTCTATCTGCTGGAAGGAC 60.181 52.174 0.00 0.00 0.00 3.85
2105 8966 3.438434 GCTGGAAGGACTTGACTTCATTC 59.562 47.826 7.39 0.00 44.69 2.67
2114 8975 1.285280 TGACTTCATTCGGGGGACAT 58.715 50.000 0.00 0.00 0.00 3.06
2150 9014 4.025979 CGTCTGTCAGTACCTGTTGTTTTC 60.026 45.833 0.00 0.00 32.61 2.29
2216 9086 6.671605 TGTTGATGGGGATATGATCTTTTCA 58.328 36.000 0.00 0.00 39.12 2.69
2232 9102 4.629200 TCTTTTCATTGCTTGTTTGCGTTT 59.371 33.333 0.00 0.00 35.36 3.60
2269 9139 2.575735 TGATGCCTTGATGGGTAGTCAA 59.424 45.455 0.00 0.00 36.00 3.18
2289 9159 1.995376 TGGATCACTATCGCCTAGCA 58.005 50.000 0.00 0.00 32.44 3.49
2325 9196 3.689347 TGGTTCTTGTTGATGAGGATGG 58.311 45.455 0.00 0.00 0.00 3.51
2343 10454 1.825474 TGGGATCTTCTCTGTTCGGTC 59.175 52.381 0.00 0.00 0.00 4.79
2355 10467 2.232452 CTGTTCGGTCCTCTCTGTGATT 59.768 50.000 0.00 0.00 0.00 2.57
2358 10470 0.247460 CGGTCCTCTCTGTGATTGCA 59.753 55.000 0.00 0.00 0.00 4.08
2373 10487 3.313249 TGATTGCAATCGGTTCTGCTATG 59.687 43.478 29.23 0.00 39.38 2.23
2467 10582 8.359060 AGCTTCAGTTAAGTTAATCATCGATC 57.641 34.615 0.00 0.00 37.53 3.69
2512 10628 8.548025 TGTTCTTATCAGATTCCCATGTTAGAA 58.452 33.333 0.00 0.00 0.00 2.10
2660 12148 2.894126 TCTGACCAGAACAGAGGAAGAC 59.106 50.000 0.00 0.00 39.10 3.01
2673 12161 5.013079 ACAGAGGAAGACATGTCATGGTTAA 59.987 40.000 27.02 0.00 33.60 2.01
2700 12189 2.099141 TGTAGCTGCAGCAAAGTAGG 57.901 50.000 38.24 0.00 45.16 3.18
2709 12198 4.588899 TGCAGCAAAGTAGGTAATGTCAT 58.411 39.130 0.00 0.00 0.00 3.06
2736 12225 9.624373 GGAAGGATATATATGCAACATGAATCT 57.376 33.333 15.67 0.00 0.00 2.40
2779 12268 3.317711 TGCAGGTCGTCACAAATGAAAAT 59.682 39.130 0.00 0.00 36.31 1.82
2790 12279 9.986833 CGTCACAAATGAAAATCTGTCATATAA 57.013 29.630 0.00 0.00 36.31 0.98
2868 12700 8.846211 CCTCTAGGAAATTGTTTTTAGAACACA 58.154 33.333 0.00 0.00 37.39 3.72
2892 12724 7.440556 ACAATCTGCTAGCTTATACACTTGATG 59.559 37.037 17.23 4.70 0.00 3.07
2926 12758 5.410746 ACAAATACACAAGCACATCTCTGAG 59.589 40.000 0.00 0.00 0.00 3.35
2932 12764 5.533903 ACACAAGCACATCTCTGAGAATTTT 59.466 36.000 12.00 0.14 0.00 1.82
2933 12765 5.856986 CACAAGCACATCTCTGAGAATTTTG 59.143 40.000 12.00 13.28 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.593468 TAAGCGCCATCCTCCACAGC 62.593 60.000 2.29 0.00 0.00 4.40
34 1848 0.250640 ATGATCCATCTTCGGCAGGC 60.251 55.000 0.00 0.00 0.00 4.85
86 1900 7.689313 GCATCTCCCATTGTACAAGGTCTAATA 60.689 40.741 18.13 0.54 0.00 0.98
87 1901 6.595682 CATCTCCCATTGTACAAGGTCTAAT 58.404 40.000 18.13 4.91 0.00 1.73
93 1907 3.287867 AGCATCTCCCATTGTACAAGG 57.712 47.619 14.65 13.92 0.00 3.61
94 1908 5.674525 TCTAAGCATCTCCCATTGTACAAG 58.325 41.667 14.65 6.30 0.00 3.16
95 1909 5.396772 CCTCTAAGCATCTCCCATTGTACAA 60.397 44.000 11.41 11.41 0.00 2.41
96 1910 4.101585 CCTCTAAGCATCTCCCATTGTACA 59.898 45.833 0.00 0.00 0.00 2.90
97 1911 4.345257 TCCTCTAAGCATCTCCCATTGTAC 59.655 45.833 0.00 0.00 0.00 2.90
98 1912 4.556697 TCCTCTAAGCATCTCCCATTGTA 58.443 43.478 0.00 0.00 0.00 2.41
99 1913 3.387962 TCCTCTAAGCATCTCCCATTGT 58.612 45.455 0.00 0.00 0.00 2.71
100 1914 3.244491 CCTCCTCTAAGCATCTCCCATTG 60.244 52.174 0.00 0.00 0.00 2.82
101 1915 2.978278 CCTCCTCTAAGCATCTCCCATT 59.022 50.000 0.00 0.00 0.00 3.16
102 1916 2.090267 ACCTCCTCTAAGCATCTCCCAT 60.090 50.000 0.00 0.00 0.00 4.00
103 1917 1.292242 ACCTCCTCTAAGCATCTCCCA 59.708 52.381 0.00 0.00 0.00 4.37
104 1918 1.691434 CACCTCCTCTAAGCATCTCCC 59.309 57.143 0.00 0.00 0.00 4.30
105 1919 1.069978 GCACCTCCTCTAAGCATCTCC 59.930 57.143 0.00 0.00 0.00 3.71
106 1920 2.038659 AGCACCTCCTCTAAGCATCTC 58.961 52.381 0.00 0.00 0.00 2.75
107 1921 2.173126 AGCACCTCCTCTAAGCATCT 57.827 50.000 0.00 0.00 0.00 2.90
108 1922 2.998316 AAGCACCTCCTCTAAGCATC 57.002 50.000 0.00 0.00 0.00 3.91
109 1923 4.471386 TCTTTAAGCACCTCCTCTAAGCAT 59.529 41.667 0.00 0.00 0.00 3.79
110 1924 3.838317 TCTTTAAGCACCTCCTCTAAGCA 59.162 43.478 0.00 0.00 0.00 3.91
111 1925 4.473477 TCTTTAAGCACCTCCTCTAAGC 57.527 45.455 0.00 0.00 0.00 3.09
112 1926 9.449719 TTTATTTCTTTAAGCACCTCCTCTAAG 57.550 33.333 0.00 0.00 0.00 2.18
113 1927 9.227777 GTTTATTTCTTTAAGCACCTCCTCTAA 57.772 33.333 0.00 0.00 0.00 2.10
114 1928 7.827729 GGTTTATTTCTTTAAGCACCTCCTCTA 59.172 37.037 0.00 0.00 0.00 2.43
115 1929 6.659668 GGTTTATTTCTTTAAGCACCTCCTCT 59.340 38.462 0.00 0.00 0.00 3.69
116 1930 6.433093 TGGTTTATTTCTTTAAGCACCTCCTC 59.567 38.462 0.00 0.00 0.00 3.71
117 1931 6.311735 TGGTTTATTTCTTTAAGCACCTCCT 58.688 36.000 0.00 0.00 0.00 3.69
118 1932 6.433093 TCTGGTTTATTTCTTTAAGCACCTCC 59.567 38.462 0.00 0.00 0.00 4.30
119 1933 7.448748 TCTGGTTTATTTCTTTAAGCACCTC 57.551 36.000 0.00 0.00 0.00 3.85
120 1934 8.422577 AATCTGGTTTATTTCTTTAAGCACCT 57.577 30.769 0.00 0.00 0.00 4.00
121 1935 9.489084 AAAATCTGGTTTATTTCTTTAAGCACC 57.511 29.630 0.00 0.00 0.00 5.01
123 1937 9.705290 GGAAAATCTGGTTTATTTCTTTAAGCA 57.295 29.630 0.00 0.00 33.42 3.91
124 1938 9.929180 AGGAAAATCTGGTTTATTTCTTTAAGC 57.071 29.630 0.00 0.00 33.42 3.09
129 1943 9.929180 GCTTAAGGAAAATCTGGTTTATTTCTT 57.071 29.630 4.29 0.00 33.42 2.52
130 1944 9.088987 TGCTTAAGGAAAATCTGGTTTATTTCT 57.911 29.630 4.29 0.00 33.42 2.52
131 1945 9.140286 GTGCTTAAGGAAAATCTGGTTTATTTC 57.860 33.333 4.29 0.00 0.00 2.17
132 1946 8.094548 GGTGCTTAAGGAAAATCTGGTTTATTT 58.905 33.333 4.29 0.00 0.00 1.40
133 1947 7.576856 CGGTGCTTAAGGAAAATCTGGTTTATT 60.577 37.037 4.29 0.00 0.00 1.40
134 1948 6.127730 CGGTGCTTAAGGAAAATCTGGTTTAT 60.128 38.462 4.29 0.00 0.00 1.40
135 1949 5.182380 CGGTGCTTAAGGAAAATCTGGTTTA 59.818 40.000 4.29 0.00 0.00 2.01
136 1950 4.022329 CGGTGCTTAAGGAAAATCTGGTTT 60.022 41.667 4.29 0.00 0.00 3.27
137 1951 3.506067 CGGTGCTTAAGGAAAATCTGGTT 59.494 43.478 4.29 0.00 0.00 3.67
138 1952 3.081804 CGGTGCTTAAGGAAAATCTGGT 58.918 45.455 4.29 0.00 0.00 4.00
139 1953 2.423538 CCGGTGCTTAAGGAAAATCTGG 59.576 50.000 4.29 0.20 0.00 3.86
140 1954 3.081804 ACCGGTGCTTAAGGAAAATCTG 58.918 45.455 6.12 0.00 0.00 2.90
141 1955 3.081804 CACCGGTGCTTAAGGAAAATCT 58.918 45.455 24.02 0.00 0.00 2.40
142 1956 3.487563 CACCGGTGCTTAAGGAAAATC 57.512 47.619 24.02 0.00 0.00 2.17
155 1969 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
156 1970 2.617021 CCCTGTACAAATAAGCACCGGT 60.617 50.000 0.00 0.00 0.00 5.28
157 1971 2.014128 CCCTGTACAAATAAGCACCGG 58.986 52.381 0.00 0.00 0.00 5.28
158 1972 2.676342 GACCCTGTACAAATAAGCACCG 59.324 50.000 0.00 0.00 0.00 4.94
159 1973 2.676342 CGACCCTGTACAAATAAGCACC 59.324 50.000 0.00 0.00 0.00 5.01
160 1974 3.332034 ACGACCCTGTACAAATAAGCAC 58.668 45.455 0.00 0.00 0.00 4.40
161 1975 3.259876 AGACGACCCTGTACAAATAAGCA 59.740 43.478 0.00 0.00 0.00 3.91
162 1976 3.858247 AGACGACCCTGTACAAATAAGC 58.142 45.455 0.00 0.00 0.00 3.09
163 1977 5.326200 AGAGACGACCCTGTACAAATAAG 57.674 43.478 0.00 0.00 0.00 1.73
164 1978 4.159135 GGAGAGACGACCCTGTACAAATAA 59.841 45.833 0.00 0.00 0.00 1.40
165 1979 3.698040 GGAGAGACGACCCTGTACAAATA 59.302 47.826 0.00 0.00 0.00 1.40
166 1980 2.496470 GGAGAGACGACCCTGTACAAAT 59.504 50.000 0.00 0.00 0.00 2.32
167 1981 1.891150 GGAGAGACGACCCTGTACAAA 59.109 52.381 0.00 0.00 0.00 2.83
168 1982 1.075050 AGGAGAGACGACCCTGTACAA 59.925 52.381 0.00 0.00 0.00 2.41
169 1983 0.697079 AGGAGAGACGACCCTGTACA 59.303 55.000 0.00 0.00 0.00 2.90
170 1984 1.096416 CAGGAGAGACGACCCTGTAC 58.904 60.000 0.00 0.00 41.81 2.90
171 1985 3.571748 CAGGAGAGACGACCCTGTA 57.428 57.895 0.00 0.00 41.81 2.74
172 1986 4.425099 CAGGAGAGACGACCCTGT 57.575 61.111 0.00 0.00 41.81 4.00
174 1988 2.599408 TTTACAGGAGAGACGACCCT 57.401 50.000 0.00 0.00 0.00 4.34
175 1989 3.672767 TTTTTACAGGAGAGACGACCC 57.327 47.619 0.00 0.00 0.00 4.46
176 1990 4.804665 GCTATTTTTACAGGAGAGACGACC 59.195 45.833 0.00 0.00 0.00 4.79
177 1991 4.804665 GGCTATTTTTACAGGAGAGACGAC 59.195 45.833 0.00 0.00 0.00 4.34
178 1992 4.464951 TGGCTATTTTTACAGGAGAGACGA 59.535 41.667 0.00 0.00 0.00 4.20
179 1993 4.567159 GTGGCTATTTTTACAGGAGAGACG 59.433 45.833 0.00 0.00 0.00 4.18
180 1994 4.876679 GGTGGCTATTTTTACAGGAGAGAC 59.123 45.833 0.00 0.00 0.00 3.36
181 1995 4.382685 CGGTGGCTATTTTTACAGGAGAGA 60.383 45.833 0.00 0.00 0.00 3.10
182 1996 3.871594 CGGTGGCTATTTTTACAGGAGAG 59.128 47.826 0.00 0.00 0.00 3.20
183 1997 3.370103 CCGGTGGCTATTTTTACAGGAGA 60.370 47.826 0.00 0.00 31.25 3.71
184 1998 2.943033 CCGGTGGCTATTTTTACAGGAG 59.057 50.000 0.00 0.00 31.25 3.69
185 1999 2.306512 ACCGGTGGCTATTTTTACAGGA 59.693 45.455 6.12 0.00 33.46 3.86
186 2000 2.422127 CACCGGTGGCTATTTTTACAGG 59.578 50.000 27.57 0.00 35.04 4.00
187 2001 2.159435 GCACCGGTGGCTATTTTTACAG 60.159 50.000 34.58 5.54 0.00 2.74
188 2002 1.813786 GCACCGGTGGCTATTTTTACA 59.186 47.619 34.58 0.00 0.00 2.41
189 2003 2.089201 AGCACCGGTGGCTATTTTTAC 58.911 47.619 34.58 14.48 40.47 2.01
190 2004 2.500392 AGCACCGGTGGCTATTTTTA 57.500 45.000 34.58 0.00 40.47 1.52
191 2005 1.544246 GAAGCACCGGTGGCTATTTTT 59.456 47.619 34.58 16.43 41.66 1.94
192 2006 1.173913 GAAGCACCGGTGGCTATTTT 58.826 50.000 34.58 16.77 41.66 1.82
193 2007 0.037590 TGAAGCACCGGTGGCTATTT 59.962 50.000 34.58 17.10 41.66 1.40
194 2008 0.392998 CTGAAGCACCGGTGGCTATT 60.393 55.000 34.58 17.77 41.66 1.73
195 2009 1.221840 CTGAAGCACCGGTGGCTAT 59.778 57.895 34.58 20.27 41.66 2.97
196 2010 1.476845 TTCTGAAGCACCGGTGGCTA 61.477 55.000 34.58 16.68 41.66 3.93
197 2011 2.337879 TTTCTGAAGCACCGGTGGCT 62.338 55.000 34.58 27.23 45.15 4.75
198 2012 1.452145 TTTTCTGAAGCACCGGTGGC 61.452 55.000 34.58 25.54 0.00 5.01
199 2013 1.200020 GATTTTCTGAAGCACCGGTGG 59.800 52.381 34.58 18.34 0.00 4.61
200 2014 2.154462 AGATTTTCTGAAGCACCGGTG 58.846 47.619 30.66 30.66 0.00 4.94
201 2015 2.427506 GAGATTTTCTGAAGCACCGGT 58.572 47.619 0.00 0.00 0.00 5.28
202 2016 1.394917 CGAGATTTTCTGAAGCACCGG 59.605 52.381 0.00 0.00 0.00 5.28
203 2017 1.394917 CCGAGATTTTCTGAAGCACCG 59.605 52.381 0.00 0.00 0.00 4.94
204 2018 2.427506 ACCGAGATTTTCTGAAGCACC 58.572 47.619 0.00 0.00 0.00 5.01
205 2019 4.489679 AAACCGAGATTTTCTGAAGCAC 57.510 40.909 0.00 0.00 0.00 4.40
206 2020 6.817765 AATAAACCGAGATTTTCTGAAGCA 57.182 33.333 0.00 0.00 0.00 3.91
207 2021 7.530863 AGAAATAAACCGAGATTTTCTGAAGC 58.469 34.615 0.00 0.00 35.81 3.86
208 2022 8.940952 AGAGAAATAAACCGAGATTTTCTGAAG 58.059 33.333 1.31 0.00 36.91 3.02
209 2023 8.848474 AGAGAAATAAACCGAGATTTTCTGAA 57.152 30.769 1.31 0.00 36.91 3.02
210 2024 9.938280 TTAGAGAAATAAACCGAGATTTTCTGA 57.062 29.630 1.31 0.00 36.91 3.27
212 2026 8.884726 GCTTAGAGAAATAAACCGAGATTTTCT 58.115 33.333 0.00 0.00 38.86 2.52
213 2027 8.665685 TGCTTAGAGAAATAAACCGAGATTTTC 58.334 33.333 0.00 0.00 0.00 2.29
214 2028 8.451748 GTGCTTAGAGAAATAAACCGAGATTTT 58.548 33.333 0.00 0.00 0.00 1.82
215 2029 7.065923 GGTGCTTAGAGAAATAAACCGAGATTT 59.934 37.037 0.00 0.00 0.00 2.17
216 2030 6.539103 GGTGCTTAGAGAAATAAACCGAGATT 59.461 38.462 0.00 0.00 0.00 2.40
217 2031 6.049790 GGTGCTTAGAGAAATAAACCGAGAT 58.950 40.000 0.00 0.00 0.00 2.75
218 2032 5.416947 GGTGCTTAGAGAAATAAACCGAGA 58.583 41.667 0.00 0.00 0.00 4.04
219 2033 4.571176 GGGTGCTTAGAGAAATAAACCGAG 59.429 45.833 0.00 0.00 0.00 4.63
220 2034 4.510571 GGGTGCTTAGAGAAATAAACCGA 58.489 43.478 0.00 0.00 0.00 4.69
221 2035 3.626217 GGGGTGCTTAGAGAAATAAACCG 59.374 47.826 0.00 0.00 0.00 4.44
222 2036 4.856509 AGGGGTGCTTAGAGAAATAAACC 58.143 43.478 0.00 0.00 0.00 3.27
223 2037 5.746284 AGAGGGGTGCTTAGAGAAATAAAC 58.254 41.667 0.00 0.00 0.00 2.01
224 2038 7.504926 TTAGAGGGGTGCTTAGAGAAATAAA 57.495 36.000 0.00 0.00 0.00 1.40
225 2039 6.408206 GCTTAGAGGGGTGCTTAGAGAAATAA 60.408 42.308 0.00 0.00 0.00 1.40
226 2040 5.070580 GCTTAGAGGGGTGCTTAGAGAAATA 59.929 44.000 0.00 0.00 0.00 1.40
227 2041 4.141597 GCTTAGAGGGGTGCTTAGAGAAAT 60.142 45.833 0.00 0.00 0.00 2.17
228 2042 3.197983 GCTTAGAGGGGTGCTTAGAGAAA 59.802 47.826 0.00 0.00 0.00 2.52
229 2043 2.766828 GCTTAGAGGGGTGCTTAGAGAA 59.233 50.000 0.00 0.00 0.00 2.87
230 2044 2.292257 TGCTTAGAGGGGTGCTTAGAGA 60.292 50.000 0.00 0.00 0.00 3.10
231 2045 2.111384 TGCTTAGAGGGGTGCTTAGAG 58.889 52.381 0.00 0.00 0.00 2.43
232 2046 2.247699 TGCTTAGAGGGGTGCTTAGA 57.752 50.000 0.00 0.00 0.00 2.10
233 2047 2.703007 AGATGCTTAGAGGGGTGCTTAG 59.297 50.000 0.00 0.00 0.00 2.18
234 2048 2.700897 GAGATGCTTAGAGGGGTGCTTA 59.299 50.000 0.00 0.00 0.00 3.09
235 2049 1.488393 GAGATGCTTAGAGGGGTGCTT 59.512 52.381 0.00 0.00 0.00 3.91
236 2050 1.127343 GAGATGCTTAGAGGGGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
237 2051 0.107643 GGAGATGCTTAGAGGGGTGC 59.892 60.000 0.00 0.00 0.00 5.01
238 2052 0.761802 GGGAGATGCTTAGAGGGGTG 59.238 60.000 0.00 0.00 0.00 4.61
239 2053 0.343372 TGGGAGATGCTTAGAGGGGT 59.657 55.000 0.00 0.00 0.00 4.95
240 2054 1.739750 ATGGGAGATGCTTAGAGGGG 58.260 55.000 0.00 0.00 0.00 4.79
241 2055 2.441001 ACAATGGGAGATGCTTAGAGGG 59.559 50.000 0.00 0.00 0.00 4.30
242 2056 3.853355 ACAATGGGAGATGCTTAGAGG 57.147 47.619 0.00 0.00 0.00 3.69
243 2057 5.282055 TGTACAATGGGAGATGCTTAGAG 57.718 43.478 0.00 0.00 0.00 2.43
244 2058 5.396772 CCTTGTACAATGGGAGATGCTTAGA 60.397 44.000 9.13 0.00 0.00 2.10
245 2059 4.818546 CCTTGTACAATGGGAGATGCTTAG 59.181 45.833 9.13 0.00 0.00 2.18
246 2060 4.780815 CCTTGTACAATGGGAGATGCTTA 58.219 43.478 9.13 0.00 0.00 3.09
247 2061 3.624777 CCTTGTACAATGGGAGATGCTT 58.375 45.455 9.13 0.00 0.00 3.91
248 2062 2.684927 GCCTTGTACAATGGGAGATGCT 60.685 50.000 16.08 0.00 0.00 3.79
249 2063 1.678101 GCCTTGTACAATGGGAGATGC 59.322 52.381 16.08 3.76 0.00 3.91
250 2064 2.092212 AGGCCTTGTACAATGGGAGATG 60.092 50.000 16.08 0.00 0.00 2.90
251 2065 2.208872 AGGCCTTGTACAATGGGAGAT 58.791 47.619 16.08 0.53 0.00 2.75
252 2066 1.668826 AGGCCTTGTACAATGGGAGA 58.331 50.000 16.08 0.00 0.00 3.71
253 2067 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
254 2068 3.186283 TCTAAGGCCTTGTACAATGGGA 58.814 45.455 28.77 2.40 0.00 4.37
255 2069 3.644966 TCTAAGGCCTTGTACAATGGG 57.355 47.619 28.77 14.91 0.00 4.00
256 2070 4.589908 ACTTCTAAGGCCTTGTACAATGG 58.410 43.478 28.77 13.26 0.00 3.16
257 2071 6.381801 CAAACTTCTAAGGCCTTGTACAATG 58.618 40.000 28.77 14.16 0.00 2.82
258 2072 5.476945 CCAAACTTCTAAGGCCTTGTACAAT 59.523 40.000 28.77 7.50 0.00 2.71
259 2073 4.825085 CCAAACTTCTAAGGCCTTGTACAA 59.175 41.667 28.77 13.18 0.00 2.41
260 2074 4.103469 TCCAAACTTCTAAGGCCTTGTACA 59.897 41.667 28.77 6.91 0.00 2.90
261 2075 4.648651 TCCAAACTTCTAAGGCCTTGTAC 58.351 43.478 28.77 0.00 0.00 2.90
262 2076 4.986054 TCCAAACTTCTAAGGCCTTGTA 57.014 40.909 28.77 12.88 0.00 2.41
263 2077 3.876309 TCCAAACTTCTAAGGCCTTGT 57.124 42.857 28.77 14.38 0.00 3.16
264 2078 5.163612 GCTATTCCAAACTTCTAAGGCCTTG 60.164 44.000 28.77 17.30 0.00 3.61
265 2079 4.950475 GCTATTCCAAACTTCTAAGGCCTT 59.050 41.667 24.18 24.18 0.00 4.35
266 2080 4.527944 GCTATTCCAAACTTCTAAGGCCT 58.472 43.478 0.00 0.00 0.00 5.19
267 2081 3.632604 GGCTATTCCAAACTTCTAAGGCC 59.367 47.826 0.00 0.00 34.01 5.19
268 2082 4.336713 CAGGCTATTCCAAACTTCTAAGGC 59.663 45.833 0.00 0.00 37.29 4.35
269 2083 5.501156 ACAGGCTATTCCAAACTTCTAAGG 58.499 41.667 0.00 0.00 37.29 2.69
270 2084 6.173339 TGACAGGCTATTCCAAACTTCTAAG 58.827 40.000 0.00 0.00 37.29 2.18
286 2100 0.188342 AAAACCCCACATGACAGGCT 59.812 50.000 0.00 0.00 0.00 4.58
341 2429 0.625849 AATGGCAAGGACCCAGGTAG 59.374 55.000 0.00 0.00 35.48 3.18
342 2430 1.080638 AAATGGCAAGGACCCAGGTA 58.919 50.000 0.00 0.00 35.48 3.08
343 2431 0.190815 AAAATGGCAAGGACCCAGGT 59.809 50.000 0.00 0.00 35.48 4.00
344 2432 0.609662 CAAAATGGCAAGGACCCAGG 59.390 55.000 0.00 0.00 35.48 4.45
345 2433 1.341080 ACAAAATGGCAAGGACCCAG 58.659 50.000 0.00 0.00 35.48 4.45
346 2434 1.415659 CAACAAAATGGCAAGGACCCA 59.584 47.619 0.00 0.00 36.66 4.51
347 2435 1.416030 ACAACAAAATGGCAAGGACCC 59.584 47.619 0.00 0.00 0.00 4.46
348 2436 2.871633 CAACAACAAAATGGCAAGGACC 59.128 45.455 0.00 0.00 0.00 4.46
349 2437 3.530535 ACAACAACAAAATGGCAAGGAC 58.469 40.909 0.00 0.00 0.00 3.85
350 2438 3.450457 AGACAACAACAAAATGGCAAGGA 59.550 39.130 0.00 0.00 0.00 3.36
351 2439 3.795877 AGACAACAACAAAATGGCAAGG 58.204 40.909 0.00 0.00 0.00 3.61
352 2440 4.630940 ACAAGACAACAACAAAATGGCAAG 59.369 37.500 0.00 0.00 0.00 4.01
355 2443 4.727448 GCAACAAGACAACAACAAAATGGC 60.727 41.667 0.00 0.00 0.00 4.40
358 2446 5.642919 ACATGCAACAAGACAACAACAAAAT 59.357 32.000 0.00 0.00 0.00 1.82
404 2496 5.099042 TCCCTTCTAACTTCATACCAAGC 57.901 43.478 0.00 0.00 0.00 4.01
407 2499 7.265599 TCAAATCCCTTCTAACTTCATACCA 57.734 36.000 0.00 0.00 0.00 3.25
408 2500 7.829706 AGTTCAAATCCCTTCTAACTTCATACC 59.170 37.037 0.00 0.00 0.00 2.73
457 2549 2.695147 CCAAGTTTCCAACCTTCAAGCT 59.305 45.455 0.00 0.00 0.00 3.74
458 2550 2.693074 TCCAAGTTTCCAACCTTCAAGC 59.307 45.455 0.00 0.00 0.00 4.01
497 2638 7.861872 GCTAACCATGAAAATTTTGTTGCAAAT 59.138 29.630 8.47 0.00 0.00 2.32
506 2647 6.210185 AGAGAGCAGCTAACCATGAAAATTTT 59.790 34.615 2.28 2.28 0.00 1.82
508 2649 5.125097 CAGAGAGCAGCTAACCATGAAAATT 59.875 40.000 0.00 0.00 0.00 1.82
509 2650 4.639310 CAGAGAGCAGCTAACCATGAAAAT 59.361 41.667 0.00 0.00 0.00 1.82
511 2652 3.603532 CAGAGAGCAGCTAACCATGAAA 58.396 45.455 0.00 0.00 0.00 2.69
516 2662 1.216444 CGCAGAGAGCAGCTAACCA 59.784 57.895 0.00 0.00 46.13 3.67
530 2676 1.076533 ATGAAACGACCTACGCGCAG 61.077 55.000 5.73 1.19 46.94 5.18
540 2713 4.298332 AGGTGATTGCAAAATGAAACGAC 58.702 39.130 1.71 0.00 0.00 4.34
550 2723 3.691118 GCATAGACAGAGGTGATTGCAAA 59.309 43.478 1.71 0.00 0.00 3.68
551 2724 3.273434 GCATAGACAGAGGTGATTGCAA 58.727 45.455 0.00 0.00 0.00 4.08
552 2725 2.739609 CGCATAGACAGAGGTGATTGCA 60.740 50.000 0.00 0.00 0.00 4.08
566 2740 1.868109 GCTGTTACGATGGCGCATAGA 60.868 52.381 10.83 0.00 42.48 1.98
575 2751 2.143122 AGGTGTTGTGCTGTTACGATG 58.857 47.619 0.00 0.00 0.00 3.84
580 2756 2.894763 ACGTAGGTGTTGTGCTGTTA 57.105 45.000 0.00 0.00 0.00 2.41
584 2760 4.056050 CTCTTTAACGTAGGTGTTGTGCT 58.944 43.478 0.00 0.00 33.32 4.40
586 2762 4.446719 GTCCTCTTTAACGTAGGTGTTGTG 59.553 45.833 1.37 0.00 33.32 3.33
588 2764 4.879598 AGTCCTCTTTAACGTAGGTGTTG 58.120 43.478 1.37 0.00 33.32 3.33
589 2765 5.069516 TCAAGTCCTCTTTAACGTAGGTGTT 59.930 40.000 1.37 0.00 35.86 3.32
590 2766 4.586001 TCAAGTCCTCTTTAACGTAGGTGT 59.414 41.667 1.37 0.00 0.00 4.16
591 2767 5.130292 TCAAGTCCTCTTTAACGTAGGTG 57.870 43.478 1.37 0.00 0.00 4.00
592 2768 5.997384 ATCAAGTCCTCTTTAACGTAGGT 57.003 39.130 1.37 0.00 0.00 3.08
593 2769 7.603024 AGAAAATCAAGTCCTCTTTAACGTAGG 59.397 37.037 0.00 0.00 0.00 3.18
594 2770 8.535690 AGAAAATCAAGTCCTCTTTAACGTAG 57.464 34.615 0.00 0.00 0.00 3.51
595 2771 8.897872 AAGAAAATCAAGTCCTCTTTAACGTA 57.102 30.769 0.00 0.00 0.00 3.57
601 2777 8.414003 GTGGTTAAAGAAAATCAAGTCCTCTTT 58.586 33.333 0.00 0.00 39.18 2.52
602 2778 7.559897 TGTGGTTAAAGAAAATCAAGTCCTCTT 59.440 33.333 0.00 0.00 0.00 2.85
605 2781 7.505585 TGATGTGGTTAAAGAAAATCAAGTCCT 59.494 33.333 0.00 0.00 0.00 3.85
606 2782 7.657336 TGATGTGGTTAAAGAAAATCAAGTCC 58.343 34.615 0.00 0.00 0.00 3.85
628 4947 7.501559 CAGTCCAAATGAAGGAACTGATATGAT 59.498 37.037 0.00 0.00 40.86 2.45
644 4963 4.081420 AGAGTACAGGCTACAGTCCAAATG 60.081 45.833 0.00 0.00 0.00 2.32
645 4964 4.097418 AGAGTACAGGCTACAGTCCAAAT 58.903 43.478 0.00 0.00 0.00 2.32
647 4966 3.090037 GAGAGTACAGGCTACAGTCCAA 58.910 50.000 0.00 0.00 0.00 3.53
648 4967 2.309162 AGAGAGTACAGGCTACAGTCCA 59.691 50.000 0.00 0.00 0.00 4.02
649 4968 2.685897 CAGAGAGTACAGGCTACAGTCC 59.314 54.545 0.00 0.00 0.00 3.85
689 5008 6.455360 TTGCACAGAAAGAGAAAATCAAGT 57.545 33.333 0.00 0.00 0.00 3.16
707 5061 2.096980 GGTAAAAGCGTAGGGATTGCAC 59.903 50.000 0.00 0.00 0.00 4.57
742 5266 5.551760 TTCTTTTCTGAATCGAGGATTGC 57.448 39.130 0.00 0.00 31.89 3.56
752 5309 8.986929 TCCTCTTTCTCTTTTCTTTTCTGAAT 57.013 30.769 0.00 0.00 0.00 2.57
773 5332 3.990959 ACCTTTCTGAACCATCTCCTC 57.009 47.619 0.00 0.00 0.00 3.71
863 5422 1.229723 GGAGGGGTCAGGGTGGTAA 60.230 63.158 0.00 0.00 0.00 2.85
917 5480 2.107953 GAGAGGCAGATGGCGGTC 59.892 66.667 0.26 0.00 46.16 4.79
921 5484 2.203181 GCTGGAGAGGCAGATGGC 60.203 66.667 0.00 0.00 43.74 4.40
984 5547 2.644676 GCCATCTTTCCTCCTAACCAC 58.355 52.381 0.00 0.00 0.00 4.16
1026 5612 1.427819 GAACGGTAAAGCGGCATGG 59.572 57.895 1.45 0.00 0.00 3.66
1041 5627 2.498167 AGCCCAGCATATGAATCGAAC 58.502 47.619 6.97 0.00 0.00 3.95
1165 5837 8.081025 AGCAAAGAAACAAGAAGATCAAATCTC 58.919 33.333 0.00 0.00 39.08 2.75
1273 5951 3.682292 CTCACCCTGGCTAACCCGC 62.682 68.421 0.00 0.00 35.87 6.13
1303 8059 1.917872 AGAAGGAGCAAGAGACGAGT 58.082 50.000 0.00 0.00 0.00 4.18
1334 8096 4.382470 GCAAAGACTGGCTTAGAGAGATGA 60.382 45.833 0.00 0.00 35.24 2.92
1344 8106 1.696063 ACACATGCAAAGACTGGCTT 58.304 45.000 0.00 0.00 38.88 4.35
1347 8109 4.685924 AGAAAAACACATGCAAAGACTGG 58.314 39.130 0.00 0.00 0.00 4.00
1769 8540 2.512515 GTCATGGCGAGGCTCACC 60.513 66.667 14.70 14.70 0.00 4.02
1839 8615 8.746530 ACAAGAATGCTCAAATTGTATGAGAAT 58.253 29.630 9.37 2.09 43.63 2.40
1850 8642 6.480981 CCTCAAACAAACAAGAATGCTCAAAT 59.519 34.615 0.00 0.00 0.00 2.32
1855 8647 3.960102 TCCCTCAAACAAACAAGAATGCT 59.040 39.130 0.00 0.00 0.00 3.79
1861 8653 2.695147 AGCCTTCCCTCAAACAAACAAG 59.305 45.455 0.00 0.00 0.00 3.16
1888 8682 6.140110 GCAAAACAGACGATAAACAGCTTAA 58.860 36.000 0.00 0.00 0.00 1.85
1947 8767 2.287373 CCAAGATGCTCGCTCAATCTTC 59.713 50.000 0.00 0.00 30.03 2.87
1949 8769 1.209019 ACCAAGATGCTCGCTCAATCT 59.791 47.619 0.00 0.00 0.00 2.40
1977 8797 1.722011 AATCCAAACGGTCGCTACAG 58.278 50.000 0.00 0.00 0.00 2.74
1981 8801 1.579429 GCAAATCCAAACGGTCGCT 59.421 52.632 0.00 0.00 0.00 4.93
2003 8837 5.915175 AGTAAGTAGGTAAACTGCCATAGC 58.085 41.667 0.00 0.00 40.48 2.97
2029 8863 8.418597 TCCAACACTAGACAGAAAATACTAGT 57.581 34.615 0.00 0.00 43.85 2.57
2033 8870 7.387948 ACACATCCAACACTAGACAGAAAATAC 59.612 37.037 0.00 0.00 0.00 1.89
2093 8954 1.003118 TGTCCCCCGAATGAAGTCAAG 59.997 52.381 0.00 0.00 0.00 3.02
2105 8966 2.930950 ACACATTAATCATGTCCCCCG 58.069 47.619 0.00 0.00 43.17 5.73
2114 8975 5.538118 ACTGACAGACGAACACATTAATCA 58.462 37.500 10.08 0.00 0.00 2.57
2216 9086 2.221517 GCATGAAACGCAAACAAGCAAT 59.778 40.909 0.00 0.00 0.00 3.56
2232 9102 2.371306 CATCAACATGTCAGGGCATGA 58.629 47.619 19.76 0.00 46.65 3.07
2269 9139 2.495270 CTGCTAGGCGATAGTGATCCAT 59.505 50.000 0.00 0.00 39.35 3.41
2289 9159 2.043526 AGAACCAAGGATTCATTGCCCT 59.956 45.455 5.55 0.09 0.00 5.19
2325 9196 2.100087 GAGGACCGAACAGAGAAGATCC 59.900 54.545 0.00 0.00 0.00 3.36
2343 10454 1.938577 CCGATTGCAATCACAGAGAGG 59.061 52.381 32.72 21.86 35.11 3.69
2355 10467 2.401583 ACATAGCAGAACCGATTGCA 57.598 45.000 0.00 0.00 42.67 4.08
2412 10526 5.508200 TTTTTAACCACGCATCAAGAACT 57.492 34.783 0.00 0.00 0.00 3.01
2467 10582 2.366916 ACAGAGACTGACCCTGAAACAG 59.633 50.000 5.76 0.00 35.18 3.16
2519 10635 9.991906 CATGATAAAATAGATGGCTCCAAATTT 57.008 29.630 0.00 0.00 0.00 1.82
2520 10636 8.092687 GCATGATAAAATAGATGGCTCCAAATT 58.907 33.333 0.00 0.00 0.00 1.82
2521 10637 7.453752 AGCATGATAAAATAGATGGCTCCAAAT 59.546 33.333 0.00 0.00 0.00 2.32
2522 10638 6.779049 AGCATGATAAAATAGATGGCTCCAAA 59.221 34.615 0.00 0.00 0.00 3.28
2524 10640 5.884322 AGCATGATAAAATAGATGGCTCCA 58.116 37.500 0.00 0.00 0.00 3.86
2525 10641 7.928307 TTAGCATGATAAAATAGATGGCTCC 57.072 36.000 0.00 0.00 0.00 4.70
2526 10642 9.617975 GTTTTAGCATGATAAAATAGATGGCTC 57.382 33.333 26.47 10.76 37.08 4.70
2527 10643 9.135189 TGTTTTAGCATGATAAAATAGATGGCT 57.865 29.630 26.47 1.26 37.08 4.75
2558 11484 5.507315 CCCACACTGAATGGTTTTGTAACTC 60.507 44.000 0.00 0.00 35.23 3.01
2673 12161 5.824624 ACTTTGCTGCAGCTACAATATACAT 59.175 36.000 36.61 9.14 42.66 2.29
2685 12174 2.749621 ACATTACCTACTTTGCTGCAGC 59.250 45.455 31.89 31.89 42.50 5.25
2686 12175 4.002982 TGACATTACCTACTTTGCTGCAG 58.997 43.478 10.11 10.11 0.00 4.41
2687 12176 4.014569 TGACATTACCTACTTTGCTGCA 57.985 40.909 0.00 0.00 0.00 4.41
2700 12189 9.836864 TGCATATATATCCTTCCATGACATTAC 57.163 33.333 0.00 0.00 0.00 1.89
2709 12198 9.399797 GATTCATGTTGCATATATATCCTTCCA 57.600 33.333 0.00 0.00 0.00 3.53
2736 12225 4.462483 GCAAGGATTAAATGACCTGAACCA 59.538 41.667 0.00 0.00 34.03 3.67
2868 12700 6.933521 CCATCAAGTGTATAAGCTAGCAGATT 59.066 38.462 18.83 5.14 0.00 2.40
2870 12702 5.363868 ACCATCAAGTGTATAAGCTAGCAGA 59.636 40.000 18.83 4.00 0.00 4.26
2892 12724 5.982516 TGCTTGTGTATTTGTTCAATCAACC 59.017 36.000 0.00 0.00 33.51 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.