Multiple sequence alignment - TraesCS2D01G192200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G192200 chr2D 100.000 3085 0 0 1 3085 136465208 136468292 0.000000e+00 5698.0
1 TraesCS2D01G192200 chr2D 93.023 43 2 1 575 617 388426886 388426927 9.240000e-06 62.1
2 TraesCS2D01G192200 chr2A 89.305 2029 124 45 651 2610 165242123 165240119 0.000000e+00 2459.0
3 TraesCS2D01G192200 chr2B 90.264 1212 70 22 1148 2342 194857770 194858950 0.000000e+00 1541.0
4 TraesCS2D01G192200 chr2B 89.228 492 29 16 644 1123 194857056 194857535 7.370000e-166 593.0
5 TraesCS2D01G192200 chr2B 80.822 511 78 9 2327 2828 194859076 194859575 1.740000e-102 383.0
6 TraesCS2D01G192200 chr2B 97.321 112 3 0 673 784 194854809 194854920 1.130000e-44 191.0
7 TraesCS2D01G192200 chr2B 86.517 89 9 3 3000 3085 113275145 113275233 9.110000e-16 95.3
8 TraesCS2D01G192200 chr4A 87.884 553 45 11 1424 1972 724018006 724017472 5.610000e-177 630.0
9 TraesCS2D01G192200 chr1B 86.581 544 69 3 15 556 617809732 617809191 5.690000e-167 597.0
10 TraesCS2D01G192200 chr1B 92.105 76 5 1 3011 3085 499898204 499898279 4.210000e-19 106.0
11 TraesCS2D01G192200 chr1B 92.857 42 2 1 568 609 327741454 327741494 3.320000e-05 60.2
12 TraesCS2D01G192200 chr5B 90.220 409 31 5 1423 1831 455764052 455763653 2.730000e-145 525.0
13 TraesCS2D01G192200 chr5B 82.740 562 89 7 1 556 6595097 6595656 7.680000e-136 494.0
14 TraesCS2D01G192200 chr5B 90.332 331 26 3 1645 1972 476909090 476909417 2.200000e-116 429.0
15 TraesCS2D01G192200 chr5B 80.841 428 80 2 130 556 640156604 640156178 4.930000e-88 335.0
16 TraesCS2D01G192200 chr5B 86.239 109 6 3 1873 1972 455763656 455763548 3.250000e-20 110.0
17 TraesCS2D01G192200 chr5B 90.789 76 6 1 3011 3085 387753303 387753228 1.960000e-17 100.0
18 TraesCS2D01G192200 chr5B 86.170 94 10 3 2993 3085 454655479 454655388 7.040000e-17 99.0
19 TraesCS2D01G192200 chr7A 88.729 417 31 6 1423 1838 735088805 735089206 2.140000e-136 496.0
20 TraesCS2D01G192200 chr7A 81.206 431 79 2 127 556 74731675 74732104 2.280000e-91 346.0
21 TraesCS2D01G192200 chr7A 87.943 141 11 2 1833 1970 735108392 735108529 8.850000e-36 161.0
22 TraesCS2D01G192200 chr1D 82.790 552 89 5 7 555 259431933 259432481 3.580000e-134 488.0
23 TraesCS2D01G192200 chr3D 80.645 558 104 4 1 556 524679170 524679725 2.200000e-116 429.0
24 TraesCS2D01G192200 chr3D 87.952 83 8 2 3005 3085 66262968 66262886 2.530000e-16 97.1
25 TraesCS2D01G192200 chr3D 86.517 89 10 2 2998 3085 489175792 489175879 2.530000e-16 97.1
26 TraesCS2D01G192200 chr5D 80.249 562 99 12 1 556 343379887 343380442 2.210000e-111 412.0
27 TraesCS2D01G192200 chr3B 78.995 557 114 3 1 556 116974395 116974949 8.080000e-101 377.0
28 TraesCS2D01G192200 chr3B 78.769 471 96 4 88 556 722592291 722591823 2.310000e-81 313.0
29 TraesCS2D01G192200 chr3B 88.372 86 7 3 3003 3085 52922052 52921967 1.960000e-17 100.0
30 TraesCS2D01G192200 chr3B 97.297 37 0 1 568 604 792739590 792739555 9.240000e-06 62.1
31 TraesCS2D01G192200 chr7B 87.952 83 9 1 3004 3085 271297963 271298045 2.530000e-16 97.1
32 TraesCS2D01G192200 chr7B 93.023 43 2 1 568 610 190260285 190260326 9.240000e-06 62.1
33 TraesCS2D01G192200 chr6B 86.364 88 10 2 2999 3085 642731007 642731093 9.110000e-16 95.3
34 TraesCS2D01G192200 chr6B 95.122 41 1 1 568 608 106838182 106838143 2.570000e-06 63.9
35 TraesCS2D01G192200 chr6B 97.368 38 0 1 568 605 699408268 699408304 2.570000e-06 63.9
36 TraesCS2D01G192200 chr6A 97.368 38 0 1 568 605 256839250 256839286 2.570000e-06 63.9
37 TraesCS2D01G192200 chr6A 94.872 39 1 1 568 606 543498365 543498328 3.320000e-05 60.2
38 TraesCS2D01G192200 chr4D 95.000 40 1 1 568 607 351519336 351519298 9.240000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G192200 chr2D 136465208 136468292 3084 False 5698.0 5698 100.00000 1 3085 1 chr2D.!!$F1 3084
1 TraesCS2D01G192200 chr2A 165240119 165242123 2004 True 2459.0 2459 89.30500 651 2610 1 chr2A.!!$R1 1959
2 TraesCS2D01G192200 chr2B 194854809 194859575 4766 False 677.0 1541 89.40875 644 2828 4 chr2B.!!$F2 2184
3 TraesCS2D01G192200 chr4A 724017472 724018006 534 True 630.0 630 87.88400 1424 1972 1 chr4A.!!$R1 548
4 TraesCS2D01G192200 chr1B 617809191 617809732 541 True 597.0 597 86.58100 15 556 1 chr1B.!!$R1 541
5 TraesCS2D01G192200 chr5B 6595097 6595656 559 False 494.0 494 82.74000 1 556 1 chr5B.!!$F1 555
6 TraesCS2D01G192200 chr5B 455763548 455764052 504 True 317.5 525 88.22950 1423 1972 2 chr5B.!!$R4 549
7 TraesCS2D01G192200 chr1D 259431933 259432481 548 False 488.0 488 82.79000 7 555 1 chr1D.!!$F1 548
8 TraesCS2D01G192200 chr3D 524679170 524679725 555 False 429.0 429 80.64500 1 556 1 chr3D.!!$F2 555
9 TraesCS2D01G192200 chr5D 343379887 343380442 555 False 412.0 412 80.24900 1 556 1 chr5D.!!$F1 555
10 TraesCS2D01G192200 chr3B 116974395 116974949 554 False 377.0 377 78.99500 1 556 1 chr3B.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.180171 TCGATGGATTTCACCGCCAT 59.820 50.0 0.0 0.0 44.7 4.40 F
548 553 0.393077 ACACTCCTCACGACCCAAAG 59.607 55.0 0.0 0.0 0.0 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1225 3068 0.321653 ACAACCGGATCTTGAGGCAC 60.322 55.0 9.46 0.0 0.0 5.01 R
2525 4574 0.311790 GCTCTCTGATGCTCTCTCCG 59.688 60.0 0.00 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.185246 ACAACAGATCTCCATTAGCGG 57.815 47.619 0.00 0.00 0.00 5.52
68 69 3.181465 CCATTAGCGGACCTAGTTCACAT 60.181 47.826 0.00 0.00 0.00 3.21
110 111 1.660607 CAGTGTCGATGGATTTCACCG 59.339 52.381 0.00 0.00 0.00 4.94
114 115 0.180171 TCGATGGATTTCACCGCCAT 59.820 50.000 0.00 0.00 44.70 4.40
164 169 2.618053 GCACTAGCAAGGAACATACGT 58.382 47.619 0.00 0.00 41.58 3.57
166 171 2.348666 CACTAGCAAGGAACATACGTGC 59.651 50.000 0.00 0.00 42.41 5.34
200 205 4.553547 GCTGCCATATGTCGAGATTCAAAC 60.554 45.833 0.00 0.00 0.00 2.93
203 208 3.494626 CCATATGTCGAGATTCAAACGGG 59.505 47.826 0.00 0.00 0.00 5.28
270 275 5.579047 ACCCAATGATCCTGAAAACATACA 58.421 37.500 0.00 0.00 0.00 2.29
324 329 4.100035 ACCTGAACGAGCATGATATTCTGA 59.900 41.667 12.92 0.00 0.00 3.27
529 534 3.737559 AGGTAGGCATGTTTGATTGGA 57.262 42.857 0.00 0.00 0.00 3.53
548 553 0.393077 ACACTCCTCACGACCCAAAG 59.607 55.000 0.00 0.00 0.00 2.77
556 561 1.744014 ACGACCCAAAGCGTGTACT 59.256 52.632 0.00 0.00 39.56 2.73
558 563 0.788391 CGACCCAAAGCGTGTACTTC 59.212 55.000 0.00 0.00 0.00 3.01
559 564 1.154197 GACCCAAAGCGTGTACTTCC 58.846 55.000 0.00 0.00 0.00 3.46
560 565 0.763035 ACCCAAAGCGTGTACTTCCT 59.237 50.000 0.00 0.00 0.00 3.36
561 566 1.270678 ACCCAAAGCGTGTACTTCCTC 60.271 52.381 0.00 0.00 0.00 3.71
563 568 1.270625 CCAAAGCGTGTACTTCCTCCA 60.271 52.381 0.00 0.00 0.00 3.86
564 569 2.615493 CCAAAGCGTGTACTTCCTCCAT 60.615 50.000 0.00 0.00 0.00 3.41
565 570 3.074412 CAAAGCGTGTACTTCCTCCATT 58.926 45.455 0.00 0.00 0.00 3.16
568 573 1.066430 GCGTGTACTTCCTCCATTCCA 60.066 52.381 0.00 0.00 0.00 3.53
569 574 2.614481 GCGTGTACTTCCTCCATTCCAA 60.614 50.000 0.00 0.00 0.00 3.53
570 575 3.670625 CGTGTACTTCCTCCATTCCAAA 58.329 45.455 0.00 0.00 0.00 3.28
571 576 4.069304 CGTGTACTTCCTCCATTCCAAAA 58.931 43.478 0.00 0.00 0.00 2.44
573 578 5.878116 CGTGTACTTCCTCCATTCCAAAATA 59.122 40.000 0.00 0.00 0.00 1.40
574 579 6.542370 CGTGTACTTCCTCCATTCCAAAATAT 59.458 38.462 0.00 0.00 0.00 1.28
575 580 7.467267 CGTGTACTTCCTCCATTCCAAAATATG 60.467 40.741 0.00 0.00 0.00 1.78
593 598 9.533253 CAAAATATGGGTCATCTATTTTGGAAC 57.467 33.333 14.66 0.00 41.06 3.62
594 599 7.510549 AATATGGGTCATCTATTTTGGAACG 57.489 36.000 0.00 0.00 0.00 3.95
596 601 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
597 602 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
598 603 4.383770 GGGTCATCTATTTTGGAACGGAGA 60.384 45.833 0.00 0.00 0.00 3.71
600 605 5.395324 GGTCATCTATTTTGGAACGGAGAGA 60.395 44.000 0.00 0.00 0.00 3.10
601 606 5.751028 GTCATCTATTTTGGAACGGAGAGAG 59.249 44.000 0.00 0.00 0.00 3.20
602 607 5.422331 TCATCTATTTTGGAACGGAGAGAGT 59.578 40.000 0.00 0.00 0.00 3.24
603 608 6.605995 TCATCTATTTTGGAACGGAGAGAGTA 59.394 38.462 0.00 0.00 0.00 2.59
604 609 6.205101 TCTATTTTGGAACGGAGAGAGTAC 57.795 41.667 0.00 0.00 0.00 2.73
606 611 2.599408 TTGGAACGGAGAGAGTACCT 57.401 50.000 0.00 0.00 0.00 3.08
607 612 3.726557 TTGGAACGGAGAGAGTACCTA 57.273 47.619 0.00 0.00 0.00 3.08
608 613 3.947612 TGGAACGGAGAGAGTACCTAT 57.052 47.619 0.00 0.00 0.00 2.57
609 614 3.818180 TGGAACGGAGAGAGTACCTATC 58.182 50.000 0.00 0.00 32.48 2.08
610 615 3.201487 TGGAACGGAGAGAGTACCTATCA 59.799 47.826 7.85 0.00 34.88 2.15
611 616 4.205587 GGAACGGAGAGAGTACCTATCAA 58.794 47.826 7.85 0.00 34.88 2.57
612 617 4.643784 GGAACGGAGAGAGTACCTATCAAA 59.356 45.833 7.85 0.00 34.88 2.69
613 618 5.126707 GGAACGGAGAGAGTACCTATCAAAA 59.873 44.000 7.85 0.00 34.88 2.44
614 619 6.183360 GGAACGGAGAGAGTACCTATCAAAAT 60.183 42.308 7.85 0.00 34.88 1.82
615 620 6.793505 ACGGAGAGAGTACCTATCAAAATT 57.206 37.500 7.85 0.00 34.88 1.82
616 621 6.574350 ACGGAGAGAGTACCTATCAAAATTG 58.426 40.000 7.85 0.00 34.88 2.32
618 623 6.697892 CGGAGAGAGTACCTATCAAAATTGTC 59.302 42.308 7.85 0.00 34.88 3.18
619 624 7.416890 CGGAGAGAGTACCTATCAAAATTGTCT 60.417 40.741 7.85 0.00 34.88 3.41
620 625 8.261522 GGAGAGAGTACCTATCAAAATTGTCTT 58.738 37.037 7.85 0.00 34.88 3.01
621 626 9.092876 GAGAGAGTACCTATCAAAATTGTCTTG 57.907 37.037 0.00 0.00 33.45 3.02
622 627 8.816894 AGAGAGTACCTATCAAAATTGTCTTGA 58.183 33.333 0.00 0.00 37.22 3.02
624 629 9.965902 AGAGTACCTATCAAAATTGTCTTGAAT 57.034 29.630 0.00 0.00 36.43 2.57
626 631 9.739276 AGTACCTATCAAAATTGTCTTGAATCA 57.261 29.630 0.00 0.00 36.43 2.57
636 641 8.679288 AAATTGTCTTGAATCAATAAAGCGAG 57.321 30.769 0.00 0.00 34.45 5.03
637 642 5.221891 TGTCTTGAATCAATAAAGCGAGC 57.778 39.130 0.00 0.00 0.00 5.03
642 647 4.371786 TGAATCAATAAAGCGAGCGAGAT 58.628 39.130 0.00 0.00 0.00 2.75
645 650 6.478673 TGAATCAATAAAGCGAGCGAGATAAA 59.521 34.615 0.00 0.00 0.00 1.40
646 651 6.844696 ATCAATAAAGCGAGCGAGATAAAA 57.155 33.333 0.00 0.00 0.00 1.52
647 652 6.656314 TCAATAAAGCGAGCGAGATAAAAA 57.344 33.333 0.00 0.00 0.00 1.94
751 2362 1.271379 ACCAAATCAGACCGTTGGAGG 60.271 52.381 13.87 0.00 43.82 4.30
775 2386 4.135153 CCCTGCGTCCACCTCTCG 62.135 72.222 0.00 0.00 0.00 4.04
819 2430 1.686428 CCACCCGAGGAGAGAGAATCA 60.686 57.143 0.00 0.00 37.82 2.57
885 2517 1.997669 ATCTTGCTTTCTCGACGGTC 58.002 50.000 0.00 0.00 0.00 4.79
913 2545 1.305201 GCGTCCTCTCGATCTTCTCT 58.695 55.000 0.00 0.00 0.00 3.10
914 2546 1.002900 GCGTCCTCTCGATCTTCTCTG 60.003 57.143 0.00 0.00 0.00 3.35
916 2548 2.031560 CGTCCTCTCGATCTTCTCTGTG 59.968 54.545 0.00 0.00 0.00 3.66
917 2549 2.357637 GTCCTCTCGATCTTCTCTGTGG 59.642 54.545 0.00 0.00 0.00 4.17
918 2550 2.025793 TCCTCTCGATCTTCTCTGTGGT 60.026 50.000 0.00 0.00 0.00 4.16
919 2551 2.757868 CCTCTCGATCTTCTCTGTGGTT 59.242 50.000 0.00 0.00 0.00 3.67
920 2552 3.181491 CCTCTCGATCTTCTCTGTGGTTC 60.181 52.174 0.00 0.00 0.00 3.62
921 2553 3.421844 TCTCGATCTTCTCTGTGGTTCA 58.578 45.455 0.00 0.00 0.00 3.18
922 2554 4.019858 TCTCGATCTTCTCTGTGGTTCAT 58.980 43.478 0.00 0.00 0.00 2.57
923 2555 4.464244 TCTCGATCTTCTCTGTGGTTCATT 59.536 41.667 0.00 0.00 0.00 2.57
924 2556 5.047021 TCTCGATCTTCTCTGTGGTTCATTT 60.047 40.000 0.00 0.00 0.00 2.32
925 2557 5.551233 TCGATCTTCTCTGTGGTTCATTTT 58.449 37.500 0.00 0.00 0.00 1.82
926 2558 5.409520 TCGATCTTCTCTGTGGTTCATTTTG 59.590 40.000 0.00 0.00 0.00 2.44
927 2559 5.391310 CGATCTTCTCTGTGGTTCATTTTGG 60.391 44.000 0.00 0.00 0.00 3.28
928 2560 4.792068 TCTTCTCTGTGGTTCATTTTGGT 58.208 39.130 0.00 0.00 0.00 3.67
929 2561 5.200483 TCTTCTCTGTGGTTCATTTTGGTT 58.800 37.500 0.00 0.00 0.00 3.67
930 2562 5.299279 TCTTCTCTGTGGTTCATTTTGGTTC 59.701 40.000 0.00 0.00 0.00 3.62
931 2563 4.792068 TCTCTGTGGTTCATTTTGGTTCT 58.208 39.130 0.00 0.00 0.00 3.01
932 2564 4.821805 TCTCTGTGGTTCATTTTGGTTCTC 59.178 41.667 0.00 0.00 0.00 2.87
940 2572 4.811555 TCATTTTGGTTCTCACAACTCG 57.188 40.909 0.00 0.00 0.00 4.18
946 2578 2.693591 TGGTTCTCACAACTCGTCTTCT 59.306 45.455 0.00 0.00 0.00 2.85
979 2612 2.183555 GATCCGCCGTTCCTTCGT 59.816 61.111 0.00 0.00 0.00 3.85
1150 2992 1.877165 GATCCCCGCGTCGAGTTTC 60.877 63.158 4.92 0.00 0.00 2.78
1186 3029 6.055588 TCCGTTTCTCTTGATCTTTCTTTGT 58.944 36.000 0.00 0.00 0.00 2.83
1187 3030 6.202954 TCCGTTTCTCTTGATCTTTCTTTGTC 59.797 38.462 0.00 0.00 0.00 3.18
1197 3040 3.728845 TCTTTCTTTGTCGGAGTTCCTG 58.271 45.455 0.00 0.00 0.00 3.86
1225 3068 1.126113 CGTTTCGATCCTGTTGTTCGG 59.874 52.381 0.00 0.00 36.92 4.30
1239 3082 1.084370 GTTCGGTGCCTCAAGATCCG 61.084 60.000 0.00 0.00 42.12 4.18
1294 3137 3.960102 TCAGCAACCAGATTGTTTCCTTT 59.040 39.130 0.00 0.00 40.77 3.11
1351 3197 6.473397 AACGATTTCTGTTTCTCTGATGAC 57.527 37.500 0.00 0.00 0.00 3.06
1356 3202 7.857389 CGATTTCTGTTTCTCTGATGACAAAAA 59.143 33.333 0.00 0.00 0.00 1.94
1377 3226 4.900635 ACACGATTCAGTTCTGCTTTTT 57.099 36.364 0.00 0.00 0.00 1.94
1400 3249 8.524870 TTTTGTACTACAACCGTAGAATCTTC 57.475 34.615 6.63 0.00 46.98 2.87
1438 3301 3.513912 ACAGATTTGTACTGATCCGTCCA 59.486 43.478 0.00 0.00 38.55 4.02
1670 3534 3.948086 GAGCACGGACGACTGGACG 62.948 68.421 0.00 0.00 39.31 4.79
1715 3579 3.393970 TTCGAGAGGGGCAGGCTG 61.394 66.667 10.94 10.94 0.00 4.85
2161 4049 4.085733 TGGATGGTTGGGTGTTGATAAAG 58.914 43.478 0.00 0.00 0.00 1.85
2219 4107 1.237285 GGGGGCAATATAGCTGCGTG 61.237 60.000 0.00 0.00 40.88 5.34
2261 4149 6.819397 AATCTGATCCGTTGATATCTCGTA 57.181 37.500 15.50 4.96 0.00 3.43
2342 4371 0.249826 AACAACGCAGGCAAATTGGG 60.250 50.000 0.00 0.00 34.93 4.12
2369 4406 1.947456 GTTCAGTTTGTGAGGTGGTCC 59.053 52.381 0.00 0.00 36.21 4.46
2370 4407 0.105964 TCAGTTTGTGAGGTGGTCCG 59.894 55.000 0.00 0.00 39.05 4.79
2383 4420 3.723348 GTCCGCTTGGAACGCCAC 61.723 66.667 0.00 0.00 45.94 5.01
2411 4448 2.430694 CAACCATGTCTCGTCCTCCATA 59.569 50.000 0.00 0.00 0.00 2.74
2416 4453 3.367646 TGTCTCGTCCTCCATAAGTCT 57.632 47.619 0.00 0.00 0.00 3.24
2448 4485 1.546476 CATAGTACTCCCTCCATCCGC 59.454 57.143 0.00 0.00 0.00 5.54
2454 4491 1.843851 ACTCCCTCCATCCGCAAATAA 59.156 47.619 0.00 0.00 0.00 1.40
2462 4507 5.394005 CCTCCATCCGCAAATAATTGTTGAA 60.394 40.000 7.64 0.00 38.85 2.69
2525 4574 8.227791 TCATTGCTTCTACAAGTATTTTCGAAC 58.772 33.333 0.00 0.00 31.96 3.95
2530 4579 6.258230 TCTACAAGTATTTTCGAACGGAGA 57.742 37.500 0.00 0.00 0.00 3.71
2531 4580 6.320171 TCTACAAGTATTTTCGAACGGAGAG 58.680 40.000 0.00 0.00 0.00 3.20
2532 4581 5.130292 ACAAGTATTTTCGAACGGAGAGA 57.870 39.130 0.00 0.00 0.00 3.10
2533 4582 5.162075 ACAAGTATTTTCGAACGGAGAGAG 58.838 41.667 0.00 0.00 0.00 3.20
2534 4583 3.771798 AGTATTTTCGAACGGAGAGAGC 58.228 45.455 0.00 0.00 0.00 4.09
2539 4588 0.735471 TCGAACGGAGAGAGCATCAG 59.265 55.000 0.00 0.00 37.82 2.90
2564 4613 3.134127 AAAAGCATCGGAGGCGGC 61.134 61.111 9.16 0.00 36.08 6.53
2582 4631 2.737376 GGCTCGTGGTTGTCGGTC 60.737 66.667 0.00 0.00 0.00 4.79
2591 4640 0.252197 GGTTGTCGGTCCATAAGGCT 59.748 55.000 0.00 0.00 33.74 4.58
2636 4685 2.031163 GCGTTGTGCTCAGGAGGT 59.969 61.111 0.00 0.00 41.73 3.85
2692 4741 1.515081 TTTCGGCTTAACTCGTTGGG 58.485 50.000 0.00 0.00 0.00 4.12
2702 4751 1.828979 ACTCGTTGGGTGTTGTGTTT 58.171 45.000 0.00 0.00 0.00 2.83
2710 4759 0.379316 GGTGTTGTGTTTCGTGGACC 59.621 55.000 0.00 0.00 0.00 4.46
2712 4761 0.108281 TGTTGTGTTTCGTGGACCGA 60.108 50.000 0.00 0.00 45.66 4.69
2720 4769 3.411351 CGTGGACCGAACCTTGCG 61.411 66.667 0.00 0.00 39.56 4.85
2732 4781 3.365265 CTTGCGGGCGGCTTTCTT 61.365 61.111 18.19 0.00 44.05 2.52
2740 4789 2.436115 CGGCTTTCTTCGGGTCCC 60.436 66.667 0.00 0.00 0.00 4.46
2741 4790 2.754375 GGCTTTCTTCGGGTCCCA 59.246 61.111 9.12 0.00 0.00 4.37
2745 4794 1.886655 GCTTTCTTCGGGTCCCATGTT 60.887 52.381 9.12 0.00 0.00 2.71
2768 4817 1.029947 ATGATGAAACGGGCCGGAAC 61.030 55.000 31.78 19.78 0.00 3.62
2791 4840 2.171725 GGAGCGCGGTGGTGAATAC 61.172 63.158 18.92 0.00 0.00 1.89
2799 4848 3.694734 GCGGTGGTGAATACATTTGATG 58.305 45.455 0.00 0.00 0.00 3.07
2801 4850 4.036734 GCGGTGGTGAATACATTTGATGAT 59.963 41.667 0.00 0.00 0.00 2.45
2802 4851 5.450412 GCGGTGGTGAATACATTTGATGATT 60.450 40.000 0.00 0.00 0.00 2.57
2805 4854 6.974622 GGTGGTGAATACATTTGATGATTGTC 59.025 38.462 0.00 0.00 0.00 3.18
2813 4862 5.643664 ACATTTGATGATTGTCGTTGGATG 58.356 37.500 0.00 0.00 0.00 3.51
2829 4878 4.111255 TGGATGACCAAAAATGTCCAGA 57.889 40.909 0.00 0.00 43.91 3.86
2830 4879 4.676109 TGGATGACCAAAAATGTCCAGAT 58.324 39.130 0.00 0.00 43.91 2.90
2831 4880 4.706476 TGGATGACCAAAAATGTCCAGATC 59.294 41.667 0.00 0.00 43.91 2.75
2832 4881 4.706476 GGATGACCAAAAATGTCCAGATCA 59.294 41.667 0.00 0.00 35.97 2.92
2833 4882 5.361857 GGATGACCAAAAATGTCCAGATCAT 59.638 40.000 0.00 0.00 35.97 2.45
2834 4883 6.127253 GGATGACCAAAAATGTCCAGATCATT 60.127 38.462 0.00 0.00 35.37 2.57
2835 4884 6.028146 TGACCAAAAATGTCCAGATCATTG 57.972 37.500 0.00 0.00 35.95 2.82
2836 4885 5.774184 TGACCAAAAATGTCCAGATCATTGA 59.226 36.000 0.00 0.00 35.95 2.57
2837 4886 6.071784 TGACCAAAAATGTCCAGATCATTGAG 60.072 38.462 0.00 0.00 35.95 3.02
2838 4887 5.776716 ACCAAAAATGTCCAGATCATTGAGT 59.223 36.000 0.00 0.00 35.95 3.41
2839 4888 6.268387 ACCAAAAATGTCCAGATCATTGAGTT 59.732 34.615 0.00 0.00 35.95 3.01
2840 4889 7.156673 CCAAAAATGTCCAGATCATTGAGTTT 58.843 34.615 0.00 0.00 35.95 2.66
2841 4890 7.117236 CCAAAAATGTCCAGATCATTGAGTTTG 59.883 37.037 0.00 0.00 35.95 2.93
2842 4891 4.978083 ATGTCCAGATCATTGAGTTTGC 57.022 40.909 0.00 0.00 0.00 3.68
2843 4892 4.025040 TGTCCAGATCATTGAGTTTGCT 57.975 40.909 0.00 0.00 0.00 3.91
2844 4893 4.401022 TGTCCAGATCATTGAGTTTGCTT 58.599 39.130 0.00 0.00 0.00 3.91
2845 4894 4.216902 TGTCCAGATCATTGAGTTTGCTTG 59.783 41.667 0.00 0.00 0.00 4.01
2846 4895 4.456911 GTCCAGATCATTGAGTTTGCTTGA 59.543 41.667 0.00 0.00 0.00 3.02
2847 4896 5.048504 GTCCAGATCATTGAGTTTGCTTGAA 60.049 40.000 0.00 0.00 0.00 2.69
2848 4897 5.182570 TCCAGATCATTGAGTTTGCTTGAAG 59.817 40.000 0.00 0.00 0.00 3.02
2849 4898 5.048224 CCAGATCATTGAGTTTGCTTGAAGT 60.048 40.000 0.00 0.00 0.00 3.01
2850 4899 6.444633 CAGATCATTGAGTTTGCTTGAAGTT 58.555 36.000 0.00 0.00 0.00 2.66
2851 4900 6.362551 CAGATCATTGAGTTTGCTTGAAGTTG 59.637 38.462 0.00 0.00 0.00 3.16
2852 4901 5.833406 TCATTGAGTTTGCTTGAAGTTGA 57.167 34.783 0.00 0.00 0.00 3.18
2853 4902 6.206395 TCATTGAGTTTGCTTGAAGTTGAA 57.794 33.333 0.00 0.00 0.00 2.69
2854 4903 6.629128 TCATTGAGTTTGCTTGAAGTTGAAA 58.371 32.000 0.00 0.00 0.00 2.69
2855 4904 7.267128 TCATTGAGTTTGCTTGAAGTTGAAAT 58.733 30.769 0.00 0.00 0.00 2.17
2856 4905 7.765360 TCATTGAGTTTGCTTGAAGTTGAAATT 59.235 29.630 0.00 0.00 0.00 1.82
2857 4906 7.903995 TTGAGTTTGCTTGAAGTTGAAATTT 57.096 28.000 0.00 0.00 0.00 1.82
2858 4907 7.903995 TGAGTTTGCTTGAAGTTGAAATTTT 57.096 28.000 0.00 0.00 0.00 1.82
2859 4908 7.962917 TGAGTTTGCTTGAAGTTGAAATTTTC 58.037 30.769 2.05 2.05 0.00 2.29
2860 4909 7.601886 TGAGTTTGCTTGAAGTTGAAATTTTCA 59.398 29.630 7.74 7.74 38.04 2.69
2861 4910 8.321650 AGTTTGCTTGAAGTTGAAATTTTCAA 57.678 26.923 18.29 18.29 46.68 2.69
2869 4918 2.162319 TGAAATTTTCAAAGGCCCGC 57.838 45.000 9.36 0.00 36.59 6.13
2870 4919 1.270571 TGAAATTTTCAAAGGCCCGCC 60.271 47.619 9.36 0.00 36.59 6.13
2871 4920 0.761802 AAATTTTCAAAGGCCCGCCA 59.238 45.000 8.74 0.00 38.92 5.69
2872 4921 0.034756 AATTTTCAAAGGCCCGCCAC 59.965 50.000 8.74 0.00 38.92 5.01
2873 4922 0.831711 ATTTTCAAAGGCCCGCCACT 60.832 50.000 8.74 0.00 38.92 4.00
2874 4923 0.178987 TTTTCAAAGGCCCGCCACTA 60.179 50.000 8.74 0.00 38.92 2.74
2875 4924 0.891904 TTTCAAAGGCCCGCCACTAC 60.892 55.000 8.74 0.00 38.92 2.73
2876 4925 2.033448 CAAAGGCCCGCCACTACA 59.967 61.111 8.74 0.00 38.92 2.74
2877 4926 1.602323 CAAAGGCCCGCCACTACAA 60.602 57.895 8.74 0.00 38.92 2.41
2878 4927 1.151908 AAAGGCCCGCCACTACAAA 59.848 52.632 8.74 0.00 38.92 2.83
2879 4928 0.468400 AAAGGCCCGCCACTACAAAA 60.468 50.000 8.74 0.00 38.92 2.44
2880 4929 0.251608 AAGGCCCGCCACTACAAAAT 60.252 50.000 8.74 0.00 38.92 1.82
2881 4930 0.965363 AGGCCCGCCACTACAAAATG 60.965 55.000 8.74 0.00 38.92 2.32
2882 4931 0.963355 GGCCCGCCACTACAAAATGA 60.963 55.000 0.00 0.00 35.81 2.57
2883 4932 1.102978 GCCCGCCACTACAAAATGAT 58.897 50.000 0.00 0.00 0.00 2.45
2884 4933 1.065551 GCCCGCCACTACAAAATGATC 59.934 52.381 0.00 0.00 0.00 2.92
2885 4934 2.364632 CCCGCCACTACAAAATGATCA 58.635 47.619 0.00 0.00 0.00 2.92
2886 4935 2.752354 CCCGCCACTACAAAATGATCAA 59.248 45.455 0.00 0.00 0.00 2.57
2887 4936 3.381272 CCCGCCACTACAAAATGATCAAT 59.619 43.478 0.00 0.00 0.00 2.57
2888 4937 4.578516 CCCGCCACTACAAAATGATCAATA 59.421 41.667 0.00 0.00 0.00 1.90
2889 4938 5.277974 CCCGCCACTACAAAATGATCAATAG 60.278 44.000 0.00 0.00 0.00 1.73
2890 4939 5.527214 CCGCCACTACAAAATGATCAATAGA 59.473 40.000 0.00 0.00 0.00 1.98
2891 4940 6.293081 CCGCCACTACAAAATGATCAATAGAG 60.293 42.308 0.00 0.00 0.00 2.43
2892 4941 6.293081 CGCCACTACAAAATGATCAATAGAGG 60.293 42.308 0.00 6.48 0.00 3.69
2893 4942 6.767902 GCCACTACAAAATGATCAATAGAGGA 59.232 38.462 0.00 0.00 0.00 3.71
2894 4943 7.254932 GCCACTACAAAATGATCAATAGAGGAC 60.255 40.741 0.00 0.00 0.00 3.85
2895 4944 7.042456 CCACTACAAAATGATCAATAGAGGACG 60.042 40.741 0.00 0.00 0.00 4.79
2896 4945 7.706607 CACTACAAAATGATCAATAGAGGACGA 59.293 37.037 0.00 0.00 0.00 4.20
2897 4946 7.923344 ACTACAAAATGATCAATAGAGGACGAG 59.077 37.037 0.00 0.00 0.00 4.18
2898 4947 5.525378 ACAAAATGATCAATAGAGGACGAGC 59.475 40.000 0.00 0.00 0.00 5.03
2899 4948 5.543507 AAATGATCAATAGAGGACGAGCT 57.456 39.130 0.00 0.00 0.00 4.09
2900 4949 4.782019 ATGATCAATAGAGGACGAGCTC 57.218 45.455 2.73 2.73 0.00 4.09
2901 4950 2.887783 TGATCAATAGAGGACGAGCTCC 59.112 50.000 8.47 0.00 39.81 4.70
2902 4951 1.309950 TCAATAGAGGACGAGCTCCG 58.690 55.000 8.47 6.07 45.10 4.63
2903 4952 0.312416 CAATAGAGGACGAGCTCCGG 59.688 60.000 8.47 0.00 45.10 5.14
2904 4953 0.824182 AATAGAGGACGAGCTCCGGG 60.824 60.000 8.47 0.00 45.10 5.73
2905 4954 2.700407 ATAGAGGACGAGCTCCGGGG 62.700 65.000 8.47 0.00 45.10 5.73
2906 4955 4.816984 GAGGACGAGCTCCGGGGA 62.817 72.222 4.80 0.00 45.10 4.81
2907 4956 4.824515 AGGACGAGCTCCGGGGAG 62.825 72.222 4.80 10.44 45.10 4.30
2915 4964 2.282446 CTCCGGGGAGCCCTCTAA 59.718 66.667 0.00 0.00 42.67 2.10
2916 4965 1.382695 CTCCGGGGAGCCCTCTAAA 60.383 63.158 0.00 0.00 42.67 1.85
2917 4966 0.981277 CTCCGGGGAGCCCTCTAAAA 60.981 60.000 0.00 0.00 42.67 1.52
2918 4967 0.327191 TCCGGGGAGCCCTCTAAAAT 60.327 55.000 0.00 0.00 42.67 1.82
2919 4968 1.061967 TCCGGGGAGCCCTCTAAAATA 60.062 52.381 0.00 0.00 42.67 1.40
2920 4969 1.985895 CCGGGGAGCCCTCTAAAATAT 59.014 52.381 5.38 0.00 42.67 1.28
2921 4970 2.027100 CCGGGGAGCCCTCTAAAATATC 60.027 54.545 5.38 0.00 42.67 1.63
2922 4971 2.637872 CGGGGAGCCCTCTAAAATATCA 59.362 50.000 5.38 0.00 42.67 2.15
2923 4972 3.264450 CGGGGAGCCCTCTAAAATATCAT 59.736 47.826 5.38 0.00 42.67 2.45
2924 4973 4.469945 CGGGGAGCCCTCTAAAATATCATA 59.530 45.833 5.38 0.00 42.67 2.15
2925 4974 5.131142 CGGGGAGCCCTCTAAAATATCATAT 59.869 44.000 5.38 0.00 42.67 1.78
2926 4975 6.353082 CGGGGAGCCCTCTAAAATATCATATT 60.353 42.308 5.38 0.00 42.67 1.28
2927 4976 7.057264 GGGGAGCCCTCTAAAATATCATATTC 58.943 42.308 5.38 0.00 41.34 1.75
2928 4977 7.092219 GGGGAGCCCTCTAAAATATCATATTCT 60.092 40.741 5.38 0.00 41.34 2.40
2929 4978 7.990314 GGGAGCCCTCTAAAATATCATATTCTC 59.010 40.741 0.00 0.00 0.00 2.87
2930 4979 8.543774 GGAGCCCTCTAAAATATCATATTCTCA 58.456 37.037 0.00 0.00 0.00 3.27
2940 4989 9.827198 AAAATATCATATTCTCATAGCCCCAAA 57.173 29.630 0.00 0.00 0.00 3.28
2946 4995 9.827198 TCATATTCTCATAGCCCCAAATTATTT 57.173 29.630 0.00 0.00 0.00 1.40
2949 4998 7.969690 TTCTCATAGCCCCAAATTATTTTGA 57.030 32.000 10.87 0.00 44.11 2.69
2950 4999 7.969690 TCTCATAGCCCCAAATTATTTTGAA 57.030 32.000 10.87 0.00 44.11 2.69
2951 5000 8.372877 TCTCATAGCCCCAAATTATTTTGAAA 57.627 30.769 10.87 0.00 44.11 2.69
2952 5001 8.991275 TCTCATAGCCCCAAATTATTTTGAAAT 58.009 29.630 10.87 0.00 44.11 2.17
2953 5002 9.617523 CTCATAGCCCCAAATTATTTTGAAATT 57.382 29.630 10.87 0.00 44.11 1.82
2954 5003 9.972106 TCATAGCCCCAAATTATTTTGAAATTT 57.028 25.926 10.87 0.00 44.11 1.82
3024 5073 9.850628 TTTCTTAATAATATACTCGTCCATCCG 57.149 33.333 0.00 0.00 0.00 4.18
3025 5074 7.993101 TCTTAATAATATACTCGTCCATCCGG 58.007 38.462 0.00 0.00 0.00 5.14
3026 5075 7.830697 TCTTAATAATATACTCGTCCATCCGGA 59.169 37.037 6.61 6.61 39.79 5.14
3027 5076 6.845758 AATAATATACTCGTCCATCCGGAA 57.154 37.500 9.01 0.00 45.20 4.30
3028 5077 6.845758 ATAATATACTCGTCCATCCGGAAA 57.154 37.500 9.01 0.00 45.20 3.13
3029 5078 5.740290 AATATACTCGTCCATCCGGAAAT 57.260 39.130 9.01 0.00 45.20 2.17
3030 5079 6.845758 AATATACTCGTCCATCCGGAAATA 57.154 37.500 9.01 0.00 45.20 1.40
3031 5080 2.884894 ACTCGTCCATCCGGAAATAC 57.115 50.000 9.01 5.75 45.20 1.89
3032 5081 2.385803 ACTCGTCCATCCGGAAATACT 58.614 47.619 9.01 0.00 45.20 2.12
3033 5082 2.764572 ACTCGTCCATCCGGAAATACTT 59.235 45.455 9.01 0.00 45.20 2.24
3034 5083 3.123804 CTCGTCCATCCGGAAATACTTG 58.876 50.000 9.01 0.00 45.20 3.16
3035 5084 2.498481 TCGTCCATCCGGAAATACTTGT 59.502 45.455 9.01 0.00 45.20 3.16
3036 5085 2.864343 CGTCCATCCGGAAATACTTGTC 59.136 50.000 9.01 0.00 45.20 3.18
3037 5086 2.864343 GTCCATCCGGAAATACTTGTCG 59.136 50.000 9.01 0.00 45.20 4.35
3038 5087 2.761767 TCCATCCGGAAATACTTGTCGA 59.238 45.455 9.01 0.00 38.83 4.20
3039 5088 3.196039 TCCATCCGGAAATACTTGTCGAA 59.804 43.478 9.01 0.00 38.83 3.71
3040 5089 3.555956 CCATCCGGAAATACTTGTCGAAG 59.444 47.826 9.01 0.00 35.07 3.79
3041 5090 4.430007 CATCCGGAAATACTTGTCGAAGA 58.570 43.478 9.01 0.00 32.98 2.87
3042 5091 4.524316 TCCGGAAATACTTGTCGAAGAA 57.476 40.909 0.00 0.00 39.69 2.52
3043 5092 4.885413 TCCGGAAATACTTGTCGAAGAAA 58.115 39.130 0.00 0.00 39.69 2.52
3044 5093 5.484715 TCCGGAAATACTTGTCGAAGAAAT 58.515 37.500 0.00 0.00 39.69 2.17
3045 5094 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
3046 5095 5.447279 CCGGAAATACTTGTCGAAGAAATGG 60.447 44.000 0.00 0.00 39.69 3.16
3047 5096 5.350365 CGGAAATACTTGTCGAAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
3048 5097 6.037172 CGGAAATACTTGTCGAAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
3049 5098 7.223971 CGGAAATACTTGTCGAAGAAATGGATA 59.776 37.037 0.00 0.00 39.69 2.59
3050 5099 9.057089 GGAAATACTTGTCGAAGAAATGGATAT 57.943 33.333 0.00 0.00 39.69 1.63
3053 5102 9.490379 AATACTTGTCGAAGAAATGGATATACC 57.510 33.333 0.00 0.00 39.69 2.73
3054 5103 7.125792 ACTTGTCGAAGAAATGGATATACCT 57.874 36.000 0.00 0.00 39.69 3.08
3055 5104 8.246430 ACTTGTCGAAGAAATGGATATACCTA 57.754 34.615 0.00 0.00 39.69 3.08
3056 5105 8.361139 ACTTGTCGAAGAAATGGATATACCTAG 58.639 37.037 0.00 0.00 39.69 3.02
3057 5106 8.473358 TTGTCGAAGAAATGGATATACCTAGA 57.527 34.615 0.00 0.00 39.69 2.43
3058 5107 8.651589 TGTCGAAGAAATGGATATACCTAGAT 57.348 34.615 0.00 0.00 39.69 1.98
3059 5108 8.523658 TGTCGAAGAAATGGATATACCTAGATG 58.476 37.037 0.00 0.00 39.69 2.90
3060 5109 8.524487 GTCGAAGAAATGGATATACCTAGATGT 58.476 37.037 0.00 0.00 39.69 3.06
3061 5110 9.749340 TCGAAGAAATGGATATACCTAGATGTA 57.251 33.333 0.00 0.00 39.86 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.522553 GCAGGTACATGTGAACTAGGTC 58.477 50.000 9.11 0.00 0.00 3.85
114 115 3.201487 ACATTGATCTTCATGAGGCCAGA 59.799 43.478 5.01 0.00 0.00 3.86
166 171 2.497792 TATGGCAGCAACCACCCCAG 62.498 60.000 0.00 0.00 44.17 4.45
200 205 0.602905 ACGAGCCAAGAAAGTTCCCG 60.603 55.000 0.00 0.00 0.00 5.14
203 208 1.195674 GCTGACGAGCCAAGAAAGTTC 59.804 52.381 0.00 0.00 39.57 3.01
410 415 5.577164 GCATGAAGAAAAACTAGCTCTACGA 59.423 40.000 0.00 0.00 0.00 3.43
529 534 0.393077 CTTTGGGTCGTGAGGAGTGT 59.607 55.000 0.00 0.00 0.00 3.55
548 553 1.066430 TGGAATGGAGGAAGTACACGC 60.066 52.381 0.00 0.00 0.00 5.34
568 573 8.413229 CGTTCCAAAATAGATGACCCATATTTT 58.587 33.333 0.00 0.00 38.83 1.82
569 574 7.014230 CCGTTCCAAAATAGATGACCCATATTT 59.986 37.037 0.00 0.00 32.00 1.40
570 575 6.490040 CCGTTCCAAAATAGATGACCCATATT 59.510 38.462 0.00 0.00 0.00 1.28
571 576 6.003950 CCGTTCCAAAATAGATGACCCATAT 58.996 40.000 0.00 0.00 0.00 1.78
573 578 4.080015 TCCGTTCCAAAATAGATGACCCAT 60.080 41.667 0.00 0.00 0.00 4.00
574 579 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
575 580 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
577 582 5.661458 TCTCTCCGTTCCAAAATAGATGAC 58.339 41.667 0.00 0.00 0.00 3.06
578 583 5.422331 ACTCTCTCCGTTCCAAAATAGATGA 59.578 40.000 0.00 0.00 0.00 2.92
579 584 5.665459 ACTCTCTCCGTTCCAAAATAGATG 58.335 41.667 0.00 0.00 0.00 2.90
580 585 5.941555 ACTCTCTCCGTTCCAAAATAGAT 57.058 39.130 0.00 0.00 0.00 1.98
581 586 5.126707 GGTACTCTCTCCGTTCCAAAATAGA 59.873 44.000 0.00 0.00 0.00 1.98
582 587 5.127356 AGGTACTCTCTCCGTTCCAAAATAG 59.873 44.000 0.00 0.00 0.00 1.73
584 589 3.838903 AGGTACTCTCTCCGTTCCAAAAT 59.161 43.478 0.00 0.00 0.00 1.82
585 590 3.236896 AGGTACTCTCTCCGTTCCAAAA 58.763 45.455 0.00 0.00 0.00 2.44
586 591 2.885616 AGGTACTCTCTCCGTTCCAAA 58.114 47.619 0.00 0.00 0.00 3.28
587 592 2.599408 AGGTACTCTCTCCGTTCCAA 57.401 50.000 0.00 0.00 0.00 3.53
588 593 3.201487 TGATAGGTACTCTCTCCGTTCCA 59.799 47.826 0.00 0.00 41.75 3.53
589 594 3.818180 TGATAGGTACTCTCTCCGTTCC 58.182 50.000 0.00 0.00 41.75 3.62
590 595 5.831702 TTTGATAGGTACTCTCTCCGTTC 57.168 43.478 0.00 0.00 41.75 3.95
591 596 6.793505 ATTTTGATAGGTACTCTCTCCGTT 57.206 37.500 0.00 0.00 41.75 4.44
592 597 6.154706 ACAATTTTGATAGGTACTCTCTCCGT 59.845 38.462 0.00 0.00 41.75 4.69
593 598 6.574350 ACAATTTTGATAGGTACTCTCTCCG 58.426 40.000 0.00 0.00 41.75 4.63
594 599 7.787028 AGACAATTTTGATAGGTACTCTCTCC 58.213 38.462 0.00 0.00 41.75 3.71
596 601 8.816894 TCAAGACAATTTTGATAGGTACTCTCT 58.183 33.333 0.00 0.00 32.61 3.10
597 602 9.436957 TTCAAGACAATTTTGATAGGTACTCTC 57.563 33.333 0.00 0.00 34.76 3.20
598 603 9.965902 ATTCAAGACAATTTTGATAGGTACTCT 57.034 29.630 0.00 0.00 34.76 3.24
600 605 9.739276 TGATTCAAGACAATTTTGATAGGTACT 57.261 29.630 0.00 0.00 34.76 2.73
608 613 8.914654 CGCTTTATTGATTCAAGACAATTTTGA 58.085 29.630 5.21 0.00 37.75 2.69
609 614 8.914654 TCGCTTTATTGATTCAAGACAATTTTG 58.085 29.630 5.21 0.00 37.75 2.44
610 615 9.132521 CTCGCTTTATTGATTCAAGACAATTTT 57.867 29.630 5.21 0.00 37.75 1.82
611 616 7.274250 GCTCGCTTTATTGATTCAAGACAATTT 59.726 33.333 5.21 0.00 37.75 1.82
612 617 6.749118 GCTCGCTTTATTGATTCAAGACAATT 59.251 34.615 5.21 0.00 37.75 2.32
613 618 6.261118 GCTCGCTTTATTGATTCAAGACAAT 58.739 36.000 5.21 0.00 39.53 2.71
614 619 5.631026 GCTCGCTTTATTGATTCAAGACAA 58.369 37.500 5.21 0.00 0.00 3.18
615 620 4.201714 CGCTCGCTTTATTGATTCAAGACA 60.202 41.667 5.21 0.00 0.00 3.41
616 621 4.032900 TCGCTCGCTTTATTGATTCAAGAC 59.967 41.667 5.21 0.00 0.00 3.01
618 623 4.268644 TCTCGCTCGCTTTATTGATTCAAG 59.731 41.667 5.21 0.00 0.00 3.02
619 624 4.180817 TCTCGCTCGCTTTATTGATTCAA 58.819 39.130 0.75 0.75 0.00 2.69
620 625 3.780902 TCTCGCTCGCTTTATTGATTCA 58.219 40.909 0.00 0.00 0.00 2.57
621 626 4.981389 ATCTCGCTCGCTTTATTGATTC 57.019 40.909 0.00 0.00 0.00 2.52
622 627 6.844696 TTTATCTCGCTCGCTTTATTGATT 57.155 33.333 0.00 0.00 0.00 2.57
624 629 6.656314 TTTTTATCTCGCTCGCTTTATTGA 57.344 33.333 0.00 0.00 0.00 2.57
653 2260 1.868251 GCTCCGCGTCGAGTTACTG 60.868 63.158 4.92 0.00 32.11 2.74
765 2376 0.635009 ATAAGGGGACGAGAGGTGGA 59.365 55.000 0.00 0.00 0.00 4.02
775 2386 4.835678 TGACGAGGTTTTAATAAGGGGAC 58.164 43.478 0.00 0.00 0.00 4.46
862 2494 3.130516 ACCGTCGAGAAAGCAAGATATCA 59.869 43.478 5.32 0.00 0.00 2.15
899 2531 3.441922 TGAACCACAGAGAAGATCGAGAG 59.558 47.826 0.00 0.00 0.00 3.20
905 2537 5.388654 ACCAAAATGAACCACAGAGAAGAT 58.611 37.500 0.00 0.00 0.00 2.40
906 2538 4.792068 ACCAAAATGAACCACAGAGAAGA 58.208 39.130 0.00 0.00 0.00 2.87
913 2545 4.019858 TGTGAGAACCAAAATGAACCACA 58.980 39.130 0.00 0.00 0.00 4.17
914 2546 4.647424 TGTGAGAACCAAAATGAACCAC 57.353 40.909 0.00 0.00 0.00 4.16
916 2548 5.262588 AGTTGTGAGAACCAAAATGAACC 57.737 39.130 0.00 0.00 0.00 3.62
917 2549 4.970003 CGAGTTGTGAGAACCAAAATGAAC 59.030 41.667 0.00 0.00 0.00 3.18
918 2550 4.638421 ACGAGTTGTGAGAACCAAAATGAA 59.362 37.500 0.00 0.00 0.00 2.57
919 2551 4.196193 ACGAGTTGTGAGAACCAAAATGA 58.804 39.130 0.00 0.00 0.00 2.57
920 2552 4.273480 AGACGAGTTGTGAGAACCAAAATG 59.727 41.667 0.00 0.00 0.00 2.32
921 2553 4.451900 AGACGAGTTGTGAGAACCAAAAT 58.548 39.130 0.00 0.00 0.00 1.82
922 2554 3.869065 AGACGAGTTGTGAGAACCAAAA 58.131 40.909 0.00 0.00 0.00 2.44
923 2555 3.536956 AGACGAGTTGTGAGAACCAAA 57.463 42.857 0.00 0.00 0.00 3.28
924 2556 3.132289 AGAAGACGAGTTGTGAGAACCAA 59.868 43.478 0.00 0.00 0.00 3.67
925 2557 2.693591 AGAAGACGAGTTGTGAGAACCA 59.306 45.455 0.00 0.00 0.00 3.67
926 2558 3.372660 AGAAGACGAGTTGTGAGAACC 57.627 47.619 0.00 0.00 0.00 3.62
927 2559 4.113354 ACAAGAAGACGAGTTGTGAGAAC 58.887 43.478 0.00 0.00 33.16 3.01
928 2560 4.386867 ACAAGAAGACGAGTTGTGAGAA 57.613 40.909 0.00 0.00 33.16 2.87
929 2561 4.386867 AACAAGAAGACGAGTTGTGAGA 57.613 40.909 0.00 0.00 34.64 3.27
930 2562 4.783450 GCAAACAAGAAGACGAGTTGTGAG 60.783 45.833 0.00 0.00 34.64 3.51
931 2563 3.063452 GCAAACAAGAAGACGAGTTGTGA 59.937 43.478 0.00 0.00 34.64 3.58
932 2564 3.354397 GCAAACAAGAAGACGAGTTGTG 58.646 45.455 0.00 0.00 34.64 3.33
979 2612 0.179084 GATCGATCGGCCAACCAAGA 60.179 55.000 16.41 0.00 34.57 3.02
1150 2992 3.066760 AGAGAAACGGAGCAAAACCAAAG 59.933 43.478 0.00 0.00 0.00 2.77
1186 3029 1.289066 CGAACAGCAGGAACTCCGA 59.711 57.895 0.00 0.00 42.08 4.55
1187 3030 3.862124 CGAACAGCAGGAACTCCG 58.138 61.111 0.00 0.00 42.08 4.63
1225 3068 0.321653 ACAACCGGATCTTGAGGCAC 60.322 55.000 9.46 0.00 0.00 5.01
1294 3137 4.163078 GGAGGATTTCTGAACAGATCTGGA 59.837 45.833 26.08 11.14 37.29 3.86
1351 3197 4.601019 AGCAGAACTGAATCGTGTTTTTG 58.399 39.130 5.97 0.00 0.00 2.44
1356 3202 4.900635 AAAAAGCAGAACTGAATCGTGT 57.099 36.364 5.97 0.00 0.00 4.49
1377 3226 7.218228 TGAAGATTCTACGGTTGTAGTACAA 57.782 36.000 11.75 11.75 46.70 2.41
1378 3227 6.822667 TGAAGATTCTACGGTTGTAGTACA 57.177 37.500 0.00 0.00 46.70 2.90
1379 3228 7.311408 ACTTGAAGATTCTACGGTTGTAGTAC 58.689 38.462 0.00 0.00 46.70 2.73
1380 3229 7.458409 ACTTGAAGATTCTACGGTTGTAGTA 57.542 36.000 0.00 0.00 46.70 1.82
1381 3230 6.342338 ACTTGAAGATTCTACGGTTGTAGT 57.658 37.500 0.00 0.00 46.70 2.73
1400 3249 8.638685 ACAAATCTGTGAGAATTCAAAACTTG 57.361 30.769 8.44 5.96 34.49 3.16
1438 3301 3.423539 TCTTGCTAAATCCTGCACAGT 57.576 42.857 0.00 0.00 39.05 3.55
1561 3425 2.126850 CAGCTCTTGTCGCGACGA 60.127 61.111 31.88 29.34 0.00 4.20
1562 3426 3.832171 GCAGCTCTTGTCGCGACG 61.832 66.667 31.88 19.95 0.00 5.12
1715 3579 1.640604 CGCGGAGTAGAGGTCGTAC 59.359 63.158 0.00 0.00 0.00 3.67
1799 3663 2.190578 CAAGGGTCCTCGGCCATC 59.809 66.667 2.24 0.00 0.00 3.51
1881 3748 2.502492 CCGGCATCGACCTCCTCAT 61.502 63.158 0.00 0.00 39.00 2.90
1910 3780 0.811915 TGTAGCTCTGCGAGAACTCC 59.188 55.000 9.32 0.00 0.00 3.85
2072 3948 2.234168 AGATCATCATCAGATCCTGCGG 59.766 50.000 0.00 0.00 42.19 5.69
2186 4074 0.835971 GCCCCCAAACCAGTTCCAAT 60.836 55.000 0.00 0.00 0.00 3.16
2242 4130 4.671766 CGCATACGAGATATCAACGGATCA 60.672 45.833 20.38 8.15 43.93 2.92
2246 4134 2.929960 ACGCATACGAGATATCAACGG 58.070 47.619 20.38 9.29 43.93 4.44
2254 4142 3.637998 AACCGAATACGCATACGAGAT 57.362 42.857 0.00 0.00 43.93 2.75
2261 4149 4.745125 CAGATTCTGTAACCGAATACGCAT 59.255 41.667 5.46 0.00 38.29 4.73
2342 4371 3.632145 ACCTCACAAACTGAACCAATCAC 59.368 43.478 0.00 0.00 33.47 3.06
2369 4406 3.083600 GATCGTGGCGTTCCAAGCG 62.084 63.158 0.00 0.00 45.53 4.68
2370 4407 1.298859 AAGATCGTGGCGTTCCAAGC 61.299 55.000 0.00 0.00 45.53 4.01
2383 4420 2.854777 GACGAGACATGGTTGAAGATCG 59.145 50.000 0.00 0.00 35.21 3.69
2497 4542 8.946085 TCGAAAATACTTGTAGAAGCAATGATT 58.054 29.630 0.00 0.00 31.68 2.57
2504 4549 5.346822 TCCGTTCGAAAATACTTGTAGAAGC 59.653 40.000 0.00 0.00 31.68 3.86
2509 4554 6.258230 TCTCTCCGTTCGAAAATACTTGTA 57.742 37.500 0.00 0.00 0.00 2.41
2525 4574 0.311790 GCTCTCTGATGCTCTCTCCG 59.688 60.000 0.00 0.00 0.00 4.63
2530 4579 3.336468 CTTTTGTGCTCTCTGATGCTCT 58.664 45.455 4.82 0.00 0.00 4.09
2531 4580 2.159544 GCTTTTGTGCTCTCTGATGCTC 60.160 50.000 4.82 2.41 0.00 4.26
2532 4581 1.811359 GCTTTTGTGCTCTCTGATGCT 59.189 47.619 4.82 0.00 0.00 3.79
2533 4582 1.538512 TGCTTTTGTGCTCTCTGATGC 59.461 47.619 0.00 0.00 0.00 3.91
2534 4583 3.485381 CGATGCTTTTGTGCTCTCTGATG 60.485 47.826 0.00 0.00 0.00 3.07
2539 4588 1.396301 CTCCGATGCTTTTGTGCTCTC 59.604 52.381 0.00 0.00 0.00 3.20
2564 4613 4.657824 ACCGACAACCACGAGCCG 62.658 66.667 0.00 0.00 0.00 5.52
2571 4620 0.035820 GCCTTATGGACCGACAACCA 60.036 55.000 0.00 0.00 40.57 3.67
2575 4624 0.392461 GCAAGCCTTATGGACCGACA 60.392 55.000 0.00 0.00 34.57 4.35
2578 4627 0.532862 ATCGCAAGCCTTATGGACCG 60.533 55.000 0.00 0.00 34.57 4.79
2582 4631 3.557207 GCAATCGCAAGCCTTATGG 57.443 52.632 0.00 0.00 38.36 2.74
2614 4663 2.967076 CTGAGCACAACGCCACGT 60.967 61.111 0.00 0.00 44.04 4.49
2615 4664 3.716006 CCTGAGCACAACGCCACG 61.716 66.667 0.00 0.00 44.04 4.94
2616 4665 2.280797 TCCTGAGCACAACGCCAC 60.281 61.111 0.00 0.00 44.04 5.01
2619 4668 2.029844 GACCTCCTGAGCACAACGC 61.030 63.158 0.00 0.00 42.91 4.84
2620 4669 1.374758 GGACCTCCTGAGCACAACG 60.375 63.158 0.00 0.00 0.00 4.10
2621 4670 0.603975 GTGGACCTCCTGAGCACAAC 60.604 60.000 0.00 0.00 36.82 3.32
2624 4673 1.004440 GTGTGGACCTCCTGAGCAC 60.004 63.158 0.00 0.00 36.82 4.40
2625 4674 1.152247 AGTGTGGACCTCCTGAGCA 60.152 57.895 0.00 0.00 36.82 4.26
2655 4704 0.464916 AAAAACAGGGCGGAGAACGT 60.465 50.000 0.00 0.00 46.52 3.99
2676 4725 0.601841 ACACCCAACGAGTTAAGCCG 60.602 55.000 0.00 0.00 0.00 5.52
2682 4731 1.828979 AACACAACACCCAACGAGTT 58.171 45.000 0.00 0.00 0.00 3.01
2687 4736 1.468395 CCACGAAACACAACACCCAAC 60.468 52.381 0.00 0.00 0.00 3.77
2692 4741 3.909957 GGTCCACGAAACACAACAC 57.090 52.632 0.00 0.00 0.00 3.32
2720 4769 4.717313 ACCCGAAGAAAGCCGCCC 62.717 66.667 0.00 0.00 0.00 6.13
2727 4776 1.546773 CCAACATGGGACCCGAAGAAA 60.547 52.381 5.91 0.00 32.67 2.52
2729 4778 1.682849 CCAACATGGGACCCGAAGA 59.317 57.895 5.91 0.00 32.67 2.87
2740 4789 2.099592 CCCGTTTCATCATCCCAACATG 59.900 50.000 0.00 0.00 0.00 3.21
2741 4790 2.378038 CCCGTTTCATCATCCCAACAT 58.622 47.619 0.00 0.00 0.00 2.71
2745 4794 1.077068 GGCCCGTTTCATCATCCCA 60.077 57.895 0.00 0.00 0.00 4.37
2750 4799 1.673009 GTTCCGGCCCGTTTCATCA 60.673 57.895 0.85 0.00 0.00 3.07
2778 4827 3.376859 TCATCAAATGTATTCACCACCGC 59.623 43.478 0.00 0.00 0.00 5.68
2781 4830 6.688385 CGACAATCATCAAATGTATTCACCAC 59.312 38.462 0.00 0.00 0.00 4.16
2782 4831 6.374053 ACGACAATCATCAAATGTATTCACCA 59.626 34.615 0.00 0.00 0.00 4.17
2785 4834 7.120432 TCCAACGACAATCATCAAATGTATTCA 59.880 33.333 0.00 0.00 0.00 2.57
2786 4835 7.471721 TCCAACGACAATCATCAAATGTATTC 58.528 34.615 0.00 0.00 0.00 1.75
2791 4840 5.740569 GTCATCCAACGACAATCATCAAATG 59.259 40.000 0.00 0.00 33.43 2.32
2813 4862 6.071728 ACTCAATGATCTGGACATTTTTGGTC 60.072 38.462 0.00 0.00 36.07 4.02
2823 4872 4.456911 TCAAGCAAACTCAATGATCTGGAC 59.543 41.667 0.00 0.00 0.00 4.02
2828 4877 6.441274 TCAACTTCAAGCAAACTCAATGATC 58.559 36.000 0.00 0.00 0.00 2.92
2829 4878 6.395426 TCAACTTCAAGCAAACTCAATGAT 57.605 33.333 0.00 0.00 0.00 2.45
2830 4879 5.833406 TCAACTTCAAGCAAACTCAATGA 57.167 34.783 0.00 0.00 0.00 2.57
2831 4880 6.890663 TTTCAACTTCAAGCAAACTCAATG 57.109 33.333 0.00 0.00 0.00 2.82
2832 4881 8.496707 AAATTTCAACTTCAAGCAAACTCAAT 57.503 26.923 0.00 0.00 0.00 2.57
2833 4882 7.903995 AAATTTCAACTTCAAGCAAACTCAA 57.096 28.000 0.00 0.00 0.00 3.02
2834 4883 7.601886 TGAAAATTTCAACTTCAAGCAAACTCA 59.398 29.630 5.87 0.00 36.59 3.41
2835 4884 7.962917 TGAAAATTTCAACTTCAAGCAAACTC 58.037 30.769 5.87 0.00 36.59 3.01
2836 4885 7.903995 TGAAAATTTCAACTTCAAGCAAACT 57.096 28.000 5.87 0.00 36.59 2.66
2850 4899 1.270571 GGCGGGCCTTTGAAAATTTCA 60.271 47.619 4.03 4.03 38.04 2.69
2851 4900 1.270571 TGGCGGGCCTTTGAAAATTTC 60.271 47.619 11.55 0.00 36.94 2.17
2852 4901 0.761802 TGGCGGGCCTTTGAAAATTT 59.238 45.000 11.55 0.00 36.94 1.82
2853 4902 0.034756 GTGGCGGGCCTTTGAAAATT 59.965 50.000 11.55 0.00 36.94 1.82
2854 4903 0.831711 AGTGGCGGGCCTTTGAAAAT 60.832 50.000 11.55 0.00 36.94 1.82
2855 4904 0.178987 TAGTGGCGGGCCTTTGAAAA 60.179 50.000 11.55 0.00 36.94 2.29
2856 4905 0.891904 GTAGTGGCGGGCCTTTGAAA 60.892 55.000 11.55 0.00 36.94 2.69
2857 4906 1.302993 GTAGTGGCGGGCCTTTGAA 60.303 57.895 11.55 0.00 36.94 2.69
2858 4907 2.058125 TTGTAGTGGCGGGCCTTTGA 62.058 55.000 11.55 0.00 36.94 2.69
2859 4908 1.175983 TTTGTAGTGGCGGGCCTTTG 61.176 55.000 11.55 0.00 36.94 2.77
2860 4909 0.468400 TTTTGTAGTGGCGGGCCTTT 60.468 50.000 11.55 1.67 36.94 3.11
2861 4910 0.251608 ATTTTGTAGTGGCGGGCCTT 60.252 50.000 11.55 2.04 36.94 4.35
2862 4911 0.965363 CATTTTGTAGTGGCGGGCCT 60.965 55.000 11.55 0.54 36.94 5.19
2863 4912 0.963355 TCATTTTGTAGTGGCGGGCC 60.963 55.000 1.86 1.86 0.00 5.80
2864 4913 1.065551 GATCATTTTGTAGTGGCGGGC 59.934 52.381 0.00 0.00 0.00 6.13
2865 4914 2.364632 TGATCATTTTGTAGTGGCGGG 58.635 47.619 0.00 0.00 0.00 6.13
2866 4915 4.637483 ATTGATCATTTTGTAGTGGCGG 57.363 40.909 0.00 0.00 0.00 6.13
2867 4916 6.293081 CCTCTATTGATCATTTTGTAGTGGCG 60.293 42.308 0.00 0.00 0.00 5.69
2868 4917 6.767902 TCCTCTATTGATCATTTTGTAGTGGC 59.232 38.462 0.00 0.00 0.00 5.01
2869 4918 7.042456 CGTCCTCTATTGATCATTTTGTAGTGG 60.042 40.741 0.00 5.54 0.00 4.00
2870 4919 7.706607 TCGTCCTCTATTGATCATTTTGTAGTG 59.293 37.037 0.00 0.00 0.00 2.74
2871 4920 7.782049 TCGTCCTCTATTGATCATTTTGTAGT 58.218 34.615 0.00 0.00 0.00 2.73
2872 4921 7.095857 GCTCGTCCTCTATTGATCATTTTGTAG 60.096 40.741 0.00 0.00 0.00 2.74
2873 4922 6.701841 GCTCGTCCTCTATTGATCATTTTGTA 59.298 38.462 0.00 0.00 0.00 2.41
2874 4923 5.525378 GCTCGTCCTCTATTGATCATTTTGT 59.475 40.000 0.00 0.00 0.00 2.83
2875 4924 5.757320 AGCTCGTCCTCTATTGATCATTTTG 59.243 40.000 0.00 0.00 0.00 2.44
2876 4925 5.923204 AGCTCGTCCTCTATTGATCATTTT 58.077 37.500 0.00 0.00 0.00 1.82
2877 4926 5.510520 GGAGCTCGTCCTCTATTGATCATTT 60.511 44.000 7.83 0.00 42.99 2.32
2878 4927 4.021544 GGAGCTCGTCCTCTATTGATCATT 60.022 45.833 7.83 0.00 42.99 2.57
2879 4928 3.509575 GGAGCTCGTCCTCTATTGATCAT 59.490 47.826 7.83 0.00 42.99 2.45
2880 4929 2.887783 GGAGCTCGTCCTCTATTGATCA 59.112 50.000 7.83 0.00 42.99 2.92
2881 4930 2.095466 CGGAGCTCGTCCTCTATTGATC 60.095 54.545 7.83 0.00 44.35 2.92
2882 4931 1.883275 CGGAGCTCGTCCTCTATTGAT 59.117 52.381 7.83 0.00 44.35 2.57
2883 4932 1.309950 CGGAGCTCGTCCTCTATTGA 58.690 55.000 7.83 0.00 44.35 2.57
2884 4933 0.312416 CCGGAGCTCGTCCTCTATTG 59.688 60.000 7.83 0.00 44.35 1.90
2885 4934 0.824182 CCCGGAGCTCGTCCTCTATT 60.824 60.000 0.73 0.00 44.35 1.73
2886 4935 1.228306 CCCGGAGCTCGTCCTCTAT 60.228 63.158 0.73 0.00 44.35 1.98
2887 4936 2.192443 CCCGGAGCTCGTCCTCTA 59.808 66.667 0.73 0.00 44.35 2.43
2888 4937 4.824515 CCCCGGAGCTCGTCCTCT 62.825 72.222 0.73 0.00 44.35 3.69
2889 4938 4.816984 TCCCCGGAGCTCGTCCTC 62.817 72.222 0.73 0.00 44.35 3.71
2890 4939 4.824515 CTCCCCGGAGCTCGTCCT 62.825 72.222 0.73 0.00 44.35 3.85
2902 4951 4.936685 ATGATATTTTAGAGGGCTCCCC 57.063 45.455 0.32 0.00 45.90 4.81
2903 4952 7.866870 AGAATATGATATTTTAGAGGGCTCCC 58.133 38.462 0.00 0.00 0.00 4.30
2904 4953 8.543774 TGAGAATATGATATTTTAGAGGGCTCC 58.456 37.037 0.00 0.00 0.00 4.70
2914 4963 9.827198 TTTGGGGCTATGAGAATATGATATTTT 57.173 29.630 0.00 0.00 0.00 1.82
2920 4969 9.827198 AAATAATTTGGGGCTATGAGAATATGA 57.173 29.630 0.00 0.00 0.00 2.15
2923 4972 9.653516 TCAAAATAATTTGGGGCTATGAGAATA 57.346 29.630 3.48 0.00 44.88 1.75
2924 4973 8.551682 TCAAAATAATTTGGGGCTATGAGAAT 57.448 30.769 3.48 0.00 44.88 2.40
2925 4974 7.969690 TCAAAATAATTTGGGGCTATGAGAA 57.030 32.000 3.48 0.00 44.88 2.87
2926 4975 7.969690 TTCAAAATAATTTGGGGCTATGAGA 57.030 32.000 3.48 0.00 44.88 3.27
2927 4976 9.617523 AATTTCAAAATAATTTGGGGCTATGAG 57.382 29.630 3.48 0.00 44.88 2.90
2928 4977 9.972106 AAATTTCAAAATAATTTGGGGCTATGA 57.028 25.926 3.48 0.00 44.88 2.15
2998 5047 9.850628 CGGATGGACGAGTATATTATTAAGAAA 57.149 33.333 0.00 0.00 35.47 2.52
2999 5048 8.464404 CCGGATGGACGAGTATATTATTAAGAA 58.536 37.037 0.00 0.00 37.49 2.52
3000 5049 7.830697 TCCGGATGGACGAGTATATTATTAAGA 59.169 37.037 0.00 0.00 40.17 2.10
3001 5050 7.993101 TCCGGATGGACGAGTATATTATTAAG 58.007 38.462 0.00 0.00 40.17 1.85
3002 5051 7.943079 TCCGGATGGACGAGTATATTATTAA 57.057 36.000 0.00 0.00 40.17 1.40
3003 5052 7.943079 TTCCGGATGGACGAGTATATTATTA 57.057 36.000 4.15 0.00 46.45 0.98
3004 5053 6.845758 TTCCGGATGGACGAGTATATTATT 57.154 37.500 4.15 0.00 46.45 1.40
3005 5054 6.845758 TTTCCGGATGGACGAGTATATTAT 57.154 37.500 4.15 0.00 46.45 1.28
3006 5055 6.845758 ATTTCCGGATGGACGAGTATATTA 57.154 37.500 4.15 0.00 46.45 0.98
3007 5056 5.740290 ATTTCCGGATGGACGAGTATATT 57.260 39.130 4.15 0.00 46.45 1.28
3008 5057 5.950549 AGTATTTCCGGATGGACGAGTATAT 59.049 40.000 4.15 0.00 46.45 0.86
3009 5058 5.319453 AGTATTTCCGGATGGACGAGTATA 58.681 41.667 4.15 0.00 46.45 1.47
3010 5059 4.150359 AGTATTTCCGGATGGACGAGTAT 58.850 43.478 4.15 0.00 46.45 2.12
3011 5060 3.559069 AGTATTTCCGGATGGACGAGTA 58.441 45.455 4.15 0.00 46.45 2.59
3012 5061 2.385803 AGTATTTCCGGATGGACGAGT 58.614 47.619 4.15 0.00 46.45 4.18
3013 5062 3.123804 CAAGTATTTCCGGATGGACGAG 58.876 50.000 4.15 0.00 46.45 4.18
3014 5063 2.498481 ACAAGTATTTCCGGATGGACGA 59.502 45.455 4.15 0.00 46.45 4.20
3015 5064 2.864343 GACAAGTATTTCCGGATGGACG 59.136 50.000 4.15 0.00 46.45 4.79
3016 5065 2.864343 CGACAAGTATTTCCGGATGGAC 59.136 50.000 4.15 3.21 46.45 4.02
3017 5066 2.761767 TCGACAAGTATTTCCGGATGGA 59.238 45.455 4.15 0.00 44.61 3.41
3018 5067 3.173668 TCGACAAGTATTTCCGGATGG 57.826 47.619 4.15 0.00 0.00 3.51
3019 5068 4.430007 TCTTCGACAAGTATTTCCGGATG 58.570 43.478 4.15 0.97 0.00 3.51
3020 5069 4.730949 TCTTCGACAAGTATTTCCGGAT 57.269 40.909 4.15 0.00 0.00 4.18
3021 5070 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
3022 5071 5.447279 CCATTTCTTCGACAAGTATTTCCGG 60.447 44.000 0.00 0.00 0.00 5.14
3023 5072 5.350365 TCCATTTCTTCGACAAGTATTTCCG 59.650 40.000 0.00 0.00 0.00 4.30
3024 5073 6.737254 TCCATTTCTTCGACAAGTATTTCC 57.263 37.500 0.00 0.00 0.00 3.13
3027 5076 9.490379 GGTATATCCATTTCTTCGACAAGTATT 57.510 33.333 0.00 0.00 35.97 1.89
3028 5077 8.871125 AGGTATATCCATTTCTTCGACAAGTAT 58.129 33.333 0.00 0.00 39.02 2.12
3029 5078 8.246430 AGGTATATCCATTTCTTCGACAAGTA 57.754 34.615 0.00 0.00 39.02 2.24
3030 5079 7.125792 AGGTATATCCATTTCTTCGACAAGT 57.874 36.000 0.00 0.00 39.02 3.16
3031 5080 8.577296 TCTAGGTATATCCATTTCTTCGACAAG 58.423 37.037 0.00 0.00 39.02 3.16
3032 5081 8.473358 TCTAGGTATATCCATTTCTTCGACAA 57.527 34.615 0.00 0.00 39.02 3.18
3033 5082 8.523658 CATCTAGGTATATCCATTTCTTCGACA 58.476 37.037 0.00 0.00 39.02 4.35
3034 5083 8.524487 ACATCTAGGTATATCCATTTCTTCGAC 58.476 37.037 0.00 0.00 39.02 4.20
3035 5084 8.651589 ACATCTAGGTATATCCATTTCTTCGA 57.348 34.615 0.00 0.00 39.02 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.