Multiple sequence alignment - TraesCS2D01G191300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G191300 chr2D 100.000 5082 0 0 1 5082 135386759 135381678 0.000000e+00 9385.0
1 TraesCS2D01G191300 chr2D 91.566 249 21 0 413 661 126046528 126046776 1.350000e-90 344.0
2 TraesCS2D01G191300 chr2D 91.736 242 20 0 416 657 155616774 155616533 2.270000e-88 337.0
3 TraesCS2D01G191300 chr2D 79.079 239 24 8 3338 3575 564597525 564597738 1.910000e-29 141.0
4 TraesCS2D01G191300 chr2B 88.502 2357 155 54 2331 4631 192441268 192438972 0.000000e+00 2745.0
5 TraesCS2D01G191300 chr2B 91.652 1665 80 20 677 2312 192443010 192441376 0.000000e+00 2250.0
6 TraesCS2D01G191300 chr2B 88.973 789 59 12 4310 5082 192438819 192438043 0.000000e+00 950.0
7 TraesCS2D01G191300 chr2B 86.429 420 29 9 1 420 192443414 192443023 7.810000e-118 435.0
8 TraesCS2D01G191300 chr2A 93.932 1714 76 15 2329 4036 143245521 143243830 0.000000e+00 2564.0
9 TraesCS2D01G191300 chr2A 90.230 870 53 11 1456 2312 143246477 143245627 0.000000e+00 1107.0
10 TraesCS2D01G191300 chr2A 91.421 746 18 10 658 1393 143247187 143246478 0.000000e+00 981.0
11 TraesCS2D01G191300 chr2A 85.984 899 85 14 1436 2312 442486359 442485480 0.000000e+00 924.0
12 TraesCS2D01G191300 chr2A 93.506 462 22 6 4625 5082 143242633 143242176 0.000000e+00 680.0
13 TraesCS2D01G191300 chr2A 85.685 489 61 7 4149 4631 143243830 143243345 1.630000e-139 507.0
14 TraesCS2D01G191300 chr2A 87.077 325 32 5 2674 2994 642967700 642968018 4.840000e-95 359.0
15 TraesCS2D01G191300 chr2A 91.770 243 20 0 415 657 722380565 722380323 6.300000e-89 339.0
16 TraesCS2D01G191300 chr2A 84.783 184 26 2 235 418 763861027 763861208 3.130000e-42 183.0
17 TraesCS2D01G191300 chr6A 86.986 899 76 14 1436 2312 553943903 553944782 0.000000e+00 974.0
18 TraesCS2D01G191300 chr5A 86.161 896 86 16 1436 2312 313407421 313406545 0.000000e+00 933.0
19 TraesCS2D01G191300 chr5A 88.580 324 28 5 2674 2994 237952099 237951782 7.980000e-103 385.0
20 TraesCS2D01G191300 chr1A 86.031 902 87 17 1431 2312 582041913 582041031 0.000000e+00 931.0
21 TraesCS2D01G191300 chr1A 90.551 254 22 2 416 668 579953984 579954236 8.150000e-88 335.0
22 TraesCS2D01G191300 chr4A 85.873 899 86 14 1436 2312 6540710 6539831 0.000000e+00 918.0
23 TraesCS2D01G191300 chr4A 85.396 897 91 16 1436 2312 39383499 39384375 0.000000e+00 894.0
24 TraesCS2D01G191300 chr4A 91.701 241 20 0 416 656 595547025 595547265 8.150000e-88 335.0
25 TraesCS2D01G191300 chr3A 85.539 899 89 16 1436 2312 290371828 290370949 0.000000e+00 902.0
26 TraesCS2D01G191300 chr3A 85.095 899 92 18 1436 2312 349283953 349284831 0.000000e+00 880.0
27 TraesCS2D01G191300 chr3A 85.249 522 62 9 2837 3351 352458594 352459107 1.620000e-144 523.0
28 TraesCS2D01G191300 chr3A 82.576 132 19 4 204 333 685772552 685772423 4.160000e-21 113.0
29 TraesCS2D01G191300 chr4B 82.258 682 79 16 2837 3502 430378343 430378998 7.440000e-153 551.0
30 TraesCS2D01G191300 chr4B 86.957 322 31 7 2674 2994 259785165 259784854 8.100000e-93 351.0
31 TraesCS2D01G191300 chr7A 82.261 637 73 19 2948 3575 342811544 342812149 9.760000e-142 514.0
32 TraesCS2D01G191300 chr7A 82.075 636 75 15 2948 3575 315304885 315304281 1.630000e-139 507.0
33 TraesCS2D01G191300 chr7A 91.701 241 20 0 416 656 191997675 191997435 8.150000e-88 335.0
34 TraesCS2D01G191300 chr3B 80.534 637 84 15 2948 3575 624949208 624949813 2.160000e-123 453.0
35 TraesCS2D01G191300 chr1D 84.977 426 50 5 2948 3367 209975254 209975671 2.190000e-113 420.0
36 TraesCS2D01G191300 chr1D 90.763 249 22 1 408 656 227919512 227919759 1.050000e-86 331.0
37 TraesCS2D01G191300 chr7B 84.045 445 56 7 2948 3383 680755616 680756054 1.020000e-111 414.0
38 TraesCS2D01G191300 chr7D 83.452 423 52 7 1 417 463273917 463273507 1.340000e-100 377.0
39 TraesCS2D01G191300 chr7D 91.379 58 3 2 881 937 633375791 633375735 1.520000e-10 78.7
40 TraesCS2D01G191300 chr4D 92.116 241 19 0 416 656 488451249 488451489 1.750000e-89 340.0
41 TraesCS2D01G191300 chr4D 91.020 245 22 0 414 658 349216949 349216705 1.050000e-86 331.0
42 TraesCS2D01G191300 chr4D 83.333 132 18 4 204 333 503694248 503694377 8.940000e-23 119.0
43 TraesCS2D01G191300 chr3D 83.556 225 35 2 193 417 590383724 590383946 5.160000e-50 209.0
44 TraesCS2D01G191300 chr5B 84.091 132 17 4 204 333 571478465 571478336 1.920000e-24 124.0
45 TraesCS2D01G191300 chr6B 80.741 135 22 4 201 333 125419287 125419419 9.000000e-18 102.0
46 TraesCS2D01G191300 chr5D 80.451 133 21 5 204 333 84898310 84898180 4.190000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G191300 chr2D 135381678 135386759 5081 True 9385.0 9385 100.0000 1 5082 1 chr2D.!!$R1 5081
1 TraesCS2D01G191300 chr2B 192438043 192443414 5371 True 1595.0 2745 88.8890 1 5082 4 chr2B.!!$R1 5081
2 TraesCS2D01G191300 chr2A 143242176 143247187 5011 True 1167.8 2564 90.9548 658 5082 5 chr2A.!!$R3 4424
3 TraesCS2D01G191300 chr2A 442485480 442486359 879 True 924.0 924 85.9840 1436 2312 1 chr2A.!!$R1 876
4 TraesCS2D01G191300 chr6A 553943903 553944782 879 False 974.0 974 86.9860 1436 2312 1 chr6A.!!$F1 876
5 TraesCS2D01G191300 chr5A 313406545 313407421 876 True 933.0 933 86.1610 1436 2312 1 chr5A.!!$R2 876
6 TraesCS2D01G191300 chr1A 582041031 582041913 882 True 931.0 931 86.0310 1431 2312 1 chr1A.!!$R1 881
7 TraesCS2D01G191300 chr4A 6539831 6540710 879 True 918.0 918 85.8730 1436 2312 1 chr4A.!!$R1 876
8 TraesCS2D01G191300 chr4A 39383499 39384375 876 False 894.0 894 85.3960 1436 2312 1 chr4A.!!$F1 876
9 TraesCS2D01G191300 chr3A 290370949 290371828 879 True 902.0 902 85.5390 1436 2312 1 chr3A.!!$R1 876
10 TraesCS2D01G191300 chr3A 349283953 349284831 878 False 880.0 880 85.0950 1436 2312 1 chr3A.!!$F1 876
11 TraesCS2D01G191300 chr3A 352458594 352459107 513 False 523.0 523 85.2490 2837 3351 1 chr3A.!!$F2 514
12 TraesCS2D01G191300 chr4B 430378343 430378998 655 False 551.0 551 82.2580 2837 3502 1 chr4B.!!$F1 665
13 TraesCS2D01G191300 chr7A 342811544 342812149 605 False 514.0 514 82.2610 2948 3575 1 chr7A.!!$F1 627
14 TraesCS2D01G191300 chr7A 315304281 315304885 604 True 507.0 507 82.0750 2948 3575 1 chr7A.!!$R2 627
15 TraesCS2D01G191300 chr3B 624949208 624949813 605 False 453.0 453 80.5340 2948 3575 1 chr3B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.321122 GAATAGGGATCCTGCGGCTG 60.321 60.0 12.58 0.0 34.61 4.85 F
1427 1440 0.673644 ATTGCTTCGTGAAGTCCGGG 60.674 55.0 0.00 0.0 40.45 5.73 F
2404 2538 0.036164 ACTTGGGCTTACGTGCATGA 59.964 50.0 14.17 0.0 34.04 3.07 F
2466 2600 0.165944 CCTGTTTGGTCATTCGTCGC 59.834 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1628 1.060713 CAATCTCGCAACGAACGACT 58.939 50.000 0.14 0.0 34.74 4.18 R
3272 3438 1.133025 CCGCTGCGAGGAAATTGAATT 59.867 47.619 25.45 0.0 0.00 2.17 R
3630 3800 0.165944 GGAATGTTTCGACAGCACGG 59.834 55.000 0.00 0.0 0.00 4.94 R
4302 4503 0.179189 GCCACTCATTTTCGAAGCCG 60.179 55.000 0.00 0.0 37.07 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.940739 CAATAATACGAGATGAGAGGGGAAT 58.059 40.000 0.00 0.00 0.00 3.01
73 74 1.177256 CCTTTGCAGCAGAGGCAGTT 61.177 55.000 18.71 0.00 43.05 3.16
102 103 3.560481 GGAGTAATGACGATGAGAGACGA 59.440 47.826 0.00 0.00 0.00 4.20
103 104 4.035324 GGAGTAATGACGATGAGAGACGAA 59.965 45.833 0.00 0.00 0.00 3.85
107 108 5.759506 AATGACGATGAGAGACGAACTAT 57.240 39.130 0.00 0.00 0.00 2.12
133 134 2.627699 TGCAAACTCTTTGGGATTCCAC 59.372 45.455 4.80 0.00 43.94 4.02
139 140 1.165270 CTTTGGGATTCCACCGTGTC 58.835 55.000 4.80 0.00 43.94 3.67
144 145 1.590147 GATTCCACCGTGTCGAGGT 59.410 57.895 0.00 0.00 43.97 3.85
150 151 1.068474 CACCGTGTCGAGGTTGAATC 58.932 55.000 0.00 0.00 40.59 2.52
158 159 3.246619 GTCGAGGTTGAATCTGACTCAC 58.753 50.000 0.00 0.00 0.00 3.51
176 177 6.655003 TGACTCACAGAAAGTTATCCATTTCC 59.345 38.462 0.00 0.00 36.31 3.13
177 178 5.643777 ACTCACAGAAAGTTATCCATTTCCG 59.356 40.000 0.00 0.00 36.31 4.30
178 179 5.556915 TCACAGAAAGTTATCCATTTCCGT 58.443 37.500 0.00 0.00 36.31 4.69
179 180 6.703319 TCACAGAAAGTTATCCATTTCCGTA 58.297 36.000 0.00 0.00 36.31 4.02
180 181 6.592607 TCACAGAAAGTTATCCATTTCCGTAC 59.407 38.462 0.00 0.00 36.31 3.67
181 182 6.370442 CACAGAAAGTTATCCATTTCCGTACA 59.630 38.462 0.00 0.00 36.31 2.90
185 186 7.664318 AGAAAGTTATCCATTTCCGTACAAAGT 59.336 33.333 0.00 0.00 36.31 2.66
186 187 8.851541 AAAGTTATCCATTTCCGTACAAAGTA 57.148 30.769 0.00 0.00 0.00 2.24
187 188 8.488651 AAGTTATCCATTTCCGTACAAAGTAG 57.511 34.615 0.00 0.00 0.00 2.57
188 189 7.844009 AGTTATCCATTTCCGTACAAAGTAGA 58.156 34.615 0.00 0.00 0.00 2.59
189 190 8.316214 AGTTATCCATTTCCGTACAAAGTAGAA 58.684 33.333 0.00 0.00 0.00 2.10
190 191 9.106070 GTTATCCATTTCCGTACAAAGTAGAAT 57.894 33.333 0.00 0.00 0.00 2.40
192 193 8.888579 ATCCATTTCCGTACAAAGTAGAATAG 57.111 34.615 0.00 0.00 0.00 1.73
193 194 7.270047 TCCATTTCCGTACAAAGTAGAATAGG 58.730 38.462 0.00 0.00 0.00 2.57
194 195 6.482308 CCATTTCCGTACAAAGTAGAATAGGG 59.518 42.308 0.00 0.00 0.00 3.53
195 196 6.855763 TTTCCGTACAAAGTAGAATAGGGA 57.144 37.500 0.00 0.00 31.46 4.20
196 197 7.427989 TTTCCGTACAAAGTAGAATAGGGAT 57.572 36.000 0.00 0.00 33.01 3.85
197 198 6.645790 TCCGTACAAAGTAGAATAGGGATC 57.354 41.667 0.00 0.00 29.02 3.36
198 199 5.537674 TCCGTACAAAGTAGAATAGGGATCC 59.462 44.000 1.92 1.92 29.02 3.36
199 200 5.539193 CCGTACAAAGTAGAATAGGGATCCT 59.461 44.000 12.58 0.00 37.71 3.24
200 201 6.448006 CGTACAAAGTAGAATAGGGATCCTG 58.552 44.000 12.58 0.00 34.61 3.86
201 202 5.297569 ACAAAGTAGAATAGGGATCCTGC 57.702 43.478 12.58 0.00 34.61 4.85
202 203 4.202264 ACAAAGTAGAATAGGGATCCTGCG 60.202 45.833 12.58 0.00 34.61 5.18
203 204 2.530701 AGTAGAATAGGGATCCTGCGG 58.469 52.381 12.58 0.00 34.61 5.69
204 205 1.066787 GTAGAATAGGGATCCTGCGGC 60.067 57.143 12.58 0.00 34.61 6.53
205 206 0.472734 AGAATAGGGATCCTGCGGCT 60.473 55.000 12.58 1.92 34.61 5.52
206 207 0.321122 GAATAGGGATCCTGCGGCTG 60.321 60.000 12.58 0.00 34.61 4.85
207 208 2.403132 AATAGGGATCCTGCGGCTGC 62.403 60.000 11.65 11.65 43.20 5.25
280 281 8.876275 ATTATATGCATTGTTTTCGATTTGCT 57.124 26.923 3.54 0.00 0.00 3.91
291 292 4.355543 TTCGATTTGCTAATCAAGTGGC 57.644 40.909 18.75 0.00 40.17 5.01
321 322 9.100554 TGCGCTAGCTAATTATAGTTTTTGTAA 57.899 29.630 13.93 0.00 45.42 2.41
362 363 2.408271 TGATGAGCCACCAGATTGTC 57.592 50.000 0.00 0.00 0.00 3.18
390 391 5.685954 TGAATTCGCTCGTAGACAATGTATC 59.314 40.000 0.04 0.00 0.00 2.24
392 393 2.946990 TCGCTCGTAGACAATGTATCCA 59.053 45.455 0.00 0.00 0.00 3.41
393 394 3.568430 TCGCTCGTAGACAATGTATCCAT 59.432 43.478 0.00 0.00 0.00 3.41
421 422 8.732746 TTTCATCTTGTAATAAAGCTACTCCC 57.267 34.615 0.00 0.00 0.00 4.30
422 423 7.676683 TCATCTTGTAATAAAGCTACTCCCT 57.323 36.000 0.00 0.00 0.00 4.20
423 424 7.727181 TCATCTTGTAATAAAGCTACTCCCTC 58.273 38.462 0.00 0.00 0.00 4.30
424 425 6.481434 TCTTGTAATAAAGCTACTCCCTCC 57.519 41.667 0.00 0.00 0.00 4.30
425 426 6.203072 TCTTGTAATAAAGCTACTCCCTCCT 58.797 40.000 0.00 0.00 0.00 3.69
426 427 6.672657 TCTTGTAATAAAGCTACTCCCTCCTT 59.327 38.462 0.00 0.00 0.00 3.36
428 429 5.365895 TGTAATAAAGCTACTCCCTCCTTCC 59.634 44.000 0.00 0.00 0.00 3.46
429 430 2.344093 AAAGCTACTCCCTCCTTCCA 57.656 50.000 0.00 0.00 0.00 3.53
432 433 1.578215 AGCTACTCCCTCCTTCCATCT 59.422 52.381 0.00 0.00 0.00 2.90
433 434 2.792370 AGCTACTCCCTCCTTCCATCTA 59.208 50.000 0.00 0.00 0.00 1.98
434 435 3.404425 AGCTACTCCCTCCTTCCATCTAT 59.596 47.826 0.00 0.00 0.00 1.98
435 436 4.608473 AGCTACTCCCTCCTTCCATCTATA 59.392 45.833 0.00 0.00 0.00 1.31
436 437 5.257577 AGCTACTCCCTCCTTCCATCTATAT 59.742 44.000 0.00 0.00 0.00 0.86
437 438 6.452000 AGCTACTCCCTCCTTCCATCTATATA 59.548 42.308 0.00 0.00 0.00 0.86
438 439 7.035764 AGCTACTCCCTCCTTCCATCTATATAA 60.036 40.741 0.00 0.00 0.00 0.98
439 440 7.620094 GCTACTCCCTCCTTCCATCTATATAAA 59.380 40.741 0.00 0.00 0.00 1.40
440 441 9.722317 CTACTCCCTCCTTCCATCTATATAAAT 57.278 37.037 0.00 0.00 0.00 1.40
441 442 8.616799 ACTCCCTCCTTCCATCTATATAAATC 57.383 38.462 0.00 0.00 0.00 2.17
442 443 7.625682 ACTCCCTCCTTCCATCTATATAAATCC 59.374 40.741 0.00 0.00 0.00 3.01
443 444 7.733349 TCCCTCCTTCCATCTATATAAATCCT 58.267 38.462 0.00 0.00 0.00 3.24
444 445 8.867246 TCCCTCCTTCCATCTATATAAATCCTA 58.133 37.037 0.00 0.00 0.00 2.94
445 446 9.507381 CCCTCCTTCCATCTATATAAATCCTAA 57.493 37.037 0.00 0.00 0.00 2.69
449 450 9.265901 CCTTCCATCTATATAAATCCTAATGCG 57.734 37.037 0.00 0.00 0.00 4.73
450 451 9.823647 CTTCCATCTATATAAATCCTAATGCGT 57.176 33.333 0.00 0.00 0.00 5.24
460 461 8.911247 ATAAATCCTAATGCGTTTTTCAAGAC 57.089 30.769 0.00 0.00 0.00 3.01
461 462 4.759516 TCCTAATGCGTTTTTCAAGACC 57.240 40.909 0.00 0.00 0.00 3.85
462 463 3.187637 TCCTAATGCGTTTTTCAAGACCG 59.812 43.478 0.00 0.00 0.00 4.79
463 464 3.058501 CCTAATGCGTTTTTCAAGACCGT 60.059 43.478 0.00 0.00 0.00 4.83
464 465 2.681152 ATGCGTTTTTCAAGACCGTC 57.319 45.000 0.00 0.00 0.00 4.79
465 466 1.658994 TGCGTTTTTCAAGACCGTCT 58.341 45.000 0.00 0.00 0.00 4.18
466 467 2.011222 TGCGTTTTTCAAGACCGTCTT 58.989 42.857 8.03 8.03 37.14 3.01
467 468 2.420722 TGCGTTTTTCAAGACCGTCTTT 59.579 40.909 11.24 0.00 33.78 2.52
468 469 2.781646 GCGTTTTTCAAGACCGTCTTTG 59.218 45.455 11.24 7.54 33.78 2.77
469 470 3.486209 GCGTTTTTCAAGACCGTCTTTGA 60.486 43.478 11.24 9.58 33.78 2.69
470 471 4.026407 CGTTTTTCAAGACCGTCTTTGAC 58.974 43.478 11.24 5.42 33.78 3.18
471 472 4.201783 CGTTTTTCAAGACCGTCTTTGACT 60.202 41.667 11.24 0.00 33.78 3.41
472 473 5.005971 CGTTTTTCAAGACCGTCTTTGACTA 59.994 40.000 11.24 2.17 33.78 2.59
473 474 6.292703 CGTTTTTCAAGACCGTCTTTGACTAT 60.293 38.462 11.24 0.00 33.78 2.12
474 475 7.415229 GTTTTTCAAGACCGTCTTTGACTATT 58.585 34.615 11.24 0.00 33.78 1.73
475 476 6.539649 TTTCAAGACCGTCTTTGACTATTG 57.460 37.500 11.24 0.00 33.78 1.90
476 477 5.462530 TCAAGACCGTCTTTGACTATTGA 57.537 39.130 11.24 1.39 33.78 2.57
477 478 6.037786 TCAAGACCGTCTTTGACTATTGAT 57.962 37.500 11.24 0.00 33.78 2.57
478 479 7.165460 TCAAGACCGTCTTTGACTATTGATA 57.835 36.000 11.24 0.00 33.78 2.15
479 480 7.608153 TCAAGACCGTCTTTGACTATTGATAA 58.392 34.615 11.24 0.00 33.78 1.75
480 481 7.759886 TCAAGACCGTCTTTGACTATTGATAAG 59.240 37.037 11.24 0.00 33.78 1.73
481 482 7.406031 AGACCGTCTTTGACTATTGATAAGA 57.594 36.000 0.00 0.00 0.00 2.10
482 483 8.012957 AGACCGTCTTTGACTATTGATAAGAT 57.987 34.615 0.00 0.00 0.00 2.40
483 484 8.478877 AGACCGTCTTTGACTATTGATAAGATT 58.521 33.333 0.00 0.00 0.00 2.40
484 485 9.745880 GACCGTCTTTGACTATTGATAAGATTA 57.254 33.333 0.00 0.00 0.00 1.75
542 543 7.072177 TCATTAAAAGCTCCTTTCACATACG 57.928 36.000 0.00 0.00 31.99 3.06
543 544 6.876789 TCATTAAAAGCTCCTTTCACATACGA 59.123 34.615 0.00 0.00 31.99 3.43
544 545 7.389330 TCATTAAAAGCTCCTTTCACATACGAA 59.611 33.333 0.00 0.00 31.99 3.85
545 546 7.681939 TTAAAAGCTCCTTTCACATACGAAT 57.318 32.000 0.00 0.00 31.99 3.34
546 547 6.575162 AAAAGCTCCTTTCACATACGAATT 57.425 33.333 0.00 0.00 31.99 2.17
547 548 6.575162 AAAGCTCCTTTCACATACGAATTT 57.425 33.333 0.00 0.00 0.00 1.82
548 549 5.551760 AGCTCCTTTCACATACGAATTTG 57.448 39.130 0.00 0.00 0.00 2.32
549 550 5.245531 AGCTCCTTTCACATACGAATTTGA 58.754 37.500 0.00 0.00 0.00 2.69
550 551 5.122396 AGCTCCTTTCACATACGAATTTGAC 59.878 40.000 0.00 0.00 0.00 3.18
551 552 5.524511 TCCTTTCACATACGAATTTGACG 57.475 39.130 0.00 0.00 0.00 4.35
552 553 4.390603 TCCTTTCACATACGAATTTGACGG 59.609 41.667 0.00 0.00 34.93 4.79
553 554 4.153475 CCTTTCACATACGAATTTGACGGT 59.847 41.667 0.00 0.00 34.93 4.83
554 555 5.349270 CCTTTCACATACGAATTTGACGGTA 59.651 40.000 0.00 0.00 34.93 4.02
555 556 6.036735 CCTTTCACATACGAATTTGACGGTAT 59.963 38.462 0.00 0.00 34.93 2.73
556 557 5.959652 TCACATACGAATTTGACGGTATG 57.040 39.130 0.00 8.12 34.47 2.39
557 558 4.269123 TCACATACGAATTTGACGGTATGC 59.731 41.667 0.00 0.00 33.15 3.14
558 559 4.270084 CACATACGAATTTGACGGTATGCT 59.730 41.667 0.00 0.00 33.15 3.79
559 560 4.873827 ACATACGAATTTGACGGTATGCTT 59.126 37.500 0.00 0.00 33.15 3.91
560 561 5.353123 ACATACGAATTTGACGGTATGCTTT 59.647 36.000 0.00 0.00 33.15 3.51
561 562 4.078363 ACGAATTTGACGGTATGCTTTG 57.922 40.909 0.00 0.00 34.93 2.77
562 563 3.500680 ACGAATTTGACGGTATGCTTTGT 59.499 39.130 0.00 0.00 34.93 2.83
563 564 3.845775 CGAATTTGACGGTATGCTTTGTG 59.154 43.478 0.00 0.00 0.00 3.33
564 565 4.612712 CGAATTTGACGGTATGCTTTGTGT 60.613 41.667 0.00 0.00 0.00 3.72
565 566 5.390040 CGAATTTGACGGTATGCTTTGTGTA 60.390 40.000 0.00 0.00 0.00 2.90
566 567 5.950758 ATTTGACGGTATGCTTTGTGTAA 57.049 34.783 0.00 0.00 0.00 2.41
567 568 4.735662 TTGACGGTATGCTTTGTGTAAC 57.264 40.909 0.00 0.00 37.35 2.50
568 569 3.997762 TGACGGTATGCTTTGTGTAACT 58.002 40.909 0.00 0.00 38.04 2.24
569 570 4.382291 TGACGGTATGCTTTGTGTAACTT 58.618 39.130 0.00 0.00 38.04 2.66
570 571 4.212425 TGACGGTATGCTTTGTGTAACTTG 59.788 41.667 0.00 0.00 38.04 3.16
571 572 3.058501 ACGGTATGCTTTGTGTAACTTGC 60.059 43.478 0.00 0.00 38.04 4.01
572 573 3.058570 CGGTATGCTTTGTGTAACTTGCA 60.059 43.478 0.00 0.00 39.97 4.08
573 574 4.379394 CGGTATGCTTTGTGTAACTTGCAT 60.379 41.667 0.00 0.00 44.54 3.96
574 575 4.858692 GGTATGCTTTGTGTAACTTGCATG 59.141 41.667 8.29 0.00 43.24 4.06
575 576 4.589216 ATGCTTTGTGTAACTTGCATGT 57.411 36.364 0.00 0.00 42.42 3.21
576 577 3.963665 TGCTTTGTGTAACTTGCATGTC 58.036 40.909 5.61 0.00 38.04 3.06
577 578 3.379688 TGCTTTGTGTAACTTGCATGTCA 59.620 39.130 5.61 0.00 38.04 3.58
578 579 4.037803 TGCTTTGTGTAACTTGCATGTCAT 59.962 37.500 5.61 0.00 38.04 3.06
579 580 5.240403 TGCTTTGTGTAACTTGCATGTCATA 59.760 36.000 5.61 0.00 38.04 2.15
580 581 6.072008 TGCTTTGTGTAACTTGCATGTCATAT 60.072 34.615 5.61 0.00 38.04 1.78
581 582 7.120432 TGCTTTGTGTAACTTGCATGTCATATA 59.880 33.333 5.61 0.00 38.04 0.86
582 583 7.641411 GCTTTGTGTAACTTGCATGTCATATAG 59.359 37.037 5.61 5.33 38.04 1.31
583 584 8.560355 TTTGTGTAACTTGCATGTCATATAGT 57.440 30.769 5.61 0.00 38.04 2.12
584 585 9.660180 TTTGTGTAACTTGCATGTCATATAGTA 57.340 29.630 5.61 0.00 38.04 1.82
585 586 9.830975 TTGTGTAACTTGCATGTCATATAGTAT 57.169 29.630 5.61 0.00 38.04 2.12
586 587 9.830975 TGTGTAACTTGCATGTCATATAGTATT 57.169 29.630 5.61 0.00 38.04 1.89
588 589 8.773645 TGTAACTTGCATGTCATATAGTATTGC 58.226 33.333 5.61 0.00 0.00 3.56
589 590 8.993121 GTAACTTGCATGTCATATAGTATTGCT 58.007 33.333 5.61 0.00 0.00 3.91
590 591 7.664082 ACTTGCATGTCATATAGTATTGCTC 57.336 36.000 0.00 0.00 0.00 4.26
591 592 7.448420 ACTTGCATGTCATATAGTATTGCTCT 58.552 34.615 0.00 0.00 0.00 4.09
592 593 8.588472 ACTTGCATGTCATATAGTATTGCTCTA 58.412 33.333 0.00 0.00 0.00 2.43
593 594 9.428097 CTTGCATGTCATATAGTATTGCTCTAA 57.572 33.333 0.00 0.00 0.00 2.10
594 595 9.777297 TTGCATGTCATATAGTATTGCTCTAAA 57.223 29.630 0.00 0.00 0.00 1.85
595 596 9.777297 TGCATGTCATATAGTATTGCTCTAAAA 57.223 29.630 0.00 0.00 0.00 1.52
612 613 9.691362 TGCTCTAAAATTTGGTCAAAATTAGTC 57.309 29.630 19.77 15.99 45.73 2.59
613 614 9.914131 GCTCTAAAATTTGGTCAAAATTAGTCT 57.086 29.630 19.77 3.58 45.73 3.24
642 643 8.682936 AAAACTCATTAGGCCTTGTATAGATG 57.317 34.615 12.58 4.78 0.00 2.90
643 644 6.365970 ACTCATTAGGCCTTGTATAGATGG 57.634 41.667 12.58 0.00 0.00 3.51
644 645 6.084738 ACTCATTAGGCCTTGTATAGATGGA 58.915 40.000 12.58 0.00 0.00 3.41
645 646 6.212388 ACTCATTAGGCCTTGTATAGATGGAG 59.788 42.308 12.58 7.60 0.00 3.86
646 647 5.485353 TCATTAGGCCTTGTATAGATGGAGG 59.515 44.000 12.58 0.00 0.00 4.30
647 648 2.625639 AGGCCTTGTATAGATGGAGGG 58.374 52.381 0.00 0.00 0.00 4.30
648 649 2.182312 AGGCCTTGTATAGATGGAGGGA 59.818 50.000 0.00 0.00 0.00 4.20
649 650 2.569404 GGCCTTGTATAGATGGAGGGAG 59.431 54.545 6.03 0.00 0.00 4.30
650 651 2.569404 GCCTTGTATAGATGGAGGGAGG 59.431 54.545 6.03 0.00 0.00 4.30
651 652 3.177228 CCTTGTATAGATGGAGGGAGGG 58.823 54.545 0.00 0.00 0.00 4.30
652 653 3.181406 CCTTGTATAGATGGAGGGAGGGA 60.181 52.174 0.00 0.00 0.00 4.20
653 654 3.835478 TGTATAGATGGAGGGAGGGAG 57.165 52.381 0.00 0.00 0.00 4.30
654 655 3.072086 TGTATAGATGGAGGGAGGGAGT 58.928 50.000 0.00 0.00 0.00 3.85
655 656 4.257078 TGTATAGATGGAGGGAGGGAGTA 58.743 47.826 0.00 0.00 0.00 2.59
656 657 4.292571 TGTATAGATGGAGGGAGGGAGTAG 59.707 50.000 0.00 0.00 0.00 2.57
665 666 0.689623 GGAGGGAGTAGCCATGATGG 59.310 60.000 7.21 7.21 41.55 3.51
782 784 9.548208 GTTCAAACTAGCATTCTTAATCTTGTC 57.452 33.333 0.00 0.00 0.00 3.18
1172 1185 2.434359 GTTCCTCCAGTTCGCCGG 60.434 66.667 0.00 0.00 0.00 6.13
1402 1415 1.740296 AGTCGGGTTGATTTCGGCG 60.740 57.895 0.00 0.00 33.41 6.46
1427 1440 0.673644 ATTGCTTCGTGAAGTCCGGG 60.674 55.000 0.00 0.00 40.45 5.73
1445 1458 3.120105 CGCTGCACCTCGATCCTA 58.880 61.111 0.00 0.00 0.00 2.94
1563 1577 1.862147 CGACCGCAAGAGTACGTCG 60.862 63.158 0.00 3.44 43.02 5.12
1592 1621 2.203224 TCTCTCCTCCTAGCGCGG 60.203 66.667 8.83 0.00 0.00 6.46
1599 1628 1.437573 CTCCTAGCGCGGTTCATGA 59.562 57.895 19.09 7.34 0.00 3.07
1720 1749 5.063944 CGTAGGAGATTGAGATGGTTGTTTG 59.936 44.000 0.00 0.00 0.00 2.93
1721 1750 5.246981 AGGAGATTGAGATGGTTGTTTGA 57.753 39.130 0.00 0.00 0.00 2.69
1722 1751 5.824421 AGGAGATTGAGATGGTTGTTTGAT 58.176 37.500 0.00 0.00 0.00 2.57
1723 1752 6.251471 AGGAGATTGAGATGGTTGTTTGATT 58.749 36.000 0.00 0.00 0.00 2.57
1724 1753 6.152323 AGGAGATTGAGATGGTTGTTTGATTG 59.848 38.462 0.00 0.00 0.00 2.67
1725 1754 5.717119 AGATTGAGATGGTTGTTTGATTGC 58.283 37.500 0.00 0.00 0.00 3.56
1726 1755 5.479375 AGATTGAGATGGTTGTTTGATTGCT 59.521 36.000 0.00 0.00 0.00 3.91
1727 1756 5.534207 TTGAGATGGTTGTTTGATTGCTT 57.466 34.783 0.00 0.00 0.00 3.91
1795 1831 6.662414 TGAATTCTGCTCCGTATTTTACAG 57.338 37.500 7.05 0.00 0.00 2.74
1799 1835 2.858344 CTGCTCCGTATTTTACAGTCCG 59.142 50.000 0.00 0.00 0.00 4.79
1807 1843 4.632688 CGTATTTTACAGTCCGATGGGTTT 59.367 41.667 0.00 0.00 33.83 3.27
1813 1849 2.028385 ACAGTCCGATGGGTTTACTGTC 60.028 50.000 12.26 0.00 42.23 3.51
1814 1850 2.028476 CAGTCCGATGGGTTTACTGTCA 60.028 50.000 6.06 0.00 33.27 3.58
1821 1857 5.106830 CCGATGGGTTTACTGTCAAAGTTAC 60.107 44.000 0.00 0.00 40.56 2.50
1868 1904 2.368655 GCCCAAATTCAGCGATGTTT 57.631 45.000 0.00 0.00 0.00 2.83
1872 1908 4.057432 CCCAAATTCAGCGATGTTTTGTT 58.943 39.130 21.30 2.86 0.00 2.83
1883 1919 4.429108 CGATGTTTTGTTTCAGGGTTTGT 58.571 39.130 0.00 0.00 0.00 2.83
1891 1927 7.463961 TTTGTTTCAGGGTTTGTTTAGTGTA 57.536 32.000 0.00 0.00 0.00 2.90
1903 1939 7.808856 GGTTTGTTTAGTGTAAATTATTCGCCA 59.191 33.333 0.00 0.00 0.00 5.69
1904 1940 8.846607 GTTTGTTTAGTGTAAATTATTCGCCAG 58.153 33.333 0.00 0.00 0.00 4.85
1913 1949 6.995686 TGTAAATTATTCGCCAGTGGTATGAT 59.004 34.615 11.74 3.11 0.00 2.45
1914 1950 6.560253 AAATTATTCGCCAGTGGTATGATC 57.440 37.500 11.74 0.00 0.00 2.92
1915 1951 4.681074 TTATTCGCCAGTGGTATGATCA 57.319 40.909 11.74 0.00 0.00 2.92
1916 1952 3.777106 ATTCGCCAGTGGTATGATCAT 57.223 42.857 13.81 13.81 0.00 2.45
1917 1953 2.531522 TCGCCAGTGGTATGATCATG 57.468 50.000 18.72 1.42 0.00 3.07
1918 1954 2.038659 TCGCCAGTGGTATGATCATGA 58.961 47.619 18.72 0.00 0.00 3.07
1924 1960 3.992427 CAGTGGTATGATCATGATGTCGG 59.008 47.826 18.72 2.69 0.00 4.79
1930 1966 3.749665 TGATCATGATGTCGGTGCATA 57.250 42.857 14.30 0.00 0.00 3.14
1933 1969 4.880696 TGATCATGATGTCGGTGCATAAAA 59.119 37.500 14.30 0.00 0.00 1.52
1935 1971 4.260985 TCATGATGTCGGTGCATAAAAGT 58.739 39.130 0.00 0.00 0.00 2.66
1954 1990 9.945904 ATAAAAGTTTTTGGTCCACTGTTTAAA 57.054 25.926 6.10 0.00 0.00 1.52
1982 2018 6.138761 GGCAAACTATTCTTCTATGATTGCG 58.861 40.000 0.00 0.00 40.99 4.85
1984 2020 7.042051 GGCAAACTATTCTTCTATGATTGCGTA 60.042 37.037 0.00 0.00 40.99 4.42
1993 2029 5.134202 TCTATGATTGCGTATGTGTAGGG 57.866 43.478 0.00 0.00 0.00 3.53
1998 2034 4.160814 TGATTGCGTATGTGTAGGGTTACT 59.839 41.667 0.00 0.00 0.00 2.24
2032 2069 8.752766 ATTTCTAATGTTTCATGTTTGCAGAG 57.247 30.769 0.00 0.00 0.00 3.35
2048 2085 6.882610 TTGCAGAGACATGTGTAGAAAATT 57.117 33.333 1.15 0.00 0.00 1.82
2057 2094 6.772078 ACATGTGTAGAAAATTAACTAGCGC 58.228 36.000 0.00 0.00 0.00 5.92
2107 2152 3.704566 AGAACCACTCATGCTATTCGGTA 59.295 43.478 0.00 0.00 0.00 4.02
2136 2181 2.625790 GCTTGGTCATTGGTTGGTGTAA 59.374 45.455 0.00 0.00 0.00 2.41
2164 2209 9.618890 CATTTTCAGGAAGTTATAATCAGGAGA 57.381 33.333 0.00 0.00 0.00 3.71
2167 2212 7.113658 TCAGGAAGTTATAATCAGGAGACAC 57.886 40.000 0.00 0.00 0.00 3.67
2168 2213 6.897966 TCAGGAAGTTATAATCAGGAGACACT 59.102 38.462 0.00 0.00 0.00 3.55
2169 2214 6.983307 CAGGAAGTTATAATCAGGAGACACTG 59.017 42.308 0.00 0.00 39.84 3.66
2242 2287 7.047891 TCTATGCTGAATTTTACAGTCCGATT 58.952 34.615 0.00 0.00 37.64 3.34
2255 2300 0.107643 TCCGATTGGTTCACTGTGCA 59.892 50.000 2.12 0.00 36.30 4.57
2308 2353 0.810648 GCCCAAATTCAGCGATGTCA 59.189 50.000 0.00 0.00 0.00 3.58
2341 2474 4.860907 TGCTTTTCGTCGTAGGATTAGAAC 59.139 41.667 0.00 0.00 0.00 3.01
2377 2510 7.896811 TCTAATGTTTGTCAGACAGATGTAGT 58.103 34.615 2.82 0.00 0.00 2.73
2404 2538 0.036164 ACTTGGGCTTACGTGCATGA 59.964 50.000 14.17 0.00 34.04 3.07
2410 2544 1.328680 GGCTTACGTGCATGACATCTG 59.671 52.381 14.17 0.00 34.04 2.90
2464 2598 4.201970 TGTTTTCCTGTTTGGTCATTCGTC 60.202 41.667 0.00 0.00 37.07 4.20
2466 2600 0.165944 CCTGTTTGGTCATTCGTCGC 59.834 55.000 0.00 0.00 0.00 5.19
2471 2605 2.093306 TTGGTCATTCGTCGCTGAAT 57.907 45.000 0.00 0.00 39.10 2.57
2477 2611 5.123186 TGGTCATTCGTCGCTGAATAAATTT 59.877 36.000 0.00 0.00 36.46 1.82
2691 2839 3.257393 GTCATGTACTGCACCTCTGAAG 58.743 50.000 0.00 0.00 0.00 3.02
3156 3321 1.591863 GGCGGAGTCGTATGGCTTC 60.592 63.158 0.00 0.00 38.89 3.86
3195 3360 6.640907 GGTTTGTAAATCCTGTGTTGTTCATC 59.359 38.462 0.00 0.00 32.86 2.92
3245 3410 6.237901 TCAGTGTGCATTAAGAAATGGTAGT 58.762 36.000 0.00 0.00 42.39 2.73
3272 3438 4.835284 TTGGGTATTGTATCTGACTGCA 57.165 40.909 0.00 0.00 0.00 4.41
3274 3440 5.372343 TGGGTATTGTATCTGACTGCAAT 57.628 39.130 0.00 7.82 35.86 3.56
3276 3442 5.822519 TGGGTATTGTATCTGACTGCAATTC 59.177 40.000 7.96 0.00 34.06 2.17
3286 3453 4.154737 TCTGACTGCAATTCAATTTCCTCG 59.845 41.667 0.00 0.00 0.00 4.63
3335 3504 0.261696 ACCTGCAAAAGAACCCCACT 59.738 50.000 0.00 0.00 0.00 4.00
3456 3625 1.269448 CAAGTCCGACCCAATTTGGTG 59.731 52.381 14.26 8.26 39.24 4.17
3481 3650 7.884877 TGGCCACTTTATTTATATGGAGATCTG 59.115 37.037 0.00 0.00 31.69 2.90
3555 3725 4.906618 TCTCAGTCCCCATTGTTTTAGTC 58.093 43.478 0.00 0.00 0.00 2.59
3607 3777 2.283529 GCTCACCCGGTTCAGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
3630 3800 3.718210 GAGTCCCCGTGTGATCGCC 62.718 68.421 3.31 0.00 0.00 5.54
3661 3831 1.571955 AACATTCCCAAAGGATGCCC 58.428 50.000 0.00 0.00 43.54 5.36
3722 3893 3.243401 GCTCGTTTGTTGATTCCTTGGTT 60.243 43.478 0.00 0.00 0.00 3.67
3824 3996 4.638304 ACAAAGCATTCGTTAGTACCACT 58.362 39.130 0.00 0.00 0.00 4.00
3835 4007 5.769662 TCGTTAGTACCACTTGTTAAGGAGA 59.230 40.000 0.00 0.00 0.00 3.71
3837 4009 4.886496 AGTACCACTTGTTAAGGAGACC 57.114 45.455 0.00 0.00 0.00 3.85
3850 4022 0.108233 GGAGACCAAGAGCTGAGCTG 60.108 60.000 13.71 0.00 39.88 4.24
3902 4074 2.477863 GGTGAATTGGTTCGTGCATAGC 60.478 50.000 0.00 0.00 37.15 2.97
3915 4087 2.098117 GTGCATAGCATTTCCCACTGAC 59.902 50.000 0.00 0.00 41.91 3.51
3916 4088 1.678101 GCATAGCATTTCCCACTGACC 59.322 52.381 0.00 0.00 0.00 4.02
3917 4089 2.684927 GCATAGCATTTCCCACTGACCT 60.685 50.000 0.00 0.00 0.00 3.85
3921 4093 1.271597 GCATTTCCCACTGACCTGAGT 60.272 52.381 0.00 0.00 0.00 3.41
3926 4098 1.599606 CCCACTGACCTGAGTCCTCG 61.600 65.000 0.00 0.00 42.81 4.63
3963 4135 6.913673 TCTTGCTTGGTTTTTGTAATAACGAC 59.086 34.615 0.00 0.00 0.00 4.34
4051 4223 7.119116 CACAGCATCTTAGTGTAACACCATAAA 59.881 37.037 0.00 0.00 41.43 1.40
4091 4263 3.025262 TGCATATTCAGCATGGAAGCAA 58.975 40.909 0.00 0.00 37.02 3.91
4101 4273 2.754552 GCATGGAAGCAACAGGTGATAA 59.245 45.455 0.00 0.00 0.00 1.75
4106 4278 5.263599 TGGAAGCAACAGGTGATAATTGAT 58.736 37.500 0.00 0.00 0.00 2.57
4109 4281 5.002464 AGCAACAGGTGATAATTGATTGC 57.998 39.130 0.00 0.00 41.11 3.56
4111 4283 6.135290 GCAACAGGTGATAATTGATTGCTA 57.865 37.500 0.00 0.00 38.48 3.49
4115 4287 5.132502 CAGGTGATAATTGATTGCTACCCA 58.867 41.667 0.00 0.00 0.00 4.51
4135 4333 4.506288 CCCAAACTTCGACCATTGTTTTTC 59.494 41.667 0.00 0.00 31.30 2.29
4139 4337 3.243401 ACTTCGACCATTGTTTTTCTGCC 60.243 43.478 0.00 0.00 0.00 4.85
4140 4338 1.611491 TCGACCATTGTTTTTCTGCCC 59.389 47.619 0.00 0.00 0.00 5.36
4162 4360 1.065551 GACACCTTCCAAACTGTGTGC 59.934 52.381 0.00 0.00 41.69 4.57
4166 4364 1.334869 CCTTCCAAACTGTGTGCAGAC 59.665 52.381 7.12 7.12 45.28 3.51
4169 4367 2.722094 TCCAAACTGTGTGCAGACTTT 58.278 42.857 15.76 5.51 45.28 2.66
4206 4404 7.669722 AGTCCTGCTGTTTATAAGGAAATGAAA 59.330 33.333 0.00 0.00 40.45 2.69
4210 4408 9.474920 CTGCTGTTTATAAGGAAATGAAACAAA 57.525 29.630 0.00 0.00 38.97 2.83
4219 4417 4.099881 AGGAAATGAAACAAAGAAGCAGCA 59.900 37.500 0.00 0.00 0.00 4.41
4226 4424 0.386478 CAAAGAAGCAGCAAGGCGTC 60.386 55.000 0.00 3.49 41.69 5.19
4227 4425 2.746359 AGAAGCAGCAAGGCGTCT 59.254 55.556 7.45 7.45 45.66 4.18
4231 4429 0.462759 AAGCAGCAAGGCGTCTATCC 60.463 55.000 0.00 0.00 39.27 2.59
4240 4438 3.433513 AGGCGTCTATCCGTTCTTTAC 57.566 47.619 0.00 0.00 0.00 2.01
4244 4442 4.628766 GGCGTCTATCCGTTCTTTACTTTT 59.371 41.667 0.00 0.00 0.00 2.27
4284 4482 3.992943 AACCAGTATCAATCCGTTCCA 57.007 42.857 0.00 0.00 0.00 3.53
4298 4499 1.272212 CGTTCCAATGAAAACTGGGGG 59.728 52.381 0.00 0.00 33.19 5.40
4302 4503 2.171003 CCAATGAAAACTGGGGGTCTC 58.829 52.381 0.00 0.00 0.00 3.36
4303 4504 1.812571 CAATGAAAACTGGGGGTCTCG 59.187 52.381 0.00 0.00 0.00 4.04
4318 4519 2.338500 GTCTCGGCTTCGAAAATGAGT 58.662 47.619 15.60 0.00 42.80 3.41
4322 4523 0.881118 GGCTTCGAAAATGAGTGGCA 59.119 50.000 0.00 0.00 0.00 4.92
4325 4526 2.162208 GCTTCGAAAATGAGTGGCATGA 59.838 45.455 0.00 0.00 37.28 3.07
4330 4531 4.035909 TCGAAAATGAGTGGCATGATCATG 59.964 41.667 28.04 28.04 41.60 3.07
4346 4547 3.339253 TCATGTGAATCACTGGTCAGG 57.661 47.619 14.97 0.00 35.11 3.86
4347 4548 2.639347 TCATGTGAATCACTGGTCAGGT 59.361 45.455 14.97 0.00 35.11 4.00
4353 4554 4.154918 GTGAATCACTGGTCAGGTTCATTC 59.845 45.833 6.07 10.30 33.96 2.67
4356 4557 5.698741 ATCACTGGTCAGGTTCATTCATA 57.301 39.130 2.87 0.00 0.00 2.15
4361 4562 5.104941 ACTGGTCAGGTTCATTCATAATCGA 60.105 40.000 2.87 0.00 0.00 3.59
4426 4627 4.082125 AGTTAAATTCAAGGTCCAGCAGG 58.918 43.478 0.00 0.00 0.00 4.85
4435 4636 0.257039 GGTCCAGCAGGTCCATCAAT 59.743 55.000 6.55 0.00 42.06 2.57
4437 4638 2.019984 GTCCAGCAGGTCCATCAATTC 58.980 52.381 0.00 0.00 35.89 2.17
4438 4639 1.634973 TCCAGCAGGTCCATCAATTCA 59.365 47.619 0.00 0.00 35.89 2.57
4439 4640 2.242965 TCCAGCAGGTCCATCAATTCAT 59.757 45.455 0.00 0.00 35.89 2.57
4440 4641 3.459227 TCCAGCAGGTCCATCAATTCATA 59.541 43.478 0.00 0.00 35.89 2.15
4441 4642 3.819337 CCAGCAGGTCCATCAATTCATAG 59.181 47.826 0.00 0.00 0.00 2.23
4442 4643 3.252701 CAGCAGGTCCATCAATTCATAGC 59.747 47.826 0.00 0.00 0.00 2.97
4443 4644 2.555757 GCAGGTCCATCAATTCATAGCC 59.444 50.000 0.00 0.00 0.00 3.93
4484 4686 6.659668 TCATATATAGTACCTGAGTCCAGCAC 59.340 42.308 0.00 0.00 39.07 4.40
4490 4693 2.233271 ACCTGAGTCCAGCACAATTTG 58.767 47.619 0.00 0.00 39.07 2.32
4492 4695 2.886523 CCTGAGTCCAGCACAATTTGAA 59.113 45.455 2.79 0.00 39.07 2.69
4493 4696 3.304928 CCTGAGTCCAGCACAATTTGAAC 60.305 47.826 2.79 0.00 39.07 3.18
4496 4699 5.069318 TGAGTCCAGCACAATTTGAACATA 58.931 37.500 2.79 0.00 0.00 2.29
4501 4704 6.311200 GTCCAGCACAATTTGAACATATTTCC 59.689 38.462 2.79 0.00 0.00 3.13
4590 4793 3.911661 GAGCTGATGTTTGCAGTTCTT 57.088 42.857 0.00 0.00 39.55 2.52
4593 4796 3.633525 AGCTGATGTTTGCAGTTCTTCAA 59.366 39.130 0.00 0.00 35.81 2.69
4599 4802 7.140705 TGATGTTTGCAGTTCTTCAATTACAG 58.859 34.615 0.00 0.00 0.00 2.74
4607 4810 7.229306 TGCAGTTCTTCAATTACAGAAACATCT 59.771 33.333 1.04 0.00 30.76 2.90
4608 4811 8.078596 GCAGTTCTTCAATTACAGAAACATCTT 58.921 33.333 1.04 0.00 30.76 2.40
4643 5598 7.052873 AGATCATGCAACTGAGCTAATTACTT 58.947 34.615 6.29 0.00 39.97 2.24
4661 5616 2.563179 ACTTGATCAAGCTACACGGTCT 59.437 45.455 30.95 8.50 41.99 3.85
4673 5628 0.034059 CACGGTCTTGGAGCACTTCT 59.966 55.000 0.00 0.00 0.00 2.85
4724 5679 6.472887 ACCAAAGTGCTACACAGTATTACAT 58.527 36.000 0.00 0.00 36.74 2.29
4734 5689 6.374417 ACACAGTATTACATCCAAACCTCT 57.626 37.500 0.00 0.00 0.00 3.69
4768 5723 3.125316 GCAACGGTTAAGAGTTCCTCATG 59.875 47.826 0.00 0.00 32.06 3.07
4908 5865 9.845740 AATAATCATATGTGTAGTAGTGCCAAA 57.154 29.630 1.90 0.00 0.00 3.28
4940 5897 9.643693 AAATGCATTTCTAAACCTTATTCACAG 57.356 29.630 18.99 0.00 0.00 3.66
4946 5903 5.962433 TCTAAACCTTATTCACAGGACTCG 58.038 41.667 0.00 0.00 35.14 4.18
5022 5979 6.166279 TGTTTAGACAGAAGGCTATGACAAG 58.834 40.000 6.64 0.00 0.00 3.16
5028 5985 2.431057 AGAAGGCTATGACAAGGGTACG 59.569 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.196079 CAGTAACCTGCTAGAAAAATTCCC 57.804 41.667 0.00 0.00 0.00 3.97
44 45 5.280676 CCTCTGCTGCAAAGGGGATATATTA 60.281 44.000 14.33 0.00 37.50 0.98
73 74 4.274978 TCATCGTCATTACTCCAGTGGTA 58.725 43.478 9.54 0.00 0.00 3.25
107 108 7.367794 TGGAATCCCAAAGAGTTTGCAAACTA 61.368 38.462 37.69 23.90 43.50 2.24
133 134 1.067846 TCAGATTCAACCTCGACACGG 60.068 52.381 0.00 0.00 0.00 4.94
139 140 3.057245 TCTGTGAGTCAGATTCAACCTCG 60.057 47.826 0.00 0.00 46.77 4.63
150 151 7.148340 GGAAATGGATAACTTTCTGTGAGTCAG 60.148 40.741 0.00 0.00 44.85 3.51
158 159 6.978343 TGTACGGAAATGGATAACTTTCTG 57.022 37.500 0.00 0.00 41.45 3.02
170 171 7.270047 TCCCTATTCTACTTTGTACGGAAATG 58.730 38.462 0.00 0.00 0.00 2.32
176 177 6.448006 CAGGATCCCTATTCTACTTTGTACG 58.552 44.000 8.55 0.00 29.64 3.67
177 178 6.224584 GCAGGATCCCTATTCTACTTTGTAC 58.775 44.000 8.55 0.00 29.64 2.90
178 179 5.010719 CGCAGGATCCCTATTCTACTTTGTA 59.989 44.000 8.55 0.00 29.64 2.41
179 180 4.202264 CGCAGGATCCCTATTCTACTTTGT 60.202 45.833 8.55 0.00 29.64 2.83
180 181 4.310769 CGCAGGATCCCTATTCTACTTTG 58.689 47.826 8.55 0.00 29.64 2.77
181 182 4.608948 CGCAGGATCCCTATTCTACTTT 57.391 45.455 8.55 0.00 29.64 2.66
206 207 8.417205 ATGTCAACACATTCCGCAAAAATTGC 62.417 38.462 5.02 5.02 46.04 3.56
207 208 4.269603 TGTCAACACATTCCGCAAAAATTG 59.730 37.500 0.00 0.00 0.00 2.32
208 209 4.437239 TGTCAACACATTCCGCAAAAATT 58.563 34.783 0.00 0.00 0.00 1.82
209 210 4.052159 TGTCAACACATTCCGCAAAAAT 57.948 36.364 0.00 0.00 0.00 1.82
210 211 3.510388 TGTCAACACATTCCGCAAAAA 57.490 38.095 0.00 0.00 0.00 1.94
221 222 9.996554 CCCAATATATACTCTAATGTCAACACA 57.003 33.333 0.00 0.00 36.78 3.72
253 254 9.919348 GCAAATCGAAAACAATGCATATAATTT 57.081 25.926 0.00 0.00 34.10 1.82
272 273 2.708514 CGCCACTTGATTAGCAAATCG 58.291 47.619 0.00 0.00 43.84 3.34
276 277 1.132834 CATGCGCCACTTGATTAGCAA 59.867 47.619 4.18 0.00 38.15 3.91
280 281 1.720894 CGCATGCGCCACTTGATTA 59.279 52.632 29.09 0.00 33.11 1.75
333 334 2.365293 GGTGGCTCATCAAACCAACTTT 59.635 45.455 0.00 0.00 38.19 2.66
362 363 3.695816 TGTCTACGAGCGAATTCATCAG 58.304 45.455 6.22 2.91 0.00 2.90
399 400 6.931840 GGAGGGAGTAGCTTTATTACAAGATG 59.068 42.308 0.00 0.00 0.00 2.90
405 406 5.365895 TGGAAGGAGGGAGTAGCTTTATTAC 59.634 44.000 0.00 0.00 0.00 1.89
417 418 7.848875 AGGATTTATATAGATGGAAGGAGGGAG 59.151 40.741 0.00 0.00 0.00 4.30
423 424 9.265901 CGCATTAGGATTTATATAGATGGAAGG 57.734 37.037 0.00 0.00 0.00 3.46
424 425 9.823647 ACGCATTAGGATTTATATAGATGGAAG 57.176 33.333 0.00 0.00 0.00 3.46
434 435 9.997482 GTCTTGAAAAACGCATTAGGATTTATA 57.003 29.630 0.00 0.00 0.00 0.98
435 436 7.973944 GGTCTTGAAAAACGCATTAGGATTTAT 59.026 33.333 0.00 0.00 0.00 1.40
436 437 7.309920 GGTCTTGAAAAACGCATTAGGATTTA 58.690 34.615 0.00 0.00 0.00 1.40
437 438 6.156519 GGTCTTGAAAAACGCATTAGGATTT 58.843 36.000 0.00 0.00 0.00 2.17
438 439 5.619086 CGGTCTTGAAAAACGCATTAGGATT 60.619 40.000 0.00 0.00 0.00 3.01
439 440 4.142687 CGGTCTTGAAAAACGCATTAGGAT 60.143 41.667 0.00 0.00 0.00 3.24
440 441 3.187637 CGGTCTTGAAAAACGCATTAGGA 59.812 43.478 0.00 0.00 0.00 2.94
441 442 3.058501 ACGGTCTTGAAAAACGCATTAGG 60.059 43.478 0.00 0.00 0.00 2.69
442 443 4.084013 AGACGGTCTTGAAAAACGCATTAG 60.084 41.667 4.45 0.00 0.00 1.73
443 444 3.810941 AGACGGTCTTGAAAAACGCATTA 59.189 39.130 4.45 0.00 0.00 1.90
444 445 2.616842 AGACGGTCTTGAAAAACGCATT 59.383 40.909 4.45 0.00 0.00 3.56
445 446 2.218603 AGACGGTCTTGAAAAACGCAT 58.781 42.857 4.45 0.00 0.00 4.73
446 447 1.658994 AGACGGTCTTGAAAAACGCA 58.341 45.000 4.45 0.00 0.00 5.24
447 448 2.750301 AAGACGGTCTTGAAAAACGC 57.250 45.000 21.86 0.00 34.98 4.84
448 449 4.026407 GTCAAAGACGGTCTTGAAAAACG 58.974 43.478 23.05 7.19 36.71 3.60
449 450 5.231265 AGTCAAAGACGGTCTTGAAAAAC 57.769 39.130 23.05 15.61 36.71 2.43
450 451 7.281324 TCAATAGTCAAAGACGGTCTTGAAAAA 59.719 33.333 23.05 10.33 36.71 1.94
451 452 6.764085 TCAATAGTCAAAGACGGTCTTGAAAA 59.236 34.615 23.05 13.38 36.71 2.29
452 453 6.285224 TCAATAGTCAAAGACGGTCTTGAAA 58.715 36.000 23.05 13.66 36.71 2.69
453 454 5.849510 TCAATAGTCAAAGACGGTCTTGAA 58.150 37.500 23.05 11.96 36.71 2.69
454 455 5.462530 TCAATAGTCAAAGACGGTCTTGA 57.537 39.130 23.05 18.16 36.71 3.02
455 456 7.759886 TCTTATCAATAGTCAAAGACGGTCTTG 59.240 37.037 23.05 16.41 36.71 3.02
456 457 7.837863 TCTTATCAATAGTCAAAGACGGTCTT 58.162 34.615 17.38 17.38 38.59 3.01
457 458 7.406031 TCTTATCAATAGTCAAAGACGGTCT 57.594 36.000 4.45 4.45 37.67 3.85
458 459 8.649973 AATCTTATCAATAGTCAAAGACGGTC 57.350 34.615 0.00 0.00 37.67 4.79
516 517 8.826710 CGTATGTGAAAGGAGCTTTTAATGATA 58.173 33.333 0.00 0.00 33.49 2.15
517 518 7.552687 TCGTATGTGAAAGGAGCTTTTAATGAT 59.447 33.333 0.00 0.00 33.49 2.45
518 519 6.876789 TCGTATGTGAAAGGAGCTTTTAATGA 59.123 34.615 0.00 0.00 33.49 2.57
519 520 7.072177 TCGTATGTGAAAGGAGCTTTTAATG 57.928 36.000 0.00 0.00 33.49 1.90
520 521 7.681939 TTCGTATGTGAAAGGAGCTTTTAAT 57.318 32.000 0.00 0.00 33.49 1.40
521 522 7.681939 ATTCGTATGTGAAAGGAGCTTTTAA 57.318 32.000 0.00 0.00 33.49 1.52
522 523 7.681939 AATTCGTATGTGAAAGGAGCTTTTA 57.318 32.000 0.00 0.00 33.49 1.52
523 524 6.575162 AATTCGTATGTGAAAGGAGCTTTT 57.425 33.333 0.00 0.00 33.49 2.27
524 525 6.206634 TCAAATTCGTATGTGAAAGGAGCTTT 59.793 34.615 0.00 0.00 36.29 3.51
525 526 5.705441 TCAAATTCGTATGTGAAAGGAGCTT 59.295 36.000 0.00 0.00 0.00 3.74
526 527 5.122396 GTCAAATTCGTATGTGAAAGGAGCT 59.878 40.000 0.00 0.00 29.80 4.09
527 528 5.324697 GTCAAATTCGTATGTGAAAGGAGC 58.675 41.667 0.00 0.00 29.80 4.70
528 529 5.445939 CCGTCAAATTCGTATGTGAAAGGAG 60.446 44.000 10.57 0.00 33.27 3.69
529 530 4.390603 CCGTCAAATTCGTATGTGAAAGGA 59.609 41.667 10.57 0.00 33.27 3.36
530 531 4.153475 ACCGTCAAATTCGTATGTGAAAGG 59.847 41.667 13.13 13.13 35.64 3.11
531 532 5.277601 ACCGTCAAATTCGTATGTGAAAG 57.722 39.130 0.00 0.00 29.80 2.62
532 533 6.673556 GCATACCGTCAAATTCGTATGTGAAA 60.674 38.462 0.00 0.00 29.80 2.69
533 534 5.220510 GCATACCGTCAAATTCGTATGTGAA 60.221 40.000 0.00 0.00 29.80 3.18
534 535 4.269123 GCATACCGTCAAATTCGTATGTGA 59.731 41.667 0.00 0.00 31.72 3.58
535 536 4.270084 AGCATACCGTCAAATTCGTATGTG 59.730 41.667 0.00 0.00 31.72 3.21
536 537 4.439057 AGCATACCGTCAAATTCGTATGT 58.561 39.130 0.00 0.00 31.72 2.29
537 538 5.403897 AAGCATACCGTCAAATTCGTATG 57.596 39.130 0.00 0.00 0.00 2.39
538 539 5.353123 ACAAAGCATACCGTCAAATTCGTAT 59.647 36.000 0.00 0.00 0.00 3.06
539 540 4.691685 ACAAAGCATACCGTCAAATTCGTA 59.308 37.500 0.00 0.00 0.00 3.43
540 541 3.500680 ACAAAGCATACCGTCAAATTCGT 59.499 39.130 0.00 0.00 0.00 3.85
541 542 3.845775 CACAAAGCATACCGTCAAATTCG 59.154 43.478 0.00 0.00 0.00 3.34
542 543 4.794169 ACACAAAGCATACCGTCAAATTC 58.206 39.130 0.00 0.00 0.00 2.17
543 544 4.846779 ACACAAAGCATACCGTCAAATT 57.153 36.364 0.00 0.00 0.00 1.82
544 545 5.472137 AGTTACACAAAGCATACCGTCAAAT 59.528 36.000 0.00 0.00 0.00 2.32
545 546 4.817464 AGTTACACAAAGCATACCGTCAAA 59.183 37.500 0.00 0.00 0.00 2.69
546 547 4.382291 AGTTACACAAAGCATACCGTCAA 58.618 39.130 0.00 0.00 0.00 3.18
547 548 3.997762 AGTTACACAAAGCATACCGTCA 58.002 40.909 0.00 0.00 0.00 4.35
548 549 4.708601 CAAGTTACACAAAGCATACCGTC 58.291 43.478 0.00 0.00 0.00 4.79
549 550 3.058501 GCAAGTTACACAAAGCATACCGT 60.059 43.478 0.00 0.00 0.00 4.83
550 551 3.058570 TGCAAGTTACACAAAGCATACCG 60.059 43.478 0.00 0.00 0.00 4.02
551 552 4.497473 TGCAAGTTACACAAAGCATACC 57.503 40.909 0.00 0.00 0.00 2.73
552 553 5.460646 ACATGCAAGTTACACAAAGCATAC 58.539 37.500 0.00 0.00 40.38 2.39
553 554 5.240403 TGACATGCAAGTTACACAAAGCATA 59.760 36.000 0.00 0.00 40.38 3.14
554 555 4.037803 TGACATGCAAGTTACACAAAGCAT 59.962 37.500 0.00 0.00 42.82 3.79
555 556 3.379688 TGACATGCAAGTTACACAAAGCA 59.620 39.130 0.00 0.00 36.34 3.91
556 557 3.963665 TGACATGCAAGTTACACAAAGC 58.036 40.909 0.00 0.00 0.00 3.51
557 558 8.668353 ACTATATGACATGCAAGTTACACAAAG 58.332 33.333 0.00 0.00 0.00 2.77
558 559 8.560355 ACTATATGACATGCAAGTTACACAAA 57.440 30.769 0.00 0.00 0.00 2.83
559 560 9.830975 ATACTATATGACATGCAAGTTACACAA 57.169 29.630 0.00 0.00 0.00 3.33
560 561 9.830975 AATACTATATGACATGCAAGTTACACA 57.169 29.630 0.00 0.00 0.00 3.72
562 563 8.773645 GCAATACTATATGACATGCAAGTTACA 58.226 33.333 0.00 0.00 32.80 2.41
563 564 8.993121 AGCAATACTATATGACATGCAAGTTAC 58.007 33.333 0.00 0.00 34.89 2.50
564 565 9.208022 GAGCAATACTATATGACATGCAAGTTA 57.792 33.333 0.00 0.00 34.89 2.24
565 566 7.935755 AGAGCAATACTATATGACATGCAAGTT 59.064 33.333 0.00 0.00 34.89 2.66
566 567 7.448420 AGAGCAATACTATATGACATGCAAGT 58.552 34.615 0.00 0.00 34.89 3.16
567 568 7.902387 AGAGCAATACTATATGACATGCAAG 57.098 36.000 0.00 0.00 34.89 4.01
568 569 9.777297 TTTAGAGCAATACTATATGACATGCAA 57.223 29.630 0.00 0.00 34.89 4.08
569 570 9.777297 TTTTAGAGCAATACTATATGACATGCA 57.223 29.630 0.00 0.00 34.89 3.96
586 587 9.691362 GACTAATTTTGACCAAATTTTAGAGCA 57.309 29.630 20.46 0.00 41.57 4.26
587 588 9.914131 AGACTAATTTTGACCAAATTTTAGAGC 57.086 29.630 20.46 15.16 41.57 4.09
616 617 9.125026 CATCTATACAAGGCCTAATGAGTTTTT 57.875 33.333 5.16 0.00 0.00 1.94
617 618 7.721399 CCATCTATACAAGGCCTAATGAGTTTT 59.279 37.037 5.16 0.00 0.00 2.43
618 619 7.072454 TCCATCTATACAAGGCCTAATGAGTTT 59.928 37.037 5.16 0.00 0.00 2.66
619 620 6.558775 TCCATCTATACAAGGCCTAATGAGTT 59.441 38.462 5.16 0.00 0.00 3.01
620 621 6.084738 TCCATCTATACAAGGCCTAATGAGT 58.915 40.000 5.16 2.59 0.00 3.41
621 622 6.351711 CCTCCATCTATACAAGGCCTAATGAG 60.352 46.154 5.16 0.00 0.00 2.90
622 623 5.485353 CCTCCATCTATACAAGGCCTAATGA 59.515 44.000 5.16 0.00 0.00 2.57
623 624 5.338708 CCCTCCATCTATACAAGGCCTAATG 60.339 48.000 5.16 3.69 0.00 1.90
624 625 4.785376 CCCTCCATCTATACAAGGCCTAAT 59.215 45.833 5.16 2.64 0.00 1.73
625 626 4.140543 TCCCTCCATCTATACAAGGCCTAA 60.141 45.833 5.16 0.00 0.00 2.69
626 627 3.404769 TCCCTCCATCTATACAAGGCCTA 59.595 47.826 5.16 0.00 0.00 3.93
627 628 2.182312 TCCCTCCATCTATACAAGGCCT 59.818 50.000 0.00 0.00 0.00 5.19
628 629 2.569404 CTCCCTCCATCTATACAAGGCC 59.431 54.545 0.00 0.00 0.00 5.19
629 630 2.569404 CCTCCCTCCATCTATACAAGGC 59.431 54.545 0.00 0.00 0.00 4.35
630 631 3.177228 CCCTCCCTCCATCTATACAAGG 58.823 54.545 0.00 0.00 0.00 3.61
631 632 4.093011 CTCCCTCCCTCCATCTATACAAG 58.907 52.174 0.00 0.00 0.00 3.16
632 633 3.471306 ACTCCCTCCCTCCATCTATACAA 59.529 47.826 0.00 0.00 0.00 2.41
633 634 3.072086 ACTCCCTCCCTCCATCTATACA 58.928 50.000 0.00 0.00 0.00 2.29
634 635 3.837399 ACTCCCTCCCTCCATCTATAC 57.163 52.381 0.00 0.00 0.00 1.47
635 636 3.269906 GCTACTCCCTCCCTCCATCTATA 59.730 52.174 0.00 0.00 0.00 1.31
636 637 2.043801 GCTACTCCCTCCCTCCATCTAT 59.956 54.545 0.00 0.00 0.00 1.98
637 638 1.429687 GCTACTCCCTCCCTCCATCTA 59.570 57.143 0.00 0.00 0.00 1.98
638 639 0.189822 GCTACTCCCTCCCTCCATCT 59.810 60.000 0.00 0.00 0.00 2.90
639 640 0.834261 GGCTACTCCCTCCCTCCATC 60.834 65.000 0.00 0.00 0.00 3.51
640 641 1.237458 GGCTACTCCCTCCCTCCAT 59.763 63.158 0.00 0.00 0.00 3.41
641 642 1.603633 ATGGCTACTCCCTCCCTCCA 61.604 60.000 0.00 0.00 0.00 3.86
642 643 1.124477 CATGGCTACTCCCTCCCTCC 61.124 65.000 0.00 0.00 0.00 4.30
643 644 0.105453 TCATGGCTACTCCCTCCCTC 60.105 60.000 0.00 0.00 0.00 4.30
644 645 0.570218 ATCATGGCTACTCCCTCCCT 59.430 55.000 0.00 0.00 0.00 4.20
645 646 0.689623 CATCATGGCTACTCCCTCCC 59.310 60.000 0.00 0.00 0.00 4.30
646 647 0.689623 CCATCATGGCTACTCCCTCC 59.310 60.000 0.00 0.00 0.00 4.30
1108 1121 2.124487 ACGAGAGCGGAGGAGGAG 60.124 66.667 0.00 0.00 43.17 3.69
1402 1415 5.490213 CGGACTTCACGAAGCAATTAATAC 58.510 41.667 6.71 0.00 41.99 1.89
1427 1440 2.629050 TTAGGATCGAGGTGCAGCGC 62.629 60.000 10.78 10.27 0.00 5.92
1445 1458 2.244000 CGAAACACGGAGCCATGTT 58.756 52.632 0.00 0.00 40.76 2.71
1513 1526 4.789075 AACCATCGCGTCCGTCCG 62.789 66.667 5.77 0.00 35.54 4.79
1563 1577 1.152546 GGAGAGAGGGAGAGGAGGC 60.153 68.421 0.00 0.00 0.00 4.70
1592 1621 1.460267 CGCAACGAACGACTCATGAAC 60.460 52.381 0.00 0.00 0.00 3.18
1599 1628 1.060713 CAATCTCGCAACGAACGACT 58.939 50.000 0.14 0.00 34.74 4.18
1720 1749 6.307318 TCGTAGTCTCTAAAAACGAAGCAATC 59.693 38.462 0.00 0.00 39.40 2.67
1721 1750 6.154445 TCGTAGTCTCTAAAAACGAAGCAAT 58.846 36.000 0.00 0.00 39.40 3.56
1722 1751 5.522456 TCGTAGTCTCTAAAAACGAAGCAA 58.478 37.500 0.00 0.00 39.40 3.91
1723 1752 5.112220 TCGTAGTCTCTAAAAACGAAGCA 57.888 39.130 0.00 0.00 39.40 3.91
1724 1753 6.307318 TCAATCGTAGTCTCTAAAAACGAAGC 59.693 38.462 0.00 0.00 44.65 3.86
1725 1754 7.792383 TCAATCGTAGTCTCTAAAAACGAAG 57.208 36.000 0.00 0.00 44.65 3.79
1726 1755 7.487189 GGATCAATCGTAGTCTCTAAAAACGAA 59.513 37.037 0.00 0.00 44.65 3.85
1727 1756 6.971184 GGATCAATCGTAGTCTCTAAAAACGA 59.029 38.462 0.00 0.00 45.44 3.85
1795 1831 2.754946 TGACAGTAAACCCATCGGAC 57.245 50.000 0.00 0.00 0.00 4.79
1799 1835 5.766174 TGGTAACTTTGACAGTAAACCCATC 59.234 40.000 2.03 0.00 39.48 3.51
1807 1843 6.092955 CCAGTACTGGTAACTTTGACAGTA 57.907 41.667 30.57 0.00 45.53 2.74
1868 1904 5.986501 ACACTAAACAAACCCTGAAACAA 57.013 34.783 0.00 0.00 0.00 2.83
1883 1919 6.655848 ACCACTGGCGAATAATTTACACTAAA 59.344 34.615 0.00 0.00 0.00 1.85
1891 1927 6.061441 TGATCATACCACTGGCGAATAATTT 58.939 36.000 0.00 0.00 0.00 1.82
1903 1939 3.643320 ACCGACATCATGATCATACCACT 59.357 43.478 8.15 0.00 0.00 4.00
1904 1940 3.742882 CACCGACATCATGATCATACCAC 59.257 47.826 8.15 0.00 0.00 4.16
1913 1949 4.260985 ACTTTTATGCACCGACATCATGA 58.739 39.130 0.00 0.00 0.00 3.07
1914 1950 4.621068 ACTTTTATGCACCGACATCATG 57.379 40.909 0.00 0.00 0.00 3.07
1915 1951 5.643379 AAACTTTTATGCACCGACATCAT 57.357 34.783 0.00 0.00 0.00 2.45
1916 1952 5.446143 AAAACTTTTATGCACCGACATCA 57.554 34.783 0.00 0.00 0.00 3.07
1917 1953 5.118510 CCAAAAACTTTTATGCACCGACATC 59.881 40.000 0.00 0.00 0.00 3.06
1918 1954 4.987912 CCAAAAACTTTTATGCACCGACAT 59.012 37.500 0.00 0.00 0.00 3.06
1924 1960 5.234116 CAGTGGACCAAAAACTTTTATGCAC 59.766 40.000 0.00 11.74 37.20 4.57
1930 1966 8.726068 CATTTAAACAGTGGACCAAAAACTTTT 58.274 29.630 0.00 0.00 0.00 2.27
1933 1969 6.816140 CACATTTAAACAGTGGACCAAAAACT 59.184 34.615 12.53 0.00 0.00 2.66
1954 1990 8.627403 CAATCATAGAAGAATAGTTTGCCACAT 58.373 33.333 0.00 0.00 0.00 3.21
1976 2012 4.690122 AGTAACCCTACACATACGCAATC 58.310 43.478 0.00 0.00 0.00 2.67
1998 2034 9.283768 ACATGAAACATTAGAAATCACACTGTA 57.716 29.630 0.00 0.00 0.00 2.74
2032 2069 6.900299 GCGCTAGTTAATTTTCTACACATGTC 59.100 38.462 0.00 0.00 0.00 3.06
2048 2085 4.571984 TGTCATACTCGTAAGCGCTAGTTA 59.428 41.667 12.05 0.00 38.14 2.24
2054 2091 2.721603 CAGATGTCATACTCGTAAGCGC 59.278 50.000 0.00 0.00 38.14 5.92
2057 2094 6.786207 TCTGAACAGATGTCATACTCGTAAG 58.214 40.000 0.00 0.00 31.41 2.34
2107 2152 5.511202 CCAACCAATGACCAAGCAGTAAAAT 60.511 40.000 0.00 0.00 0.00 1.82
2136 2181 9.753674 TCCTGATTATAACTTCCTGAAAATGTT 57.246 29.630 0.00 0.00 0.00 2.71
2164 2209 7.308782 GCATTTAGCAACTATTAGACAGTGT 57.691 36.000 0.00 0.00 44.79 3.55
2242 2287 3.348119 TGTTAACTTGCACAGTGAACCA 58.652 40.909 18.71 9.81 44.12 3.67
2255 2300 5.355910 CACACCAAACCAGTACTGTTAACTT 59.644 40.000 21.18 4.54 0.00 2.66
2320 2409 5.404946 TGGTTCTAATCCTACGACGAAAAG 58.595 41.667 0.00 0.00 0.00 2.27
2325 2414 3.128242 ACACTGGTTCTAATCCTACGACG 59.872 47.826 0.00 0.00 0.00 5.12
2341 2474 6.969366 TGACAAACATTAGAAATCACACTGG 58.031 36.000 0.00 0.00 0.00 4.00
2377 2510 4.320641 GCACGTAAGCCCAAGTTAATTTGA 60.321 41.667 11.94 0.00 45.62 2.69
2404 2538 7.397221 TGATGGTTCTTATTCTGAACAGATGT 58.603 34.615 5.34 1.30 43.84 3.06
2410 2544 5.645497 AGCACTGATGGTTCTTATTCTGAAC 59.355 40.000 0.00 0.00 42.00 3.18
2477 2611 5.846164 TGCCTCCTGATTATATCTTCCTGAA 59.154 40.000 0.00 0.00 0.00 3.02
2631 2774 2.032680 TAGACGCCCCAAAATACAGC 57.967 50.000 0.00 0.00 0.00 4.40
3156 3321 2.542907 AAACCTGAACAGCACGGCG 61.543 57.895 4.80 4.80 0.00 6.46
3191 3356 5.783875 AGACATCAGATGACCATATGGATGA 59.216 40.000 28.77 20.50 38.94 2.92
3195 3360 4.041321 ACCAGACATCAGATGACCATATGG 59.959 45.833 20.68 20.68 42.17 2.74
3272 3438 1.133025 CCGCTGCGAGGAAATTGAATT 59.867 47.619 25.45 0.00 0.00 2.17
3274 3440 1.922135 GCCGCTGCGAGGAAATTGAA 61.922 55.000 25.45 0.00 0.00 2.69
3276 3442 1.926511 AAGCCGCTGCGAGGAAATTG 61.927 55.000 25.45 4.87 44.33 2.32
3393 3562 3.514645 CAATAGCAAAGCCGCAAAGAAT 58.485 40.909 0.00 0.00 0.00 2.40
3456 3625 7.885399 ACAGATCTCCATATAAATAAAGTGGCC 59.115 37.037 0.00 0.00 0.00 5.36
3506 3675 8.883302 TCTAATCATATGGTTCATCAATCTCCA 58.117 33.333 4.00 0.00 0.00 3.86
3555 3725 3.192844 TCGAGTAGGAAACAGCAGTAAGG 59.807 47.826 0.00 0.00 0.00 2.69
3607 3777 0.898789 ATCACACGGGGACTCGTCTT 60.899 55.000 0.00 0.00 41.86 3.01
3630 3800 0.165944 GGAATGTTTCGACAGCACGG 59.834 55.000 0.00 0.00 0.00 4.94
3661 3831 4.474113 GTCTACTTTATACAGGGCGATCG 58.526 47.826 11.69 11.69 0.00 3.69
3722 3893 2.026542 AGCAAGATTCACATCCAGCAGA 60.027 45.455 0.00 0.00 33.93 4.26
3812 3984 5.860716 GTCTCCTTAACAAGTGGTACTAACG 59.139 44.000 0.00 0.00 0.00 3.18
3824 3996 3.646162 TCAGCTCTTGGTCTCCTTAACAA 59.354 43.478 0.00 0.00 0.00 2.83
3835 4007 2.158696 AGAAAACAGCTCAGCTCTTGGT 60.159 45.455 0.00 0.00 36.40 3.67
3837 4009 3.136763 TCAGAAAACAGCTCAGCTCTTG 58.863 45.455 0.00 0.00 36.40 3.02
3850 4022 7.550551 TCTCAGACATACCATCATTCAGAAAAC 59.449 37.037 0.00 0.00 0.00 2.43
3902 4074 2.616510 GGACTCAGGTCAGTGGGAAATG 60.617 54.545 0.00 0.00 43.77 2.32
3915 4087 1.671901 GGCTTCCTCGAGGACTCAGG 61.672 65.000 33.75 20.14 45.39 3.86
3916 4088 0.967887 TGGCTTCCTCGAGGACTCAG 60.968 60.000 33.75 27.24 45.39 3.35
3917 4089 0.324738 ATGGCTTCCTCGAGGACTCA 60.325 55.000 33.75 27.89 45.39 3.41
3921 4093 1.573108 AGAAATGGCTTCCTCGAGGA 58.427 50.000 30.49 30.49 43.73 3.71
3926 4098 2.094338 CCAAGCAAGAAATGGCTTCCTC 60.094 50.000 0.00 0.00 46.82 3.71
3963 4135 7.695618 GCTGTTCATAAGCAAGAAATGTCTAAG 59.304 37.037 0.00 0.00 40.52 2.18
4020 4192 2.693069 ACACTAAGATGCTGTGCACTC 58.307 47.619 19.41 10.42 43.04 3.51
4051 4223 2.554032 GCAGTTGTGTGGTAAGCAGAAT 59.446 45.455 0.00 0.00 0.00 2.40
4091 4263 5.133221 GGGTAGCAATCAATTATCACCTGT 58.867 41.667 0.00 0.00 0.00 4.00
4101 4273 4.156008 GTCGAAGTTTGGGTAGCAATCAAT 59.844 41.667 0.00 0.00 0.00 2.57
4106 4278 1.141254 TGGTCGAAGTTTGGGTAGCAA 59.859 47.619 0.00 0.00 0.00 3.91
4109 4281 3.408634 ACAATGGTCGAAGTTTGGGTAG 58.591 45.455 0.00 0.00 0.00 3.18
4111 4283 2.358322 ACAATGGTCGAAGTTTGGGT 57.642 45.000 0.00 0.00 0.00 4.51
4115 4287 4.803613 GCAGAAAAACAATGGTCGAAGTTT 59.196 37.500 0.00 0.00 35.87 2.66
4169 4367 5.596836 AACAGCAGGACTTTCAAATTTGA 57.403 34.783 16.91 16.91 34.92 2.69
4180 4378 6.721318 TCATTTCCTTATAAACAGCAGGACT 58.279 36.000 0.00 0.00 35.04 3.85
4206 4404 1.103398 ACGCCTTGCTGCTTCTTTGT 61.103 50.000 0.00 0.00 0.00 2.83
4210 4408 0.539051 ATAGACGCCTTGCTGCTTCT 59.461 50.000 0.00 7.40 41.96 2.85
4219 4417 3.446516 AGTAAAGAACGGATAGACGCCTT 59.553 43.478 0.00 0.00 37.37 4.35
4244 4442 9.268282 ACTGGTTATCTACTGGAGAAGAAAATA 57.732 33.333 0.00 0.00 37.85 1.40
4261 4459 5.607477 TGGAACGGATTGATACTGGTTATC 58.393 41.667 0.00 0.00 37.67 1.75
4284 4482 1.271926 CCGAGACCCCCAGTTTTCATT 60.272 52.381 0.00 0.00 0.00 2.57
4298 4499 2.092838 CACTCATTTTCGAAGCCGAGAC 59.907 50.000 20.18 0.00 46.39 3.36
4302 4503 0.179189 GCCACTCATTTTCGAAGCCG 60.179 55.000 0.00 0.00 37.07 5.52
4303 4504 0.881118 TGCCACTCATTTTCGAAGCC 59.119 50.000 0.00 0.00 0.00 4.35
4318 4519 3.630312 CAGTGATTCACATGATCATGCCA 59.370 43.478 31.17 17.53 42.39 4.92
4322 4523 5.106876 TGACCAGTGATTCACATGATCAT 57.893 39.130 18.57 1.18 36.74 2.45
4325 4526 3.265221 ACCTGACCAGTGATTCACATGAT 59.735 43.478 18.57 1.57 36.74 2.45
4330 4531 3.126001 TGAACCTGACCAGTGATTCAC 57.874 47.619 8.82 8.82 34.10 3.18
4396 4597 7.514721 TGGACCTTGAATTTAACTCAAGTACT 58.485 34.615 13.84 0.00 45.53 2.73
4402 4603 4.724399 TGCTGGACCTTGAATTTAACTCA 58.276 39.130 0.00 0.00 0.00 3.41
4403 4604 4.156739 CCTGCTGGACCTTGAATTTAACTC 59.843 45.833 2.92 0.00 34.57 3.01
4413 4614 0.393537 GATGGACCTGCTGGACCTTG 60.394 60.000 26.35 0.00 46.17 3.61
4419 4620 2.133281 TGAATTGATGGACCTGCTGG 57.867 50.000 8.29 8.29 39.83 4.85
4426 4627 5.499139 TTTTCGGCTATGAATTGATGGAC 57.501 39.130 0.00 0.00 0.00 4.02
4465 4667 3.101643 TGTGCTGGACTCAGGTACTAT 57.898 47.619 0.00 0.00 41.19 2.12
4469 4671 3.072330 TCAAATTGTGCTGGACTCAGGTA 59.928 43.478 0.00 0.00 41.19 3.08
4643 5598 2.353704 CCAAGACCGTGTAGCTTGATCA 60.354 50.000 0.00 0.00 41.03 2.92
4661 5616 3.507162 TTTCATCCAGAAGTGCTCCAA 57.493 42.857 0.00 0.00 37.57 3.53
4673 5628 5.048083 GGTAGTTGCAGAATGTTTTCATCCA 60.048 40.000 0.00 0.00 39.94 3.41
4724 5679 4.503296 GCTTCACTGTAGAAGAGGTTTGGA 60.503 45.833 18.02 0.00 46.18 3.53
4734 5689 2.902705 ACCGTTGCTTCACTGTAGAA 57.097 45.000 0.00 0.00 0.00 2.10
4885 5842 7.280876 CAGTTTGGCACTACTACACATATGATT 59.719 37.037 10.38 0.00 32.76 2.57
4927 5884 3.576982 TGTCGAGTCCTGTGAATAAGGTT 59.423 43.478 0.00 0.00 36.14 3.50
4928 5885 3.162666 TGTCGAGTCCTGTGAATAAGGT 58.837 45.455 0.00 0.00 36.14 3.50
4940 5897 0.456312 CGGTTGCTACTGTCGAGTCC 60.456 60.000 0.00 0.00 33.21 3.85
4946 5903 3.377485 TCTCATCTACGGTTGCTACTGTC 59.623 47.826 16.19 0.00 42.85 3.51
4997 5954 6.299805 TGTCATAGCCTTCTGTCTAAACAT 57.700 37.500 0.00 0.00 34.13 2.71
5022 5979 6.854496 TCTTGTTATAATTGATGCGTACCC 57.146 37.500 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.