Multiple sequence alignment - TraesCS2D01G190600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G190600 chr2D 100.000 7066 0 0 1 7066 134638673 134645738 0.000000e+00 13049.0
1 TraesCS2D01G190600 chr2D 91.549 284 15 6 6667 6948 567018967 567018691 4.000000e-102 383.0
2 TraesCS2D01G190600 chr2D 91.197 284 20 5 6667 6948 563965848 563966128 1.440000e-101 381.0
3 TraesCS2D01G190600 chr2B 93.051 3641 140 35 1 3607 191537040 191540601 0.000000e+00 5217.0
4 TraesCS2D01G190600 chr2B 95.117 2048 82 12 3726 5765 191540861 191542898 0.000000e+00 3212.0
5 TraesCS2D01G190600 chr2B 89.831 649 44 17 5942 6584 191543192 191543824 0.000000e+00 813.0
6 TraesCS2D01G190600 chr2B 92.818 181 12 1 5752 5931 191542926 191543106 1.960000e-65 261.0
7 TraesCS2D01G190600 chr2B 95.062 81 4 0 3592 3672 191540782 191540862 2.070000e-25 128.0
8 TraesCS2D01G190600 chr2B 96.491 57 2 0 3671 3727 695378390 695378446 2.100000e-15 95.3
9 TraesCS2D01G190600 chr2A 94.318 2288 105 14 596 2876 142683549 142685818 0.000000e+00 3482.0
10 TraesCS2D01G190600 chr2A 93.474 2222 112 19 3726 5936 142686667 142688866 0.000000e+00 3269.0
11 TraesCS2D01G190600 chr2A 94.273 873 25 3 2800 3672 142685821 142686668 0.000000e+00 1312.0
12 TraesCS2D01G190600 chr2A 90.333 600 42 10 5998 6584 142689028 142689624 0.000000e+00 773.0
13 TraesCS2D01G190600 chr2A 92.151 344 18 5 132 469 142682859 142683199 1.780000e-130 477.0
14 TraesCS2D01G190600 chr7D 93.262 282 14 5 6669 6948 630612534 630612812 1.830000e-110 411.0
15 TraesCS2D01G190600 chr7D 94.118 272 10 4 6667 6937 182599470 182599736 6.600000e-110 409.0
16 TraesCS2D01G190600 chr7D 98.165 109 2 0 6958 7066 182600192 182600300 2.600000e-44 191.0
17 TraesCS2D01G190600 chr7D 93.750 64 3 1 3664 3727 551735568 551735506 2.100000e-15 95.3
18 TraesCS2D01G190600 chr7A 92.419 277 15 6 6673 6948 725812921 725813192 2.390000e-104 390.0
19 TraesCS2D01G190600 chr7A 98.165 109 2 0 6958 7066 57806147 57806255 2.600000e-44 191.0
20 TraesCS2D01G190600 chr1D 92.674 273 14 6 6667 6937 334053230 334053498 8.600000e-104 388.0
21 TraesCS2D01G190600 chr6D 91.971 274 16 6 6667 6937 444087111 444086841 5.170000e-101 379.0
22 TraesCS2D01G190600 chr6D 91.135 282 18 6 6667 6947 417885517 417885242 6.690000e-100 375.0
23 TraesCS2D01G190600 chr6D 98.165 109 2 0 6958 7066 110655427 110655319 2.600000e-44 191.0
24 TraesCS2D01G190600 chr6D 96.491 57 2 0 3671 3727 284394950 284395006 2.100000e-15 95.3
25 TraesCS2D01G190600 chr4D 90.845 284 17 7 6667 6948 81327019 81327295 8.660000e-99 372.0
26 TraesCS2D01G190600 chr7B 98.165 109 2 0 6958 7066 670031455 670031563 2.600000e-44 191.0
27 TraesCS2D01G190600 chr7B 97.273 110 3 0 6957 7066 134504753 134504644 3.370000e-43 187.0
28 TraesCS2D01G190600 chr5A 98.165 109 2 0 6958 7066 52413575 52413467 2.600000e-44 191.0
29 TraesCS2D01G190600 chr3A 98.165 109 2 0 6958 7066 653964770 653964878 2.600000e-44 191.0
30 TraesCS2D01G190600 chr1B 98.165 109 2 0 6958 7066 120660708 120660816 2.600000e-44 191.0
31 TraesCS2D01G190600 chr1B 98.148 108 2 0 6958 7065 576146529 576146422 9.360000e-44 189.0
32 TraesCS2D01G190600 chr1B 93.151 73 4 1 3664 3736 656234053 656234124 9.690000e-19 106.0
33 TraesCS2D01G190600 chr1B 90.909 66 4 1 3662 3727 354922681 354922744 3.510000e-13 87.9
34 TraesCS2D01G190600 chr1A 91.429 70 3 1 3667 3733 363454147 363454216 7.550000e-15 93.5
35 TraesCS2D01G190600 chr3D 92.424 66 2 1 3665 3727 593276177 593276242 2.710000e-14 91.6
36 TraesCS2D01G190600 chr3D 89.855 69 7 0 3662 3730 42316868 42316936 9.760000e-14 89.8
37 TraesCS2D01G190600 chr6B 90.909 66 2 2 3662 3727 42432687 42432748 1.260000e-12 86.1
38 TraesCS2D01G190600 chr4B 95.238 42 1 1 773 813 468659356 468659315 1.650000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G190600 chr2D 134638673 134645738 7065 False 13049.0 13049 100.0000 1 7066 1 chr2D.!!$F1 7065
1 TraesCS2D01G190600 chr2B 191537040 191543824 6784 False 1926.2 5217 93.1758 1 6584 5 chr2B.!!$F2 6583
2 TraesCS2D01G190600 chr2A 142682859 142689624 6765 False 1862.6 3482 92.9098 132 6584 5 chr2A.!!$F1 6452
3 TraesCS2D01G190600 chr7D 182599470 182600300 830 False 300.0 409 96.1415 6667 7066 2 chr7D.!!$F2 399

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 291 0.107654 GTCCATCCTCCCGTTGGAAG 60.108 60.000 0.00 0.0 41.16 3.46 F
384 409 0.326264 TCCTTTCCTCTGCTTGCTCC 59.674 55.000 0.00 0.0 0.00 4.70 F
572 602 0.672711 GGAAAAGGTCGCCGTAGCTT 60.673 55.000 0.00 0.0 38.80 3.74 F
901 1153 1.079543 CGGCAGTGAGGACCTTCAG 60.080 63.158 0.00 0.0 0.00 3.02 F
970 1222 1.193650 CCGTGTATGGTTTGACGTGTG 59.806 52.381 0.00 0.0 0.00 3.82 F
1168 1420 1.258676 GGTGGAGAAGAAGGACGACT 58.741 55.000 0.00 0.0 0.00 4.18 F
2798 3072 2.012673 GTCAAAGCCTCATTCGAGCAT 58.987 47.619 0.00 0.0 38.00 3.79 F
3353 3705 1.888215 CATCATGCGCCCTTACATCT 58.112 50.000 4.18 0.0 0.00 2.90 F
3932 4487 0.254178 GTCCAGTGGCATCATGTCCT 59.746 55.000 3.51 0.0 0.00 3.85 F
5046 5607 0.864455 GAACGCCATAGCAGAGATGC 59.136 55.000 0.00 0.0 39.83 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2514 0.323957 AAGTTGTACGGAAGGAGGGC 59.676 55.000 0.00 0.0 0.00 5.19 R
2574 2848 1.231221 ACAACTCGGCAAATACGCAA 58.769 45.000 0.00 0.0 0.00 4.85 R
2754 3028 1.497309 CCCCAAAGAGCCCACACCTA 61.497 60.000 0.00 0.0 0.00 3.08 R
2788 3062 2.350484 GCATGACCATGATGCTCGAATG 60.350 50.000 13.67 0.0 42.52 2.67 R
2960 3312 3.243501 GGCAACAGTGAAAGCTCATTGAA 60.244 43.478 0.00 0.0 40.76 2.69 R
3353 3705 2.037641 CGCATGATGGGATCTTACCTCA 59.962 50.000 3.03 0.0 31.21 3.86 R
3674 4227 1.070758 CTGACATTATGGGACGGAGGG 59.929 57.143 0.00 0.0 0.00 4.30 R
5046 5607 0.179250 GTTGACACGTGCTACATGCG 60.179 55.000 17.22 0.0 46.63 4.73 R
6017 6701 0.176449 CACCAGGCGATCATCAGACA 59.824 55.000 0.00 0.0 0.00 3.41 R
6388 7105 0.168128 CTCAACGCAAACCCCGAATC 59.832 55.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.392181 CGCCGTTGCAAACCCGATA 61.392 57.895 0.00 0.00 46.28 2.92
41 42 1.798087 CCGTTGCAAACCCGATACC 59.202 57.895 0.00 0.00 46.28 2.73
47 48 0.655733 GCAAACCCGATACCGTCATG 59.344 55.000 0.00 0.00 0.00 3.07
49 50 2.833794 CAAACCCGATACCGTCATGAT 58.166 47.619 0.00 0.00 0.00 2.45
65 67 1.808411 TGATCCAAGGTTGAAGACGC 58.192 50.000 0.00 0.00 0.00 5.19
90 92 8.880768 CAAGATATGCAGTTGTTAGTTGTTAC 57.119 34.615 0.00 0.00 0.00 2.50
91 93 8.721478 CAAGATATGCAGTTGTTAGTTGTTACT 58.279 33.333 0.00 0.00 38.44 2.24
92 94 9.938280 AAGATATGCAGTTGTTAGTTGTTACTA 57.062 29.630 0.00 0.00 35.78 1.82
93 95 9.938280 AGATATGCAGTTGTTAGTTGTTACTAA 57.062 29.630 0.00 0.00 42.97 2.24
96 98 6.664515 TGCAGTTGTTAGTTGTTACTAATGC 58.335 36.000 11.54 11.54 45.80 3.56
97 99 6.485313 TGCAGTTGTTAGTTGTTACTAATGCT 59.515 34.615 16.15 7.49 45.80 3.79
98 100 6.797033 GCAGTTGTTAGTTGTTACTAATGCTG 59.203 38.462 11.32 13.16 45.80 4.41
99 101 7.298122 CAGTTGTTAGTTGTTACTAATGCTGG 58.702 38.462 0.00 0.00 45.80 4.85
100 102 5.873179 TGTTAGTTGTTACTAATGCTGGC 57.127 39.130 0.00 0.00 45.80 4.85
101 103 4.698304 TGTTAGTTGTTACTAATGCTGGCC 59.302 41.667 0.00 0.00 45.80 5.36
102 104 2.723273 AGTTGTTACTAATGCTGGCCC 58.277 47.619 0.00 0.00 31.21 5.80
103 105 1.749063 GTTGTTACTAATGCTGGCCCC 59.251 52.381 0.00 0.00 0.00 5.80
104 106 1.295020 TGTTACTAATGCTGGCCCCT 58.705 50.000 0.00 0.00 0.00 4.79
105 107 1.064758 TGTTACTAATGCTGGCCCCTG 60.065 52.381 0.00 0.00 0.00 4.45
106 108 1.064685 GTTACTAATGCTGGCCCCTGT 60.065 52.381 0.00 0.00 0.00 4.00
107 109 1.295020 TACTAATGCTGGCCCCTGTT 58.705 50.000 0.00 0.00 0.00 3.16
127 129 1.524863 TAGCTCCGCTAATCTCGCCC 61.525 60.000 0.00 0.00 38.27 6.13
130 132 2.658593 CCGCTAATCTCGCCCGTG 60.659 66.667 0.00 0.00 0.00 4.94
147 149 1.608025 CGTGCTACAAGAAGAAGGGCA 60.608 52.381 0.00 0.00 0.00 5.36
230 238 0.957888 AAGCAGAGGAGAAAAGCGCC 60.958 55.000 2.29 0.00 36.60 6.53
231 239 1.672356 GCAGAGGAGAAAAGCGCCA 60.672 57.895 2.29 0.00 39.21 5.69
232 240 1.028868 GCAGAGGAGAAAAGCGCCAT 61.029 55.000 2.29 0.00 39.21 4.40
271 282 2.494918 CACGTCGGTCCATCCTCC 59.505 66.667 0.00 0.00 0.00 4.30
276 287 2.186903 CGGTCCATCCTCCCGTTG 59.813 66.667 0.00 0.00 37.00 4.10
277 288 2.590092 GGTCCATCCTCCCGTTGG 59.410 66.667 0.00 0.00 33.18 3.77
278 289 1.993391 GGTCCATCCTCCCGTTGGA 60.993 63.158 0.00 0.00 37.91 3.53
279 290 1.559065 GGTCCATCCTCCCGTTGGAA 61.559 60.000 0.00 0.00 41.16 3.53
280 291 0.107654 GTCCATCCTCCCGTTGGAAG 60.108 60.000 0.00 0.00 41.16 3.46
321 336 3.172106 TTCCCACCTGCGAACCCA 61.172 61.111 0.00 0.00 0.00 4.51
378 403 1.004161 GGAGCTTTCCTTTCCTCTGCT 59.996 52.381 0.00 0.00 0.00 4.24
379 404 2.554124 GGAGCTTTCCTTTCCTCTGCTT 60.554 50.000 0.00 0.00 0.00 3.91
380 405 2.487372 GAGCTTTCCTTTCCTCTGCTTG 59.513 50.000 0.00 0.00 0.00 4.01
381 406 1.067985 GCTTTCCTTTCCTCTGCTTGC 60.068 52.381 0.00 0.00 0.00 4.01
382 407 2.512705 CTTTCCTTTCCTCTGCTTGCT 58.487 47.619 0.00 0.00 0.00 3.91
383 408 2.191128 TTCCTTTCCTCTGCTTGCTC 57.809 50.000 0.00 0.00 0.00 4.26
384 409 0.326264 TCCTTTCCTCTGCTTGCTCC 59.674 55.000 0.00 0.00 0.00 4.70
385 410 0.679321 CCTTTCCTCTGCTTGCTCCC 60.679 60.000 0.00 0.00 0.00 4.30
386 411 0.679321 CTTTCCTCTGCTTGCTCCCC 60.679 60.000 0.00 0.00 0.00 4.81
387 412 2.142292 TTTCCTCTGCTTGCTCCCCC 62.142 60.000 0.00 0.00 0.00 5.40
474 499 2.437716 CTGGTTGCCGGCGGTTAT 60.438 61.111 28.82 0.00 0.00 1.89
476 501 2.748647 GGTTGCCGGCGGTTATGT 60.749 61.111 28.82 0.00 0.00 2.29
477 502 2.757056 GGTTGCCGGCGGTTATGTC 61.757 63.158 28.82 10.09 0.00 3.06
478 503 1.743995 GTTGCCGGCGGTTATGTCT 60.744 57.895 28.82 0.00 0.00 3.41
480 505 1.302383 TTGCCGGCGGTTATGTCTTG 61.302 55.000 28.82 0.00 0.00 3.02
483 508 1.024579 CCGGCGGTTATGTCTTGCTT 61.025 55.000 19.97 0.00 0.00 3.91
485 510 1.165270 GGCGGTTATGTCTTGCTTGT 58.835 50.000 0.00 0.00 0.00 3.16
487 512 2.030274 GGCGGTTATGTCTTGCTTGTTT 60.030 45.455 0.00 0.00 0.00 2.83
494 524 1.949525 TGTCTTGCTTGTTTCTGCTCC 59.050 47.619 0.00 0.00 0.00 4.70
497 527 1.196354 CTTGCTTGTTTCTGCTCCGAG 59.804 52.381 0.00 0.00 0.00 4.63
572 602 0.672711 GGAAAAGGTCGCCGTAGCTT 60.673 55.000 0.00 0.00 38.80 3.74
678 930 3.781770 CTGGCCGCTGTCTCGATCC 62.782 68.421 0.00 0.00 0.00 3.36
895 1147 2.401766 CCAATGCGGCAGTGAGGAC 61.402 63.158 29.63 0.00 30.53 3.85
901 1153 1.079543 CGGCAGTGAGGACCTTCAG 60.080 63.158 0.00 0.00 0.00 3.02
915 1167 3.239627 TTCAGAGCGGAGGGAGGGT 62.240 63.158 0.00 0.00 0.00 4.34
933 1185 3.127533 GGAGCGCGCCAACTTGAT 61.128 61.111 30.33 6.10 0.00 2.57
970 1222 1.193650 CCGTGTATGGTTTGACGTGTG 59.806 52.381 0.00 0.00 0.00 3.82
1035 1287 1.801913 CAAGAAGGCCGTCGTCTCG 60.802 63.158 13.29 0.00 33.12 4.04
1168 1420 1.258676 GGTGGAGAAGAAGGACGACT 58.741 55.000 0.00 0.00 0.00 4.18
1467 1719 7.904977 GGGAATTCTTATAACGAAAACGGTTAC 59.095 37.037 5.23 0.00 33.10 2.50
1513 1767 5.869579 TGGTAGGCATCTTTATGGAATCTC 58.130 41.667 0.00 0.00 33.38 2.75
1515 1769 5.936956 GGTAGGCATCTTTATGGAATCTCAG 59.063 44.000 0.00 0.00 33.38 3.35
1962 2233 4.080582 ACATACAGCAGTGTATTTAGGGCA 60.081 41.667 0.00 0.00 45.99 5.36
2112 2383 2.426842 AGCTGGAAGGCTTGATTACC 57.573 50.000 3.46 0.00 39.86 2.85
2243 2514 8.792633 TCCATTTTGAAGGAAGTGTATTTGTAG 58.207 33.333 0.00 0.00 0.00 2.74
2574 2848 3.360867 TGTTGATTTGTGGAGTGTTGGT 58.639 40.909 0.00 0.00 0.00 3.67
2676 2950 6.992715 ACCAGTACAGCTCATTGTTTATATCC 59.007 38.462 0.00 0.00 32.56 2.59
2718 2992 5.104735 AGGTTGATATCTGAGGTTCCTTGTC 60.105 44.000 3.98 0.00 0.00 3.18
2798 3072 2.012673 GTCAAAGCCTCATTCGAGCAT 58.987 47.619 0.00 0.00 38.00 3.79
2825 3177 6.283694 TGGTCATGCTGAGTATTGAGTAATC 58.716 40.000 0.00 0.00 0.00 1.75
2980 3332 6.143438 GTGATTTCAATGAGCTTTCACTGTTG 59.857 38.462 0.00 0.00 31.61 3.33
3052 3404 4.766891 CCAGACATTACATGTTCCAACCTT 59.233 41.667 2.30 0.00 45.03 3.50
3106 3458 7.228507 GGTATTGTGTTCTATATGTCAATGGCA 59.771 37.037 0.00 0.00 0.00 4.92
3353 3705 1.888215 CATCATGCGCCCTTACATCT 58.112 50.000 4.18 0.00 0.00 2.90
3465 3817 1.888512 CCTGCCACTTTGTGCTACATT 59.111 47.619 0.00 0.00 31.34 2.71
3606 4159 9.524496 AAGCTATGCATTATTTCTGGATCATTA 57.476 29.630 3.54 0.00 0.00 1.90
3675 4228 8.673711 TGTTCATGCAACAATATTTACTACTCC 58.326 33.333 7.87 0.00 42.35 3.85
3676 4229 7.801716 TCATGCAACAATATTTACTACTCCC 57.198 36.000 0.00 0.00 0.00 4.30
3677 4230 7.573710 TCATGCAACAATATTTACTACTCCCT 58.426 34.615 0.00 0.00 0.00 4.20
3678 4231 7.715249 TCATGCAACAATATTTACTACTCCCTC 59.285 37.037 0.00 0.00 0.00 4.30
3679 4232 6.354130 TGCAACAATATTTACTACTCCCTCC 58.646 40.000 0.00 0.00 0.00 4.30
3680 4233 5.465724 GCAACAATATTTACTACTCCCTCCG 59.534 44.000 0.00 0.00 0.00 4.63
3681 4234 6.579865 CAACAATATTTACTACTCCCTCCGT 58.420 40.000 0.00 0.00 0.00 4.69
3682 4235 6.402456 ACAATATTTACTACTCCCTCCGTC 57.598 41.667 0.00 0.00 0.00 4.79
3683 4236 5.303845 ACAATATTTACTACTCCCTCCGTCC 59.696 44.000 0.00 0.00 0.00 4.79
3684 4237 2.149973 TTTACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
3685 4238 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3686 4239 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
3687 4240 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3688 4241 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3689 4242 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3690 4243 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3691 4244 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3692 4245 1.344763 CTCCCTCCGTCCCATAATGTC 59.655 57.143 0.00 0.00 0.00 3.06
3693 4246 1.128200 CCCTCCGTCCCATAATGTCA 58.872 55.000 0.00 0.00 0.00 3.58
3694 4247 1.070758 CCCTCCGTCCCATAATGTCAG 59.929 57.143 0.00 0.00 0.00 3.51
3695 4248 2.039418 CCTCCGTCCCATAATGTCAGA 58.961 52.381 0.00 0.00 0.00 3.27
3696 4249 2.434336 CCTCCGTCCCATAATGTCAGAA 59.566 50.000 0.00 0.00 0.00 3.02
3697 4250 3.118408 CCTCCGTCCCATAATGTCAGAAA 60.118 47.826 0.00 0.00 0.00 2.52
3698 4251 4.513442 CTCCGTCCCATAATGTCAGAAAA 58.487 43.478 0.00 0.00 0.00 2.29
3699 4252 4.258543 TCCGTCCCATAATGTCAGAAAAC 58.741 43.478 0.00 0.00 0.00 2.43
3700 4253 3.063452 CCGTCCCATAATGTCAGAAAACG 59.937 47.826 0.00 0.00 0.00 3.60
3701 4254 3.682858 CGTCCCATAATGTCAGAAAACGT 59.317 43.478 0.00 0.00 0.00 3.99
3702 4255 4.201685 CGTCCCATAATGTCAGAAAACGTC 60.202 45.833 0.00 0.00 0.00 4.34
3703 4256 4.935808 GTCCCATAATGTCAGAAAACGTCT 59.064 41.667 0.00 0.00 36.88 4.18
3704 4257 5.411669 GTCCCATAATGTCAGAAAACGTCTT 59.588 40.000 0.00 0.00 32.70 3.01
3705 4258 6.592607 GTCCCATAATGTCAGAAAACGTCTTA 59.407 38.462 0.00 0.00 32.70 2.10
3706 4259 6.592607 TCCCATAATGTCAGAAAACGTCTTAC 59.407 38.462 0.00 0.00 32.70 2.34
3707 4260 6.370442 CCCATAATGTCAGAAAACGTCTTACA 59.630 38.462 0.00 0.00 43.08 2.41
3713 4266 7.359262 TGTCAGAAAACGTCTTACATTATGG 57.641 36.000 0.00 0.00 35.89 2.74
3714 4267 6.370442 TGTCAGAAAACGTCTTACATTATGGG 59.630 38.462 0.00 0.00 35.89 4.00
3715 4268 6.592607 GTCAGAAAACGTCTTACATTATGGGA 59.407 38.462 0.00 0.00 32.70 4.37
3716 4269 6.592607 TCAGAAAACGTCTTACATTATGGGAC 59.407 38.462 0.00 1.75 32.70 4.46
3719 4272 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3720 4273 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3721 4274 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3722 4275 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3723 4276 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3724 4277 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3725 4278 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3726 4279 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3850 4405 2.500098 TCACTTATAGTGCTGGTGTCCC 59.500 50.000 1.98 0.00 45.54 4.46
3932 4487 0.254178 GTCCAGTGGCATCATGTCCT 59.746 55.000 3.51 0.00 0.00 3.85
4107 4662 6.653320 TGGCTTGTCGAATCAAACTACTAAAT 59.347 34.615 0.00 0.00 0.00 1.40
4310 4865 9.710979 TGTTTCAGAAAATACGTTAGAAACTTG 57.289 29.630 13.92 2.14 42.11 3.16
4371 4930 6.405842 GGGTATGCTTCATAAGTTTCAAAGGG 60.406 42.308 0.00 0.00 0.00 3.95
4401 4960 6.460123 CCAGCACTACAACATTTTTCTTGTCT 60.460 38.462 0.00 0.00 0.00 3.41
4493 5052 3.633986 ACTTTTCAGAAGAAAGGCCAGTG 59.366 43.478 5.01 0.00 44.03 3.66
4657 5218 6.506500 ACAGTTGCTCTATTCTTTTGATGG 57.493 37.500 0.00 0.00 0.00 3.51
4690 5251 6.369065 ACTCGTTAAAGCTCTTATGTCCTTTG 59.631 38.462 0.00 0.00 0.00 2.77
4836 5397 1.207329 AGAAAGGGGTCGTCATGCTAC 59.793 52.381 0.00 0.00 0.00 3.58
4909 5470 3.376078 AGTGGCTTTGCATGGGCG 61.376 61.111 0.00 0.00 45.35 6.13
4978 5539 3.616956 TCAAGAGGCGAATTCACTGAT 57.383 42.857 6.22 0.00 0.00 2.90
5031 5592 3.347216 AGAACATTGGATTGGAGGAACG 58.653 45.455 0.00 0.00 0.00 3.95
5032 5593 1.463674 ACATTGGATTGGAGGAACGC 58.536 50.000 0.00 0.00 0.00 4.84
5046 5607 0.864455 GAACGCCATAGCAGAGATGC 59.136 55.000 0.00 0.00 39.83 3.91
5071 5632 2.224185 TGTAGCACGTGTCAACTCCAAT 60.224 45.455 18.38 0.00 0.00 3.16
5155 5716 4.568359 CGTCCAGATTCATTTGATTCTCGT 59.432 41.667 2.75 0.00 33.84 4.18
5212 5773 1.047002 ATCTTGGGGATGCTCTCTCG 58.953 55.000 0.00 0.00 32.69 4.04
5302 5863 7.255277 GGAAGATGGAAGTAATTGGTGCTATTC 60.255 40.741 0.00 0.00 0.00 1.75
5354 5915 5.492524 AGGAGAAAGGGTTGAATATTCAGGA 59.507 40.000 17.28 2.07 38.61 3.86
5476 6037 8.951787 AATGTGGTTTCATAAATCAATGGATG 57.048 30.769 0.00 0.00 32.40 3.51
5548 6109 6.665248 TGTTCTTTCTCTGTATGGAGATCTCA 59.335 38.462 23.85 10.74 41.29 3.27
5571 6132 7.402054 TCATAATTGTGGGTCAGACATTTACT 58.598 34.615 2.17 0.00 0.00 2.24
5582 6143 5.050363 GTCAGACATTTACTGAAGCGTCAAA 60.050 40.000 3.39 0.00 44.29 2.69
5671 6234 7.739498 TTTATCCAACTGTTGTAGTTCTTCC 57.261 36.000 18.38 0.00 46.55 3.46
5674 6237 3.251004 CCAACTGTTGTAGTTCTTCCTGC 59.749 47.826 18.38 0.00 46.55 4.85
5708 6271 5.418676 ACCTGAAAGAAACACCACATTTTG 58.581 37.500 0.00 0.00 34.07 2.44
5709 6272 5.186797 ACCTGAAAGAAACACCACATTTTGA 59.813 36.000 0.00 0.00 34.07 2.69
5711 6274 6.762661 CCTGAAAGAAACACCACATTTTGATT 59.237 34.615 0.00 0.00 34.07 2.57
5712 6275 7.925483 CCTGAAAGAAACACCACATTTTGATTA 59.075 33.333 0.00 0.00 34.07 1.75
5744 6307 9.851686 ATATACAAGATTGCAAAAGATACCTGA 57.148 29.630 1.71 0.00 0.00 3.86
5747 6310 7.989826 ACAAGATTGCAAAAGATACCTGATAC 58.010 34.615 1.71 0.00 0.00 2.24
5748 6311 7.067494 ACAAGATTGCAAAAGATACCTGATACC 59.933 37.037 1.71 0.00 0.00 2.73
5750 6313 4.853468 TGCAAAAGATACCTGATACCCA 57.147 40.909 0.00 0.00 0.00 4.51
5884 6491 7.343057 GGGGAAATATTTTCAAGAATCTGGTCT 59.657 37.037 8.74 0.00 0.00 3.85
5965 6648 4.403734 TCCCTTGAACTGTTATGGTTTCC 58.596 43.478 0.00 0.00 0.00 3.13
5975 6659 6.935167 ACTGTTATGGTTTCCATTTTCCATC 58.065 36.000 6.59 0.00 42.23 3.51
6000 6684 6.401260 CGCATCTGCTTCTTGATCTGATAATC 60.401 42.308 0.09 0.00 39.32 1.75
6005 6689 7.494952 TCTGCTTCTTGATCTGATAATCTTGTG 59.505 37.037 0.00 0.00 0.00 3.33
6017 6701 8.043113 TCTGATAATCTTGTGCTATGACTTTGT 58.957 33.333 0.00 0.00 0.00 2.83
6027 6736 5.583854 GTGCTATGACTTTGTGTCTGATGAT 59.416 40.000 0.00 0.00 45.54 2.45
6028 6737 5.814188 TGCTATGACTTTGTGTCTGATGATC 59.186 40.000 0.00 0.00 45.54 2.92
6132 6842 2.093711 TGCACATGTACATAGCGAAGGT 60.094 45.455 20.84 7.27 44.89 3.50
6136 6846 0.179121 TGTACATAGCGAAGGTGGCG 60.179 55.000 0.00 0.00 40.22 5.69
6222 6939 0.598562 GACTCGAAGACCACTGCTGA 59.401 55.000 0.00 0.00 0.00 4.26
6287 7004 2.103263 GCATCCACCGGAGAATAACTCT 59.897 50.000 9.46 0.00 44.37 3.24
6292 7009 2.594541 CGGAGAATAACTCTGGCGC 58.405 57.895 0.00 0.00 45.42 6.53
6339 7056 8.931385 GCTATGCCATTTCAATTTTCTTCTTA 57.069 30.769 0.00 0.00 0.00 2.10
6385 7102 1.438651 TAACAGCTGACGAATGTGGC 58.561 50.000 23.35 0.00 0.00 5.01
6388 7105 1.446792 AGCTGACGAATGTGGCGAG 60.447 57.895 0.00 0.00 0.00 5.03
6417 7134 0.380378 TTGCGTTGAGTTGAACCAGC 59.620 50.000 0.00 0.00 0.00 4.85
6535 7257 0.683973 AGCACCTCTCACTCACTTGG 59.316 55.000 0.00 0.00 0.00 3.61
6558 7280 5.047021 GGGACGATGGATATTTCTGATCTGA 60.047 44.000 0.00 0.00 0.00 3.27
6580 7302 3.863142 TTAGCACTTTCCTCGGTACTC 57.137 47.619 0.00 0.00 0.00 2.59
6581 7303 1.629043 AGCACTTTCCTCGGTACTCA 58.371 50.000 0.00 0.00 0.00 3.41
6583 7305 2.028930 AGCACTTTCCTCGGTACTCAAG 60.029 50.000 0.00 0.00 0.00 3.02
6584 7306 2.029290 GCACTTTCCTCGGTACTCAAGA 60.029 50.000 0.00 0.00 0.00 3.02
6585 7307 3.839293 CACTTTCCTCGGTACTCAAGAG 58.161 50.000 0.00 0.00 0.00 2.85
6586 7308 3.506455 CACTTTCCTCGGTACTCAAGAGA 59.494 47.826 3.73 0.00 34.13 3.10
6587 7309 4.022242 CACTTTCCTCGGTACTCAAGAGAA 60.022 45.833 3.73 0.00 34.13 2.87
6588 7310 4.587684 ACTTTCCTCGGTACTCAAGAGAAA 59.412 41.667 3.73 0.00 34.13 2.52
6589 7311 4.516365 TTCCTCGGTACTCAAGAGAAAC 57.484 45.455 3.73 1.92 34.13 2.78
6590 7312 3.764218 TCCTCGGTACTCAAGAGAAACT 58.236 45.455 3.73 0.00 34.13 2.66
6591 7313 4.150359 TCCTCGGTACTCAAGAGAAACTT 58.850 43.478 3.73 0.00 39.70 2.66
6592 7314 4.587684 TCCTCGGTACTCAAGAGAAACTTT 59.412 41.667 3.73 0.00 36.61 2.66
6593 7315 4.686554 CCTCGGTACTCAAGAGAAACTTTG 59.313 45.833 3.73 0.00 36.61 2.77
6594 7316 5.509163 CCTCGGTACTCAAGAGAAACTTTGA 60.509 44.000 3.73 0.00 36.61 2.69
6595 7317 5.909477 TCGGTACTCAAGAGAAACTTTGAA 58.091 37.500 3.73 0.00 36.61 2.69
6596 7318 5.751990 TCGGTACTCAAGAGAAACTTTGAAC 59.248 40.000 3.73 0.00 36.61 3.18
6597 7319 5.753921 CGGTACTCAAGAGAAACTTTGAACT 59.246 40.000 3.73 0.00 36.61 3.01
6598 7320 6.074249 CGGTACTCAAGAGAAACTTTGAACTC 60.074 42.308 3.73 0.00 36.61 3.01
6599 7321 6.987404 GGTACTCAAGAGAAACTTTGAACTCT 59.013 38.462 3.73 0.00 40.75 3.24
6600 7322 6.917217 ACTCAAGAGAAACTTTGAACTCTG 57.083 37.500 3.73 0.00 39.27 3.35
6601 7323 5.819901 ACTCAAGAGAAACTTTGAACTCTGG 59.180 40.000 3.73 0.00 39.27 3.86
6602 7324 4.576463 TCAAGAGAAACTTTGAACTCTGGC 59.424 41.667 0.00 0.00 39.27 4.85
6603 7325 3.134458 AGAGAAACTTTGAACTCTGGCG 58.866 45.455 0.00 0.00 38.14 5.69
6604 7326 1.604278 AGAAACTTTGAACTCTGGCGC 59.396 47.619 0.00 0.00 0.00 6.53
6605 7327 1.604278 GAAACTTTGAACTCTGGCGCT 59.396 47.619 7.64 0.00 0.00 5.92
6606 7328 0.947244 AACTTTGAACTCTGGCGCTG 59.053 50.000 7.64 0.11 0.00 5.18
6607 7329 0.886490 ACTTTGAACTCTGGCGCTGG 60.886 55.000 7.64 0.00 0.00 4.85
6608 7330 0.886490 CTTTGAACTCTGGCGCTGGT 60.886 55.000 7.64 0.00 0.00 4.00
6609 7331 1.165907 TTTGAACTCTGGCGCTGGTG 61.166 55.000 7.64 4.03 0.00 4.17
6610 7332 3.426568 GAACTCTGGCGCTGGTGC 61.427 66.667 7.64 0.00 0.00 5.01
6611 7333 4.254709 AACTCTGGCGCTGGTGCA 62.255 61.111 7.64 0.00 39.64 4.57
6612 7334 4.694233 ACTCTGGCGCTGGTGCAG 62.694 66.667 7.64 5.73 39.64 4.41
6623 7345 2.730094 GGTGCAGCAACCAAGGTG 59.270 61.111 11.86 0.00 40.22 4.00
6624 7346 2.730094 GTGCAGCAACCAAGGTGG 59.270 61.111 0.00 0.00 45.02 4.61
6634 7356 4.517663 CAAGGTGGTGCCATGGAA 57.482 55.556 18.40 0.00 40.61 3.53
6635 7357 2.269978 CAAGGTGGTGCCATGGAAG 58.730 57.895 18.40 0.00 40.61 3.46
6636 7358 1.077265 AAGGTGGTGCCATGGAAGG 59.923 57.895 18.40 0.00 40.61 3.46
6637 7359 1.434513 AAGGTGGTGCCATGGAAGGA 61.435 55.000 18.40 0.00 40.61 3.36
6638 7360 1.379044 GGTGGTGCCATGGAAGGAG 60.379 63.158 18.40 0.00 37.17 3.69
6639 7361 1.379044 GTGGTGCCATGGAAGGAGG 60.379 63.158 18.40 0.00 0.00 4.30
6640 7362 2.276740 GGTGCCATGGAAGGAGGG 59.723 66.667 18.40 0.00 0.00 4.30
6641 7363 2.440980 GTGCCATGGAAGGAGGGC 60.441 66.667 18.40 0.00 46.58 5.19
6644 7366 4.883354 CCATGGAAGGAGGGCGCC 62.883 72.222 21.18 21.18 0.00 6.53
6645 7367 4.883354 CATGGAAGGAGGGCGCCC 62.883 72.222 39.29 39.29 0.00 6.13
6655 7377 3.878667 GGGCGCCCCTAAGAGCAT 61.879 66.667 36.64 0.00 41.34 3.79
6656 7378 2.281139 GGCGCCCCTAAGAGCATC 60.281 66.667 18.11 0.00 0.00 3.91
6689 7411 2.124901 CGCCCATCGCCTGGTTTA 60.125 61.111 0.00 0.00 44.30 2.01
6796 7518 2.949714 CGACTCTCGCACAAACAAAT 57.050 45.000 0.00 0.00 31.14 2.32
6798 7520 4.584029 CGACTCTCGCACAAACAAATAT 57.416 40.909 0.00 0.00 31.14 1.28
6799 7521 4.326205 CGACTCTCGCACAAACAAATATG 58.674 43.478 0.00 0.00 31.14 1.78
6800 7522 4.083581 ACTCTCGCACAAACAAATATGC 57.916 40.909 0.00 0.00 34.66 3.14
6801 7523 3.501828 ACTCTCGCACAAACAAATATGCA 59.498 39.130 0.00 0.00 37.97 3.96
6810 7533 6.578172 GCACAAACAAATATGCAATCCAAAAC 59.422 34.615 0.00 0.00 38.00 2.43
6941 7664 9.549509 GCAATAAAACACAACAAATAGTATCGA 57.450 29.630 0.00 0.00 0.00 3.59
6944 7667 7.499321 AAAACACAACAAATAGTATCGACCA 57.501 32.000 0.00 0.00 0.00 4.02
6945 7668 7.681939 AAACACAACAAATAGTATCGACCAT 57.318 32.000 0.00 0.00 0.00 3.55
6946 7669 8.780846 AAACACAACAAATAGTATCGACCATA 57.219 30.769 0.00 0.00 0.00 2.74
6947 7670 7.766219 ACACAACAAATAGTATCGACCATAC 57.234 36.000 0.00 0.00 38.16 2.39
6948 7671 6.474427 ACACAACAAATAGTATCGACCATACG 59.526 38.462 0.00 0.00 42.23 3.06
6949 7672 5.981315 ACAACAAATAGTATCGACCATACGG 59.019 40.000 0.00 0.00 42.23 4.02
6950 7673 4.553323 ACAAATAGTATCGACCATACGGC 58.447 43.478 0.00 0.00 42.23 5.68
6952 7675 5.474532 ACAAATAGTATCGACCATACGGCTA 59.525 40.000 0.00 0.00 42.23 3.93
6953 7676 6.152323 ACAAATAGTATCGACCATACGGCTAT 59.848 38.462 0.00 0.00 42.23 2.97
6954 7677 6.770746 AATAGTATCGACCATACGGCTATT 57.229 37.500 0.00 0.00 42.23 1.73
6956 7679 8.461249 AATAGTATCGACCATACGGCTATTAT 57.539 34.615 0.00 0.00 42.23 1.28
6985 8143 6.973474 CCGCTAGATAATAGCCATAGTTGTAC 59.027 42.308 0.00 0.00 37.26 2.90
6991 8149 2.857592 AGCCATAGTTGTACGTACGG 57.142 50.000 21.06 14.60 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.798087 GGTATCGGGTTTGCAACGG 59.202 57.895 0.00 0.00 0.00 4.44
28 29 0.655733 CATGACGGTATCGGGTTTGC 59.344 55.000 0.00 0.00 41.39 3.68
36 37 3.753294 ACCTTGGATCATGACGGTATC 57.247 47.619 0.00 0.00 0.00 2.24
39 40 1.628340 TCAACCTTGGATCATGACGGT 59.372 47.619 0.00 0.00 0.00 4.83
41 42 3.372206 GTCTTCAACCTTGGATCATGACG 59.628 47.826 0.00 0.00 0.00 4.35
47 48 1.808411 TGCGTCTTCAACCTTGGATC 58.192 50.000 0.00 0.00 0.00 3.36
49 50 1.140052 TCTTGCGTCTTCAACCTTGGA 59.860 47.619 0.00 0.00 0.00 3.53
65 67 8.721478 AGTAACAACTAACAACTGCATATCTTG 58.279 33.333 0.00 0.00 0.00 3.02
78 80 4.698304 GGCCAGCATTAGTAACAACTAACA 59.302 41.667 0.00 0.00 35.34 2.41
82 84 2.620627 GGGGCCAGCATTAGTAACAACT 60.621 50.000 4.39 0.00 0.00 3.16
83 85 1.749063 GGGGCCAGCATTAGTAACAAC 59.251 52.381 4.39 0.00 0.00 3.32
85 87 1.064758 CAGGGGCCAGCATTAGTAACA 60.065 52.381 4.39 0.00 0.00 2.41
86 88 1.064685 ACAGGGGCCAGCATTAGTAAC 60.065 52.381 4.39 0.00 0.00 2.50
88 90 1.295020 AACAGGGGCCAGCATTAGTA 58.705 50.000 4.39 0.00 0.00 1.82
89 91 0.409484 AAACAGGGGCCAGCATTAGT 59.591 50.000 4.39 0.00 0.00 2.24
90 92 2.301346 CTAAACAGGGGCCAGCATTAG 58.699 52.381 4.39 4.98 0.00 1.73
91 93 1.684869 GCTAAACAGGGGCCAGCATTA 60.685 52.381 4.39 0.00 32.46 1.90
92 94 0.972471 GCTAAACAGGGGCCAGCATT 60.972 55.000 4.39 0.00 32.46 3.56
93 95 1.380380 GCTAAACAGGGGCCAGCAT 60.380 57.895 4.39 0.00 32.46 3.79
94 96 2.035626 GCTAAACAGGGGCCAGCA 59.964 61.111 4.39 0.00 32.46 4.41
95 97 1.750780 GAGCTAAACAGGGGCCAGC 60.751 63.158 4.39 4.20 0.00 4.85
96 98 1.077429 GGAGCTAAACAGGGGCCAG 60.077 63.158 4.39 0.00 0.00 4.85
97 99 2.966732 CGGAGCTAAACAGGGGCCA 61.967 63.158 4.39 0.00 0.00 5.36
98 100 2.124695 CGGAGCTAAACAGGGGCC 60.125 66.667 0.00 0.00 0.00 5.80
127 129 1.079503 GCCCTTCTTCTTGTAGCACG 58.920 55.000 0.00 0.00 0.00 5.34
130 132 1.090728 GCTGCCCTTCTTCTTGTAGC 58.909 55.000 0.00 0.00 0.00 3.58
230 238 0.809385 ACTGGTGGTAGACGACGATG 59.191 55.000 0.00 0.00 0.00 3.84
231 239 1.093159 GACTGGTGGTAGACGACGAT 58.907 55.000 0.00 0.00 0.00 3.73
232 240 0.957395 GGACTGGTGGTAGACGACGA 60.957 60.000 0.00 0.00 0.00 4.20
271 282 1.002502 GGTCCTTCCCTTCCAACGG 60.003 63.158 0.00 0.00 0.00 4.44
276 287 3.447586 GCTTTAAATGGTCCTTCCCTTCC 59.552 47.826 0.00 0.00 34.77 3.46
277 288 3.447586 GGCTTTAAATGGTCCTTCCCTTC 59.552 47.826 0.00 0.00 34.77 3.46
278 289 3.441101 GGCTTTAAATGGTCCTTCCCTT 58.559 45.455 0.00 0.00 34.77 3.95
279 290 2.292257 GGGCTTTAAATGGTCCTTCCCT 60.292 50.000 0.00 0.00 34.77 4.20
280 291 2.108168 GGGCTTTAAATGGTCCTTCCC 58.892 52.381 0.00 0.00 34.77 3.97
350 365 0.922626 AAGGAAAGCTCCCCTGGATC 59.077 55.000 7.53 0.00 43.64 3.36
386 411 2.807036 TTTATTTGGGGCGGGGGTGG 62.807 60.000 0.00 0.00 0.00 4.61
387 412 0.689412 ATTTATTTGGGGCGGGGGTG 60.689 55.000 0.00 0.00 0.00 4.61
394 419 0.750249 CCACGGGATTTATTTGGGGC 59.250 55.000 0.00 0.00 0.00 5.80
457 482 2.437716 ATAACCGCCGGCAACCAG 60.438 61.111 28.98 9.56 0.00 4.00
458 483 2.748251 CATAACCGCCGGCAACCA 60.748 61.111 28.98 8.93 0.00 3.67
469 494 4.022849 AGCAGAAACAAGCAAGACATAACC 60.023 41.667 0.00 0.00 0.00 2.85
472 497 3.753272 GGAGCAGAAACAAGCAAGACATA 59.247 43.478 0.00 0.00 0.00 2.29
473 498 2.555757 GGAGCAGAAACAAGCAAGACAT 59.444 45.455 0.00 0.00 0.00 3.06
474 499 1.949525 GGAGCAGAAACAAGCAAGACA 59.050 47.619 0.00 0.00 0.00 3.41
476 501 1.202639 TCGGAGCAGAAACAAGCAAGA 60.203 47.619 0.00 0.00 0.00 3.02
477 502 1.196354 CTCGGAGCAGAAACAAGCAAG 59.804 52.381 0.00 0.00 0.00 4.01
478 503 1.202639 TCTCGGAGCAGAAACAAGCAA 60.203 47.619 0.00 0.00 0.00 3.91
480 505 1.512926 TTCTCGGAGCAGAAACAAGC 58.487 50.000 0.00 0.00 29.01 4.01
483 508 1.996292 CGATTCTCGGAGCAGAAACA 58.004 50.000 0.00 0.00 35.99 2.83
506 536 0.727398 GATCAAGAAACCGCCGGAAG 59.273 55.000 11.71 0.00 0.00 3.46
509 539 2.461110 CGGATCAAGAAACCGCCGG 61.461 63.158 0.00 0.00 40.19 6.13
572 602 1.877443 CGCGAGGGGAAAAGAAAGAAA 59.123 47.619 0.00 0.00 0.00 2.52
895 1147 2.430610 CCTCCCTCCGCTCTGAAGG 61.431 68.421 0.00 0.00 0.00 3.46
901 1153 4.779733 TCCACCCTCCCTCCGCTC 62.780 72.222 0.00 0.00 0.00 5.03
915 1167 3.899981 ATCAAGTTGGCGCGCTCCA 62.900 57.895 32.29 16.70 0.00 3.86
1452 1704 5.560567 GCAAATCCAGTAACCGTTTTCGTTA 60.561 40.000 0.00 0.00 42.35 3.18
1455 1707 3.058501 AGCAAATCCAGTAACCGTTTTCG 60.059 43.478 0.00 0.00 43.67 3.46
1467 1719 5.587388 ATCCACACAAATAGCAAATCCAG 57.413 39.130 0.00 0.00 0.00 3.86
1522 1776 9.838339 AGTACGGTACTATACTAACTGTAACAT 57.162 33.333 18.80 0.00 36.88 2.71
1962 2233 1.583495 TTCCAGTGTCGAGATCGCGT 61.583 55.000 18.44 0.00 39.60 6.01
2112 2383 1.069823 AGGCTGCATGATAACCGAGAG 59.930 52.381 0.50 0.00 0.00 3.20
2172 2443 0.771127 TGTCAGGGGAGGAACAAAGG 59.229 55.000 0.00 0.00 0.00 3.11
2243 2514 0.323957 AAGTTGTACGGAAGGAGGGC 59.676 55.000 0.00 0.00 0.00 5.19
2574 2848 1.231221 ACAACTCGGCAAATACGCAA 58.769 45.000 0.00 0.00 0.00 4.85
2754 3028 1.497309 CCCCAAAGAGCCCACACCTA 61.497 60.000 0.00 0.00 0.00 3.08
2788 3062 2.350484 GCATGACCATGATGCTCGAATG 60.350 50.000 13.67 0.00 42.52 2.67
2798 3072 4.162888 ACTCAATACTCAGCATGACCATGA 59.837 41.667 13.67 0.00 42.56 3.07
2941 3293 9.072375 TCATTGAAATCACAACCACAGTTATTA 57.928 29.630 0.00 0.00 33.27 0.98
2960 3312 3.243501 GGCAACAGTGAAAGCTCATTGAA 60.244 43.478 0.00 0.00 40.76 2.69
2980 3332 4.773323 AAAGCAGAAAACTAGATGTGGC 57.227 40.909 0.00 0.00 0.00 5.01
3052 3404 3.459598 AGTCAGCAAGCTATAATGGGGAA 59.540 43.478 0.00 0.00 0.00 3.97
3353 3705 2.037641 CGCATGATGGGATCTTACCTCA 59.962 50.000 3.03 0.00 31.21 3.86
3452 3804 4.275689 TGGTGAACTCAATGTAGCACAAAG 59.724 41.667 0.00 0.00 36.45 2.77
3465 3817 8.642432 CATAGGATAGAATTAGTGGTGAACTCA 58.358 37.037 0.00 0.00 40.56 3.41
3533 3890 4.388773 TGCTGTTTCTTAACTGTATGAGCG 59.611 41.667 0.00 0.00 36.08 5.03
3571 3928 9.565090 AGAAATAATGCATAGCTTGAACATCTA 57.435 29.630 0.00 0.00 0.00 1.98
3664 4217 2.023695 TGGGACGGAGGGAGTAGTAAAT 60.024 50.000 0.00 0.00 0.00 1.40
3672 4225 1.344763 GACATTATGGGACGGAGGGAG 59.655 57.143 0.00 0.00 0.00 4.30
3673 4226 1.343580 TGACATTATGGGACGGAGGGA 60.344 52.381 0.00 0.00 0.00 4.20
3674 4227 1.070758 CTGACATTATGGGACGGAGGG 59.929 57.143 0.00 0.00 0.00 4.30
3675 4228 2.039418 TCTGACATTATGGGACGGAGG 58.961 52.381 0.00 0.00 0.00 4.30
3676 4229 3.819564 TTCTGACATTATGGGACGGAG 57.180 47.619 0.00 0.00 0.00 4.63
3677 4230 4.258543 GTTTTCTGACATTATGGGACGGA 58.741 43.478 0.00 0.00 0.00 4.69
3678 4231 3.063452 CGTTTTCTGACATTATGGGACGG 59.937 47.826 0.00 0.00 0.00 4.79
3679 4232 3.682858 ACGTTTTCTGACATTATGGGACG 59.317 43.478 0.00 0.00 0.00 4.79
3680 4233 4.935808 AGACGTTTTCTGACATTATGGGAC 59.064 41.667 0.00 0.00 31.12 4.46
3681 4234 5.160607 AGACGTTTTCTGACATTATGGGA 57.839 39.130 0.00 0.00 31.12 4.37
3682 4235 5.880054 AAGACGTTTTCTGACATTATGGG 57.120 39.130 0.00 0.00 33.46 4.00
3683 4236 7.359262 TGTAAGACGTTTTCTGACATTATGG 57.641 36.000 0.00 0.00 40.44 2.74
3690 4243 6.592607 TCCCATAATGTAAGACGTTTTCTGAC 59.407 38.462 0.00 0.00 36.30 3.51
3691 4244 6.592607 GTCCCATAATGTAAGACGTTTTCTGA 59.407 38.462 0.00 0.00 33.46 3.27
3692 4245 6.455113 CGTCCCATAATGTAAGACGTTTTCTG 60.455 42.308 0.00 0.00 43.89 3.02
3693 4246 5.579511 CGTCCCATAATGTAAGACGTTTTCT 59.420 40.000 0.00 0.00 43.89 2.52
3694 4247 5.220529 CCGTCCCATAATGTAAGACGTTTTC 60.221 44.000 9.63 0.00 46.62 2.29
3695 4248 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3696 4249 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3697 4250 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3698 4251 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3700 4253 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3701 4254 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3702 4255 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3703 4256 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3704 4257 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3705 4258 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3706 4259 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3707 4260 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3708 4261 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
3709 4262 4.687262 ATAATACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
3710 4263 3.562108 ATAATACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
3711 4264 2.969950 CAATAATACTCCCTCCGTCCCA 59.030 50.000 0.00 0.00 0.00 4.37
3712 4265 2.970640 ACAATAATACTCCCTCCGTCCC 59.029 50.000 0.00 0.00 0.00 4.46
3713 4266 4.377897 CAACAATAATACTCCCTCCGTCC 58.622 47.826 0.00 0.00 0.00 4.79
3714 4267 4.141779 ACCAACAATAATACTCCCTCCGTC 60.142 45.833 0.00 0.00 0.00 4.79
3715 4268 3.778629 ACCAACAATAATACTCCCTCCGT 59.221 43.478 0.00 0.00 0.00 4.69
3716 4269 4.127171 CACCAACAATAATACTCCCTCCG 58.873 47.826 0.00 0.00 0.00 4.63
3717 4270 4.881850 CACACCAACAATAATACTCCCTCC 59.118 45.833 0.00 0.00 0.00 4.30
3718 4271 5.585047 GTCACACCAACAATAATACTCCCTC 59.415 44.000 0.00 0.00 0.00 4.30
3719 4272 5.250774 AGTCACACCAACAATAATACTCCCT 59.749 40.000 0.00 0.00 0.00 4.20
3720 4273 5.497474 AGTCACACCAACAATAATACTCCC 58.503 41.667 0.00 0.00 0.00 4.30
3721 4274 9.477484 CTATAGTCACACCAACAATAATACTCC 57.523 37.037 0.00 0.00 0.00 3.85
3722 4275 8.979574 GCTATAGTCACACCAACAATAATACTC 58.020 37.037 0.84 0.00 0.00 2.59
3723 4276 8.705594 AGCTATAGTCACACCAACAATAATACT 58.294 33.333 0.84 0.00 0.00 2.12
3724 4277 8.888579 AGCTATAGTCACACCAACAATAATAC 57.111 34.615 0.84 0.00 0.00 1.89
3725 4278 9.325198 CAAGCTATAGTCACACCAACAATAATA 57.675 33.333 0.84 0.00 0.00 0.98
3726 4279 7.201732 GCAAGCTATAGTCACACCAACAATAAT 60.202 37.037 0.84 0.00 0.00 1.28
3781 4334 6.796785 AAACCTAAGCATTTCATAGCCATT 57.203 33.333 0.00 0.00 0.00 3.16
3932 4487 4.671831 TGCATGGGAAGGAAGTCAAATTA 58.328 39.130 0.00 0.00 0.00 1.40
4371 4930 1.755179 ATGTTGTAGTGCTGGATGGC 58.245 50.000 0.00 0.00 0.00 4.40
4401 4960 6.863645 TGTTCGAATGTTTTTGTTCAACTTCA 59.136 30.769 0.00 0.00 0.00 3.02
4657 5218 2.475487 GAGCTTTAACGAGTGGTGTCAC 59.525 50.000 0.00 0.00 43.93 3.67
4690 5251 4.906618 TGGTTTTGGACTCCTGAAGATAC 58.093 43.478 0.00 0.00 0.00 2.24
4836 5397 2.309528 TTCCTCCCGTGAATCATTCG 57.690 50.000 0.00 0.00 0.00 3.34
4936 5497 6.120220 TGAACTAGATCTGTTCCGTGATCTA 58.880 40.000 23.52 10.88 45.09 1.98
4978 5539 4.018870 TGTGGCTTATTGTCCCAATCTACA 60.019 41.667 0.00 0.00 0.00 2.74
5031 5592 0.954449 ATGCGCATCTCTGCTATGGC 60.954 55.000 19.28 0.00 46.65 4.40
5032 5593 0.796927 CATGCGCATCTCTGCTATGG 59.203 55.000 22.51 0.64 46.65 2.74
5046 5607 0.179250 GTTGACACGTGCTACATGCG 60.179 55.000 17.22 0.00 46.63 4.73
5071 5632 1.379176 CTCCTGAGGCTCTCGGACA 60.379 63.158 16.72 0.95 39.05 4.02
5155 5716 5.808366 AATTCTGAGAGTGGTAAGTGTCA 57.192 39.130 0.00 0.00 0.00 3.58
5212 5773 5.447818 CCTCACCTTCATGCTATTTTTCGAC 60.448 44.000 0.00 0.00 0.00 4.20
5292 5853 3.007506 TCCTGAAGTTTCGAATAGCACCA 59.992 43.478 0.00 0.00 0.00 4.17
5302 5863 1.137513 GTGGTCGTCCTGAAGTTTCG 58.862 55.000 0.00 0.00 34.23 3.46
5476 6037 7.593825 AGGTTAGACAAAATCATGTAACAAGC 58.406 34.615 0.00 0.00 32.57 4.01
5519 6080 7.730364 TCTCCATACAGAGAAAGAACAAAAC 57.270 36.000 0.00 0.00 39.94 2.43
5548 6109 7.402054 TCAGTAAATGTCTGACCCACAATTAT 58.598 34.615 5.17 0.00 37.07 1.28
5582 6143 9.073475 TGAAGTGTAGCTTGTGGTATAATTTTT 57.927 29.630 0.00 0.00 37.59 1.94
5671 6234 5.305585 TCTTTCAGGTTAGTAAAGTGGCAG 58.694 41.667 0.00 0.00 33.07 4.85
5674 6237 7.415229 GTGTTTCTTTCAGGTTAGTAAAGTGG 58.585 38.462 0.00 0.00 33.07 4.00
5727 6290 5.765510 TGGGTATCAGGTATCTTTTGCAAT 58.234 37.500 0.00 0.00 0.00 3.56
5742 6305 8.966155 TTGAGGTATCTGTTATATGGGTATCA 57.034 34.615 0.00 0.00 0.00 2.15
5743 6306 9.036980 ACTTGAGGTATCTGTTATATGGGTATC 57.963 37.037 0.00 0.00 0.00 2.24
5744 6307 8.816894 CACTTGAGGTATCTGTTATATGGGTAT 58.183 37.037 0.00 0.00 0.00 2.73
5747 6310 7.067496 ACACTTGAGGTATCTGTTATATGGG 57.933 40.000 0.00 0.00 0.00 4.00
5748 6311 8.964476 AAACACTTGAGGTATCTGTTATATGG 57.036 34.615 0.00 0.00 0.00 2.74
5750 6313 8.893727 GCAAAACACTTGAGGTATCTGTTATAT 58.106 33.333 0.00 0.00 0.00 0.86
5858 6465 7.343057 AGACCAGATTCTTGAAAATATTTCCCC 59.657 37.037 0.10 0.00 0.00 4.81
5873 6480 5.738909 CATTTCCTGTACAGACCAGATTCT 58.261 41.667 24.68 0.00 31.38 2.40
5884 6491 5.297527 CAGATTAGCATGCATTTCCTGTACA 59.702 40.000 21.98 0.00 0.00 2.90
5949 6632 6.754193 TGGAAAATGGAAACCATAACAGTTC 58.246 36.000 3.64 4.01 44.40 3.01
6017 6701 0.176449 CACCAGGCGATCATCAGACA 59.824 55.000 0.00 0.00 0.00 3.41
6027 6736 3.275143 CCAATGTAATAACACCAGGCGA 58.725 45.455 0.00 0.00 38.78 5.54
6028 6737 2.223479 GCCAATGTAATAACACCAGGCG 60.223 50.000 0.00 0.00 39.11 5.52
6111 6821 2.093711 ACCTTCGCTATGTACATGTGCA 60.094 45.455 19.24 19.24 0.00 4.57
6116 6826 1.538204 CGCCACCTTCGCTATGTACAT 60.538 52.381 13.93 13.93 0.00 2.29
6132 6842 1.291184 CTGATTCAGACAACGCGCCA 61.291 55.000 5.73 0.00 32.44 5.69
6136 6846 0.723981 GCTCCTGATTCAGACAACGC 59.276 55.000 15.36 6.15 32.44 4.84
6137 6847 1.998315 CAGCTCCTGATTCAGACAACG 59.002 52.381 15.36 0.00 32.44 4.10
6222 6939 2.443255 AGCCCGGGAATCATAATGTTCT 59.557 45.455 29.31 3.10 0.00 3.01
6287 7004 0.171903 GGTCTTCTAAGTACGCGCCA 59.828 55.000 5.73 0.00 0.00 5.69
6292 7009 4.795904 CGTTTTCGGTCTTCTAAGTACG 57.204 45.455 0.00 0.00 39.94 3.67
6339 7056 6.048509 CCTAAGCACAAAAACAGTGGAAAAT 58.951 36.000 0.00 0.00 37.46 1.82
6385 7102 1.296056 AACGCAAACCCCGAATCTCG 61.296 55.000 0.00 0.00 40.07 4.04
6388 7105 0.168128 CTCAACGCAAACCCCGAATC 59.832 55.000 0.00 0.00 0.00 2.52
6460 7177 9.863650 ACCTAGTAGCTATACAAGAATCACTTA 57.136 33.333 0.00 0.00 37.03 2.24
6461 7178 8.770010 ACCTAGTAGCTATACAAGAATCACTT 57.230 34.615 0.00 0.00 39.70 3.16
6512 7232 1.617850 AGTGAGTGAGAGGTGCTTCAG 59.382 52.381 0.00 0.00 0.00 3.02
6535 7257 6.030548 TCAGATCAGAAATATCCATCGTCC 57.969 41.667 0.00 0.00 0.00 4.79
6558 7280 4.222145 TGAGTACCGAGGAAAGTGCTAAAT 59.778 41.667 0.00 0.00 0.00 1.40
6580 7302 4.553547 CGCCAGAGTTCAAAGTTTCTCTTG 60.554 45.833 3.23 2.32 35.46 3.02
6581 7303 3.561725 CGCCAGAGTTCAAAGTTTCTCTT 59.438 43.478 3.23 0.00 35.46 2.85
6583 7305 2.349912 GCGCCAGAGTTCAAAGTTTCTC 60.350 50.000 0.00 0.00 0.00 2.87
6584 7306 1.604278 GCGCCAGAGTTCAAAGTTTCT 59.396 47.619 0.00 0.00 0.00 2.52
6585 7307 1.604278 AGCGCCAGAGTTCAAAGTTTC 59.396 47.619 2.29 0.00 0.00 2.78
6586 7308 1.334869 CAGCGCCAGAGTTCAAAGTTT 59.665 47.619 2.29 0.00 0.00 2.66
6587 7309 0.947244 CAGCGCCAGAGTTCAAAGTT 59.053 50.000 2.29 0.00 0.00 2.66
6588 7310 0.886490 CCAGCGCCAGAGTTCAAAGT 60.886 55.000 2.29 0.00 0.00 2.66
6589 7311 0.886490 ACCAGCGCCAGAGTTCAAAG 60.886 55.000 2.29 0.00 0.00 2.77
6590 7312 1.148273 ACCAGCGCCAGAGTTCAAA 59.852 52.632 2.29 0.00 0.00 2.69
6591 7313 1.597854 CACCAGCGCCAGAGTTCAA 60.598 57.895 2.29 0.00 0.00 2.69
6592 7314 2.031012 CACCAGCGCCAGAGTTCA 59.969 61.111 2.29 0.00 0.00 3.18
6593 7315 3.426568 GCACCAGCGCCAGAGTTC 61.427 66.667 2.29 0.00 0.00 3.01
6594 7316 4.254709 TGCACCAGCGCCAGAGTT 62.255 61.111 2.29 0.00 46.23 3.01
6595 7317 4.694233 CTGCACCAGCGCCAGAGT 62.694 66.667 2.29 0.00 46.23 3.24
6605 7327 2.126596 CACCTTGGTTGCTGCACCA 61.127 57.895 16.47 16.47 45.68 4.17
6606 7328 2.730094 CACCTTGGTTGCTGCACC 59.270 61.111 0.00 8.07 37.34 5.01
6607 7329 2.730094 CCACCTTGGTTGCTGCAC 59.270 61.111 0.00 0.00 31.35 4.57
6617 7339 1.252904 CCTTCCATGGCACCACCTTG 61.253 60.000 6.96 0.00 42.10 3.61
6618 7340 1.077265 CCTTCCATGGCACCACCTT 59.923 57.895 6.96 0.00 40.22 3.50
6619 7341 1.852157 TCCTTCCATGGCACCACCT 60.852 57.895 6.96 0.00 40.22 4.00
6620 7342 1.379044 CTCCTTCCATGGCACCACC 60.379 63.158 6.96 0.00 39.84 4.61
6621 7343 1.379044 CCTCCTTCCATGGCACCAC 60.379 63.158 6.96 0.00 0.00 4.16
6622 7344 2.615465 CCCTCCTTCCATGGCACCA 61.615 63.158 6.96 0.00 0.00 4.17
6623 7345 2.276740 CCCTCCTTCCATGGCACC 59.723 66.667 6.96 0.00 0.00 5.01
6624 7346 2.440980 GCCCTCCTTCCATGGCAC 60.441 66.667 6.96 0.00 43.46 5.01
6625 7347 4.113815 CGCCCTCCTTCCATGGCA 62.114 66.667 6.96 0.00 44.22 4.92
6627 7349 4.883354 GGCGCCCTCCTTCCATGG 62.883 72.222 18.11 4.97 0.00 3.66
6628 7350 4.883354 GGGCGCCCTCCTTCCATG 62.883 72.222 38.76 0.00 0.00 3.66
6638 7360 3.834013 GATGCTCTTAGGGGCGCCC 62.834 68.421 38.57 38.57 45.90 6.13
6639 7361 2.281139 GATGCTCTTAGGGGCGCC 60.281 66.667 21.18 21.18 0.00 6.53
6640 7362 1.301322 GAGATGCTCTTAGGGGCGC 60.301 63.158 0.00 0.00 0.00 6.53
6641 7363 1.369321 GGAGATGCTCTTAGGGGCG 59.631 63.158 0.00 0.00 0.00 6.13
6642 7364 1.115930 TCGGAGATGCTCTTAGGGGC 61.116 60.000 0.00 0.00 0.00 5.80
6643 7365 1.069358 GTTCGGAGATGCTCTTAGGGG 59.931 57.143 0.00 0.00 35.04 4.79
6644 7366 1.269309 CGTTCGGAGATGCTCTTAGGG 60.269 57.143 0.00 0.00 35.04 3.53
6645 7367 1.866063 GCGTTCGGAGATGCTCTTAGG 60.866 57.143 0.00 0.00 35.74 2.69
6646 7368 1.482278 GCGTTCGGAGATGCTCTTAG 58.518 55.000 0.00 0.00 35.74 2.18
6647 7369 0.248498 CGCGTTCGGAGATGCTCTTA 60.248 55.000 0.00 0.00 36.35 2.10
6648 7370 1.517257 CGCGTTCGGAGATGCTCTT 60.517 57.895 0.00 0.00 36.35 2.85
6649 7371 2.103143 CGCGTTCGGAGATGCTCT 59.897 61.111 0.00 0.00 36.35 4.09
6650 7372 3.621394 GCGCGTTCGGAGATGCTC 61.621 66.667 8.43 0.00 36.35 4.26
6708 7430 2.111999 TTTAGCGTGGCTGCTGGAGT 62.112 55.000 13.83 0.00 46.70 3.85
6746 7468 3.822403 TTTTGCGCGTTGCTGGAGC 62.822 57.895 8.43 0.00 46.63 4.70
6748 7470 0.938637 CATTTTTGCGCGTTGCTGGA 60.939 50.000 8.43 0.00 46.63 3.86
6749 7471 1.488093 CATTTTTGCGCGTTGCTGG 59.512 52.632 8.43 0.00 46.63 4.85
6750 7472 1.154800 GCATTTTTGCGCGTTGCTG 60.155 52.632 8.43 0.00 46.63 4.41
6751 7473 1.550659 CTGCATTTTTGCGCGTTGCT 61.551 50.000 8.43 0.00 46.63 3.91
6752 7474 1.154800 CTGCATTTTTGCGCGTTGC 60.155 52.632 8.43 7.88 46.70 4.17
6753 7475 1.154800 GCTGCATTTTTGCGCGTTG 60.155 52.632 8.43 0.00 37.69 4.10
6754 7476 2.647381 CGCTGCATTTTTGCGCGTT 61.647 52.632 20.48 0.00 45.17 4.84
6755 7477 3.098958 CGCTGCATTTTTGCGCGT 61.099 55.556 20.48 0.00 45.17 6.01
6795 7517 5.664294 TGCTTCTGTTTTGGATTGCATAT 57.336 34.783 0.00 0.00 0.00 1.78
6796 7518 5.465532 TTGCTTCTGTTTTGGATTGCATA 57.534 34.783 0.00 0.00 0.00 3.14
6797 7519 4.339872 TTGCTTCTGTTTTGGATTGCAT 57.660 36.364 0.00 0.00 0.00 3.96
6798 7520 3.815856 TTGCTTCTGTTTTGGATTGCA 57.184 38.095 0.00 0.00 0.00 4.08
6799 7521 5.294060 TCTTTTTGCTTCTGTTTTGGATTGC 59.706 36.000 0.00 0.00 0.00 3.56
6800 7522 6.907206 TCTTTTTGCTTCTGTTTTGGATTG 57.093 33.333 0.00 0.00 0.00 2.67
6801 7523 7.274447 TGATCTTTTTGCTTCTGTTTTGGATT 58.726 30.769 0.00 0.00 0.00 3.01
6810 7533 6.890663 TTGTGTTTGATCTTTTTGCTTCTG 57.109 33.333 0.00 0.00 0.00 3.02
6920 7643 7.499321 TGGTCGATACTATTTGTTGTGTTTT 57.501 32.000 0.00 0.00 0.00 2.43
6921 7644 7.681939 ATGGTCGATACTATTTGTTGTGTTT 57.318 32.000 0.00 0.00 0.00 2.83
6937 7660 5.221263 GGATGATAATAGCCGTATGGTCGAT 60.221 44.000 2.17 0.00 37.67 3.59
6938 7661 4.097437 GGATGATAATAGCCGTATGGTCGA 59.903 45.833 2.17 0.00 37.67 4.20
6939 7662 4.360563 GGATGATAATAGCCGTATGGTCG 58.639 47.826 2.17 0.00 37.67 4.79
6941 7664 4.386867 CGGATGATAATAGCCGTATGGT 57.613 45.455 2.17 0.00 44.11 3.55
6952 7675 7.603180 TGGCTATTATCTAGCGGATGATAAT 57.397 36.000 15.31 15.31 43.80 1.28
6953 7676 7.603180 ATGGCTATTATCTAGCGGATGATAA 57.397 36.000 5.66 0.00 41.24 1.75
6954 7677 7.945109 ACTATGGCTATTATCTAGCGGATGATA 59.055 37.037 5.66 6.35 41.24 2.15
6956 7679 6.129874 ACTATGGCTATTATCTAGCGGATGA 58.870 40.000 5.66 0.00 41.24 2.92
6985 8143 1.080298 TTGTAGCAAATGGCCGTACG 58.920 50.000 8.69 8.69 46.50 3.67
6991 8149 2.437200 TGCAGTTTGTAGCAAATGGC 57.563 45.000 11.04 11.04 45.30 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.