Multiple sequence alignment - TraesCS2D01G190000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G190000 chr2D 100.000 5698 0 0 1 5698 133774609 133768912 0.000000e+00 10523.0
1 TraesCS2D01G190000 chr2D 92.908 141 4 4 5053 5187 79056167 79056307 3.480000e-47 200.0
2 TraesCS2D01G190000 chr2A 94.593 2589 90 23 2849 5409 141508686 141506120 0.000000e+00 3960.0
3 TraesCS2D01G190000 chr2A 89.840 1683 108 24 595 2257 141511020 141509381 0.000000e+00 2102.0
4 TraesCS2D01G190000 chr2A 95.607 478 21 0 2351 2828 141509382 141508905 0.000000e+00 767.0
5 TraesCS2D01G190000 chr2A 92.829 251 17 1 5448 5698 141506124 141505875 4.200000e-96 363.0
6 TraesCS2D01G190000 chr2B 93.786 1738 78 18 3971 5698 190024123 190022406 0.000000e+00 2584.0
7 TraesCS2D01G190000 chr2B 94.411 1342 59 7 919 2252 190027002 190025669 0.000000e+00 2049.0
8 TraesCS2D01G190000 chr2B 95.889 900 23 4 2850 3745 190025033 190024144 0.000000e+00 1445.0
9 TraesCS2D01G190000 chr2B 94.144 444 24 2 2385 2828 190025651 190025210 0.000000e+00 675.0
10 TraesCS2D01G190000 chr2B 90.268 298 18 1 441 738 190028944 190028658 4.170000e-101 379.0
11 TraesCS2D01G190000 chr2B 90.306 196 17 2 222 416 190029131 190028937 7.330000e-64 255.0
12 TraesCS2D01G190000 chr2B 96.269 134 3 1 799 932 190027156 190027025 9.610000e-53 219.0
13 TraesCS2D01G190000 chr2B 92.593 135 7 3 1 132 190029260 190029126 2.100000e-44 191.0
14 TraesCS2D01G190000 chr2B 98.113 106 1 1 2255 2359 397939373 397939478 3.510000e-42 183.0
15 TraesCS2D01G190000 chr2B 94.495 109 5 1 125 232 151658516 151658624 3.530000e-37 167.0
16 TraesCS2D01G190000 chr2B 93.636 110 7 0 121 230 297434452 297434343 1.270000e-36 165.0
17 TraesCS2D01G190000 chr2B 94.393 107 6 0 121 227 418953672 418953566 1.270000e-36 165.0
18 TraesCS2D01G190000 chr6A 92.763 152 5 4 5051 5196 411770251 411770402 1.240000e-51 215.0
19 TraesCS2D01G190000 chr6A 97.196 107 2 1 2249 2355 315625368 315625263 4.540000e-41 180.0
20 TraesCS2D01G190000 chr5B 93.617 141 5 3 5052 5188 665744468 665744608 2.080000e-49 207.0
21 TraesCS2D01G190000 chr4B 92.000 150 6 3 5053 5196 106227409 106227558 7.480000e-49 206.0
22 TraesCS2D01G190000 chr4B 97.196 107 3 0 2251 2357 32922789 32922895 1.260000e-41 182.0
23 TraesCS2D01G190000 chr4B 90.323 124 9 3 103 225 498378634 498378513 5.910000e-35 159.0
24 TraesCS2D01G190000 chr3A 91.391 151 7 1 5052 5196 509865406 509865256 9.680000e-48 202.0
25 TraesCS2D01G190000 chr3A 90.323 124 11 1 109 232 724949375 724949497 1.640000e-35 161.0
26 TraesCS2D01G190000 chr4A 91.275 149 8 1 5053 5196 690411290 690411438 1.250000e-46 198.0
27 TraesCS2D01G190000 chr3D 90.850 153 7 5 5051 5196 288550613 288550461 1.250000e-46 198.0
28 TraesCS2D01G190000 chr3D 94.340 106 5 1 126 230 404291677 404291572 1.640000e-35 161.0
29 TraesCS2D01G190000 chr3B 99.029 103 1 0 2255 2357 560117398 560117296 9.750000e-43 185.0
30 TraesCS2D01G190000 chr3B 97.222 108 2 1 2249 2356 719044117 719044011 1.260000e-41 182.0
31 TraesCS2D01G190000 chr3B 93.636 110 7 0 122 231 168192323 168192432 1.270000e-36 165.0
32 TraesCS2D01G190000 chr6B 96.330 109 3 1 2248 2356 718346916 718346809 1.630000e-40 178.0
33 TraesCS2D01G190000 chr6B 91.200 125 8 3 2256 2380 14820675 14820554 3.530000e-37 167.0
34 TraesCS2D01G190000 chr1A 94.737 114 3 2 2251 2362 21622102 21621990 2.110000e-39 174.0
35 TraesCS2D01G190000 chr5D 95.192 104 5 0 122 225 500862444 500862547 1.270000e-36 165.0
36 TraesCS2D01G190000 chr1B 96.078 102 3 1 125 225 526192416 526192315 1.270000e-36 165.0
37 TraesCS2D01G190000 chr1D 87.586 145 9 7 2247 2386 361353554 361353694 5.910000e-35 159.0
38 TraesCS2D01G190000 chr5A 94.444 54 3 0 234 287 70439978 70440031 3.660000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G190000 chr2D 133768912 133774609 5697 True 10523.000 10523 100.00000 1 5698 1 chr2D.!!$R1 5697
1 TraesCS2D01G190000 chr2A 141505875 141511020 5145 True 1798.000 3960 93.21725 595 5698 4 chr2A.!!$R1 5103
2 TraesCS2D01G190000 chr2B 190022406 190029260 6854 True 974.625 2584 93.45825 1 5698 8 chr2B.!!$R3 5697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 413 0.027716 GCATTGTCTGCGAGCTCATG 59.972 55.0 15.40 8.93 41.97 3.07 F
603 608 0.038744 CATGCCTGTTCTGGGAGGTT 59.961 55.0 0.00 0.00 0.00 3.50 F
2270 3781 0.042131 ACAATACTCCCTCCGTCCCA 59.958 55.0 0.00 0.00 0.00 4.37 F
2843 4354 0.035534 TCCACGTCCAACCATCCATG 60.036 55.0 0.00 0.00 0.00 3.66 F
3897 5614 0.099259 ACATCACCATTTGCGCATCG 59.901 50.0 12.75 1.99 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 3847 1.502039 ACATATACTCCCTCCGTCCCA 59.498 52.381 0.00 0.0 0.00 4.37 R
2454 3965 1.206132 CCCATACTCACGTGCCTGTTA 59.794 52.381 11.67 0.0 0.00 2.41 R
4025 5746 1.043116 TGCACTACGGCCTCTGCTAT 61.043 55.000 0.00 0.0 37.74 2.97 R
4346 6071 1.812571 AGCTGAAACTTAATGGTGCCG 59.187 47.619 0.00 0.0 0.00 5.69 R
5621 7360 1.110442 CCACTGCTGTGACCCAAAAA 58.890 50.000 23.75 0.0 46.55 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.581213 ATTGATGAACTAGTTGTCAAAACCA 57.419 32.000 25.13 12.33 31.80 3.67
51 52 7.581213 TGAACTAGTTGTCAAAACCAATGAT 57.419 32.000 14.14 0.00 0.00 2.45
52 53 8.006298 TGAACTAGTTGTCAAAACCAATGATT 57.994 30.769 14.14 0.00 0.00 2.57
109 113 7.931578 TTCGGATTTATGTTAATGTTCCACT 57.068 32.000 0.00 0.00 0.00 4.00
130 134 9.987272 TCCACTAAAAGAAAGGTTAACTAGTAC 57.013 33.333 5.42 0.00 0.00 2.73
131 135 9.993454 CCACTAAAAGAAAGGTTAACTAGTACT 57.007 33.333 5.42 0.00 0.00 2.73
134 138 9.650539 CTAAAAGAAAGGTTAACTAGTACTCCC 57.349 37.037 0.00 0.00 0.00 4.30
135 139 7.868792 AAAGAAAGGTTAACTAGTACTCCCT 57.131 36.000 0.00 0.00 0.00 4.20
136 140 7.479352 AAGAAAGGTTAACTAGTACTCCCTC 57.521 40.000 0.00 0.00 0.00 4.30
137 141 5.957168 AGAAAGGTTAACTAGTACTCCCTCC 59.043 44.000 0.00 0.00 0.00 4.30
138 142 3.895998 AGGTTAACTAGTACTCCCTCCG 58.104 50.000 0.00 0.00 0.00 4.63
139 143 3.268072 AGGTTAACTAGTACTCCCTCCGT 59.732 47.826 0.00 0.00 0.00 4.69
140 144 3.629855 GGTTAACTAGTACTCCCTCCGTC 59.370 52.174 0.00 0.00 0.00 4.79
141 145 2.433662 AACTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
142 146 0.550432 ACTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
143 147 0.534652 CTAGTACTCCCTCCGTCCCG 60.535 65.000 0.00 0.00 0.00 5.14
144 148 0.982852 TAGTACTCCCTCCGTCCCGA 60.983 60.000 0.00 0.00 0.00 5.14
145 149 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
146 150 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
147 151 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
148 152 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
149 153 1.117150 CTCCCTCCGTCCCGAAATAA 58.883 55.000 0.00 0.00 0.00 1.40
150 154 1.068741 CTCCCTCCGTCCCGAAATAAG 59.931 57.143 0.00 0.00 0.00 1.73
151 155 0.828677 CCCTCCGTCCCGAAATAAGT 59.171 55.000 0.00 0.00 0.00 2.24
152 156 1.472728 CCCTCCGTCCCGAAATAAGTG 60.473 57.143 0.00 0.00 0.00 3.16
153 157 1.206371 CCTCCGTCCCGAAATAAGTGT 59.794 52.381 0.00 0.00 0.00 3.55
154 158 2.537401 CTCCGTCCCGAAATAAGTGTC 58.463 52.381 0.00 0.00 0.00 3.67
155 159 2.165845 CTCCGTCCCGAAATAAGTGTCT 59.834 50.000 0.00 0.00 0.00 3.41
156 160 2.165030 TCCGTCCCGAAATAAGTGTCTC 59.835 50.000 0.00 0.00 0.00 3.36
157 161 2.094390 CCGTCCCGAAATAAGTGTCTCA 60.094 50.000 0.00 0.00 0.00 3.27
158 162 3.581755 CGTCCCGAAATAAGTGTCTCAA 58.418 45.455 0.00 0.00 0.00 3.02
159 163 3.367025 CGTCCCGAAATAAGTGTCTCAAC 59.633 47.826 0.00 0.00 0.00 3.18
160 164 4.566987 GTCCCGAAATAAGTGTCTCAACT 58.433 43.478 0.00 0.00 0.00 3.16
161 165 4.995487 GTCCCGAAATAAGTGTCTCAACTT 59.005 41.667 0.00 0.00 42.89 2.66
162 166 5.469084 GTCCCGAAATAAGTGTCTCAACTTT 59.531 40.000 0.00 0.00 40.77 2.66
163 167 5.468746 TCCCGAAATAAGTGTCTCAACTTTG 59.531 40.000 0.00 0.00 40.77 2.77
164 168 5.238650 CCCGAAATAAGTGTCTCAACTTTGT 59.761 40.000 0.00 0.00 40.77 2.83
165 169 6.425721 CCCGAAATAAGTGTCTCAACTTTGTA 59.574 38.462 0.00 0.00 40.77 2.41
166 170 7.288672 CCGAAATAAGTGTCTCAACTTTGTAC 58.711 38.462 0.00 0.00 40.77 2.90
167 171 7.170998 CCGAAATAAGTGTCTCAACTTTGTACT 59.829 37.037 0.00 0.00 40.77 2.73
168 172 9.188588 CGAAATAAGTGTCTCAACTTTGTACTA 57.811 33.333 0.00 0.00 40.77 1.82
170 174 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
171 175 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
172 176 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
173 177 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
174 178 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
175 179 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
177 181 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
193 197 8.705048 AGCTCTAGTACAAATTTGTAGTAAGC 57.295 34.615 34.31 34.31 44.49 3.09
194 198 8.532819 AGCTCTAGTACAAATTTGTAGTAAGCT 58.467 33.333 35.84 35.84 44.49 3.74
195 199 8.809478 GCTCTAGTACAAATTTGTAGTAAGCTC 58.191 37.037 34.18 24.93 44.49 4.09
196 200 9.856488 CTCTAGTACAAATTTGTAGTAAGCTCA 57.144 33.333 31.34 18.94 44.49 4.26
200 204 8.989980 AGTACAAATTTGTAGTAAGCTCAAGAC 58.010 33.333 29.07 16.87 43.50 3.01
201 205 7.801716 ACAAATTTGTAGTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
202 206 7.639945 ACAAATTTGTAGTAAGCTCAAGACAC 58.360 34.615 22.10 0.00 40.16 3.67
203 207 7.499232 ACAAATTTGTAGTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
204 208 8.345565 CAAATTTGTAGTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
205 209 9.555727 AAATTTGTAGTAAGCTCAAGACACTTA 57.444 29.630 0.00 0.00 0.00 2.24
206 210 9.726438 AATTTGTAGTAAGCTCAAGACACTTAT 57.274 29.630 0.00 0.00 0.00 1.73
207 211 9.726438 ATTTGTAGTAAGCTCAAGACACTTATT 57.274 29.630 0.00 0.00 0.00 1.40
208 212 9.555727 TTTGTAGTAAGCTCAAGACACTTATTT 57.444 29.630 0.00 0.00 0.00 1.40
209 213 9.555727 TTGTAGTAAGCTCAAGACACTTATTTT 57.444 29.630 0.00 0.00 0.00 1.82
210 214 8.988934 TGTAGTAAGCTCAAGACACTTATTTTG 58.011 33.333 0.00 0.00 0.00 2.44
211 215 7.440523 AGTAAGCTCAAGACACTTATTTTGG 57.559 36.000 0.00 0.00 0.00 3.28
212 216 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
213 217 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
214 218 5.574188 AGCTCAAGACACTTATTTTGGGAT 58.426 37.500 0.00 0.00 0.00 3.85
215 219 6.721318 AGCTCAAGACACTTATTTTGGGATA 58.279 36.000 0.00 0.00 0.00 2.59
216 220 6.825721 AGCTCAAGACACTTATTTTGGGATAG 59.174 38.462 0.00 0.00 0.00 2.08
217 221 6.823689 GCTCAAGACACTTATTTTGGGATAGA 59.176 38.462 0.00 0.00 0.00 1.98
218 222 7.011857 GCTCAAGACACTTATTTTGGGATAGAG 59.988 40.741 0.00 0.00 0.00 2.43
219 223 7.338710 TCAAGACACTTATTTTGGGATAGAGG 58.661 38.462 0.00 0.00 0.00 3.69
220 224 6.253946 AGACACTTATTTTGGGATAGAGGG 57.746 41.667 0.00 0.00 0.00 4.30
221 225 5.970640 AGACACTTATTTTGGGATAGAGGGA 59.029 40.000 0.00 0.00 0.00 4.20
222 226 6.100424 AGACACTTATTTTGGGATAGAGGGAG 59.900 42.308 0.00 0.00 0.00 4.30
223 227 5.731678 ACACTTATTTTGGGATAGAGGGAGT 59.268 40.000 0.00 0.00 0.00 3.85
234 238 5.131784 GGATAGAGGGAGTACTTCTTTCGA 58.868 45.833 0.01 0.00 0.00 3.71
237 241 7.447853 GGATAGAGGGAGTACTTCTTTCGATTA 59.552 40.741 0.01 0.00 0.00 1.75
240 244 6.890814 AGAGGGAGTACTTCTTTCGATTAGAA 59.109 38.462 0.01 9.38 37.01 2.10
340 344 5.010282 TCAGCTTTCCCTATTTTCCTTCAC 58.990 41.667 0.00 0.00 0.00 3.18
379 384 2.580155 TTTGAGCAGGTGTTGGGCCA 62.580 55.000 0.00 0.00 0.00 5.36
384 389 4.290622 AGGTGTTGGGCCAGCCTG 62.291 66.667 18.29 0.00 36.10 4.85
406 411 3.880591 GCATTGTCTGCGAGCTCA 58.119 55.556 15.40 0.00 41.97 4.26
408 413 0.027716 GCATTGTCTGCGAGCTCATG 59.972 55.000 15.40 8.93 41.97 3.07
409 414 0.656259 CATTGTCTGCGAGCTCATGG 59.344 55.000 15.40 2.48 0.00 3.66
410 415 0.538584 ATTGTCTGCGAGCTCATGGA 59.461 50.000 15.40 5.00 0.00 3.41
411 416 0.108472 TTGTCTGCGAGCTCATGGAG 60.108 55.000 15.40 9.12 0.00 3.86
431 436 3.195698 CCAACCGGCGCTTAGAGC 61.196 66.667 7.64 0.00 38.02 4.09
432 437 2.434185 CAACCGGCGCTTAGAGCA 60.434 61.111 7.64 0.00 42.58 4.26
433 438 2.434359 AACCGGCGCTTAGAGCAC 60.434 61.111 7.64 0.00 42.58 4.40
434 439 3.952628 AACCGGCGCTTAGAGCACC 62.953 63.158 7.64 1.75 42.58 5.01
437 442 4.452733 GGCGCTTAGAGCACCGGT 62.453 66.667 7.64 0.00 42.58 5.28
438 443 2.434359 GCGCTTAGAGCACCGGTT 60.434 61.111 2.97 0.00 42.58 4.44
439 444 1.153706 GCGCTTAGAGCACCGGTTA 60.154 57.895 2.97 0.00 42.58 2.85
462 467 2.768344 TCCCTTCATCCTCCCGGC 60.768 66.667 0.00 0.00 0.00 6.13
480 485 1.284982 GCCGCGTGGATGTATAGCTG 61.285 60.000 21.76 0.00 37.49 4.24
538 543 1.672356 GCATGCTCAACCCGTCACT 60.672 57.895 11.37 0.00 0.00 3.41
576 581 2.672996 GCACCCGACACTGCCAAT 60.673 61.111 0.00 0.00 0.00 3.16
577 582 2.690778 GCACCCGACACTGCCAATC 61.691 63.158 0.00 0.00 0.00 2.67
578 583 2.040544 CACCCGACACTGCCAATCC 61.041 63.158 0.00 0.00 0.00 3.01
579 584 2.819595 CCCGACACTGCCAATCCG 60.820 66.667 0.00 0.00 0.00 4.18
597 602 2.707849 GCTGCCATGCCTGTTCTGG 61.708 63.158 0.00 0.00 0.00 3.86
603 608 0.038744 CATGCCTGTTCTGGGAGGTT 59.961 55.000 0.00 0.00 0.00 3.50
616 621 3.246112 AGGTTAGGCCCGTGTGCA 61.246 61.111 0.00 0.00 38.26 4.57
641 646 3.389925 TGACACGACCCGTTAATTTCT 57.610 42.857 0.00 0.00 38.32 2.52
695 702 2.785857 AGGCTGACTATAGGCCCAAAAT 59.214 45.455 13.17 0.00 46.31 1.82
763 770 1.232119 CGGTCCGGCCCATTTAATAC 58.768 55.000 0.76 0.00 0.00 1.89
769 776 1.821666 CGGCCCATTTAATACAGGGGG 60.822 57.143 0.00 0.00 41.75 5.40
771 778 2.009681 CCCATTTAATACAGGGGGCC 57.990 55.000 0.00 0.00 37.66 5.80
772 779 1.616159 CCATTTAATACAGGGGGCCG 58.384 55.000 0.00 0.00 0.00 6.13
773 780 1.133606 CCATTTAATACAGGGGGCCGT 60.134 52.381 0.00 0.00 0.00 5.68
774 781 1.953686 CATTTAATACAGGGGGCCGTG 59.046 52.381 0.00 0.00 37.77 4.94
793 800 2.677228 CTCGACCTGGGGGCAAAT 59.323 61.111 0.00 0.00 35.63 2.32
797 804 3.982258 GACCTGGGGGCAAATGGGG 62.982 68.421 0.00 0.00 35.63 4.96
902 2358 1.475280 TGATTCTCATGCTTTGCAGCC 59.525 47.619 0.00 0.00 46.74 4.85
903 2359 1.749634 GATTCTCATGCTTTGCAGCCT 59.250 47.619 0.00 0.00 46.74 4.58
977 2470 1.686587 CAGAACCCTCAACCAAAACCC 59.313 52.381 0.00 0.00 0.00 4.11
1609 3108 4.988540 GTGAAAAGGAACCCAAAATGCTAC 59.011 41.667 0.00 0.00 0.00 3.58
1610 3109 4.651503 TGAAAAGGAACCCAAAATGCTACA 59.348 37.500 0.00 0.00 0.00 2.74
1629 3129 7.423199 TGCTACAGTATCTCGGTATTTACTTG 58.577 38.462 0.00 0.00 0.00 3.16
1653 3153 4.666237 GATTAGTTGCCAAATCAGCTGAC 58.334 43.478 20.97 6.43 33.26 3.51
1784 3284 8.951243 GGTTATTGTTCTCTCTTAATTTGCTCT 58.049 33.333 0.00 0.00 0.00 4.09
1855 3355 7.923414 ACTTATTTGAGGTGACAAATAGTCC 57.077 36.000 0.00 0.00 46.30 3.85
1878 3378 4.440758 CACACTTAGTTTTTGGATTGTGCG 59.559 41.667 0.00 0.00 0.00 5.34
1903 3403 9.993881 CGCTTTATTTTGTTTGTTTCATTAGAG 57.006 29.630 0.00 0.00 0.00 2.43
1927 3427 5.634859 GGATTAGCTTGAACCACACAAATTG 59.365 40.000 0.00 0.00 0.00 2.32
1949 3449 8.650143 ATTGCTGGGAAAATAGTTAGAAAGAA 57.350 30.769 0.00 0.00 0.00 2.52
2162 3673 2.159382 ACATTGATTTGGTGTCCCGAC 58.841 47.619 0.00 0.00 0.00 4.79
2191 3702 3.632643 TGAGGCTATGCATCAAGAACA 57.367 42.857 0.19 0.00 46.20 3.18
2192 3703 3.954200 TGAGGCTATGCATCAAGAACAA 58.046 40.909 0.19 0.00 46.20 2.83
2255 3766 6.976934 AGGTTTCACATCCTTTAACACAAT 57.023 33.333 0.00 0.00 0.00 2.71
2256 3767 9.747898 ATAGGTTTCACATCCTTTAACACAATA 57.252 29.630 0.00 0.00 35.51 1.90
2257 3768 7.882179 AGGTTTCACATCCTTTAACACAATAC 58.118 34.615 0.00 0.00 0.00 1.89
2258 3769 7.724061 AGGTTTCACATCCTTTAACACAATACT 59.276 33.333 0.00 0.00 0.00 2.12
2259 3770 8.021396 GGTTTCACATCCTTTAACACAATACTC 58.979 37.037 0.00 0.00 0.00 2.59
2260 3771 7.681939 TTCACATCCTTTAACACAATACTCC 57.318 36.000 0.00 0.00 0.00 3.85
2261 3772 6.177610 TCACATCCTTTAACACAATACTCCC 58.822 40.000 0.00 0.00 0.00 4.30
2262 3773 6.012858 TCACATCCTTTAACACAATACTCCCT 60.013 38.462 0.00 0.00 0.00 4.20
2263 3774 6.316390 CACATCCTTTAACACAATACTCCCTC 59.684 42.308 0.00 0.00 0.00 4.30
2264 3775 5.431179 TCCTTTAACACAATACTCCCTCC 57.569 43.478 0.00 0.00 0.00 4.30
2265 3776 4.081309 TCCTTTAACACAATACTCCCTCCG 60.081 45.833 0.00 0.00 0.00 4.63
2266 3777 4.323257 CCTTTAACACAATACTCCCTCCGT 60.323 45.833 0.00 0.00 0.00 4.69
2267 3778 4.460948 TTAACACAATACTCCCTCCGTC 57.539 45.455 0.00 0.00 0.00 4.79
2268 3779 1.192428 ACACAATACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
2269 3780 0.464452 CACAATACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
2270 3781 0.042131 ACAATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2271 3782 1.200519 CAATACTCCCTCCGTCCCAA 58.799 55.000 0.00 0.00 0.00 4.12
2272 3783 1.557832 CAATACTCCCTCCGTCCCAAA 59.442 52.381 0.00 0.00 0.00 3.28
2273 3784 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2274 3785 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2275 3786 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2276 3787 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2277 3788 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2278 3789 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2279 3790 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2280 3791 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2281 3792 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2282 3793 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2283 3794 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2284 3795 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2285 3796 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2286 3797 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2287 3798 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2288 3799 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2289 3800 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2290 3801 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2291 3802 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
2292 3803 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
2293 3804 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
2294 3805 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
2295 3806 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
2296 3807 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2297 3808 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2298 3809 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
2299 3810 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
2300 3811 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2301 3812 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
2302 3813 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
2303 3814 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
2326 3837 5.732633 ACTAGAGCTAGTACAAAGTCGAGA 58.267 41.667 8.35 0.00 43.98 4.04
2327 3838 4.950434 AGAGCTAGTACAAAGTCGAGAC 57.050 45.455 0.00 0.00 0.00 3.36
2328 3839 4.325119 AGAGCTAGTACAAAGTCGAGACA 58.675 43.478 5.99 0.00 0.00 3.41
2329 3840 4.154556 AGAGCTAGTACAAAGTCGAGACAC 59.845 45.833 5.99 0.00 0.00 3.67
2330 3841 4.073549 AGCTAGTACAAAGTCGAGACACT 58.926 43.478 5.99 2.70 0.00 3.55
2331 3842 4.519730 AGCTAGTACAAAGTCGAGACACTT 59.480 41.667 5.99 0.00 38.30 3.16
2332 3843 5.704515 AGCTAGTACAAAGTCGAGACACTTA 59.295 40.000 5.99 0.00 35.45 2.24
2333 3844 6.374894 AGCTAGTACAAAGTCGAGACACTTAT 59.625 38.462 5.99 0.00 35.45 1.73
2334 3845 7.028361 GCTAGTACAAAGTCGAGACACTTATT 58.972 38.462 5.99 0.00 35.45 1.40
2335 3846 7.541437 GCTAGTACAAAGTCGAGACACTTATTT 59.459 37.037 5.99 0.00 35.45 1.40
2336 3847 9.408069 CTAGTACAAAGTCGAGACACTTATTTT 57.592 33.333 5.99 0.00 35.45 1.82
2337 3848 8.073355 AGTACAAAGTCGAGACACTTATTTTG 57.927 34.615 5.99 8.46 35.45 2.44
2338 3849 6.300354 ACAAAGTCGAGACACTTATTTTGG 57.700 37.500 5.99 0.00 35.45 3.28
2339 3850 5.238650 ACAAAGTCGAGACACTTATTTTGGG 59.761 40.000 5.99 0.00 35.45 4.12
2340 3851 4.884668 AGTCGAGACACTTATTTTGGGA 57.115 40.909 5.99 0.00 0.00 4.37
2341 3852 4.566987 AGTCGAGACACTTATTTTGGGAC 58.433 43.478 5.99 0.00 0.00 4.46
2342 3853 3.367025 GTCGAGACACTTATTTTGGGACG 59.633 47.826 0.00 0.00 0.00 4.79
2343 3854 2.671396 CGAGACACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 0.00 4.79
2344 3855 3.615592 CGAGACACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 0.00 4.69
2345 3856 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2346 3857 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2347 3858 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2348 3859 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2362 3873 3.890147 ACGGAGGGAGTATATGTCAGTTC 59.110 47.826 0.00 0.00 0.00 3.01
2454 3965 7.178274 CCTCTTGACTATTGCAGGTATAGAGAT 59.822 40.741 10.24 0.00 30.96 2.75
2605 4116 0.525761 AGTCTCTTGCTCTCGCTCAC 59.474 55.000 0.00 0.00 36.97 3.51
2680 4191 5.517770 GCATTTTCCATCTCAGTTAATGCAC 59.482 40.000 0.00 0.00 43.39 4.57
2682 4193 6.899393 TTTTCCATCTCAGTTAATGCACTT 57.101 33.333 0.00 0.00 0.00 3.16
2715 4226 4.511617 TTGCTGTCACAAAGTGTTTTGA 57.488 36.364 6.98 0.00 45.21 2.69
2717 4228 4.671377 TGCTGTCACAAAGTGTTTTGATC 58.329 39.130 6.98 0.00 45.21 2.92
2766 4277 5.221087 GCAGCTAGTTAAATAGAGGAGACGT 60.221 44.000 13.91 0.00 0.00 4.34
2783 4294 7.705214 AGGAGACGTGTTTGTTCTAGATATAC 58.295 38.462 0.00 0.00 0.00 1.47
2830 4341 2.281484 GTGGTGCATGGTCCACGT 60.281 61.111 8.32 0.00 43.34 4.49
2831 4342 2.031919 TGGTGCATGGTCCACGTC 59.968 61.111 0.00 0.00 34.08 4.34
2832 4343 2.746277 GGTGCATGGTCCACGTCC 60.746 66.667 0.00 0.00 34.08 4.79
2833 4344 2.031919 GTGCATGGTCCACGTCCA 59.968 61.111 0.00 0.00 39.41 4.02
2843 4354 0.035534 TCCACGTCCAACCATCCATG 60.036 55.000 0.00 0.00 0.00 3.66
2847 4358 1.378882 CGTCCAACCATCCATGCAGG 61.379 60.000 0.00 0.00 39.47 4.85
3149 4864 0.438830 CTGCGTTCGTGCTTTCTACC 59.561 55.000 0.00 0.00 35.36 3.18
3277 4992 3.495193 CAAGAGGATTTGCACATGTTCG 58.505 45.455 0.00 0.00 0.00 3.95
3304 5019 4.505191 GCGAACAGAGTAGTTGTAACACAA 59.495 41.667 0.00 0.00 35.42 3.33
3347 5062 9.109393 ACTATTTTCGCATGTGTTATACAGATT 57.891 29.630 6.09 0.00 43.80 2.40
3444 5160 4.047822 TGCTTTGAAAAGTTTACGCATGG 58.952 39.130 4.80 0.00 38.28 3.66
3692 5408 3.140623 GTTTCCCGCCTTGTAAGTACAA 58.859 45.455 3.97 3.97 43.32 2.41
3758 5474 7.875554 ACTTGATACGGCCAAACATTAAATTTT 59.124 29.630 2.24 0.00 0.00 1.82
3766 5482 4.690280 CCAAACATTAAATTTTCGCCTGCT 59.310 37.500 0.00 0.00 0.00 4.24
3792 5509 4.033358 CGTAAGGCTGCTTCAGAATTACAG 59.967 45.833 0.00 4.37 35.56 2.74
3897 5614 0.099259 ACATCACCATTTGCGCATCG 59.901 50.000 12.75 1.99 0.00 3.84
4025 5746 9.334947 GATTCAGTCATTTGAGATAATTGGAGA 57.665 33.333 0.00 0.00 0.00 3.71
4114 5838 6.205853 CGCATACCAGCTTAATGGGTTTATAA 59.794 38.462 0.00 0.00 45.25 0.98
4346 6071 5.947228 TCAGAGTGATTTGAATTGTCACC 57.053 39.130 0.00 0.00 42.38 4.02
4429 6154 7.275785 CGTTGAAAAATACAGAAACTTGCATG 58.724 34.615 0.00 0.00 0.00 4.06
4502 6227 5.255397 AGTAAGGGAATTGATGACCACAA 57.745 39.130 0.00 0.00 0.00 3.33
4535 6260 1.930371 GCCCTTTGTAAACTTGCAGCG 60.930 52.381 0.00 0.00 0.00 5.18
4537 6262 2.223711 CCCTTTGTAAACTTGCAGCGTT 60.224 45.455 0.00 0.00 0.00 4.84
4744 6469 5.299279 ACATGTGCAAGCTAGTTTGTTAAGT 59.701 36.000 18.99 9.91 0.00 2.24
4748 6473 6.202188 TGTGCAAGCTAGTTTGTTAAGTAGTC 59.798 38.462 18.99 1.87 38.83 2.59
4755 6480 9.991906 AGCTAGTTTGTTAAGTAGTCATTTGTA 57.008 29.630 0.00 0.00 38.83 2.41
4776 6501 2.161855 TGGCAGTTGGCTAATTCAGTG 58.838 47.619 7.23 0.00 44.01 3.66
4789 6522 7.611467 TGGCTAATTCAGTGTTATGATCAACTT 59.389 33.333 0.00 0.00 0.00 2.66
4850 6583 6.660887 TTTGCTCTTTTTGTTTGAACCATC 57.339 33.333 0.00 0.00 0.00 3.51
5162 6901 7.169308 CAGTCCGTATGTAGTCCATATTGAAAC 59.831 40.741 0.00 0.00 38.29 2.78
5226 6965 5.024118 AGTACTAACTAGCATGGTCCACTT 58.976 41.667 0.00 0.00 32.84 3.16
5227 6966 4.473477 ACTAACTAGCATGGTCCACTTC 57.527 45.455 0.00 0.00 0.00 3.01
5282 7021 6.633856 AGAATGTGATTTTCCTTGTAATGGC 58.366 36.000 0.00 0.00 0.00 4.40
5301 7040 2.872858 GGCTGACTTTTATCGACATCCC 59.127 50.000 0.00 0.00 0.00 3.85
5345 7084 1.820519 GACATCCATTTGAGGCAGCAA 59.179 47.619 0.00 0.00 0.00 3.91
5346 7085 2.429610 GACATCCATTTGAGGCAGCAAT 59.570 45.455 0.00 0.00 0.00 3.56
5347 7086 3.633525 GACATCCATTTGAGGCAGCAATA 59.366 43.478 0.00 0.00 0.00 1.90
5505 7244 2.677524 GGCAATCAGGGTGCTGCA 60.678 61.111 0.00 0.00 41.88 4.41
5562 7301 1.608055 TGGTGTCTTTGGTGATGCAG 58.392 50.000 0.00 0.00 0.00 4.41
5585 7324 4.675408 GCCTATTGCTCAAACCTAAAGCAC 60.675 45.833 0.00 0.00 45.15 4.40
5600 7339 6.038050 ACCTAAAGCACTACGATGTACTCTAC 59.962 42.308 0.00 0.00 0.00 2.59
5601 7340 5.892160 AAAGCACTACGATGTACTCTACA 57.108 39.130 0.00 0.00 43.80 2.74
5621 7360 4.400120 ACATGATTTGGCTTGCCAATTTT 58.600 34.783 25.17 14.41 0.00 1.82
5641 7380 0.033601 TTTTGGGTCACAGCAGTGGT 60.034 50.000 9.58 0.00 45.91 4.16
5665 7404 2.113233 AGCCAGGATCATAGATGAGGGA 59.887 50.000 0.00 0.00 40.64 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 68 9.810545 TCCGAAAATTAGTTGAAAAGTTCATTT 57.189 25.926 0.00 0.00 39.84 2.32
109 113 9.384849 AGGGAGTACTAGTTAACCTTTCTTTTA 57.615 33.333 0.00 0.00 0.00 1.52
137 141 6.304286 AAGTTGAGACACTTATTTCGGGACG 61.304 44.000 0.00 0.00 44.44 4.79
138 142 4.566987 AGTTGAGACACTTATTTCGGGAC 58.433 43.478 0.00 0.00 0.00 4.46
139 143 4.884668 AGTTGAGACACTTATTTCGGGA 57.115 40.909 0.00 0.00 0.00 5.14
140 144 5.238650 ACAAAGTTGAGACACTTATTTCGGG 59.761 40.000 0.00 0.00 35.87 5.14
141 145 6.300354 ACAAAGTTGAGACACTTATTTCGG 57.700 37.500 0.00 0.00 35.87 4.30
142 146 8.073355 AGTACAAAGTTGAGACACTTATTTCG 57.927 34.615 0.00 0.00 35.87 3.46
144 148 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
145 149 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
146 150 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
147 151 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
148 152 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
149 153 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
150 154 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
151 155 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
152 156 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
167 171 9.798994 GCTTACTACAAATTTGTACTAGAGCTA 57.201 33.333 23.91 10.15 42.35 3.32
168 172 8.532819 AGCTTACTACAAATTTGTACTAGAGCT 58.467 33.333 27.47 27.47 42.35 4.09
169 173 8.705048 AGCTTACTACAAATTTGTACTAGAGC 57.295 34.615 23.91 24.86 42.35 4.09
170 174 9.856488 TGAGCTTACTACAAATTTGTACTAGAG 57.144 33.333 23.91 18.55 42.35 2.43
174 178 8.989980 GTCTTGAGCTTACTACAAATTTGTACT 58.010 33.333 23.91 18.93 42.35 2.73
175 179 8.770828 TGTCTTGAGCTTACTACAAATTTGTAC 58.229 33.333 23.91 15.11 42.35 2.90
176 180 8.770828 GTGTCTTGAGCTTACTACAAATTTGTA 58.229 33.333 25.48 25.48 42.35 2.41
177 181 7.499232 AGTGTCTTGAGCTTACTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
178 182 7.865707 AGTGTCTTGAGCTTACTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
179 183 8.451908 AAGTGTCTTGAGCTTACTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
180 184 9.726438 ATAAGTGTCTTGAGCTTACTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
181 185 9.726438 AATAAGTGTCTTGAGCTTACTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
182 186 9.555727 AAATAAGTGTCTTGAGCTTACTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
183 187 9.555727 AAAATAAGTGTCTTGAGCTTACTACAA 57.444 29.630 0.00 0.00 0.00 2.41
184 188 8.988934 CAAAATAAGTGTCTTGAGCTTACTACA 58.011 33.333 0.00 0.00 0.00 2.74
185 189 8.443937 CCAAAATAAGTGTCTTGAGCTTACTAC 58.556 37.037 0.00 0.00 0.00 2.73
186 190 7.606456 CCCAAAATAAGTGTCTTGAGCTTACTA 59.394 37.037 0.00 0.00 0.00 1.82
187 191 6.431234 CCCAAAATAAGTGTCTTGAGCTTACT 59.569 38.462 0.00 0.00 0.00 2.24
188 192 6.430000 TCCCAAAATAAGTGTCTTGAGCTTAC 59.570 38.462 0.00 0.00 0.00 2.34
189 193 6.539173 TCCCAAAATAAGTGTCTTGAGCTTA 58.461 36.000 0.00 0.00 0.00 3.09
190 194 5.385198 TCCCAAAATAAGTGTCTTGAGCTT 58.615 37.500 0.00 0.00 0.00 3.74
191 195 4.985538 TCCCAAAATAAGTGTCTTGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
192 196 5.904362 ATCCCAAAATAAGTGTCTTGAGC 57.096 39.130 0.00 0.00 0.00 4.26
193 197 7.497249 CCTCTATCCCAAAATAAGTGTCTTGAG 59.503 40.741 0.00 0.00 0.00 3.02
194 198 7.338710 CCTCTATCCCAAAATAAGTGTCTTGA 58.661 38.462 0.00 0.00 0.00 3.02
195 199 6.543831 CCCTCTATCCCAAAATAAGTGTCTTG 59.456 42.308 0.00 0.00 0.00 3.02
196 200 6.447084 TCCCTCTATCCCAAAATAAGTGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
197 201 5.970640 TCCCTCTATCCCAAAATAAGTGTCT 59.029 40.000 0.00 0.00 0.00 3.41
198 202 6.126739 ACTCCCTCTATCCCAAAATAAGTGTC 60.127 42.308 0.00 0.00 0.00 3.67
199 203 5.731678 ACTCCCTCTATCCCAAAATAAGTGT 59.268 40.000 0.00 0.00 0.00 3.55
200 204 6.253946 ACTCCCTCTATCCCAAAATAAGTG 57.746 41.667 0.00 0.00 0.00 3.16
201 205 7.140304 AGTACTCCCTCTATCCCAAAATAAGT 58.860 38.462 0.00 0.00 0.00 2.24
202 206 7.619512 AGTACTCCCTCTATCCCAAAATAAG 57.380 40.000 0.00 0.00 0.00 1.73
203 207 7.849904 AGAAGTACTCCCTCTATCCCAAAATAA 59.150 37.037 0.00 0.00 0.00 1.40
204 208 7.371043 AGAAGTACTCCCTCTATCCCAAAATA 58.629 38.462 0.00 0.00 0.00 1.40
205 209 6.213525 AGAAGTACTCCCTCTATCCCAAAAT 58.786 40.000 0.00 0.00 0.00 1.82
206 210 5.600749 AGAAGTACTCCCTCTATCCCAAAA 58.399 41.667 0.00 0.00 0.00 2.44
207 211 5.222278 AGAAGTACTCCCTCTATCCCAAA 57.778 43.478 0.00 0.00 0.00 3.28
208 212 4.901785 AGAAGTACTCCCTCTATCCCAA 57.098 45.455 0.00 0.00 0.00 4.12
209 213 4.901785 AAGAAGTACTCCCTCTATCCCA 57.098 45.455 0.00 0.00 0.00 4.37
210 214 4.278919 CGAAAGAAGTACTCCCTCTATCCC 59.721 50.000 0.00 0.00 0.00 3.85
211 215 5.131784 TCGAAAGAAGTACTCCCTCTATCC 58.868 45.833 0.00 0.00 37.03 2.59
237 241 7.606073 GGGCCAAATACATTTTGTTGTTATTCT 59.394 33.333 4.39 0.00 0.00 2.40
240 244 6.773638 TGGGCCAAATACATTTTGTTGTTAT 58.226 32.000 2.13 0.00 0.00 1.89
249 253 2.901291 ACCACTGGGCCAAATACATTT 58.099 42.857 8.04 0.00 37.90 2.32
255 259 1.341080 CAAGAACCACTGGGCCAAAT 58.659 50.000 8.04 0.00 37.90 2.32
261 265 1.156736 CTAACGCAAGAACCACTGGG 58.843 55.000 0.00 0.00 43.62 4.45
292 296 0.244994 GACCTCTGCATCACACGTCT 59.755 55.000 0.00 0.00 0.00 4.18
293 297 1.073216 CGACCTCTGCATCACACGTC 61.073 60.000 0.00 0.00 0.00 4.34
294 298 1.080501 CGACCTCTGCATCACACGT 60.081 57.895 0.00 0.00 0.00 4.49
295 299 0.388520 TTCGACCTCTGCATCACACG 60.389 55.000 0.00 0.00 0.00 4.49
297 301 1.344438 AGTTTCGACCTCTGCATCACA 59.656 47.619 0.00 0.00 0.00 3.58
366 371 4.290622 AGGCTGGCCCAACACCTG 62.291 66.667 8.11 0.00 36.58 4.00
372 377 2.276409 CATAGCAGGCTGGCCCAA 59.724 61.111 17.64 0.00 36.58 4.12
379 384 1.676746 CAGACAATGCATAGCAGGCT 58.323 50.000 0.00 0.00 43.65 4.58
404 409 4.776322 CCGGTTGGCGCTCCATGA 62.776 66.667 7.64 0.00 43.05 3.07
414 419 3.195698 GCTCTAAGCGCCGGTTGG 61.196 66.667 12.40 9.14 38.77 3.77
415 420 2.434185 TGCTCTAAGCGCCGGTTG 60.434 61.111 12.40 2.08 46.26 3.77
416 421 2.434359 GTGCTCTAAGCGCCGGTT 60.434 61.111 6.80 6.80 46.26 4.44
422 427 0.527817 CCTAACCGGTGCTCTAAGCG 60.528 60.000 8.52 0.00 46.26 4.68
423 428 0.822164 TCCTAACCGGTGCTCTAAGC 59.178 55.000 8.52 0.00 42.82 3.09
424 429 1.202428 GCTCCTAACCGGTGCTCTAAG 60.202 57.143 8.52 2.50 46.33 2.18
425 430 0.822164 GCTCCTAACCGGTGCTCTAA 59.178 55.000 8.52 0.00 46.33 2.10
426 431 2.501492 GCTCCTAACCGGTGCTCTA 58.499 57.895 8.52 0.00 46.33 2.43
427 432 3.300013 GCTCCTAACCGGTGCTCT 58.700 61.111 8.52 0.00 46.33 4.09
431 436 1.686110 AGGGAGCTCCTAACCGGTG 60.686 63.158 31.36 0.00 45.98 4.94
432 437 2.778562 AGGGAGCTCCTAACCGGT 59.221 61.111 31.36 0.00 45.98 5.28
462 467 0.667487 CCAGCTATACATCCACGCGG 60.667 60.000 12.47 0.00 0.00 6.46
480 485 2.196776 CCCATGACCCATCTGGCC 59.803 66.667 0.00 0.00 37.83 5.36
538 543 2.814919 CCGGCACAACCAGTTTATAACA 59.185 45.455 0.00 0.00 39.03 2.41
563 568 3.499737 GCGGATTGGCAGTGTCGG 61.500 66.667 0.00 0.00 0.00 4.79
571 576 4.580551 GCATGGCAGCGGATTGGC 62.581 66.667 0.00 0.00 43.38 4.52
572 577 3.908081 GGCATGGCAGCGGATTGG 61.908 66.667 15.47 0.00 34.64 3.16
573 578 2.831742 AGGCATGGCAGCGGATTG 60.832 61.111 22.64 0.00 34.64 2.67
574 579 2.831742 CAGGCATGGCAGCGGATT 60.832 61.111 22.64 0.00 34.64 3.01
575 580 3.650298 AACAGGCATGGCAGCGGAT 62.650 57.895 22.64 0.00 34.64 4.18
576 581 4.349503 AACAGGCATGGCAGCGGA 62.350 61.111 22.64 0.00 34.64 5.54
577 582 3.818787 GAACAGGCATGGCAGCGG 61.819 66.667 22.64 10.10 34.64 5.52
578 583 2.749044 AGAACAGGCATGGCAGCG 60.749 61.111 22.64 11.66 34.64 5.18
579 584 2.707849 CCAGAACAGGCATGGCAGC 61.708 63.158 22.64 7.27 0.00 5.25
597 602 2.267961 CACACGGGCCTAACCTCC 59.732 66.667 0.84 0.00 39.10 4.30
603 608 3.266686 ATGCTTGCACACGGGCCTA 62.267 57.895 0.84 0.00 0.00 3.93
616 621 0.319083 TAACGGGTCGTGTCATGCTT 59.681 50.000 0.00 0.00 39.99 3.91
641 646 8.954950 TGCACAAAATAAAAGAAATCAGGAAA 57.045 26.923 0.00 0.00 0.00 3.13
695 702 5.047519 GCGTATTATCCAACCTTCTAGGCTA 60.048 44.000 0.00 0.00 39.63 3.93
703 710 2.572290 GCCAGCGTATTATCCAACCTT 58.428 47.619 0.00 0.00 0.00 3.50
745 752 2.227194 CTGTATTAAATGGGCCGGACC 58.773 52.381 23.70 23.70 37.93 4.46
747 754 1.144093 CCCTGTATTAAATGGGCCGGA 59.856 52.381 5.05 0.00 32.49 5.14
776 783 1.750399 CATTTGCCCCCAGGTCGAG 60.750 63.158 0.00 0.00 34.57 4.04
777 784 2.354729 CATTTGCCCCCAGGTCGA 59.645 61.111 0.00 0.00 34.57 4.20
778 785 2.755469 CCATTTGCCCCCAGGTCG 60.755 66.667 0.00 0.00 34.57 4.79
902 2358 0.246086 GCCTCCTGTGACTGTGAGAG 59.754 60.000 8.67 0.00 0.00 3.20
903 2359 0.178950 AGCCTCCTGTGACTGTGAGA 60.179 55.000 8.67 0.00 0.00 3.27
977 2470 3.411351 CGTGGGGTGCTCGTTTCG 61.411 66.667 0.00 0.00 0.00 3.46
1609 3108 5.516996 TCGCAAGTAAATACCGAGATACTG 58.483 41.667 0.00 0.00 39.48 2.74
1610 3109 5.762825 TCGCAAGTAAATACCGAGATACT 57.237 39.130 0.00 0.00 39.48 2.12
1738 3238 9.528489 AATAACCACAAACTACACTATGGAAAT 57.472 29.630 0.00 0.00 0.00 2.17
1745 3245 8.426489 AGAGAACAATAACCACAAACTACACTA 58.574 33.333 0.00 0.00 0.00 2.74
1855 3355 4.440758 CGCACAATCCAAAAACTAAGTGTG 59.559 41.667 0.00 0.00 38.47 3.82
1903 3403 4.846779 TTTGTGTGGTTCAAGCTAATCC 57.153 40.909 0.00 0.00 0.00 3.01
1927 3427 7.976175 CCATTTCTTTCTAACTATTTTCCCAGC 59.024 37.037 0.00 0.00 0.00 4.85
1949 3449 1.873698 ACAGTGCGACGTAAACCATT 58.126 45.000 0.00 0.00 0.00 3.16
1957 3457 4.239304 TCAACAATTATACAGTGCGACGT 58.761 39.130 0.00 0.00 0.00 4.34
2122 3633 9.719355 TCAATGTAACATGCTAGAAAGTAGAAA 57.281 29.630 0.00 0.00 0.00 2.52
2123 3634 9.890629 ATCAATGTAACATGCTAGAAAGTAGAA 57.109 29.630 0.00 0.00 0.00 2.10
2124 3635 9.890629 AATCAATGTAACATGCTAGAAAGTAGA 57.109 29.630 0.00 0.00 0.00 2.59
2127 3638 8.246180 CCAAATCAATGTAACATGCTAGAAAGT 58.754 33.333 0.00 0.00 0.00 2.66
2128 3639 8.246180 ACCAAATCAATGTAACATGCTAGAAAG 58.754 33.333 0.00 0.00 0.00 2.62
2171 3682 3.632643 TGTTCTTGATGCATAGCCTCA 57.367 42.857 0.00 0.00 31.88 3.86
2255 3766 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2256 3767 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2257 3768 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2258 3769 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2259 3770 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2260 3771 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2261 3772 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2262 3773 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2263 3774 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2264 3775 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2265 3776 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2266 3777 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
2267 3778 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
2268 3779 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
2269 3780 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
2270 3781 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
2271 3782 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
2272 3783 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
2273 3784 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
2274 3785 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
2275 3786 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
2276 3787 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
2277 3788 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
2278 3789 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
2302 3813 6.756074 GTCTCGACTTTGTACTAGCTCTAGTA 59.244 42.308 11.59 11.59 43.98 1.82
2304 3815 5.581479 TGTCTCGACTTTGTACTAGCTCTAG 59.419 44.000 0.00 2.55 39.04 2.43
2305 3816 5.350914 GTGTCTCGACTTTGTACTAGCTCTA 59.649 44.000 0.00 0.00 0.00 2.43
2306 3817 4.154556 GTGTCTCGACTTTGTACTAGCTCT 59.845 45.833 0.00 0.00 0.00 4.09
2307 3818 4.154556 AGTGTCTCGACTTTGTACTAGCTC 59.845 45.833 0.00 0.00 0.00 4.09
2308 3819 4.073549 AGTGTCTCGACTTTGTACTAGCT 58.926 43.478 0.00 0.00 0.00 3.32
2309 3820 4.422546 AGTGTCTCGACTTTGTACTAGC 57.577 45.455 0.00 0.00 0.00 3.42
2310 3821 8.967552 AAATAAGTGTCTCGACTTTGTACTAG 57.032 34.615 0.00 0.00 37.38 2.57
2311 3822 9.188588 CAAAATAAGTGTCTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
2312 3823 7.170998 CCAAAATAAGTGTCTCGACTTTGTACT 59.829 37.037 0.00 0.00 37.38 2.73
2313 3824 7.288672 CCAAAATAAGTGTCTCGACTTTGTAC 58.711 38.462 0.00 0.00 37.38 2.90
2314 3825 6.425721 CCCAAAATAAGTGTCTCGACTTTGTA 59.574 38.462 0.00 0.00 37.38 2.41
2315 3826 5.238650 CCCAAAATAAGTGTCTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
2316 3827 5.468746 TCCCAAAATAAGTGTCTCGACTTTG 59.531 40.000 0.00 0.61 37.38 2.77
2317 3828 5.469084 GTCCCAAAATAAGTGTCTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
2318 3829 4.995487 GTCCCAAAATAAGTGTCTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
2319 3830 4.566987 GTCCCAAAATAAGTGTCTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
2320 3831 3.367025 CGTCCCAAAATAAGTGTCTCGAC 59.633 47.826 0.00 0.00 0.00 4.20
2321 3832 3.581755 CGTCCCAAAATAAGTGTCTCGA 58.418 45.455 0.00 0.00 0.00 4.04
2322 3833 2.671396 CCGTCCCAAAATAAGTGTCTCG 59.329 50.000 0.00 0.00 0.00 4.04
2323 3834 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2324 3835 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2325 3836 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2326 3837 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2327 3838 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2328 3839 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2329 3840 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2330 3841 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2331 3842 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2332 3843 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2333 3844 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2334 3845 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2335 3846 2.090943 ACATATACTCCCTCCGTCCCAA 60.091 50.000 0.00 0.00 0.00 4.12
2336 3847 1.502039 ACATATACTCCCTCCGTCCCA 59.498 52.381 0.00 0.00 0.00 4.37
2337 3848 2.169330 GACATATACTCCCTCCGTCCC 58.831 57.143 0.00 0.00 0.00 4.46
2338 3849 2.820787 CTGACATATACTCCCTCCGTCC 59.179 54.545 0.00 0.00 0.00 4.79
2339 3850 3.488363 ACTGACATATACTCCCTCCGTC 58.512 50.000 0.00 0.00 0.00 4.79
2340 3851 3.596940 ACTGACATATACTCCCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
2341 3852 3.889538 TGAACTGACATATACTCCCTCCG 59.110 47.826 0.00 0.00 0.00 4.63
2342 3853 6.426646 AATGAACTGACATATACTCCCTCC 57.573 41.667 0.00 0.00 0.00 4.30
2343 3854 8.184304 ACTAATGAACTGACATATACTCCCTC 57.816 38.462 0.00 0.00 0.00 4.30
2344 3855 9.830186 ATACTAATGAACTGACATATACTCCCT 57.170 33.333 0.00 0.00 0.00 4.20
2454 3965 1.206132 CCCATACTCACGTGCCTGTTA 59.794 52.381 11.67 0.00 0.00 2.41
2490 4001 3.505808 GCTCCATAGCTCGATGTCC 57.494 57.895 0.00 0.00 45.85 4.02
2658 4169 7.472334 AAGTGCATTAACTGAGATGGAAAAT 57.528 32.000 0.00 0.00 0.00 1.82
2659 4170 6.899393 AAGTGCATTAACTGAGATGGAAAA 57.101 33.333 0.00 0.00 0.00 2.29
2680 4191 5.348179 TGTGACAGCAAACAACAAATCAAAG 59.652 36.000 0.00 0.00 0.00 2.77
2682 4193 4.814147 TGTGACAGCAAACAACAAATCAA 58.186 34.783 0.00 0.00 0.00 2.57
2715 4226 5.612725 TTTTCTTGTTTCCCTTTGCAGAT 57.387 34.783 0.00 0.00 0.00 2.90
2717 4228 6.682423 AAATTTTCTTGTTTCCCTTTGCAG 57.318 33.333 0.00 0.00 0.00 4.41
2766 4277 7.220683 GCGTTTACCGTATATCTAGAACAAACA 59.779 37.037 0.00 0.00 39.32 2.83
2783 4294 5.930405 ACTACAAATTTAAGGCGTTTACCG 58.070 37.500 0.00 0.00 40.40 4.02
2796 4307 5.767665 TGCACCACAGACATACTACAAATTT 59.232 36.000 0.00 0.00 0.00 1.82
2828 4339 1.378882 CCTGCATGGATGGTTGGACG 61.379 60.000 0.00 0.00 38.35 4.79
2829 4340 0.323725 ACCTGCATGGATGGTTGGAC 60.324 55.000 8.91 0.00 39.71 4.02
2830 4341 0.409092 AACCTGCATGGATGGTTGGA 59.591 50.000 16.37 0.00 41.87 3.53
2831 4342 2.980541 AACCTGCATGGATGGTTGG 58.019 52.632 16.37 4.45 41.87 3.77
2833 4344 2.279842 GCAACCTGCATGGATGGTT 58.720 52.632 12.92 12.92 44.26 3.67
2847 4358 7.706607 GGAAAAGTTATTGAGAATATGGGCAAC 59.293 37.037 0.00 0.00 0.00 4.17
3149 4864 5.562307 GCCATGCAGATACATTAGAAAGCAG 60.562 44.000 0.00 0.00 33.94 4.24
3277 4992 2.480845 ACAACTACTCTGTTCGCCAAC 58.519 47.619 0.00 0.00 0.00 3.77
3329 5044 9.882996 AAATAATCAATCTGTATAACACATGCG 57.117 29.630 0.00 0.00 36.29 4.73
3347 5062 6.418057 ACCCAAGAGCAACAAAAATAATCA 57.582 33.333 0.00 0.00 0.00 2.57
3413 5129 7.383843 CGTAAACTTTTCAAAGCATTAACCCAT 59.616 33.333 0.00 0.00 39.63 4.00
3699 5415 7.773224 TCAAGTTAAGAAGTCTTCACAATGGAA 59.227 33.333 14.97 0.00 37.40 3.53
3700 5416 7.279615 TCAAGTTAAGAAGTCTTCACAATGGA 58.720 34.615 14.97 1.82 37.40 3.41
3766 5482 4.672587 ATTCTGAAGCAGCCTTACGATA 57.327 40.909 0.00 0.00 0.00 2.92
3792 5509 3.429207 GTGCTTTCTCGTTAGAAGGTGAC 59.571 47.826 0.00 0.00 42.60 3.67
3866 5583 9.150348 CGCAAATGGTGATGTATACTATAATCA 57.850 33.333 4.17 2.17 0.00 2.57
3883 5600 2.560504 TCTTATCGATGCGCAAATGGT 58.439 42.857 17.11 5.97 0.00 3.55
3932 5649 7.827236 CCTAGTTTAAGTTAATGATGGTGACCA 59.173 37.037 6.84 6.84 38.19 4.02
4005 5726 8.613060 TGCTATCTCCAATTATCTCAAATGAC 57.387 34.615 0.00 0.00 0.00 3.06
4025 5746 1.043116 TGCACTACGGCCTCTGCTAT 61.043 55.000 0.00 0.00 37.74 2.97
4114 5838 8.001292 AGAAGCCAGCTTATCCAGTTTATAATT 58.999 33.333 4.57 0.00 36.26 1.40
4161 5885 2.704464 TGTCTAGCTAGAGGTACGCA 57.296 50.000 23.87 13.81 32.01 5.24
4162 5886 3.125658 GCTATGTCTAGCTAGAGGTACGC 59.874 52.174 23.87 17.34 45.78 4.42
4309 6034 5.269189 TCACTCTGATACACACCCTCAATA 58.731 41.667 0.00 0.00 0.00 1.90
4315 6040 4.832248 TCAAATCACTCTGATACACACCC 58.168 43.478 0.00 0.00 35.76 4.61
4346 6071 1.812571 AGCTGAAACTTAATGGTGCCG 59.187 47.619 0.00 0.00 0.00 5.69
4535 6260 8.244113 CCCTGTAATTGAAACTGGAGATAAAAC 58.756 37.037 4.74 0.00 37.98 2.43
4537 6262 7.466804 ACCCTGTAATTGAAACTGGAGATAAA 58.533 34.615 4.74 0.00 37.98 1.40
4581 6306 7.144000 GCCAGCAATATTCTATTTTCTTCAGG 58.856 38.462 0.00 0.00 0.00 3.86
4744 6469 3.694072 GCCAACTGCCATACAAATGACTA 59.306 43.478 0.00 0.00 34.84 2.59
4748 6473 4.717233 TTAGCCAACTGCCATACAAATG 57.283 40.909 0.00 0.00 42.71 2.32
4755 6480 2.756760 CACTGAATTAGCCAACTGCCAT 59.243 45.455 0.00 0.00 42.71 4.40
4789 6522 9.841295 ATGAAACAACTTACCTGTTAGTCTAAA 57.159 29.630 0.00 0.00 35.98 1.85
4800 6533 5.869649 AAGGCAAATGAAACAACTTACCT 57.130 34.783 0.00 0.00 0.00 3.08
4913 6646 8.002459 GGTAAACTTCCTATTGAATTATGGGGA 58.998 37.037 0.00 0.00 31.06 4.81
4930 6663 2.104859 GGCTCCCGCGGTAAACTTC 61.105 63.158 26.12 5.34 36.88 3.01
4933 6666 2.510918 GAGGCTCCCGCGGTAAAC 60.511 66.667 26.12 11.74 36.88 2.01
5097 6830 6.160684 ACACACTAAAACGTGTCTATATGCA 58.839 36.000 0.00 0.00 45.74 3.96
5098 6831 6.642683 ACACACTAAAACGTGTCTATATGC 57.357 37.500 0.00 0.00 45.74 3.14
5183 6922 1.420138 TCCCTCAGTCCCTTTGTTCAC 59.580 52.381 0.00 0.00 0.00 3.18
5189 6928 4.095211 GTTAGTACTCCCTCAGTCCCTTT 58.905 47.826 0.00 0.00 36.43 3.11
5191 6930 2.927685 AGTTAGTACTCCCTCAGTCCCT 59.072 50.000 0.00 0.00 36.43 4.20
5192 6931 3.385314 AGTTAGTACTCCCTCAGTCCC 57.615 52.381 0.00 0.00 36.43 4.46
5193 6932 3.884693 GCTAGTTAGTACTCCCTCAGTCC 59.115 52.174 0.00 0.00 36.43 3.85
5194 6933 4.525024 TGCTAGTTAGTACTCCCTCAGTC 58.475 47.826 0.00 0.00 36.43 3.51
5195 6934 4.587976 TGCTAGTTAGTACTCCCTCAGT 57.412 45.455 0.00 0.00 39.41 3.41
5196 6935 4.279671 CCATGCTAGTTAGTACTCCCTCAG 59.720 50.000 0.00 0.00 35.78 3.35
5197 6936 4.215908 CCATGCTAGTTAGTACTCCCTCA 58.784 47.826 0.00 0.00 35.78 3.86
5198 6937 4.216708 ACCATGCTAGTTAGTACTCCCTC 58.783 47.826 0.00 0.00 35.78 4.30
5255 6994 8.960591 CCATTACAAGGAAAATCACATTCTAGT 58.039 33.333 0.00 0.00 0.00 2.57
5256 6995 7.917505 GCCATTACAAGGAAAATCACATTCTAG 59.082 37.037 0.00 0.00 0.00 2.43
5257 6996 7.615365 AGCCATTACAAGGAAAATCACATTCTA 59.385 33.333 0.00 0.00 0.00 2.10
5259 6998 6.532657 CAGCCATTACAAGGAAAATCACATTC 59.467 38.462 0.00 0.00 0.00 2.67
5260 6999 6.211184 TCAGCCATTACAAGGAAAATCACATT 59.789 34.615 0.00 0.00 0.00 2.71
5261 7000 5.716228 TCAGCCATTACAAGGAAAATCACAT 59.284 36.000 0.00 0.00 0.00 3.21
5264 7003 5.324409 AGTCAGCCATTACAAGGAAAATCA 58.676 37.500 0.00 0.00 0.00 2.57
5265 7004 5.904362 AGTCAGCCATTACAAGGAAAATC 57.096 39.130 0.00 0.00 0.00 2.17
5266 7005 6.670695 AAAGTCAGCCATTACAAGGAAAAT 57.329 33.333 0.00 0.00 0.00 1.82
5267 7006 6.478512 AAAAGTCAGCCATTACAAGGAAAA 57.521 33.333 0.00 0.00 0.00 2.29
5282 7021 7.437748 AGATAAGGGATGTCGATAAAAGTCAG 58.562 38.462 0.00 0.00 0.00 3.51
5346 7085 8.491958 GGGGGTAAGAGAGATTTAAAGAACATA 58.508 37.037 0.00 0.00 0.00 2.29
5347 7086 7.184753 AGGGGGTAAGAGAGATTTAAAGAACAT 59.815 37.037 0.00 0.00 0.00 2.71
5529 7268 1.143073 GACACCAAAGTCCTGTCCCTT 59.857 52.381 0.00 0.00 32.36 3.95
5562 7301 3.443681 TGCTTTAGGTTTGAGCAATAGGC 59.556 43.478 0.00 0.00 42.89 3.93
5571 7310 4.890088 ACATCGTAGTGCTTTAGGTTTGA 58.110 39.130 0.00 0.00 0.00 2.69
5585 7324 6.363626 GCCAAATCATGTAGAGTACATCGTAG 59.636 42.308 0.00 0.00 45.83 3.51
5621 7360 1.110442 CCACTGCTGTGACCCAAAAA 58.890 50.000 23.75 0.00 46.55 1.94
5627 7366 1.302033 CTCCACCACTGCTGTGACC 60.302 63.158 23.75 0.00 46.55 4.02
5641 7380 3.171528 CTCATCTATGATCCTGGCTCCA 58.828 50.000 0.00 0.00 36.02 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.