Multiple sequence alignment - TraesCS2D01G188900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G188900 chr2D 100.000 4704 0 0 1 4704 132292205 132296908 0.000000e+00 8687.0
1 TraesCS2D01G188900 chr2D 94.847 2193 86 12 985 3164 132695111 132697289 0.000000e+00 3398.0
2 TraesCS2D01G188900 chr2D 83.904 1168 167 17 985 2141 131765401 131766558 0.000000e+00 1096.0
3 TraesCS2D01G188900 chr2D 94.507 619 26 5 4035 4651 132699798 132700410 0.000000e+00 948.0
4 TraesCS2D01G188900 chr2D 85.947 797 87 12 3186 3970 132698994 132699777 0.000000e+00 828.0
5 TraesCS2D01G188900 chr2A 94.461 3755 157 31 978 4704 140358026 140361757 0.000000e+00 5734.0
6 TraesCS2D01G188900 chr2A 91.495 2187 142 20 2525 4702 139510835 139512986 0.000000e+00 2968.0
7 TraesCS2D01G188900 chr2A 85.945 1174 136 24 985 2145 139509167 139510324 0.000000e+00 1227.0
8 TraesCS2D01G188900 chr2B 93.173 3750 189 27 985 4704 188460841 188464553 0.000000e+00 5445.0
9 TraesCS2D01G188900 chr2B 83.616 1178 162 23 985 2145 185769873 185771036 0.000000e+00 1077.0
10 TraesCS2D01G188900 chr2B 91.897 580 41 2 985 1558 186375501 186374922 0.000000e+00 806.0
11 TraesCS2D01G188900 chr2B 100.000 29 0 0 107 135 758791607 758791635 2.000000e-03 54.7
12 TraesCS2D01G188900 chr4D 85.651 453 50 13 333 776 453146746 453147192 3.320000e-126 462.0
13 TraesCS2D01G188900 chr7D 80.153 262 50 2 3424 3684 89942250 89941990 1.340000e-45 195.0
14 TraesCS2D01G188900 chr4A 100.000 29 0 0 107 135 617477757 617477785 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G188900 chr2D 132292205 132296908 4703 False 8687.000000 8687 100.000 1 4704 1 chr2D.!!$F2 4703
1 TraesCS2D01G188900 chr2D 132695111 132700410 5299 False 1724.666667 3398 91.767 985 4651 3 chr2D.!!$F3 3666
2 TraesCS2D01G188900 chr2D 131765401 131766558 1157 False 1096.000000 1096 83.904 985 2141 1 chr2D.!!$F1 1156
3 TraesCS2D01G188900 chr2A 140358026 140361757 3731 False 5734.000000 5734 94.461 978 4704 1 chr2A.!!$F1 3726
4 TraesCS2D01G188900 chr2A 139509167 139512986 3819 False 2097.500000 2968 88.720 985 4702 2 chr2A.!!$F2 3717
5 TraesCS2D01G188900 chr2B 188460841 188464553 3712 False 5445.000000 5445 93.173 985 4704 1 chr2B.!!$F2 3719
6 TraesCS2D01G188900 chr2B 185769873 185771036 1163 False 1077.000000 1077 83.616 985 2145 1 chr2B.!!$F1 1160
7 TraesCS2D01G188900 chr2B 186374922 186375501 579 True 806.000000 806 91.897 985 1558 1 chr2B.!!$R1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.118346 ACTACTCCACATCCCCCACA 59.882 55.000 0.0 0.0 0.0 4.17 F
283 284 0.175760 ACCACTACGCCACTATGCAG 59.824 55.000 0.0 0.0 0.0 4.41 F
284 285 0.459899 CCACTACGCCACTATGCAGA 59.540 55.000 0.0 0.0 0.0 4.26 F
909 910 0.469144 TTGGAAGAGGTTGTTGGGCC 60.469 55.000 0.0 0.0 0.0 5.80 F
974 975 1.376037 AGAAGGCGCCGAAAAGGAG 60.376 57.895 23.2 0.0 45.0 3.69 F
1599 1615 1.681538 TCGCCTCTGTCTACTCATCC 58.318 55.000 0.0 0.0 0.0 3.51 F
3340 5330 0.676782 AAGCGGGGATTTGGAACGAG 60.677 55.000 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1615 1.302033 GCCCCATATGCCAGACTCG 60.302 63.158 0.0 0.0 0.00 4.18 R
1800 1822 1.762957 GCTACCATGACCTGAAGGCTA 59.237 52.381 0.0 0.0 39.32 3.93 R
1879 1901 2.455674 TCATCACAACTGACCTTCCG 57.544 50.000 0.0 0.0 0.00 4.30 R
2071 2104 2.559698 TTGTCTTTGCCGAGATTCCA 57.440 45.000 0.0 0.0 0.00 3.53 R
2960 3261 0.531974 TGCAAAGACGTCACCAGTCC 60.532 55.000 19.5 0.0 39.31 3.85 R
3356 5346 0.108585 GTCAAGGCCCAAGTCAGACA 59.891 55.000 0.0 0.0 0.00 3.41 R
4467 6483 0.109132 CAATGTTGGAAGCGAAGGCC 60.109 55.000 0.0 0.0 41.24 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.887996 TGATTTAACCAATTCATCAAAGCAC 57.112 32.000 0.00 0.00 0.00 4.40
26 27 7.669427 TGATTTAACCAATTCATCAAAGCACT 58.331 30.769 0.00 0.00 0.00 4.40
27 28 7.599621 TGATTTAACCAATTCATCAAAGCACTG 59.400 33.333 0.00 0.00 0.00 3.66
28 29 6.647334 TTAACCAATTCATCAAAGCACTGA 57.353 33.333 0.00 0.00 0.00 3.41
29 30 5.534207 AACCAATTCATCAAAGCACTGAA 57.466 34.783 0.00 0.00 33.75 3.02
30 31 5.534207 ACCAATTCATCAAAGCACTGAAA 57.466 34.783 0.00 0.00 33.03 2.69
31 32 6.105397 ACCAATTCATCAAAGCACTGAAAT 57.895 33.333 0.00 0.00 33.03 2.17
32 33 6.527423 ACCAATTCATCAAAGCACTGAAATT 58.473 32.000 0.00 0.00 33.03 1.82
33 34 7.669427 ACCAATTCATCAAAGCACTGAAATTA 58.331 30.769 0.00 0.00 33.03 1.40
34 35 7.816031 ACCAATTCATCAAAGCACTGAAATTAG 59.184 33.333 0.00 0.00 33.03 1.73
35 36 8.030692 CCAATTCATCAAAGCACTGAAATTAGA 58.969 33.333 0.00 0.00 33.03 2.10
36 37 8.857216 CAATTCATCAAAGCACTGAAATTAGAC 58.143 33.333 0.00 0.00 33.03 2.59
37 38 7.509141 TTCATCAAAGCACTGAAATTAGACA 57.491 32.000 0.00 0.00 0.00 3.41
38 39 7.692460 TCATCAAAGCACTGAAATTAGACAT 57.308 32.000 0.00 0.00 0.00 3.06
39 40 7.755591 TCATCAAAGCACTGAAATTAGACATC 58.244 34.615 0.00 0.00 0.00 3.06
40 41 7.609146 TCATCAAAGCACTGAAATTAGACATCT 59.391 33.333 0.00 0.00 0.00 2.90
41 42 7.369803 TCAAAGCACTGAAATTAGACATCTC 57.630 36.000 0.00 0.00 0.00 2.75
42 43 6.936335 TCAAAGCACTGAAATTAGACATCTCA 59.064 34.615 0.00 0.00 0.00 3.27
43 44 7.609146 TCAAAGCACTGAAATTAGACATCTCAT 59.391 33.333 0.00 0.00 0.00 2.90
44 45 6.922247 AGCACTGAAATTAGACATCTCATG 57.078 37.500 0.00 0.00 0.00 3.07
45 46 5.821470 AGCACTGAAATTAGACATCTCATGG 59.179 40.000 0.00 0.00 33.60 3.66
46 47 5.008415 GCACTGAAATTAGACATCTCATGGG 59.992 44.000 0.00 0.00 33.60 4.00
47 48 5.008415 CACTGAAATTAGACATCTCATGGGC 59.992 44.000 0.00 0.00 33.60 5.36
48 49 4.464008 TGAAATTAGACATCTCATGGGCC 58.536 43.478 0.00 0.00 33.60 5.80
49 50 2.847327 ATTAGACATCTCATGGGCCG 57.153 50.000 0.00 0.00 33.60 6.13
50 51 0.758734 TTAGACATCTCATGGGCCGG 59.241 55.000 0.00 0.00 33.60 6.13
51 52 1.758440 TAGACATCTCATGGGCCGGC 61.758 60.000 21.18 21.18 33.60 6.13
52 53 4.195334 ACATCTCATGGGCCGGCC 62.195 66.667 38.57 38.57 33.60 6.13
53 54 4.193893 CATCTCATGGGCCGGCCA 62.194 66.667 44.46 30.82 37.98 5.36
54 55 3.882326 ATCTCATGGGCCGGCCAG 61.882 66.667 44.46 32.68 37.98 4.85
67 68 2.521708 GCCAGGGCCACAAACAGT 60.522 61.111 6.18 0.00 34.56 3.55
68 69 2.564721 GCCAGGGCCACAAACAGTC 61.565 63.158 6.18 0.00 34.56 3.51
69 70 2.260869 CCAGGGCCACAAACAGTCG 61.261 63.158 6.18 0.00 0.00 4.18
70 71 1.227823 CAGGGCCACAAACAGTCGA 60.228 57.895 6.18 0.00 0.00 4.20
71 72 1.227853 AGGGCCACAAACAGTCGAC 60.228 57.895 7.70 7.70 0.00 4.20
72 73 1.525077 GGGCCACAAACAGTCGACA 60.525 57.895 19.50 0.00 0.00 4.35
73 74 1.507141 GGGCCACAAACAGTCGACAG 61.507 60.000 19.50 12.96 0.00 3.51
74 75 0.814010 GGCCACAAACAGTCGACAGT 60.814 55.000 19.50 13.74 0.00 3.55
75 76 0.582005 GCCACAAACAGTCGACAGTC 59.418 55.000 19.50 0.00 0.00 3.51
76 77 1.806623 GCCACAAACAGTCGACAGTCT 60.807 52.381 19.50 0.00 0.00 3.24
77 78 2.545113 GCCACAAACAGTCGACAGTCTA 60.545 50.000 19.50 0.00 0.00 2.59
78 79 3.050619 CCACAAACAGTCGACAGTCTAC 58.949 50.000 19.50 0.00 0.00 2.59
79 80 3.243434 CCACAAACAGTCGACAGTCTACT 60.243 47.826 19.50 1.80 0.00 2.57
80 81 4.023450 CCACAAACAGTCGACAGTCTACTA 60.023 45.833 19.50 0.00 0.00 1.82
81 82 4.910456 CACAAACAGTCGACAGTCTACTAC 59.090 45.833 19.50 0.00 0.00 2.73
82 83 4.820716 ACAAACAGTCGACAGTCTACTACT 59.179 41.667 19.50 0.00 39.81 2.57
83 84 5.049543 ACAAACAGTCGACAGTCTACTACTC 60.050 44.000 19.50 0.00 35.76 2.59
84 85 3.598299 ACAGTCGACAGTCTACTACTCC 58.402 50.000 19.50 0.00 35.76 3.85
85 86 3.007723 ACAGTCGACAGTCTACTACTCCA 59.992 47.826 19.50 0.00 35.76 3.86
86 87 3.371591 CAGTCGACAGTCTACTACTCCAC 59.628 52.174 19.50 0.00 35.76 4.02
87 88 3.007723 AGTCGACAGTCTACTACTCCACA 59.992 47.826 19.50 0.00 35.76 4.17
88 89 3.940221 GTCGACAGTCTACTACTCCACAT 59.060 47.826 11.55 0.00 35.76 3.21
89 90 4.034279 GTCGACAGTCTACTACTCCACATC 59.966 50.000 11.55 0.00 35.76 3.06
90 91 3.312973 CGACAGTCTACTACTCCACATCC 59.687 52.174 0.00 0.00 35.76 3.51
91 92 3.633065 GACAGTCTACTACTCCACATCCC 59.367 52.174 0.00 0.00 35.76 3.85
92 93 2.959707 CAGTCTACTACTCCACATCCCC 59.040 54.545 0.00 0.00 35.76 4.81
93 94 2.091222 AGTCTACTACTCCACATCCCCC 60.091 54.545 0.00 0.00 30.33 5.40
94 95 1.934480 TCTACTACTCCACATCCCCCA 59.066 52.381 0.00 0.00 0.00 4.96
95 96 2.040178 CTACTACTCCACATCCCCCAC 58.960 57.143 0.00 0.00 0.00 4.61
96 97 0.118346 ACTACTCCACATCCCCCACA 59.882 55.000 0.00 0.00 0.00 4.17
97 98 0.541863 CTACTCCACATCCCCCACAC 59.458 60.000 0.00 0.00 0.00 3.82
98 99 0.912487 TACTCCACATCCCCCACACC 60.912 60.000 0.00 0.00 0.00 4.16
99 100 2.938798 TCCACATCCCCCACACCC 60.939 66.667 0.00 0.00 0.00 4.61
100 101 3.264052 CCACATCCCCCACACCCA 61.264 66.667 0.00 0.00 0.00 4.51
101 102 2.625460 CCACATCCCCCACACCCAT 61.625 63.158 0.00 0.00 0.00 4.00
102 103 1.076777 CACATCCCCCACACCCATC 60.077 63.158 0.00 0.00 0.00 3.51
103 104 2.316586 ACATCCCCCACACCCATCC 61.317 63.158 0.00 0.00 0.00 3.51
104 105 2.129397 ATCCCCCACACCCATCCA 59.871 61.111 0.00 0.00 0.00 3.41
105 106 2.008723 ATCCCCCACACCCATCCAG 61.009 63.158 0.00 0.00 0.00 3.86
106 107 3.743017 CCCCCACACCCATCCAGG 61.743 72.222 0.00 0.00 37.03 4.45
124 125 1.153647 GGCAAACCCTATTTGGCGC 60.154 57.895 9.75 0.00 43.33 6.53
125 126 1.604147 GGCAAACCCTATTTGGCGCT 61.604 55.000 7.64 0.00 43.33 5.92
126 127 0.458370 GCAAACCCTATTTGGCGCTG 60.458 55.000 7.64 0.00 0.00 5.18
127 128 0.887933 CAAACCCTATTTGGCGCTGT 59.112 50.000 7.64 0.00 0.00 4.40
128 129 2.088423 CAAACCCTATTTGGCGCTGTA 58.912 47.619 7.64 0.00 0.00 2.74
129 130 2.038387 AACCCTATTTGGCGCTGTAG 57.962 50.000 7.64 4.73 0.00 2.74
130 131 0.180406 ACCCTATTTGGCGCTGTAGG 59.820 55.000 7.64 13.27 34.74 3.18
131 132 1.166531 CCCTATTTGGCGCTGTAGGC 61.167 60.000 7.64 0.00 33.84 3.93
141 142 4.514577 CTGTAGGCGCCGGTCCTG 62.515 72.222 23.20 10.22 35.21 3.86
173 174 2.525877 GGGCCGCCCATCTAGGTA 60.526 66.667 24.62 0.00 44.65 3.08
174 175 1.918800 GGGCCGCCCATCTAGGTAT 60.919 63.158 24.62 0.00 44.65 2.73
175 176 1.489560 GGGCCGCCCATCTAGGTATT 61.490 60.000 24.62 0.00 44.65 1.89
176 177 1.272807 GGCCGCCCATCTAGGTATTA 58.727 55.000 0.00 0.00 34.66 0.98
177 178 1.066358 GGCCGCCCATCTAGGTATTAC 60.066 57.143 0.00 0.00 34.66 1.89
178 179 1.900486 GCCGCCCATCTAGGTATTACT 59.100 52.381 0.00 0.00 34.66 2.24
179 180 2.302157 GCCGCCCATCTAGGTATTACTT 59.698 50.000 0.00 0.00 34.66 2.24
180 181 3.244457 GCCGCCCATCTAGGTATTACTTT 60.244 47.826 0.00 0.00 34.66 2.66
181 182 4.566987 CCGCCCATCTAGGTATTACTTTC 58.433 47.826 0.00 0.00 34.66 2.62
182 183 4.283722 CCGCCCATCTAGGTATTACTTTCT 59.716 45.833 0.00 0.00 34.66 2.52
183 184 5.230942 CGCCCATCTAGGTATTACTTTCTG 58.769 45.833 0.00 0.00 34.66 3.02
184 185 5.221461 CGCCCATCTAGGTATTACTTTCTGT 60.221 44.000 0.00 0.00 34.66 3.41
185 186 5.992217 GCCCATCTAGGTATTACTTTCTGTG 59.008 44.000 0.00 0.00 34.66 3.66
186 187 6.408206 GCCCATCTAGGTATTACTTTCTGTGT 60.408 42.308 0.00 0.00 34.66 3.72
187 188 7.565680 CCCATCTAGGTATTACTTTCTGTGTT 58.434 38.462 0.00 0.00 34.66 3.32
188 189 8.047310 CCCATCTAGGTATTACTTTCTGTGTTT 58.953 37.037 0.00 0.00 34.66 2.83
196 197 9.177304 GGTATTACTTTCTGTGTTTAAAACTGC 57.823 33.333 0.00 0.00 0.00 4.40
197 198 9.724839 GTATTACTTTCTGTGTTTAAAACTGCA 57.275 29.630 0.00 0.00 0.00 4.41
199 200 9.646427 ATTACTTTCTGTGTTTAAAACTGCAAA 57.354 25.926 0.00 0.00 0.00 3.68
200 201 7.954788 ACTTTCTGTGTTTAAAACTGCAAAA 57.045 28.000 0.00 0.00 0.00 2.44
201 202 8.371770 ACTTTCTGTGTTTAAAACTGCAAAAA 57.628 26.923 0.00 0.00 0.00 1.94
225 226 2.026734 CGACGCGCTGGATCTGAT 59.973 61.111 5.73 0.00 0.00 2.90
226 227 1.589993 CGACGCGCTGGATCTGATT 60.590 57.895 5.73 0.00 0.00 2.57
227 228 1.543941 CGACGCGCTGGATCTGATTC 61.544 60.000 5.73 0.00 0.00 2.52
228 229 1.543941 GACGCGCTGGATCTGATTCG 61.544 60.000 5.73 0.00 0.00 3.34
229 230 1.299392 CGCGCTGGATCTGATTCGA 60.299 57.895 5.56 0.00 0.00 3.71
230 231 0.871592 CGCGCTGGATCTGATTCGAA 60.872 55.000 5.56 0.00 0.00 3.71
231 232 0.579156 GCGCTGGATCTGATTCGAAC 59.421 55.000 0.00 0.00 0.00 3.95
232 233 1.212616 CGCTGGATCTGATTCGAACC 58.787 55.000 0.00 0.00 0.00 3.62
233 234 1.587547 GCTGGATCTGATTCGAACCC 58.412 55.000 0.00 0.00 0.00 4.11
234 235 1.858091 CTGGATCTGATTCGAACCCG 58.142 55.000 0.00 0.00 37.07 5.28
235 236 0.179084 TGGATCTGATTCGAACCCGC 60.179 55.000 0.00 0.00 35.37 6.13
236 237 1.215655 GGATCTGATTCGAACCCGCG 61.216 60.000 0.00 0.00 35.37 6.46
237 238 0.248907 GATCTGATTCGAACCCGCGA 60.249 55.000 8.23 0.00 38.72 5.87
238 239 0.527817 ATCTGATTCGAACCCGCGAC 60.528 55.000 8.23 0.00 40.42 5.19
239 240 2.125832 TGATTCGAACCCGCGACC 60.126 61.111 8.23 0.00 40.42 4.79
240 241 2.183555 GATTCGAACCCGCGACCT 59.816 61.111 8.23 0.00 40.42 3.85
241 242 1.877165 GATTCGAACCCGCGACCTC 60.877 63.158 8.23 0.00 40.42 3.85
242 243 3.366739 ATTCGAACCCGCGACCTCC 62.367 63.158 8.23 0.00 40.42 4.30
244 245 4.796231 CGAACCCGCGACCTCCTG 62.796 72.222 8.23 0.00 0.00 3.86
245 246 3.379445 GAACCCGCGACCTCCTGA 61.379 66.667 8.23 0.00 0.00 3.86
246 247 3.644399 GAACCCGCGACCTCCTGAC 62.644 68.421 8.23 0.00 0.00 3.51
249 250 2.439701 CCGCGACCTCCTGACCTA 60.440 66.667 8.23 0.00 0.00 3.08
250 251 2.482333 CCGCGACCTCCTGACCTAG 61.482 68.421 8.23 0.00 0.00 3.02
251 252 1.451567 CGCGACCTCCTGACCTAGA 60.452 63.158 0.00 0.00 0.00 2.43
252 253 0.820074 CGCGACCTCCTGACCTAGAT 60.820 60.000 0.00 0.00 0.00 1.98
253 254 1.542767 CGCGACCTCCTGACCTAGATA 60.543 57.143 0.00 0.00 0.00 1.98
254 255 1.881324 GCGACCTCCTGACCTAGATAC 59.119 57.143 0.00 0.00 0.00 2.24
255 256 2.487625 GCGACCTCCTGACCTAGATACT 60.488 54.545 0.00 0.00 0.00 2.12
256 257 3.404899 CGACCTCCTGACCTAGATACTC 58.595 54.545 0.00 0.00 0.00 2.59
257 258 3.071892 CGACCTCCTGACCTAGATACTCT 59.928 52.174 0.00 0.00 0.00 3.24
258 259 4.648651 GACCTCCTGACCTAGATACTCTC 58.351 52.174 0.00 0.00 0.00 3.20
259 260 4.048600 ACCTCCTGACCTAGATACTCTCA 58.951 47.826 0.00 0.00 0.00 3.27
260 261 4.667858 ACCTCCTGACCTAGATACTCTCAT 59.332 45.833 0.00 0.00 0.00 2.90
261 262 5.009631 CCTCCTGACCTAGATACTCTCATG 58.990 50.000 0.00 0.00 0.00 3.07
262 263 4.402829 TCCTGACCTAGATACTCTCATGC 58.597 47.826 0.00 0.00 0.00 4.06
263 264 4.141158 TCCTGACCTAGATACTCTCATGCA 60.141 45.833 0.00 0.00 0.00 3.96
264 265 4.586421 CCTGACCTAGATACTCTCATGCAA 59.414 45.833 0.00 0.00 0.00 4.08
265 266 5.508825 CCTGACCTAGATACTCTCATGCAAC 60.509 48.000 0.00 0.00 0.00 4.17
266 267 4.342378 TGACCTAGATACTCTCATGCAACC 59.658 45.833 0.00 0.00 0.00 3.77
267 268 4.290093 ACCTAGATACTCTCATGCAACCA 58.710 43.478 0.00 0.00 0.00 3.67
268 269 4.100189 ACCTAGATACTCTCATGCAACCAC 59.900 45.833 0.00 0.00 0.00 4.16
269 270 4.343526 CCTAGATACTCTCATGCAACCACT 59.656 45.833 0.00 0.00 0.00 4.00
270 271 5.536538 CCTAGATACTCTCATGCAACCACTA 59.463 44.000 0.00 0.00 0.00 2.74
271 272 5.269505 AGATACTCTCATGCAACCACTAC 57.730 43.478 0.00 0.00 0.00 2.73
272 273 2.370281 ACTCTCATGCAACCACTACG 57.630 50.000 0.00 0.00 0.00 3.51
273 274 1.002366 CTCTCATGCAACCACTACGC 58.998 55.000 0.00 0.00 0.00 4.42
274 275 0.391130 TCTCATGCAACCACTACGCC 60.391 55.000 0.00 0.00 0.00 5.68
275 276 0.673333 CTCATGCAACCACTACGCCA 60.673 55.000 0.00 0.00 0.00 5.69
276 277 0.953471 TCATGCAACCACTACGCCAC 60.953 55.000 0.00 0.00 0.00 5.01
277 278 0.955428 CATGCAACCACTACGCCACT 60.955 55.000 0.00 0.00 0.00 4.00
278 279 0.611200 ATGCAACCACTACGCCACTA 59.389 50.000 0.00 0.00 0.00 2.74
279 280 0.611200 TGCAACCACTACGCCACTAT 59.389 50.000 0.00 0.00 0.00 2.12
280 281 1.006832 GCAACCACTACGCCACTATG 58.993 55.000 0.00 0.00 0.00 2.23
281 282 1.006832 CAACCACTACGCCACTATGC 58.993 55.000 0.00 0.00 0.00 3.14
282 283 0.611200 AACCACTACGCCACTATGCA 59.389 50.000 0.00 0.00 0.00 3.96
283 284 0.175760 ACCACTACGCCACTATGCAG 59.824 55.000 0.00 0.00 0.00 4.41
284 285 0.459899 CCACTACGCCACTATGCAGA 59.540 55.000 0.00 0.00 0.00 4.26
285 286 1.536922 CCACTACGCCACTATGCAGAG 60.537 57.143 6.84 6.84 0.00 3.35
286 287 1.405463 CACTACGCCACTATGCAGAGA 59.595 52.381 16.75 0.00 0.00 3.10
287 288 2.035193 CACTACGCCACTATGCAGAGAT 59.965 50.000 16.75 0.00 0.00 2.75
288 289 2.294791 ACTACGCCACTATGCAGAGATC 59.705 50.000 16.75 2.42 0.00 2.75
289 290 1.407936 ACGCCACTATGCAGAGATCT 58.592 50.000 16.75 0.00 0.00 2.75
290 291 1.068281 ACGCCACTATGCAGAGATCTG 59.932 52.381 16.75 2.67 46.40 2.90
291 292 1.604947 CGCCACTATGCAGAGATCTGG 60.605 57.143 16.75 13.49 43.94 3.86
292 293 1.877258 GCCACTATGCAGAGATCTGGC 60.877 57.143 21.29 21.29 43.94 4.85
293 294 1.415289 CCACTATGCAGAGATCTGGCA 59.585 52.381 16.75 18.07 43.94 4.92
294 295 2.158856 CCACTATGCAGAGATCTGGCAA 60.159 50.000 16.75 10.14 43.94 4.52
295 296 3.538591 CACTATGCAGAGATCTGGCAAA 58.461 45.455 16.75 1.54 43.94 3.68
296 297 3.311871 CACTATGCAGAGATCTGGCAAAC 59.688 47.826 16.75 0.00 43.94 2.93
297 298 1.760192 ATGCAGAGATCTGGCAAACC 58.240 50.000 19.27 0.00 43.94 3.27
298 299 0.694771 TGCAGAGATCTGGCAAACCT 59.305 50.000 14.53 0.00 43.94 3.50
299 300 1.093159 GCAGAGATCTGGCAAACCTG 58.907 55.000 11.63 0.00 43.94 4.00
300 301 1.339438 GCAGAGATCTGGCAAACCTGA 60.339 52.381 11.63 0.00 46.68 3.86
301 302 2.630158 CAGAGATCTGGCAAACCTGAG 58.370 52.381 0.00 0.00 45.94 3.35
303 304 3.566130 GATCTGGCAAACCTGAGCT 57.434 52.632 0.00 0.00 45.94 4.09
304 305 1.831580 GATCTGGCAAACCTGAGCTT 58.168 50.000 0.00 0.00 45.94 3.74
305 306 2.165998 GATCTGGCAAACCTGAGCTTT 58.834 47.619 0.00 0.00 45.94 3.51
306 307 1.609208 TCTGGCAAACCTGAGCTTTC 58.391 50.000 0.00 0.00 38.86 2.62
307 308 1.143684 TCTGGCAAACCTGAGCTTTCT 59.856 47.619 0.00 0.00 38.86 2.52
308 309 1.538950 CTGGCAAACCTGAGCTTTCTC 59.461 52.381 0.00 0.00 37.06 2.87
309 310 0.884514 GGCAAACCTGAGCTTTCTCC 59.115 55.000 0.00 0.00 38.58 3.71
310 311 1.546548 GGCAAACCTGAGCTTTCTCCT 60.547 52.381 0.00 0.00 38.58 3.69
311 312 2.234143 GCAAACCTGAGCTTTCTCCTT 58.766 47.619 0.00 0.00 38.58 3.36
312 313 2.227626 GCAAACCTGAGCTTTCTCCTTC 59.772 50.000 0.00 0.00 38.58 3.46
313 314 3.749226 CAAACCTGAGCTTTCTCCTTCT 58.251 45.455 0.00 0.00 38.58 2.85
314 315 4.140536 CAAACCTGAGCTTTCTCCTTCTT 58.859 43.478 0.00 0.00 38.58 2.52
315 316 4.445557 AACCTGAGCTTTCTCCTTCTTT 57.554 40.909 0.00 0.00 38.58 2.52
316 317 4.445557 ACCTGAGCTTTCTCCTTCTTTT 57.554 40.909 0.00 0.00 38.58 2.27
317 318 5.568620 ACCTGAGCTTTCTCCTTCTTTTA 57.431 39.130 0.00 0.00 38.58 1.52
318 319 6.133253 ACCTGAGCTTTCTCCTTCTTTTAT 57.867 37.500 0.00 0.00 38.58 1.40
319 320 6.547402 ACCTGAGCTTTCTCCTTCTTTTATT 58.453 36.000 0.00 0.00 38.58 1.40
320 321 6.657117 ACCTGAGCTTTCTCCTTCTTTTATTC 59.343 38.462 0.00 0.00 38.58 1.75
321 322 6.883756 CCTGAGCTTTCTCCTTCTTTTATTCT 59.116 38.462 0.00 0.00 38.58 2.40
322 323 7.392953 CCTGAGCTTTCTCCTTCTTTTATTCTT 59.607 37.037 0.00 0.00 38.58 2.52
323 324 8.697507 TGAGCTTTCTCCTTCTTTTATTCTTT 57.302 30.769 0.00 0.00 38.58 2.52
324 325 8.787852 TGAGCTTTCTCCTTCTTTTATTCTTTC 58.212 33.333 0.00 0.00 38.58 2.62
325 326 8.932434 AGCTTTCTCCTTCTTTTATTCTTTCT 57.068 30.769 0.00 0.00 0.00 2.52
326 327 9.360901 AGCTTTCTCCTTCTTTTATTCTTTCTT 57.639 29.630 0.00 0.00 0.00 2.52
327 328 9.973450 GCTTTCTCCTTCTTTTATTCTTTCTTT 57.027 29.630 0.00 0.00 0.00 2.52
329 330 9.750125 TTTCTCCTTCTTTTATTCTTTCTTTGC 57.250 29.630 0.00 0.00 0.00 3.68
330 331 7.886338 TCTCCTTCTTTTATTCTTTCTTTGCC 58.114 34.615 0.00 0.00 0.00 4.52
331 332 7.725844 TCTCCTTCTTTTATTCTTTCTTTGCCT 59.274 33.333 0.00 0.00 0.00 4.75
332 333 8.250143 TCCTTCTTTTATTCTTTCTTTGCCTT 57.750 30.769 0.00 0.00 0.00 4.35
333 334 8.704668 TCCTTCTTTTATTCTTTCTTTGCCTTT 58.295 29.630 0.00 0.00 0.00 3.11
334 335 9.330063 CCTTCTTTTATTCTTTCTTTGCCTTTT 57.670 29.630 0.00 0.00 0.00 2.27
365 366 7.463469 TTCTTTCTTTCATTTTCCTTTTCGC 57.537 32.000 0.00 0.00 0.00 4.70
366 367 6.805713 TCTTTCTTTCATTTTCCTTTTCGCT 58.194 32.000 0.00 0.00 0.00 4.93
367 368 7.264947 TCTTTCTTTCATTTTCCTTTTCGCTT 58.735 30.769 0.00 0.00 0.00 4.68
368 369 7.763985 TCTTTCTTTCATTTTCCTTTTCGCTTT 59.236 29.630 0.00 0.00 0.00 3.51
369 370 7.841915 TTCTTTCATTTTCCTTTTCGCTTTT 57.158 28.000 0.00 0.00 0.00 2.27
370 371 7.841915 TCTTTCATTTTCCTTTTCGCTTTTT 57.158 28.000 0.00 0.00 0.00 1.94
409 410 5.782893 TTTTTCATCCTGGTTCGTTGATT 57.217 34.783 0.00 0.00 0.00 2.57
410 411 5.782893 TTTTCATCCTGGTTCGTTGATTT 57.217 34.783 0.00 0.00 0.00 2.17
411 412 5.782893 TTTCATCCTGGTTCGTTGATTTT 57.217 34.783 0.00 0.00 0.00 1.82
412 413 4.764679 TCATCCTGGTTCGTTGATTTTG 57.235 40.909 0.00 0.00 0.00 2.44
413 414 4.141287 TCATCCTGGTTCGTTGATTTTGT 58.859 39.130 0.00 0.00 0.00 2.83
414 415 4.582656 TCATCCTGGTTCGTTGATTTTGTT 59.417 37.500 0.00 0.00 0.00 2.83
415 416 4.993029 TCCTGGTTCGTTGATTTTGTTT 57.007 36.364 0.00 0.00 0.00 2.83
416 417 4.677584 TCCTGGTTCGTTGATTTTGTTTG 58.322 39.130 0.00 0.00 0.00 2.93
417 418 3.245048 CCTGGTTCGTTGATTTTGTTTGC 59.755 43.478 0.00 0.00 0.00 3.68
418 419 3.849911 TGGTTCGTTGATTTTGTTTGCA 58.150 36.364 0.00 0.00 0.00 4.08
419 420 4.245660 TGGTTCGTTGATTTTGTTTGCAA 58.754 34.783 0.00 0.00 0.00 4.08
420 421 4.690748 TGGTTCGTTGATTTTGTTTGCAAA 59.309 33.333 8.05 8.05 42.25 3.68
421 422 5.352569 TGGTTCGTTGATTTTGTTTGCAAAT 59.647 32.000 16.21 0.00 43.26 2.32
422 423 6.535150 TGGTTCGTTGATTTTGTTTGCAAATA 59.465 30.769 16.21 10.22 43.26 1.40
423 424 6.843779 GGTTCGTTGATTTTGTTTGCAAATAC 59.156 34.615 16.21 4.58 43.26 1.89
424 425 6.191534 TCGTTGATTTTGTTTGCAAATACG 57.808 33.333 16.21 10.40 43.26 3.06
425 426 5.744345 TCGTTGATTTTGTTTGCAAATACGT 59.256 32.000 16.21 0.94 43.26 3.57
426 427 6.055805 CGTTGATTTTGTTTGCAAATACGTC 58.944 36.000 16.21 10.55 43.26 4.34
427 428 6.291322 CGTTGATTTTGTTTGCAAATACGTCA 60.291 34.615 16.21 12.82 43.26 4.35
428 429 7.394872 GTTGATTTTGTTTGCAAATACGTCAA 58.605 30.769 16.21 17.27 43.26 3.18
429 430 6.927746 TGATTTTGTTTGCAAATACGTCAAC 58.072 32.000 16.21 0.53 43.26 3.18
430 431 6.754209 TGATTTTGTTTGCAAATACGTCAACT 59.246 30.769 16.21 4.61 43.26 3.16
431 432 6.952935 TTTTGTTTGCAAATACGTCAACTT 57.047 29.167 16.21 0.00 43.26 2.66
432 433 6.952935 TTTGTTTGCAAATACGTCAACTTT 57.047 29.167 16.21 0.00 39.43 2.66
433 434 6.952935 TTGTTTGCAAATACGTCAACTTTT 57.047 29.167 16.21 0.00 0.00 2.27
434 435 6.561945 TGTTTGCAAATACGTCAACTTTTC 57.438 33.333 16.21 0.00 0.00 2.29
435 436 6.326375 TGTTTGCAAATACGTCAACTTTTCT 58.674 32.000 16.21 0.00 0.00 2.52
436 437 6.809196 TGTTTGCAAATACGTCAACTTTTCTT 59.191 30.769 16.21 0.00 0.00 2.52
437 438 7.329717 TGTTTGCAAATACGTCAACTTTTCTTT 59.670 29.630 16.21 0.00 0.00 2.52
438 439 7.820044 TTGCAAATACGTCAACTTTTCTTTT 57.180 28.000 0.00 0.00 0.00 2.27
439 440 8.912787 TTGCAAATACGTCAACTTTTCTTTTA 57.087 26.923 0.00 0.00 0.00 1.52
440 441 8.912787 TGCAAATACGTCAACTTTTCTTTTAA 57.087 26.923 0.00 0.00 0.00 1.52
441 442 9.522804 TGCAAATACGTCAACTTTTCTTTTAAT 57.477 25.926 0.00 0.00 0.00 1.40
447 448 8.488979 ACGTCAACTTTTCTTTTAATTCGATG 57.511 30.769 0.00 0.00 0.00 3.84
448 449 8.339714 ACGTCAACTTTTCTTTTAATTCGATGA 58.660 29.630 0.00 0.00 0.00 2.92
449 450 9.165014 CGTCAACTTTTCTTTTAATTCGATGAA 57.835 29.630 0.00 0.00 0.00 2.57
533 534 5.782893 TTTTCCAAATCGGTGATCTTTGT 57.217 34.783 0.00 0.00 35.57 2.83
534 535 5.371115 TTTCCAAATCGGTGATCTTTGTC 57.629 39.130 0.00 0.00 35.57 3.18
535 536 3.000041 TCCAAATCGGTGATCTTTGTCG 59.000 45.455 0.00 0.00 35.57 4.35
536 537 3.000041 CCAAATCGGTGATCTTTGTCGA 59.000 45.455 0.00 0.00 0.00 4.20
537 538 3.435327 CCAAATCGGTGATCTTTGTCGAA 59.565 43.478 0.00 0.00 33.53 3.71
538 539 4.083537 CCAAATCGGTGATCTTTGTCGAAA 60.084 41.667 0.00 0.00 33.53 3.46
539 540 5.448438 CAAATCGGTGATCTTTGTCGAAAA 58.552 37.500 0.00 0.00 33.53 2.29
540 541 5.880054 AATCGGTGATCTTTGTCGAAAAT 57.120 34.783 0.00 0.00 33.53 1.82
541 542 4.921470 TCGGTGATCTTTGTCGAAAATC 57.079 40.909 0.00 0.00 0.00 2.17
542 543 3.366724 TCGGTGATCTTTGTCGAAAATCG 59.633 43.478 0.00 0.00 42.10 3.34
625 626 9.610705 TTCAATGAACCTTTTCAAATTCAATGA 57.389 25.926 0.00 0.45 45.01 2.57
626 627 9.610705 TCAATGAACCTTTTCAAATTCAATGAA 57.389 25.926 0.00 0.00 45.01 2.57
627 628 9.654417 CAATGAACCTTTTCAAATTCAATGAAC 57.346 29.630 0.00 0.00 45.01 3.18
628 629 9.617523 AATGAACCTTTTCAAATTCAATGAACT 57.382 25.926 0.00 0.00 45.01 3.01
629 630 9.617523 ATGAACCTTTTCAAATTCAATGAACTT 57.382 25.926 0.00 0.00 45.01 2.66
630 631 9.447157 TGAACCTTTTCAAATTCAATGAACTTT 57.553 25.926 0.00 0.00 38.87 2.66
649 650 9.874205 TGAACTTTTTCTCAAATTTGATGAACT 57.126 25.926 20.76 8.63 36.46 3.01
657 658 8.673626 TCTCAAATTTGATGAACTTATTTCGC 57.326 30.769 20.76 0.00 36.46 4.70
658 659 8.296000 TCTCAAATTTGATGAACTTATTTCGCA 58.704 29.630 20.76 0.00 36.46 5.10
659 660 8.984891 TCAAATTTGATGAACTTATTTCGCAT 57.015 26.923 16.91 0.00 32.50 4.73
660 661 9.421806 TCAAATTTGATGAACTTATTTCGCATT 57.578 25.926 16.91 0.00 32.50 3.56
663 664 8.984891 ATTTGATGAACTTATTTCGCATTTGA 57.015 26.923 0.00 0.00 36.97 2.69
664 665 8.984891 TTTGATGAACTTATTTCGCATTTGAT 57.015 26.923 0.00 0.00 36.97 2.57
665 666 7.974243 TGATGAACTTATTTCGCATTTGATG 57.026 32.000 0.00 0.00 36.97 3.07
666 667 7.760437 TGATGAACTTATTTCGCATTTGATGA 58.240 30.769 0.00 0.00 36.97 2.92
667 668 8.242739 TGATGAACTTATTTCGCATTTGATGAA 58.757 29.630 0.00 0.00 36.97 2.57
668 669 7.795431 TGAACTTATTTCGCATTTGATGAAC 57.205 32.000 0.00 0.00 36.97 3.18
669 670 7.592938 TGAACTTATTTCGCATTTGATGAACT 58.407 30.769 0.00 0.00 36.97 3.01
670 671 8.081633 TGAACTTATTTCGCATTTGATGAACTT 58.918 29.630 0.00 0.00 36.97 2.66
671 672 9.554724 GAACTTATTTCGCATTTGATGAACTTA 57.445 29.630 0.00 0.00 0.00 2.24
676 677 7.491254 TTTCGCATTTGATGAACTTATTTCG 57.509 32.000 0.00 0.00 36.97 3.46
677 678 5.027737 TCGCATTTGATGAACTTATTTCGC 58.972 37.500 0.00 0.00 36.97 4.70
678 679 4.792702 CGCATTTGATGAACTTATTTCGCA 59.207 37.500 0.00 0.00 36.97 5.10
679 680 5.456497 CGCATTTGATGAACTTATTTCGCAT 59.544 36.000 0.00 0.00 36.97 4.73
680 681 6.020440 CGCATTTGATGAACTTATTTCGCATT 60.020 34.615 0.00 0.00 36.97 3.56
681 682 7.463119 CGCATTTGATGAACTTATTTCGCATTT 60.463 33.333 0.00 0.00 36.97 2.32
682 683 7.633281 GCATTTGATGAACTTATTTCGCATTTG 59.367 33.333 0.00 0.00 36.97 2.32
683 684 8.862074 CATTTGATGAACTTATTTCGCATTTGA 58.138 29.630 0.00 0.00 36.97 2.69
684 685 8.984891 TTTGATGAACTTATTTCGCATTTGAT 57.015 26.923 0.00 0.00 36.97 2.57
685 686 7.974243 TGATGAACTTATTTCGCATTTGATG 57.026 32.000 0.00 0.00 36.97 3.07
686 687 7.760437 TGATGAACTTATTTCGCATTTGATGA 58.240 30.769 0.00 0.00 36.97 2.92
687 688 8.242739 TGATGAACTTATTTCGCATTTGATGAA 58.757 29.630 0.00 0.00 36.97 2.57
688 689 7.795431 TGAACTTATTTCGCATTTGATGAAC 57.205 32.000 0.00 0.00 36.97 3.18
689 690 7.592938 TGAACTTATTTCGCATTTGATGAACT 58.407 30.769 0.00 0.00 36.97 3.01
690 691 7.750458 TGAACTTATTTCGCATTTGATGAACTC 59.250 33.333 0.00 0.00 36.97 3.01
691 692 7.383102 ACTTATTTCGCATTTGATGAACTCT 57.617 32.000 0.00 0.00 0.00 3.24
692 693 7.820648 ACTTATTTCGCATTTGATGAACTCTT 58.179 30.769 0.00 0.00 0.00 2.85
693 694 8.299570 ACTTATTTCGCATTTGATGAACTCTTT 58.700 29.630 0.00 0.00 0.00 2.52
694 695 9.773328 CTTATTTCGCATTTGATGAACTCTTTA 57.227 29.630 0.00 0.00 0.00 1.85
697 698 9.643693 ATTTCGCATTTGATGAACTCTTTATTT 57.356 25.926 0.00 0.00 0.00 1.40
698 699 8.673626 TTCGCATTTGATGAACTCTTTATTTC 57.326 30.769 0.00 0.00 0.00 2.17
699 700 7.815641 TCGCATTTGATGAACTCTTTATTTCA 58.184 30.769 0.00 0.00 36.21 2.69
700 701 8.296000 TCGCATTTGATGAACTCTTTATTTCAA 58.704 29.630 0.00 0.00 35.42 2.69
701 702 8.914654 CGCATTTGATGAACTCTTTATTTCAAA 58.085 29.630 0.00 0.00 35.42 2.69
713 714 9.981114 ACTCTTTATTTCAAATTTGGTTAGGTG 57.019 29.630 17.90 5.10 0.00 4.00
714 715 9.981114 CTCTTTATTTCAAATTTGGTTAGGTGT 57.019 29.630 17.90 0.00 0.00 4.16
720 721 7.851387 TTCAAATTTGGTTAGGTGTTTTTCC 57.149 32.000 17.90 0.00 0.00 3.13
721 722 6.947464 TCAAATTTGGTTAGGTGTTTTTCCA 58.053 32.000 17.90 0.00 0.00 3.53
722 723 7.394816 TCAAATTTGGTTAGGTGTTTTTCCAA 58.605 30.769 17.90 0.00 33.90 3.53
723 724 7.883311 TCAAATTTGGTTAGGTGTTTTTCCAAA 59.117 29.630 17.90 9.11 44.92 3.28
724 725 8.515414 CAAATTTGGTTAGGTGTTTTTCCAAAA 58.485 29.630 10.49 0.00 44.33 2.44
725 726 8.815565 AATTTGGTTAGGTGTTTTTCCAAAAT 57.184 26.923 10.43 1.17 44.33 1.82
726 727 7.851387 TTTGGTTAGGTGTTTTTCCAAAATC 57.149 32.000 0.00 0.00 40.43 2.17
727 728 5.593010 TGGTTAGGTGTTTTTCCAAAATCG 58.407 37.500 0.00 0.00 0.00 3.34
728 729 5.360144 TGGTTAGGTGTTTTTCCAAAATCGA 59.640 36.000 0.00 0.00 0.00 3.59
729 730 6.041069 TGGTTAGGTGTTTTTCCAAAATCGAT 59.959 34.615 0.00 0.00 0.00 3.59
730 731 6.926826 GGTTAGGTGTTTTTCCAAAATCGATT 59.073 34.615 4.39 4.39 0.00 3.34
731 732 8.083462 GGTTAGGTGTTTTTCCAAAATCGATTA 58.917 33.333 11.83 0.00 0.00 1.75
732 733 9.465985 GTTAGGTGTTTTTCCAAAATCGATTAA 57.534 29.630 11.83 0.00 0.00 1.40
733 734 7.940178 AGGTGTTTTTCCAAAATCGATTAAC 57.060 32.000 11.83 10.50 0.00 2.01
734 735 7.722363 AGGTGTTTTTCCAAAATCGATTAACT 58.278 30.769 11.83 0.00 0.00 2.24
735 736 8.201464 AGGTGTTTTTCCAAAATCGATTAACTT 58.799 29.630 11.83 0.00 0.00 2.66
736 737 8.484799 GGTGTTTTTCCAAAATCGATTAACTTC 58.515 33.333 11.83 7.67 0.00 3.01
737 738 9.244799 GTGTTTTTCCAAAATCGATTAACTTCT 57.755 29.630 11.83 0.00 0.00 2.85
738 739 9.243637 TGTTTTTCCAAAATCGATTAACTTCTG 57.756 29.630 11.83 2.73 0.00 3.02
739 740 9.244799 GTTTTTCCAAAATCGATTAACTTCTGT 57.755 29.630 11.83 0.00 0.00 3.41
740 741 9.458374 TTTTTCCAAAATCGATTAACTTCTGTC 57.542 29.630 11.83 0.00 0.00 3.51
741 742 7.737972 TTCCAAAATCGATTAACTTCTGTCA 57.262 32.000 11.83 0.00 0.00 3.58
742 743 7.921786 TCCAAAATCGATTAACTTCTGTCAT 57.078 32.000 11.83 0.00 0.00 3.06
743 744 9.443323 TTCCAAAATCGATTAACTTCTGTCATA 57.557 29.630 11.83 0.00 0.00 2.15
744 745 9.613428 TCCAAAATCGATTAACTTCTGTCATAT 57.387 29.630 11.83 0.00 0.00 1.78
751 752 9.430623 TCGATTAACTTCTGTCATATTTTGTGA 57.569 29.630 0.00 0.00 0.00 3.58
858 859 8.702163 AAATTGAACTTTTATCCTTAATGGCG 57.298 30.769 0.00 0.00 35.26 5.69
859 860 7.639113 ATTGAACTTTTATCCTTAATGGCGA 57.361 32.000 0.00 0.00 35.26 5.54
860 861 7.455641 TTGAACTTTTATCCTTAATGGCGAA 57.544 32.000 0.00 0.00 35.26 4.70
861 862 6.848451 TGAACTTTTATCCTTAATGGCGAAC 58.152 36.000 0.00 0.00 35.26 3.95
862 863 6.657541 TGAACTTTTATCCTTAATGGCGAACT 59.342 34.615 0.00 0.00 35.26 3.01
863 864 7.175990 TGAACTTTTATCCTTAATGGCGAACTT 59.824 33.333 0.00 0.00 35.26 2.66
864 865 7.462571 ACTTTTATCCTTAATGGCGAACTTT 57.537 32.000 0.00 0.00 35.26 2.66
865 866 7.892609 ACTTTTATCCTTAATGGCGAACTTTT 58.107 30.769 0.00 0.00 35.26 2.27
866 867 8.364894 ACTTTTATCCTTAATGGCGAACTTTTT 58.635 29.630 0.00 0.00 35.26 1.94
897 898 9.889128 ACAAATCTTTGATTTTCTTTTGGAAGA 57.111 25.926 9.53 0.00 40.55 2.87
899 900 9.551734 AAATCTTTGATTTTCTTTTGGAAGAGG 57.448 29.630 0.25 0.00 42.55 3.69
900 901 7.660030 TCTTTGATTTTCTTTTGGAAGAGGT 57.340 32.000 0.00 0.00 42.55 3.85
901 902 8.078060 TCTTTGATTTTCTTTTGGAAGAGGTT 57.922 30.769 0.00 0.00 42.55 3.50
902 903 7.981225 TCTTTGATTTTCTTTTGGAAGAGGTTG 59.019 33.333 0.00 0.00 42.55 3.77
903 904 6.790232 TGATTTTCTTTTGGAAGAGGTTGT 57.210 33.333 0.00 0.00 42.55 3.32
904 905 7.181569 TGATTTTCTTTTGGAAGAGGTTGTT 57.818 32.000 0.00 0.00 42.55 2.83
905 906 7.041107 TGATTTTCTTTTGGAAGAGGTTGTTG 58.959 34.615 0.00 0.00 42.55 3.33
906 907 5.337578 TTTCTTTTGGAAGAGGTTGTTGG 57.662 39.130 0.00 0.00 42.55 3.77
907 908 3.295973 TCTTTTGGAAGAGGTTGTTGGG 58.704 45.455 0.00 0.00 36.99 4.12
908 909 1.408969 TTTGGAAGAGGTTGTTGGGC 58.591 50.000 0.00 0.00 0.00 5.36
909 910 0.469144 TTGGAAGAGGTTGTTGGGCC 60.469 55.000 0.00 0.00 0.00 5.80
910 911 1.971695 GGAAGAGGTTGTTGGGCCG 60.972 63.158 0.00 0.00 0.00 6.13
911 912 1.971695 GAAGAGGTTGTTGGGCCGG 60.972 63.158 0.00 0.00 0.00 6.13
912 913 4.660938 AGAGGTTGTTGGGCCGGC 62.661 66.667 21.18 21.18 0.00 6.13
932 933 4.373116 GCAAGGAGACCCGCGTGA 62.373 66.667 4.92 0.00 37.58 4.35
933 934 2.125912 CAAGGAGACCCGCGTGAG 60.126 66.667 4.92 0.00 37.58 3.51
952 953 2.512515 GCCAGGAGCGCTAAGTGG 60.513 66.667 22.16 22.16 0.00 4.00
953 954 2.512515 CCAGGAGCGCTAAGTGGC 60.513 66.667 11.50 0.00 0.00 5.01
961 962 3.490890 GCTAAGTGGCGCAGAAGG 58.509 61.111 10.83 0.00 0.00 3.46
962 963 2.754995 GCTAAGTGGCGCAGAAGGC 61.755 63.158 10.83 1.88 39.90 4.35
971 972 2.176792 GCAGAAGGCGCCGAAAAG 59.823 61.111 23.20 12.61 0.00 2.27
972 973 2.870372 CAGAAGGCGCCGAAAAGG 59.130 61.111 23.20 6.11 44.97 3.11
973 974 1.671054 CAGAAGGCGCCGAAAAGGA 60.671 57.895 23.20 0.00 45.00 3.36
974 975 1.376037 AGAAGGCGCCGAAAAGGAG 60.376 57.895 23.20 0.00 45.00 3.69
979 980 2.820037 CGCCGAAAAGGAGCTCCC 60.820 66.667 29.54 12.87 45.00 4.30
980 981 2.438614 GCCGAAAAGGAGCTCCCC 60.439 66.667 29.54 14.65 45.00 4.81
981 982 2.272471 CCGAAAAGGAGCTCCCCC 59.728 66.667 29.54 14.30 45.00 5.40
1599 1615 1.681538 TCGCCTCTGTCTACTCATCC 58.318 55.000 0.00 0.00 0.00 3.51
1677 1696 4.575885 TGAAGCAACCCAGTACACTTATC 58.424 43.478 0.00 0.00 0.00 1.75
1800 1822 4.450053 GTCTGGTGTACTATAGTCCTCGT 58.550 47.826 9.12 0.00 0.00 4.18
1879 1901 4.390297 GCTATAGATTCGAAATGTGGGAGC 59.610 45.833 0.00 2.12 0.00 4.70
2071 2104 3.062763 CGACTTGAGTCAATGCAGTTCT 58.937 45.455 5.91 0.00 44.99 3.01
2155 2188 5.304614 ACTGCAGGTAGTTCTCTGTCTTTAA 59.695 40.000 19.93 0.00 33.81 1.52
2243 2282 6.700081 TGTGATAGTACTGAAGTGTTTGTGTC 59.300 38.462 5.39 0.00 0.00 3.67
2253 2292 5.182190 TGAAGTGTTTGTGTCACTGCTTAAA 59.818 36.000 4.27 0.00 44.03 1.52
2415 2703 7.959651 CACTGTTTAGTCATTGTGCTTTCTATC 59.040 37.037 0.00 0.00 34.07 2.08
2581 2873 5.760743 GGCTGAGGATTATAAGTTCTTGGTC 59.239 44.000 0.00 0.00 0.00 4.02
2844 3138 6.667414 AGACTATGAGGTCTGAGTTCATCTTT 59.333 38.462 7.00 0.00 43.89 2.52
2961 3262 2.336809 GCGGTATGCGAGAGGAGG 59.663 66.667 0.00 0.00 32.19 4.30
2962 3263 2.194212 GCGGTATGCGAGAGGAGGA 61.194 63.158 0.00 0.00 32.19 3.71
2971 3272 1.649390 CGAGAGGAGGACTGGTGACG 61.649 65.000 0.00 0.00 0.00 4.35
3026 3327 1.153086 CATGGGGTGTAGGAGCAGC 60.153 63.158 0.00 0.00 36.26 5.25
3169 3472 6.322969 TCGATTAGTAGCTGAATTCTGGGTTA 59.677 38.462 13.50 1.45 0.00 2.85
3172 3475 7.966339 TTAGTAGCTGAATTCTGGGTTACTA 57.034 36.000 13.50 15.75 30.70 1.82
3184 5170 5.925509 TCTGGGTTACTATTAGCAATGTCC 58.074 41.667 0.00 0.00 0.00 4.02
3190 5176 9.000486 GGGTTACTATTAGCAATGTCCTTAATC 58.000 37.037 0.00 0.00 0.00 1.75
3214 5200 6.016527 TCTGAAATATGATTTCATCTGCTGCC 60.017 38.462 13.48 0.00 37.72 4.85
3232 5218 4.683400 GCTGCCCTGCTAGTTAGTGATTTA 60.683 45.833 0.00 0.00 0.00 1.40
3310 5300 3.010624 TCGTGTGTGCCAATTTCATTG 57.989 42.857 0.00 0.00 39.94 2.82
3337 5327 1.890174 CCAAGCGGGGATTTGGAAC 59.110 57.895 0.00 0.00 45.32 3.62
3339 5329 0.958382 CAAGCGGGGATTTGGAACGA 60.958 55.000 0.00 0.00 0.00 3.85
3340 5330 0.676782 AAGCGGGGATTTGGAACGAG 60.677 55.000 0.00 0.00 0.00 4.18
3356 5346 3.713826 ACGAGTGGATATTGTGGGTTT 57.286 42.857 0.00 0.00 0.00 3.27
3369 5359 0.467290 TGGGTTTGTCTGACTTGGGC 60.467 55.000 9.51 0.00 0.00 5.36
3392 5382 5.704978 GCCTTGACTCTTTCATTCTCTTCTT 59.295 40.000 0.00 0.00 32.84 2.52
3426 5416 0.380378 TTCGGCAAGTCAAAGCACAC 59.620 50.000 0.00 0.00 0.00 3.82
3448 5438 3.626670 CAGATCAAGGAAAGGATGCAGAC 59.373 47.826 0.00 0.00 0.00 3.51
3466 5456 2.436646 CTTGTGCCTAGCCGGGTG 60.437 66.667 18.40 6.25 0.00 4.61
3508 5498 5.185056 TGACGTGATATTCAAGAAGGAGACA 59.815 40.000 0.00 0.00 30.40 3.41
3520 5510 4.023291 AGAAGGAGACAGAGACAAGATCC 58.977 47.826 0.00 0.00 0.00 3.36
3829 5822 3.249752 TGTAAGTTGGGTGTAGGGCTAA 58.750 45.455 0.00 0.00 0.00 3.09
3895 5889 0.459237 CCTCACGAAGATGCGAGCTT 60.459 55.000 0.00 0.00 34.83 3.74
4002 6009 6.212388 CCTCTAAAGGATGCAGTATAGGATGT 59.788 42.308 0.00 0.00 46.67 3.06
4089 6096 7.122650 ACAGCTAGTAATGCAACATGGTTTATT 59.877 33.333 0.00 0.00 0.00 1.40
4168 6177 1.074566 AGCTTCTTCCTGTTCCCCAAG 59.925 52.381 0.00 0.00 0.00 3.61
4209 6220 3.524095 TTCTGTGACCAACCCAATGAT 57.476 42.857 0.00 0.00 0.00 2.45
4293 6304 1.002366 AAGATCGTTCATGCGACAGC 58.998 50.000 0.00 0.00 43.99 4.40
4354 6365 5.107143 GCTTGAGCTTTTCTGTGAAGAGTAG 60.107 44.000 0.00 0.00 38.21 2.57
4467 6483 1.291877 ACCTTTGCTTGCGCTACTCG 61.292 55.000 9.73 0.00 42.12 4.18
4474 6490 3.982372 TTGCGCTACTCGGCCTTCG 62.982 63.158 9.73 0.00 38.94 3.79
4487 6507 0.598065 GCCTTCGCTTCCAACATTGT 59.402 50.000 0.00 0.00 0.00 2.71
4489 6509 1.608590 CCTTCGCTTCCAACATTGTGT 59.391 47.619 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.149647 AGTGCTTTGATGAATTGGTTAAATCAA 58.850 29.630 0.00 0.00 35.91 2.57
1 2 7.599621 CAGTGCTTTGATGAATTGGTTAAATCA 59.400 33.333 0.00 0.00 0.00 2.57
2 3 7.814107 TCAGTGCTTTGATGAATTGGTTAAATC 59.186 33.333 0.00 0.00 0.00 2.17
3 4 7.669427 TCAGTGCTTTGATGAATTGGTTAAAT 58.331 30.769 0.00 0.00 0.00 1.40
4 5 7.048629 TCAGTGCTTTGATGAATTGGTTAAA 57.951 32.000 0.00 0.00 0.00 1.52
5 6 6.647334 TCAGTGCTTTGATGAATTGGTTAA 57.353 33.333 0.00 0.00 0.00 2.01
6 7 6.647334 TTCAGTGCTTTGATGAATTGGTTA 57.353 33.333 0.00 0.00 0.00 2.85
7 8 5.534207 TTCAGTGCTTTGATGAATTGGTT 57.466 34.783 0.00 0.00 0.00 3.67
9 10 8.030692 TCTAATTTCAGTGCTTTGATGAATTGG 58.969 33.333 9.20 7.47 33.26 3.16
11 12 8.579006 TGTCTAATTTCAGTGCTTTGATGAATT 58.421 29.630 0.00 0.00 33.26 2.17
13 14 7.509141 TGTCTAATTTCAGTGCTTTGATGAA 57.491 32.000 0.00 0.00 0.00 2.57
17 18 6.936335 TGAGATGTCTAATTTCAGTGCTTTGA 59.064 34.615 0.00 0.00 0.00 2.69
18 19 7.137490 TGAGATGTCTAATTTCAGTGCTTTG 57.863 36.000 0.00 0.00 0.00 2.77
19 20 7.148120 CCATGAGATGTCTAATTTCAGTGCTTT 60.148 37.037 0.00 0.00 0.00 3.51
20 21 6.318144 CCATGAGATGTCTAATTTCAGTGCTT 59.682 38.462 0.00 0.00 0.00 3.91
21 22 5.821470 CCATGAGATGTCTAATTTCAGTGCT 59.179 40.000 0.00 0.00 0.00 4.40
22 23 5.008415 CCCATGAGATGTCTAATTTCAGTGC 59.992 44.000 0.00 0.00 0.00 4.40
23 24 5.008415 GCCCATGAGATGTCTAATTTCAGTG 59.992 44.000 0.00 0.00 0.00 3.66
24 25 5.128919 GCCCATGAGATGTCTAATTTCAGT 58.871 41.667 0.00 0.00 0.00 3.41
25 26 4.518211 GGCCCATGAGATGTCTAATTTCAG 59.482 45.833 0.00 0.00 0.00 3.02
26 27 4.464008 GGCCCATGAGATGTCTAATTTCA 58.536 43.478 0.00 0.00 0.00 2.69
27 28 3.499918 CGGCCCATGAGATGTCTAATTTC 59.500 47.826 0.00 0.00 0.00 2.17
28 29 3.480470 CGGCCCATGAGATGTCTAATTT 58.520 45.455 0.00 0.00 0.00 1.82
29 30 2.224621 CCGGCCCATGAGATGTCTAATT 60.225 50.000 0.00 0.00 0.00 1.40
30 31 1.349026 CCGGCCCATGAGATGTCTAAT 59.651 52.381 0.00 0.00 0.00 1.73
31 32 0.758734 CCGGCCCATGAGATGTCTAA 59.241 55.000 0.00 0.00 0.00 2.10
32 33 1.758440 GCCGGCCCATGAGATGTCTA 61.758 60.000 18.11 0.00 0.00 2.59
33 34 3.112205 GCCGGCCCATGAGATGTCT 62.112 63.158 18.11 0.00 0.00 3.41
34 35 2.592861 GCCGGCCCATGAGATGTC 60.593 66.667 18.11 0.00 0.00 3.06
35 36 4.195334 GGCCGGCCCATGAGATGT 62.195 66.667 36.64 0.00 0.00 3.06
36 37 4.193893 TGGCCGGCCCATGAGATG 62.194 66.667 41.75 0.00 39.18 2.90
37 38 3.882326 CTGGCCGGCCCATGAGAT 61.882 66.667 41.75 0.00 44.33 2.75
50 51 2.521708 ACTGTTTGTGGCCCTGGC 60.522 61.111 0.00 0.00 41.06 4.85
51 52 2.260869 CGACTGTTTGTGGCCCTGG 61.261 63.158 0.00 0.00 0.00 4.45
52 53 1.227823 TCGACTGTTTGTGGCCCTG 60.228 57.895 0.00 0.00 0.00 4.45
53 54 1.227853 GTCGACTGTTTGTGGCCCT 60.228 57.895 8.70 0.00 0.00 5.19
54 55 1.507141 CTGTCGACTGTTTGTGGCCC 61.507 60.000 17.92 0.00 0.00 5.80
55 56 0.814010 ACTGTCGACTGTTTGTGGCC 60.814 55.000 20.91 0.00 0.00 5.36
56 57 0.582005 GACTGTCGACTGTTTGTGGC 59.418 55.000 26.07 10.93 0.00 5.01
57 58 2.225068 AGACTGTCGACTGTTTGTGG 57.775 50.000 26.07 5.47 0.00 4.17
58 59 3.966154 AGTAGACTGTCGACTGTTTGTG 58.034 45.455 26.07 6.70 31.09 3.33
59 60 4.820716 AGTAGTAGACTGTCGACTGTTTGT 59.179 41.667 26.99 16.97 36.87 2.83
60 61 5.359716 AGTAGTAGACTGTCGACTGTTTG 57.640 43.478 26.99 9.81 36.87 2.93
61 62 4.455190 GGAGTAGTAGACTGTCGACTGTTT 59.545 45.833 26.99 22.77 39.06 2.83
62 63 4.002316 GGAGTAGTAGACTGTCGACTGTT 58.998 47.826 26.99 17.32 39.06 3.16
63 64 3.007723 TGGAGTAGTAGACTGTCGACTGT 59.992 47.826 26.99 25.72 39.06 3.55
64 65 3.371591 GTGGAGTAGTAGACTGTCGACTG 59.628 52.174 26.99 19.56 39.06 3.51
65 66 3.007723 TGTGGAGTAGTAGACTGTCGACT 59.992 47.826 23.62 23.62 39.06 4.18
66 67 3.332919 TGTGGAGTAGTAGACTGTCGAC 58.667 50.000 9.11 9.11 39.06 4.20
67 68 3.690475 TGTGGAGTAGTAGACTGTCGA 57.310 47.619 1.52 0.00 39.06 4.20
68 69 3.312973 GGATGTGGAGTAGTAGACTGTCG 59.687 52.174 1.52 0.00 39.06 4.35
69 70 3.633065 GGGATGTGGAGTAGTAGACTGTC 59.367 52.174 0.00 0.00 39.06 3.51
70 71 3.627747 GGGGATGTGGAGTAGTAGACTGT 60.628 52.174 0.00 0.00 39.06 3.55
71 72 2.959707 GGGGATGTGGAGTAGTAGACTG 59.040 54.545 0.00 0.00 39.06 3.51
72 73 2.091222 GGGGGATGTGGAGTAGTAGACT 60.091 54.545 0.00 0.00 42.90 3.24
73 74 2.317973 GGGGGATGTGGAGTAGTAGAC 58.682 57.143 0.00 0.00 0.00 2.59
74 75 1.934480 TGGGGGATGTGGAGTAGTAGA 59.066 52.381 0.00 0.00 0.00 2.59
75 76 2.040178 GTGGGGGATGTGGAGTAGTAG 58.960 57.143 0.00 0.00 0.00 2.57
76 77 1.363280 TGTGGGGGATGTGGAGTAGTA 59.637 52.381 0.00 0.00 0.00 1.82
77 78 0.118346 TGTGGGGGATGTGGAGTAGT 59.882 55.000 0.00 0.00 0.00 2.73
78 79 0.541863 GTGTGGGGGATGTGGAGTAG 59.458 60.000 0.00 0.00 0.00 2.57
79 80 0.912487 GGTGTGGGGGATGTGGAGTA 60.912 60.000 0.00 0.00 0.00 2.59
80 81 2.231380 GGTGTGGGGGATGTGGAGT 61.231 63.158 0.00 0.00 0.00 3.85
81 82 2.677228 GGTGTGGGGGATGTGGAG 59.323 66.667 0.00 0.00 0.00 3.86
82 83 2.938798 GGGTGTGGGGGATGTGGA 60.939 66.667 0.00 0.00 0.00 4.02
83 84 2.572333 GATGGGTGTGGGGGATGTGG 62.572 65.000 0.00 0.00 0.00 4.17
84 85 1.076777 GATGGGTGTGGGGGATGTG 60.077 63.158 0.00 0.00 0.00 3.21
85 86 2.316586 GGATGGGTGTGGGGGATGT 61.317 63.158 0.00 0.00 0.00 3.06
86 87 2.288642 CTGGATGGGTGTGGGGGATG 62.289 65.000 0.00 0.00 0.00 3.51
87 88 2.008723 CTGGATGGGTGTGGGGGAT 61.009 63.158 0.00 0.00 0.00 3.85
88 89 2.613696 CTGGATGGGTGTGGGGGA 60.614 66.667 0.00 0.00 0.00 4.81
89 90 3.743017 CCTGGATGGGTGTGGGGG 61.743 72.222 0.00 0.00 0.00 5.40
106 107 1.153647 GCGCCAAATAGGGTTTGCC 60.154 57.895 0.00 0.00 38.09 4.52
107 108 0.458370 CAGCGCCAAATAGGGTTTGC 60.458 55.000 2.29 0.00 38.09 3.68
108 109 0.887933 ACAGCGCCAAATAGGGTTTG 59.112 50.000 2.29 0.00 38.09 2.93
109 110 2.365582 CTACAGCGCCAAATAGGGTTT 58.634 47.619 2.29 0.00 38.09 3.27
110 111 1.408266 CCTACAGCGCCAAATAGGGTT 60.408 52.381 2.29 0.00 38.09 4.11
111 112 0.180406 CCTACAGCGCCAAATAGGGT 59.820 55.000 2.29 0.00 38.09 4.34
112 113 1.166531 GCCTACAGCGCCAAATAGGG 61.167 60.000 19.62 9.14 35.65 3.53
113 114 2.321213 GCCTACAGCGCCAAATAGG 58.679 57.895 15.85 15.85 37.79 2.57
124 125 4.514577 CAGGACCGGCGCCTACAG 62.515 72.222 26.68 12.93 33.51 2.74
156 157 1.489560 AATACCTAGATGGGCGGCCC 61.490 60.000 31.41 31.41 45.71 5.80
157 158 1.066358 GTAATACCTAGATGGGCGGCC 60.066 57.143 23.42 23.42 41.11 6.13
158 159 1.900486 AGTAATACCTAGATGGGCGGC 59.100 52.381 0.00 0.00 41.11 6.53
159 160 4.283722 AGAAAGTAATACCTAGATGGGCGG 59.716 45.833 0.00 0.00 41.11 6.13
160 161 5.221461 ACAGAAAGTAATACCTAGATGGGCG 60.221 44.000 0.00 0.00 41.11 6.13
161 162 5.992217 CACAGAAAGTAATACCTAGATGGGC 59.008 44.000 0.00 0.00 41.11 5.36
162 163 7.125792 ACACAGAAAGTAATACCTAGATGGG 57.874 40.000 0.00 0.00 41.11 4.00
170 171 9.177304 GCAGTTTTAAACACAGAAAGTAATACC 57.823 33.333 10.60 0.00 0.00 2.73
171 172 9.724839 TGCAGTTTTAAACACAGAAAGTAATAC 57.275 29.630 10.60 0.00 0.00 1.89
173 174 9.646427 TTTGCAGTTTTAAACACAGAAAGTAAT 57.354 25.926 10.60 0.00 0.00 1.89
174 175 9.477484 TTTTGCAGTTTTAAACACAGAAAGTAA 57.523 25.926 10.60 0.00 0.00 2.24
175 176 9.477484 TTTTTGCAGTTTTAAACACAGAAAGTA 57.523 25.926 10.60 0.00 0.00 2.24
176 177 7.954788 TTTTGCAGTTTTAAACACAGAAAGT 57.045 28.000 10.60 0.00 0.00 2.66
208 209 1.543941 GAATCAGATCCAGCGCGTCG 61.544 60.000 8.43 0.00 0.00 5.12
209 210 1.543941 CGAATCAGATCCAGCGCGTC 61.544 60.000 8.43 0.00 0.00 5.19
210 211 1.589993 CGAATCAGATCCAGCGCGT 60.590 57.895 8.43 0.00 0.00 6.01
211 212 0.871592 TTCGAATCAGATCCAGCGCG 60.872 55.000 0.00 0.00 0.00 6.86
212 213 0.579156 GTTCGAATCAGATCCAGCGC 59.421 55.000 0.00 0.00 0.00 5.92
213 214 1.212616 GGTTCGAATCAGATCCAGCG 58.787 55.000 2.82 0.00 31.88 5.18
214 215 1.587547 GGGTTCGAATCAGATCCAGC 58.412 55.000 11.19 0.00 32.91 4.85
215 216 1.858091 CGGGTTCGAATCAGATCCAG 58.142 55.000 11.19 0.00 39.00 3.86
216 217 0.179084 GCGGGTTCGAATCAGATCCA 60.179 55.000 13.00 0.00 39.00 3.41
217 218 1.215655 CGCGGGTTCGAATCAGATCC 61.216 60.000 13.00 2.10 39.00 3.36
218 219 0.248907 TCGCGGGTTCGAATCAGATC 60.249 55.000 13.00 0.00 39.00 2.75
219 220 0.527817 GTCGCGGGTTCGAATCAGAT 60.528 55.000 13.00 0.00 40.43 2.90
220 221 1.153901 GTCGCGGGTTCGAATCAGA 60.154 57.895 13.00 4.66 40.43 3.27
221 222 2.165301 GGTCGCGGGTTCGAATCAG 61.165 63.158 11.19 7.55 40.43 2.90
222 223 2.125832 GGTCGCGGGTTCGAATCA 60.126 61.111 11.19 0.00 40.43 2.57
223 224 1.877165 GAGGTCGCGGGTTCGAATC 60.877 63.158 6.13 0.00 40.43 2.52
224 225 2.183555 GAGGTCGCGGGTTCGAAT 59.816 61.111 6.13 0.00 40.43 3.34
225 226 4.060038 GGAGGTCGCGGGTTCGAA 62.060 66.667 6.13 0.00 40.43 3.71
227 228 4.796231 CAGGAGGTCGCGGGTTCG 62.796 72.222 6.13 0.00 39.81 3.95
228 229 3.379445 TCAGGAGGTCGCGGGTTC 61.379 66.667 6.13 0.74 0.00 3.62
229 230 3.692406 GTCAGGAGGTCGCGGGTT 61.692 66.667 6.13 0.00 0.00 4.11
232 233 2.439701 TAGGTCAGGAGGTCGCGG 60.440 66.667 6.13 0.00 0.00 6.46
233 234 0.820074 ATCTAGGTCAGGAGGTCGCG 60.820 60.000 0.00 0.00 0.00 5.87
234 235 1.881324 GTATCTAGGTCAGGAGGTCGC 59.119 57.143 0.00 0.00 0.00 5.19
235 236 3.404899 GAGTATCTAGGTCAGGAGGTCG 58.595 54.545 0.00 0.00 0.00 4.79
250 251 4.045104 CGTAGTGGTTGCATGAGAGTATC 58.955 47.826 0.00 0.00 0.00 2.24
251 252 3.738281 GCGTAGTGGTTGCATGAGAGTAT 60.738 47.826 0.00 0.00 0.00 2.12
252 253 2.416836 GCGTAGTGGTTGCATGAGAGTA 60.417 50.000 0.00 0.00 0.00 2.59
253 254 1.673033 GCGTAGTGGTTGCATGAGAGT 60.673 52.381 0.00 0.00 0.00 3.24
254 255 1.002366 GCGTAGTGGTTGCATGAGAG 58.998 55.000 0.00 0.00 0.00 3.20
255 256 0.391130 GGCGTAGTGGTTGCATGAGA 60.391 55.000 0.00 0.00 0.00 3.27
256 257 0.673333 TGGCGTAGTGGTTGCATGAG 60.673 55.000 0.00 0.00 0.00 2.90
257 258 0.953471 GTGGCGTAGTGGTTGCATGA 60.953 55.000 0.00 0.00 0.00 3.07
258 259 0.955428 AGTGGCGTAGTGGTTGCATG 60.955 55.000 0.00 0.00 0.00 4.06
259 260 0.611200 TAGTGGCGTAGTGGTTGCAT 59.389 50.000 0.00 0.00 0.00 3.96
260 261 0.611200 ATAGTGGCGTAGTGGTTGCA 59.389 50.000 0.00 0.00 0.00 4.08
261 262 1.006832 CATAGTGGCGTAGTGGTTGC 58.993 55.000 0.00 0.00 0.00 4.17
262 263 1.006832 GCATAGTGGCGTAGTGGTTG 58.993 55.000 0.00 0.00 0.00 3.77
263 264 0.611200 TGCATAGTGGCGTAGTGGTT 59.389 50.000 0.00 0.00 36.28 3.67
264 265 0.175760 CTGCATAGTGGCGTAGTGGT 59.824 55.000 0.00 0.00 36.28 4.16
265 266 0.459899 TCTGCATAGTGGCGTAGTGG 59.540 55.000 0.00 0.00 36.28 4.00
266 267 1.405463 TCTCTGCATAGTGGCGTAGTG 59.595 52.381 0.00 0.00 36.28 2.74
267 268 1.763968 TCTCTGCATAGTGGCGTAGT 58.236 50.000 0.00 0.00 36.28 2.73
268 269 2.556189 AGATCTCTGCATAGTGGCGTAG 59.444 50.000 0.00 0.00 36.28 3.51
269 270 2.294512 CAGATCTCTGCATAGTGGCGTA 59.705 50.000 0.00 0.00 37.15 4.42
270 271 1.068281 CAGATCTCTGCATAGTGGCGT 59.932 52.381 0.00 0.00 37.15 5.68
271 272 1.604947 CCAGATCTCTGCATAGTGGCG 60.605 57.143 0.00 0.00 42.47 5.69
272 273 1.877258 GCCAGATCTCTGCATAGTGGC 60.877 57.143 13.99 13.99 42.47 5.01
273 274 1.415289 TGCCAGATCTCTGCATAGTGG 59.585 52.381 11.49 1.35 42.47 4.00
274 275 2.904697 TGCCAGATCTCTGCATAGTG 57.095 50.000 11.49 0.00 42.47 2.74
275 276 3.539604 GTTTGCCAGATCTCTGCATAGT 58.460 45.455 15.28 0.00 42.47 2.12
276 277 2.877168 GGTTTGCCAGATCTCTGCATAG 59.123 50.000 15.28 0.00 42.47 2.23
277 278 2.507058 AGGTTTGCCAGATCTCTGCATA 59.493 45.455 15.28 9.34 42.47 3.14
278 279 1.284198 AGGTTTGCCAGATCTCTGCAT 59.716 47.619 15.28 0.66 42.47 3.96
279 280 0.694771 AGGTTTGCCAGATCTCTGCA 59.305 50.000 11.49 11.49 42.47 4.41
280 281 1.093159 CAGGTTTGCCAGATCTCTGC 58.907 55.000 6.78 6.78 42.47 4.26
281 282 2.630158 CTCAGGTTTGCCAGATCTCTG 58.370 52.381 0.00 0.00 43.40 3.35
282 283 1.065564 GCTCAGGTTTGCCAGATCTCT 60.066 52.381 0.00 0.00 37.19 3.10
283 284 1.065564 AGCTCAGGTTTGCCAGATCTC 60.066 52.381 0.00 0.00 37.19 2.75
284 285 0.990374 AGCTCAGGTTTGCCAGATCT 59.010 50.000 0.00 0.00 37.19 2.75
285 286 1.831580 AAGCTCAGGTTTGCCAGATC 58.168 50.000 0.00 0.00 37.19 2.75
286 287 2.165998 GAAAGCTCAGGTTTGCCAGAT 58.834 47.619 6.57 0.00 33.25 2.90
287 288 1.143684 AGAAAGCTCAGGTTTGCCAGA 59.856 47.619 6.57 0.00 33.25 3.86
288 289 1.538950 GAGAAAGCTCAGGTTTGCCAG 59.461 52.381 6.57 0.00 40.96 4.85
289 290 1.609208 GAGAAAGCTCAGGTTTGCCA 58.391 50.000 6.57 0.00 40.96 4.92
290 291 0.884514 GGAGAAAGCTCAGGTTTGCC 59.115 55.000 6.57 4.37 43.14 4.52
291 292 1.902938 AGGAGAAAGCTCAGGTTTGC 58.097 50.000 6.57 0.00 43.14 3.68
292 293 3.749226 AGAAGGAGAAAGCTCAGGTTTG 58.251 45.455 6.57 0.00 43.14 2.93
293 294 4.445557 AAGAAGGAGAAAGCTCAGGTTT 57.554 40.909 0.18 0.18 43.14 3.27
294 295 4.445557 AAAGAAGGAGAAAGCTCAGGTT 57.554 40.909 0.00 0.00 43.14 3.50
295 296 4.445557 AAAAGAAGGAGAAAGCTCAGGT 57.554 40.909 0.00 0.00 43.14 4.00
296 297 6.883756 AGAATAAAAGAAGGAGAAAGCTCAGG 59.116 38.462 0.00 0.00 43.14 3.86
297 298 7.920160 AGAATAAAAGAAGGAGAAAGCTCAG 57.080 36.000 0.00 0.00 43.14 3.35
298 299 8.697507 AAAGAATAAAAGAAGGAGAAAGCTCA 57.302 30.769 0.00 0.00 43.14 4.26
299 300 9.008965 AGAAAGAATAAAAGAAGGAGAAAGCTC 57.991 33.333 0.00 0.00 40.54 4.09
300 301 8.932434 AGAAAGAATAAAAGAAGGAGAAAGCT 57.068 30.769 0.00 0.00 0.00 3.74
301 302 9.973450 AAAGAAAGAATAAAAGAAGGAGAAAGC 57.027 29.630 0.00 0.00 0.00 3.51
303 304 9.750125 GCAAAGAAAGAATAAAAGAAGGAGAAA 57.250 29.630 0.00 0.00 0.00 2.52
304 305 8.360390 GGCAAAGAAAGAATAAAAGAAGGAGAA 58.640 33.333 0.00 0.00 0.00 2.87
305 306 7.725844 AGGCAAAGAAAGAATAAAAGAAGGAGA 59.274 33.333 0.00 0.00 0.00 3.71
306 307 7.890515 AGGCAAAGAAAGAATAAAAGAAGGAG 58.109 34.615 0.00 0.00 0.00 3.69
307 308 7.839680 AGGCAAAGAAAGAATAAAAGAAGGA 57.160 32.000 0.00 0.00 0.00 3.36
308 309 8.893219 AAAGGCAAAGAAAGAATAAAAGAAGG 57.107 30.769 0.00 0.00 0.00 3.46
339 340 8.387354 GCGAAAAGGAAAATGAAAGAAAGAAAA 58.613 29.630 0.00 0.00 0.00 2.29
340 341 7.763985 AGCGAAAAGGAAAATGAAAGAAAGAAA 59.236 29.630 0.00 0.00 0.00 2.52
341 342 7.264947 AGCGAAAAGGAAAATGAAAGAAAGAA 58.735 30.769 0.00 0.00 0.00 2.52
342 343 6.805713 AGCGAAAAGGAAAATGAAAGAAAGA 58.194 32.000 0.00 0.00 0.00 2.52
343 344 7.468922 AAGCGAAAAGGAAAATGAAAGAAAG 57.531 32.000 0.00 0.00 0.00 2.62
344 345 7.841915 AAAGCGAAAAGGAAAATGAAAGAAA 57.158 28.000 0.00 0.00 0.00 2.52
345 346 7.841915 AAAAGCGAAAAGGAAAATGAAAGAA 57.158 28.000 0.00 0.00 0.00 2.52
346 347 7.841915 AAAAAGCGAAAAGGAAAATGAAAGA 57.158 28.000 0.00 0.00 0.00 2.52
387 388 5.782893 AATCAACGAACCAGGATGAAAAA 57.217 34.783 0.00 0.00 39.69 1.94
388 389 5.782893 AAATCAACGAACCAGGATGAAAA 57.217 34.783 0.00 0.00 39.69 2.29
389 390 5.068460 ACAAAATCAACGAACCAGGATGAAA 59.932 36.000 0.00 0.00 39.69 2.69
390 391 4.582656 ACAAAATCAACGAACCAGGATGAA 59.417 37.500 0.00 0.00 39.69 2.57
391 392 4.141287 ACAAAATCAACGAACCAGGATGA 58.859 39.130 0.00 0.00 39.69 2.92
392 393 4.503741 ACAAAATCAACGAACCAGGATG 57.496 40.909 0.00 0.00 0.00 3.51
393 394 5.288804 CAAACAAAATCAACGAACCAGGAT 58.711 37.500 0.00 0.00 0.00 3.24
394 395 4.677584 CAAACAAAATCAACGAACCAGGA 58.322 39.130 0.00 0.00 0.00 3.86
395 396 3.245048 GCAAACAAAATCAACGAACCAGG 59.755 43.478 0.00 0.00 0.00 4.45
396 397 3.862267 TGCAAACAAAATCAACGAACCAG 59.138 39.130 0.00 0.00 0.00 4.00
397 398 3.849911 TGCAAACAAAATCAACGAACCA 58.150 36.364 0.00 0.00 0.00 3.67
398 399 4.849111 TTGCAAACAAAATCAACGAACC 57.151 36.364 0.00 0.00 31.21 3.62
410 411 6.809196 AGAAAAGTTGACGTATTTGCAAACAA 59.191 30.769 15.41 10.87 0.00 2.83
411 412 6.326375 AGAAAAGTTGACGTATTTGCAAACA 58.674 32.000 15.41 0.00 0.00 2.83
412 413 6.806120 AGAAAAGTTGACGTATTTGCAAAC 57.194 33.333 15.41 2.12 0.00 2.93
413 414 7.820044 AAAGAAAAGTTGACGTATTTGCAAA 57.180 28.000 15.44 15.44 0.00 3.68
414 415 7.820044 AAAAGAAAAGTTGACGTATTTGCAA 57.180 28.000 0.00 0.00 0.00 4.08
415 416 8.912787 TTAAAAGAAAAGTTGACGTATTTGCA 57.087 26.923 0.00 0.00 0.00 4.08
421 422 9.588774 CATCGAATTAAAAGAAAAGTTGACGTA 57.411 29.630 0.00 0.00 0.00 3.57
422 423 8.339714 TCATCGAATTAAAAGAAAAGTTGACGT 58.660 29.630 0.00 0.00 0.00 4.34
423 424 8.708075 TCATCGAATTAAAAGAAAAGTTGACG 57.292 30.769 0.00 0.00 0.00 4.35
510 511 6.155475 ACAAAGATCACCGATTTGGAAAAA 57.845 33.333 8.66 0.00 42.00 1.94
511 512 5.561919 CGACAAAGATCACCGATTTGGAAAA 60.562 40.000 8.66 0.00 42.00 2.29
512 513 4.083537 CGACAAAGATCACCGATTTGGAAA 60.084 41.667 8.66 0.00 42.00 3.13
513 514 3.435327 CGACAAAGATCACCGATTTGGAA 59.565 43.478 8.66 0.00 42.00 3.53
514 515 3.000041 CGACAAAGATCACCGATTTGGA 59.000 45.455 8.66 0.00 42.00 3.53
515 516 3.000041 TCGACAAAGATCACCGATTTGG 59.000 45.455 8.66 0.00 46.41 3.28
516 517 4.661993 TTCGACAAAGATCACCGATTTG 57.338 40.909 0.00 0.00 39.32 2.32
517 518 5.682943 TTTTCGACAAAGATCACCGATTT 57.317 34.783 0.00 0.00 0.00 2.17
518 519 5.445939 CGATTTTCGACAAAGATCACCGATT 60.446 40.000 0.00 0.00 43.74 3.34
519 520 4.032900 CGATTTTCGACAAAGATCACCGAT 59.967 41.667 0.00 0.00 43.74 4.18
520 521 3.366724 CGATTTTCGACAAAGATCACCGA 59.633 43.478 0.00 0.00 43.74 4.69
521 522 3.366724 TCGATTTTCGACAAAGATCACCG 59.633 43.478 0.00 0.00 44.82 4.94
522 523 4.921470 TCGATTTTCGACAAAGATCACC 57.079 40.909 0.00 0.00 44.82 4.02
599 600 9.610705 TCATTGAATTTGAAAAGGTTCATTGAA 57.389 25.926 11.68 0.00 43.29 2.69
600 601 9.610705 TTCATTGAATTTGAAAAGGTTCATTGA 57.389 25.926 10.70 10.70 43.29 2.57
601 602 9.654417 GTTCATTGAATTTGAAAAGGTTCATTG 57.346 29.630 1.78 7.68 43.29 2.82
602 603 9.617523 AGTTCATTGAATTTGAAAAGGTTCATT 57.382 25.926 1.78 0.00 43.29 2.57
603 604 9.617523 AAGTTCATTGAATTTGAAAAGGTTCAT 57.382 25.926 6.37 0.00 43.29 2.57
604 605 9.447157 AAAGTTCATTGAATTTGAAAAGGTTCA 57.553 25.926 7.78 0.00 42.12 3.18
623 624 9.874205 AGTTCATCAAATTTGAGAAAAAGTTCA 57.126 25.926 24.17 0.00 41.08 3.18
631 632 9.128107 GCGAAATAAGTTCATCAAATTTGAGAA 57.872 29.630 24.17 21.72 41.08 2.87
632 633 8.296000 TGCGAAATAAGTTCATCAAATTTGAGA 58.704 29.630 24.17 18.01 41.08 3.27
633 634 8.451687 TGCGAAATAAGTTCATCAAATTTGAG 57.548 30.769 24.17 16.29 41.08 3.02
634 635 8.984891 ATGCGAAATAAGTTCATCAAATTTGA 57.015 26.923 22.52 22.52 42.14 2.69
637 638 9.421806 TCAAATGCGAAATAAGTTCATCAAATT 57.578 25.926 0.00 0.00 35.83 1.82
638 639 8.984891 TCAAATGCGAAATAAGTTCATCAAAT 57.015 26.923 0.00 0.00 35.83 2.32
639 640 8.862074 CATCAAATGCGAAATAAGTTCATCAAA 58.138 29.630 0.00 0.00 35.83 2.69
640 641 8.242739 TCATCAAATGCGAAATAAGTTCATCAA 58.757 29.630 0.00 0.00 35.83 2.57
641 642 7.760437 TCATCAAATGCGAAATAAGTTCATCA 58.240 30.769 0.00 0.00 35.83 3.07
642 643 8.526681 GTTCATCAAATGCGAAATAAGTTCATC 58.473 33.333 0.00 0.00 35.83 2.92
643 644 8.246180 AGTTCATCAAATGCGAAATAAGTTCAT 58.754 29.630 0.00 0.00 35.83 2.57
644 645 7.592938 AGTTCATCAAATGCGAAATAAGTTCA 58.407 30.769 0.00 0.00 35.83 3.18
645 646 8.452989 AAGTTCATCAAATGCGAAATAAGTTC 57.547 30.769 0.00 0.00 0.00 3.01
650 651 9.220635 CGAAATAAGTTCATCAAATGCGAAATA 57.779 29.630 0.00 0.00 35.83 1.40
651 652 7.253750 GCGAAATAAGTTCATCAAATGCGAAAT 60.254 33.333 0.00 0.00 35.83 2.17
652 653 6.033407 GCGAAATAAGTTCATCAAATGCGAAA 59.967 34.615 0.00 0.00 35.83 3.46
653 654 5.511377 GCGAAATAAGTTCATCAAATGCGAA 59.489 36.000 0.00 0.00 35.83 4.70
654 655 5.027737 GCGAAATAAGTTCATCAAATGCGA 58.972 37.500 0.00 0.00 35.83 5.10
655 656 4.792702 TGCGAAATAAGTTCATCAAATGCG 59.207 37.500 0.00 0.00 35.83 4.73
656 657 6.817270 ATGCGAAATAAGTTCATCAAATGC 57.183 33.333 0.00 0.00 35.83 3.56
657 658 8.862074 TCAAATGCGAAATAAGTTCATCAAATG 58.138 29.630 0.00 0.00 35.83 2.32
658 659 8.984891 TCAAATGCGAAATAAGTTCATCAAAT 57.015 26.923 0.00 0.00 35.83 2.32
659 660 8.862074 CATCAAATGCGAAATAAGTTCATCAAA 58.138 29.630 0.00 0.00 35.83 2.69
660 661 8.242739 TCATCAAATGCGAAATAAGTTCATCAA 58.757 29.630 0.00 0.00 35.83 2.57
661 662 7.760437 TCATCAAATGCGAAATAAGTTCATCA 58.240 30.769 0.00 0.00 35.83 3.07
662 663 8.526681 GTTCATCAAATGCGAAATAAGTTCATC 58.473 33.333 0.00 0.00 35.83 2.92
663 664 8.246180 AGTTCATCAAATGCGAAATAAGTTCAT 58.754 29.630 0.00 0.00 35.83 2.57
664 665 7.592938 AGTTCATCAAATGCGAAATAAGTTCA 58.407 30.769 0.00 0.00 35.83 3.18
665 666 7.965107 AGAGTTCATCAAATGCGAAATAAGTTC 59.035 33.333 0.00 0.00 0.00 3.01
666 667 7.820648 AGAGTTCATCAAATGCGAAATAAGTT 58.179 30.769 0.00 0.00 0.00 2.66
667 668 7.383102 AGAGTTCATCAAATGCGAAATAAGT 57.617 32.000 0.00 0.00 0.00 2.24
668 669 8.679288 AAAGAGTTCATCAAATGCGAAATAAG 57.321 30.769 0.00 0.00 0.00 1.73
671 672 9.643693 AAATAAAGAGTTCATCAAATGCGAAAT 57.356 25.926 0.00 0.00 0.00 2.17
672 673 9.128107 GAAATAAAGAGTTCATCAAATGCGAAA 57.872 29.630 0.00 0.00 29.93 3.46
673 674 8.296000 TGAAATAAAGAGTTCATCAAATGCGAA 58.704 29.630 0.00 0.00 34.85 4.70
674 675 7.815641 TGAAATAAAGAGTTCATCAAATGCGA 58.184 30.769 0.00 0.00 34.85 5.10
675 676 8.451687 TTGAAATAAAGAGTTCATCAAATGCG 57.548 30.769 0.00 0.00 39.27 4.73
687 688 9.981114 CACCTAACCAAATTTGAAATAAAGAGT 57.019 29.630 19.86 2.63 0.00 3.24
688 689 9.981114 ACACCTAACCAAATTTGAAATAAAGAG 57.019 29.630 19.86 1.99 0.00 2.85
694 695 8.898761 GGAAAAACACCTAACCAAATTTGAAAT 58.101 29.630 19.86 7.54 0.00 2.17
695 696 7.883311 TGGAAAAACACCTAACCAAATTTGAAA 59.117 29.630 19.86 3.61 0.00 2.69
696 697 7.394816 TGGAAAAACACCTAACCAAATTTGAA 58.605 30.769 19.86 3.96 0.00 2.69
697 698 6.947464 TGGAAAAACACCTAACCAAATTTGA 58.053 32.000 19.86 0.00 0.00 2.69
698 699 7.617041 TTGGAAAAACACCTAACCAAATTTG 57.383 32.000 11.40 11.40 35.03 2.32
699 700 8.637196 TTTTGGAAAAACACCTAACCAAATTT 57.363 26.923 0.00 0.00 43.55 1.82
700 701 8.815565 ATTTTGGAAAAACACCTAACCAAATT 57.184 26.923 0.00 0.00 43.55 1.82
701 702 7.225734 CGATTTTGGAAAAACACCTAACCAAAT 59.774 33.333 0.00 0.00 43.55 2.32
702 703 6.535508 CGATTTTGGAAAAACACCTAACCAAA 59.464 34.615 0.00 0.00 42.81 3.28
703 704 6.043411 CGATTTTGGAAAAACACCTAACCAA 58.957 36.000 0.00 0.00 35.95 3.67
704 705 5.360144 TCGATTTTGGAAAAACACCTAACCA 59.640 36.000 0.00 0.00 0.00 3.67
705 706 5.834169 TCGATTTTGGAAAAACACCTAACC 58.166 37.500 0.00 0.00 0.00 2.85
706 707 7.940178 AATCGATTTTGGAAAAACACCTAAC 57.060 32.000 4.39 0.00 0.00 2.34
707 708 9.465985 GTTAATCGATTTTGGAAAAACACCTAA 57.534 29.630 17.19 0.00 0.00 2.69
708 709 8.852135 AGTTAATCGATTTTGGAAAAACACCTA 58.148 29.630 17.19 0.00 0.00 3.08
709 710 7.722363 AGTTAATCGATTTTGGAAAAACACCT 58.278 30.769 17.19 0.00 0.00 4.00
710 711 7.940178 AGTTAATCGATTTTGGAAAAACACC 57.060 32.000 17.19 0.00 0.00 4.16
711 712 9.244799 AGAAGTTAATCGATTTTGGAAAAACAC 57.755 29.630 17.19 10.29 0.00 3.32
712 713 9.243637 CAGAAGTTAATCGATTTTGGAAAAACA 57.756 29.630 17.19 0.00 0.00 2.83
713 714 9.244799 ACAGAAGTTAATCGATTTTGGAAAAAC 57.755 29.630 17.19 12.19 0.00 2.43
714 715 9.458374 GACAGAAGTTAATCGATTTTGGAAAAA 57.542 29.630 17.19 0.00 0.00 1.94
715 716 8.625651 TGACAGAAGTTAATCGATTTTGGAAAA 58.374 29.630 17.19 0.00 0.00 2.29
716 717 8.160521 TGACAGAAGTTAATCGATTTTGGAAA 57.839 30.769 17.19 0.66 0.00 3.13
717 718 7.737972 TGACAGAAGTTAATCGATTTTGGAA 57.262 32.000 17.19 1.08 0.00 3.53
718 719 7.921786 ATGACAGAAGTTAATCGATTTTGGA 57.078 32.000 17.19 0.00 0.00 3.53
725 726 9.430623 TCACAAAATATGACAGAAGTTAATCGA 57.569 29.630 0.00 0.00 0.00 3.59
832 833 9.150348 CGCCATTAAGGATAAAAGTTCAATTTT 57.850 29.630 0.00 0.00 41.22 1.82
833 834 8.527810 TCGCCATTAAGGATAAAAGTTCAATTT 58.472 29.630 0.00 0.00 41.22 1.82
834 835 8.062065 TCGCCATTAAGGATAAAAGTTCAATT 57.938 30.769 0.00 0.00 41.22 2.32
835 836 7.639113 TCGCCATTAAGGATAAAAGTTCAAT 57.361 32.000 0.00 0.00 41.22 2.57
836 837 7.175990 AGTTCGCCATTAAGGATAAAAGTTCAA 59.824 33.333 0.00 0.00 41.22 2.69
837 838 6.657541 AGTTCGCCATTAAGGATAAAAGTTCA 59.342 34.615 0.00 0.00 41.22 3.18
838 839 7.085052 AGTTCGCCATTAAGGATAAAAGTTC 57.915 36.000 0.00 0.00 41.22 3.01
839 840 7.462571 AAGTTCGCCATTAAGGATAAAAGTT 57.537 32.000 0.00 0.00 41.22 2.66
840 841 7.462571 AAAGTTCGCCATTAAGGATAAAAGT 57.537 32.000 0.00 0.00 41.22 2.66
841 842 8.757164 AAAAAGTTCGCCATTAAGGATAAAAG 57.243 30.769 0.00 0.00 41.22 2.27
871 872 9.889128 TCTTCCAAAAGAAAATCAAAGATTTGT 57.111 25.926 5.81 0.00 38.58 2.83
873 874 9.551734 CCTCTTCCAAAAGAAAATCAAAGATTT 57.448 29.630 0.00 0.00 40.95 2.17
874 875 8.708378 ACCTCTTCCAAAAGAAAATCAAAGATT 58.292 29.630 0.00 0.00 40.95 2.40
875 876 8.255111 ACCTCTTCCAAAAGAAAATCAAAGAT 57.745 30.769 0.00 0.00 40.95 2.40
876 877 7.660030 ACCTCTTCCAAAAGAAAATCAAAGA 57.340 32.000 0.00 0.00 40.95 2.52
877 878 7.765819 ACAACCTCTTCCAAAAGAAAATCAAAG 59.234 33.333 0.00 0.00 40.95 2.77
878 879 7.619965 ACAACCTCTTCCAAAAGAAAATCAAA 58.380 30.769 0.00 0.00 40.95 2.69
879 880 7.181569 ACAACCTCTTCCAAAAGAAAATCAA 57.818 32.000 0.00 0.00 40.95 2.57
880 881 6.790232 ACAACCTCTTCCAAAAGAAAATCA 57.210 33.333 0.00 0.00 40.95 2.57
881 882 6.479990 CCAACAACCTCTTCCAAAAGAAAATC 59.520 38.462 0.00 0.00 40.95 2.17
882 883 6.348498 CCAACAACCTCTTCCAAAAGAAAAT 58.652 36.000 0.00 0.00 40.95 1.82
883 884 5.337975 CCCAACAACCTCTTCCAAAAGAAAA 60.338 40.000 0.00 0.00 40.95 2.29
884 885 4.161377 CCCAACAACCTCTTCCAAAAGAAA 59.839 41.667 0.00 0.00 40.95 2.52
885 886 3.704061 CCCAACAACCTCTTCCAAAAGAA 59.296 43.478 0.00 0.00 40.95 2.52
886 887 3.295973 CCCAACAACCTCTTCCAAAAGA 58.704 45.455 0.00 0.00 39.22 2.52
887 888 2.224042 GCCCAACAACCTCTTCCAAAAG 60.224 50.000 0.00 0.00 0.00 2.27
888 889 1.760029 GCCCAACAACCTCTTCCAAAA 59.240 47.619 0.00 0.00 0.00 2.44
889 890 1.408969 GCCCAACAACCTCTTCCAAA 58.591 50.000 0.00 0.00 0.00 3.28
890 891 0.469144 GGCCCAACAACCTCTTCCAA 60.469 55.000 0.00 0.00 0.00 3.53
891 892 1.152830 GGCCCAACAACCTCTTCCA 59.847 57.895 0.00 0.00 0.00 3.53
892 893 1.971695 CGGCCCAACAACCTCTTCC 60.972 63.158 0.00 0.00 0.00 3.46
893 894 1.971695 CCGGCCCAACAACCTCTTC 60.972 63.158 0.00 0.00 0.00 2.87
894 895 2.115266 CCGGCCCAACAACCTCTT 59.885 61.111 0.00 0.00 0.00 2.85
895 896 4.660938 GCCGGCCCAACAACCTCT 62.661 66.667 18.11 0.00 0.00 3.69
915 916 4.373116 TCACGCGGGTCTCCTTGC 62.373 66.667 8.89 0.00 0.00 4.01
916 917 2.125912 CTCACGCGGGTCTCCTTG 60.126 66.667 8.89 0.00 0.00 3.61
917 918 4.070552 GCTCACGCGGGTCTCCTT 62.071 66.667 8.89 0.00 0.00 3.36
935 936 2.512515 CCACTTAGCGCTCCTGGC 60.513 66.667 16.34 0.00 37.64 4.85
936 937 2.512515 GCCACTTAGCGCTCCTGG 60.513 66.667 16.34 18.15 0.00 4.45
944 945 2.754995 GCCTTCTGCGCCACTTAGC 61.755 63.158 4.18 0.00 0.00 3.09
945 946 3.490890 GCCTTCTGCGCCACTTAG 58.509 61.111 4.18 0.00 0.00 2.18
954 955 2.176792 CTTTTCGGCGCCTTCTGC 59.823 61.111 26.68 0.00 0.00 4.26
955 956 1.639298 CTCCTTTTCGGCGCCTTCTG 61.639 60.000 26.68 9.07 0.00 3.02
956 957 1.376037 CTCCTTTTCGGCGCCTTCT 60.376 57.895 26.68 0.00 0.00 2.85
957 958 3.040414 GCTCCTTTTCGGCGCCTTC 62.040 63.158 26.68 0.00 37.54 3.46
958 959 3.056328 GCTCCTTTTCGGCGCCTT 61.056 61.111 26.68 0.00 37.54 4.35
959 960 3.959991 GAGCTCCTTTTCGGCGCCT 62.960 63.158 26.68 0.00 44.75 5.52
960 961 3.500642 GAGCTCCTTTTCGGCGCC 61.501 66.667 19.07 19.07 44.75 6.53
961 962 3.500642 GGAGCTCCTTTTCGGCGC 61.501 66.667 26.25 0.00 43.98 6.53
962 963 2.820037 GGGAGCTCCTTTTCGGCG 60.820 66.667 31.36 0.00 35.95 6.46
963 964 2.438614 GGGGAGCTCCTTTTCGGC 60.439 66.667 31.36 13.25 35.95 5.54
964 965 2.272471 GGGGGAGCTCCTTTTCGG 59.728 66.667 31.36 0.00 35.95 4.30
979 980 3.450115 GTCGTCGACTGGAGGGGG 61.450 72.222 18.09 0.00 0.00 5.40
980 981 2.675423 TGTCGTCGACTGGAGGGG 60.675 66.667 24.75 0.00 33.15 4.79
981 982 2.567049 GTGTCGTCGACTGGAGGG 59.433 66.667 24.75 0.00 33.15 4.30
982 983 1.595993 ATGGTGTCGTCGACTGGAGG 61.596 60.000 24.75 0.00 33.15 4.30
983 984 0.456824 CATGGTGTCGTCGACTGGAG 60.457 60.000 24.75 8.60 33.15 3.86
1056 1063 1.736612 GTAGGAGGTCGTCGTCTTCT 58.263 55.000 2.61 3.65 0.00 2.85
1599 1615 1.302033 GCCCCATATGCCAGACTCG 60.302 63.158 0.00 0.00 0.00 4.18
1677 1696 1.834188 ACCAGTAAAGGGCATTTCCG 58.166 50.000 0.00 0.00 34.94 4.30
1800 1822 1.762957 GCTACCATGACCTGAAGGCTA 59.237 52.381 0.00 0.00 39.32 3.93
1879 1901 2.455674 TCATCACAACTGACCTTCCG 57.544 50.000 0.00 0.00 0.00 4.30
2071 2104 2.559698 TTGTCTTTGCCGAGATTCCA 57.440 45.000 0.00 0.00 0.00 3.53
2197 2233 7.786030 TCACATTATTCCAGGAAACAAAACAA 58.214 30.769 5.81 0.00 0.00 2.83
2198 2234 7.353414 TCACATTATTCCAGGAAACAAAACA 57.647 32.000 5.81 0.00 0.00 2.83
2199 2235 9.573133 CTATCACATTATTCCAGGAAACAAAAC 57.427 33.333 5.81 0.00 0.00 2.43
2200 2236 9.308000 ACTATCACATTATTCCAGGAAACAAAA 57.692 29.630 5.81 0.00 0.00 2.44
2201 2237 8.877864 ACTATCACATTATTCCAGGAAACAAA 57.122 30.769 5.81 1.74 0.00 2.83
2243 2282 7.757097 ATACGACAAGTAGATTTAAGCAGTG 57.243 36.000 0.00 0.00 38.94 3.66
2415 2703 5.243981 AGGATATGAAATGAGCGGAGAATG 58.756 41.667 0.00 0.00 0.00 2.67
2522 2814 6.122277 AGATAGGAAAGATGCGGAAAATGAA 58.878 36.000 0.00 0.00 0.00 2.57
2581 2873 4.740205 CACACACACACTAACTAGTCAGTG 59.260 45.833 22.44 22.44 46.15 3.66
2723 3017 6.432783 TGTGATATTGTGGGAAAAACTACTGG 59.567 38.462 0.00 0.00 0.00 4.00
2844 3138 6.324819 CAAGAGACTGAGAAAACAAGCAAAA 58.675 36.000 0.00 0.00 0.00 2.44
2889 3184 6.018469 TCATCAGACTGGGAAAATGGAAAAT 58.982 36.000 1.81 0.00 0.00 1.82
2960 3261 0.531974 TGCAAAGACGTCACCAGTCC 60.532 55.000 19.50 0.00 39.31 3.85
2961 3262 0.582005 GTGCAAAGACGTCACCAGTC 59.418 55.000 19.50 2.13 38.81 3.51
2962 3263 2.690326 GTGCAAAGACGTCACCAGT 58.310 52.632 19.50 0.00 0.00 4.00
3026 3327 0.247736 AGCTGCTTCGTTACCTCCTG 59.752 55.000 0.00 0.00 0.00 3.86
3169 3472 9.905713 TTTCAGATTAAGGACATTGCTAATAGT 57.094 29.630 0.00 0.00 0.00 2.12
3206 5192 0.826715 CTAACTAGCAGGGCAGCAGA 59.173 55.000 0.00 0.00 36.85 4.26
3274 5264 8.030692 GGCACACACGAACCTGTTATATATATA 58.969 37.037 0.00 0.00 0.00 0.86
3276 5266 6.183360 TGGCACACACGAACCTGTTATATATA 60.183 38.462 0.00 0.00 0.00 0.86
3277 5267 5.054477 GGCACACACGAACCTGTTATATAT 58.946 41.667 0.00 0.00 0.00 0.86
3278 5268 4.081586 TGGCACACACGAACCTGTTATATA 60.082 41.667 0.00 0.00 0.00 0.86
3279 5269 3.267483 GGCACACACGAACCTGTTATAT 58.733 45.455 0.00 0.00 0.00 0.86
3280 5270 2.037381 TGGCACACACGAACCTGTTATA 59.963 45.455 0.00 0.00 0.00 0.98
3310 5300 2.418083 CCCCGCTTGGAATCTTGGC 61.418 63.158 0.00 0.00 35.39 4.52
3337 5327 3.343617 ACAAACCCACAATATCCACTCG 58.656 45.455 0.00 0.00 0.00 4.18
3339 5329 4.042809 TCAGACAAACCCACAATATCCACT 59.957 41.667 0.00 0.00 0.00 4.00
3340 5330 4.156008 GTCAGACAAACCCACAATATCCAC 59.844 45.833 0.00 0.00 0.00 4.02
3356 5346 0.108585 GTCAAGGCCCAAGTCAGACA 59.891 55.000 0.00 0.00 0.00 3.41
3369 5359 6.348376 GCAAGAAGAGAATGAAAGAGTCAAGG 60.348 42.308 0.00 0.00 40.50 3.61
3403 5393 1.266718 TGCTTTGACTTGCCGAATGTC 59.733 47.619 0.00 0.00 0.00 3.06
3406 5396 1.001378 GTGTGCTTTGACTTGCCGAAT 60.001 47.619 0.00 0.00 0.00 3.34
3426 5416 3.626670 GTCTGCATCCTTTCCTTGATCTG 59.373 47.826 0.00 0.00 0.00 2.90
3448 5438 3.717294 ACCCGGCTAGGCACAAGG 61.717 66.667 17.45 12.82 39.21 3.61
3466 5456 5.113529 CACGTCAATTCGAGTTTGTTTTAGC 59.886 40.000 9.24 0.00 34.70 3.09
3508 5498 3.517100 TGCTAAGCTTGGATCTTGTCTCT 59.483 43.478 14.82 0.00 0.00 3.10
4002 6009 6.714810 ACACCACAAGTTTCTAATAATGCAGA 59.285 34.615 0.00 0.00 0.00 4.26
4124 6133 7.256190 GCTTTCTAAAATCAAAAGTAAGGGGGT 60.256 37.037 0.00 0.00 33.53 4.95
4125 6134 7.039011 AGCTTTCTAAAATCAAAAGTAAGGGGG 60.039 37.037 0.00 0.00 33.53 5.40
4187 6196 2.955660 TCATTGGGTTGGTCACAGAAAC 59.044 45.455 0.00 0.00 0.00 2.78
4213 6224 3.492756 GCCGCTTGATTTTTGCAGTAAAA 59.507 39.130 0.00 0.00 36.51 1.52
4287 6298 1.086067 ACAATCATGGAGCGCTGTCG 61.086 55.000 18.48 0.00 39.07 4.35
4293 6304 3.770263 AAATGTGACAATCATGGAGCG 57.230 42.857 0.00 0.00 0.00 5.03
4467 6483 0.109132 CAATGTTGGAAGCGAAGGCC 60.109 55.000 0.00 0.00 41.24 5.19
4474 6490 1.956477 ACTCCACACAATGTTGGAAGC 59.044 47.619 14.76 0.00 30.93 3.86
4487 6507 0.613260 AAGGCGCTAATGACTCCACA 59.387 50.000 7.64 0.00 0.00 4.17
4489 6509 1.739035 CGAAAGGCGCTAATGACTCCA 60.739 52.381 7.64 0.00 0.00 3.86
4682 6703 1.409064 GCACACACGGATCCAGATCTA 59.591 52.381 13.41 0.00 37.92 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.