Multiple sequence alignment - TraesCS2D01G188700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G188700 chr2D 100.000 3999 0 0 1 3999 131779047 131775049 0.000000e+00 7385.0
1 TraesCS2D01G188700 chr2D 89.338 619 61 3 3385 3999 534163280 534162663 0.000000e+00 773.0
2 TraesCS2D01G188700 chr2D 88.462 624 64 6 3380 3999 344312842 344313461 0.000000e+00 747.0
3 TraesCS2D01G188700 chr2D 93.103 58 3 1 2982 3039 131764368 131764312 2.560000e-12 84.2
4 TraesCS2D01G188700 chr2B 90.630 2284 96 37 780 3049 186311390 186313569 0.000000e+00 2924.0
5 TraesCS2D01G188700 chr2B 90.490 1367 64 21 1688 3049 185776831 185775526 0.000000e+00 1744.0
6 TraesCS2D01G188700 chr2B 88.088 680 61 15 1 666 199743638 199744311 0.000000e+00 789.0
7 TraesCS2D01G188700 chr2B 83.832 167 24 2 3050 3215 90033126 90032962 5.350000e-34 156.0
8 TraesCS2D01G188700 chr2B 93.333 60 3 1 2982 3041 186376510 186376568 1.980000e-13 87.9
9 TraesCS2D01G188700 chr2A 90.250 2318 89 46 755 3041 138827871 138825660 0.000000e+00 2902.0
10 TraesCS2D01G188700 chr2A 89.715 632 57 6 3375 3999 2741739 2742369 0.000000e+00 800.0
11 TraesCS2D01G188700 chr7D 89.820 668 62 4 4 665 168504230 168503563 0.000000e+00 852.0
12 TraesCS2D01G188700 chr7D 88.856 673 64 9 1 665 378848985 378849654 0.000000e+00 817.0
13 TraesCS2D01G188700 chr7D 88.806 670 65 8 1 665 517505086 517504422 0.000000e+00 813.0
14 TraesCS2D01G188700 chr7D 88.071 679 63 12 1 665 125778302 125778976 0.000000e+00 789.0
15 TraesCS2D01G188700 chr5D 90.091 656 60 3 1 652 202832353 202831699 0.000000e+00 846.0
16 TraesCS2D01G188700 chr5D 77.569 691 108 30 1313 1978 520910016 520910684 1.360000e-99 374.0
17 TraesCS2D01G188700 chr3D 89.818 658 58 7 1 652 351244183 351244837 0.000000e+00 835.0
18 TraesCS2D01G188700 chr3D 88.658 626 63 6 3380 3999 47748674 47748051 0.000000e+00 756.0
19 TraesCS2D01G188700 chr5B 89.121 671 66 5 1 666 285621587 285622255 0.000000e+00 828.0
20 TraesCS2D01G188700 chr5B 89.032 620 56 7 3386 3999 668107798 668107185 0.000000e+00 758.0
21 TraesCS2D01G188700 chr5B 77.350 702 114 32 1313 1978 656925812 656926504 1.360000e-99 374.0
22 TraesCS2D01G188700 chr5B 80.233 172 32 2 3042 3212 395709935 395709765 1.170000e-25 128.0
23 TraesCS2D01G188700 chr5A 88.410 673 69 6 1 665 39813413 39814084 0.000000e+00 802.0
24 TraesCS2D01G188700 chr5A 78.066 693 116 25 1313 1978 649441476 649442159 4.810000e-109 405.0
25 TraesCS2D01G188700 chr5A 81.928 166 29 1 3044 3208 529307140 529307305 5.390000e-29 139.0
26 TraesCS2D01G188700 chr6A 89.984 619 58 2 3385 3999 497996301 497996919 0.000000e+00 797.0
27 TraesCS2D01G188700 chr1D 89.448 616 62 3 3385 3999 272535882 272536495 0.000000e+00 774.0
28 TraesCS2D01G188700 chr1D 85.542 166 23 1 3044 3208 16899579 16899414 5.310000e-39 172.0
29 TraesCS2D01G188700 chr1D 81.503 173 29 3 3041 3212 481404438 481404268 5.390000e-29 139.0
30 TraesCS2D01G188700 chr4B 88.800 625 62 6 3381 3999 17070222 17070844 0.000000e+00 760.0
31 TraesCS2D01G188700 chr4B 81.743 723 98 26 1272 1986 474378549 474379245 1.250000e-159 573.0
32 TraesCS2D01G188700 chr4B 90.476 42 3 1 2559 2600 474380100 474380140 2.000000e-03 54.7
33 TraesCS2D01G188700 chr3B 88.376 628 64 4 3381 3999 821758083 821758710 0.000000e+00 747.0
34 TraesCS2D01G188700 chr3B 80.588 170 32 1 3046 3214 793031766 793031935 3.240000e-26 130.0
35 TraesCS2D01G188700 chr4A 82.296 723 94 27 1272 1986 68141434 68142130 2.660000e-166 595.0
36 TraesCS2D01G188700 chr4A 90.476 42 3 1 2559 2600 68142965 68143005 2.000000e-03 54.7
37 TraesCS2D01G188700 chr4D 82.182 724 93 26 1272 1986 386831148 386831844 1.240000e-164 590.0
38 TraesCS2D01G188700 chr4D 96.774 31 1 0 2559 2589 386832715 386832745 7.000000e-03 52.8
39 TraesCS2D01G188700 chr6B 82.424 165 28 1 3048 3211 219578293 219578129 4.170000e-30 143.0
40 TraesCS2D01G188700 chr1B 81.176 170 29 3 3045 3212 120045172 120045004 2.510000e-27 134.0
41 TraesCS2D01G188700 chr3A 81.481 162 28 1 3048 3209 689082892 689082733 9.020000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G188700 chr2D 131775049 131779047 3998 True 7385.00 7385 100.0000 1 3999 1 chr2D.!!$R2 3998
1 TraesCS2D01G188700 chr2D 534162663 534163280 617 True 773.00 773 89.3380 3385 3999 1 chr2D.!!$R3 614
2 TraesCS2D01G188700 chr2D 344312842 344313461 619 False 747.00 747 88.4620 3380 3999 1 chr2D.!!$F1 619
3 TraesCS2D01G188700 chr2B 186311390 186313569 2179 False 2924.00 2924 90.6300 780 3049 1 chr2B.!!$F1 2269
4 TraesCS2D01G188700 chr2B 185775526 185776831 1305 True 1744.00 1744 90.4900 1688 3049 1 chr2B.!!$R2 1361
5 TraesCS2D01G188700 chr2B 199743638 199744311 673 False 789.00 789 88.0880 1 666 1 chr2B.!!$F3 665
6 TraesCS2D01G188700 chr2A 138825660 138827871 2211 True 2902.00 2902 90.2500 755 3041 1 chr2A.!!$R1 2286
7 TraesCS2D01G188700 chr2A 2741739 2742369 630 False 800.00 800 89.7150 3375 3999 1 chr2A.!!$F1 624
8 TraesCS2D01G188700 chr7D 168503563 168504230 667 True 852.00 852 89.8200 4 665 1 chr7D.!!$R1 661
9 TraesCS2D01G188700 chr7D 378848985 378849654 669 False 817.00 817 88.8560 1 665 1 chr7D.!!$F2 664
10 TraesCS2D01G188700 chr7D 517504422 517505086 664 True 813.00 813 88.8060 1 665 1 chr7D.!!$R2 664
11 TraesCS2D01G188700 chr7D 125778302 125778976 674 False 789.00 789 88.0710 1 665 1 chr7D.!!$F1 664
12 TraesCS2D01G188700 chr5D 202831699 202832353 654 True 846.00 846 90.0910 1 652 1 chr5D.!!$R1 651
13 TraesCS2D01G188700 chr5D 520910016 520910684 668 False 374.00 374 77.5690 1313 1978 1 chr5D.!!$F1 665
14 TraesCS2D01G188700 chr3D 351244183 351244837 654 False 835.00 835 89.8180 1 652 1 chr3D.!!$F1 651
15 TraesCS2D01G188700 chr3D 47748051 47748674 623 True 756.00 756 88.6580 3380 3999 1 chr3D.!!$R1 619
16 TraesCS2D01G188700 chr5B 285621587 285622255 668 False 828.00 828 89.1210 1 666 1 chr5B.!!$F1 665
17 TraesCS2D01G188700 chr5B 668107185 668107798 613 True 758.00 758 89.0320 3386 3999 1 chr5B.!!$R2 613
18 TraesCS2D01G188700 chr5B 656925812 656926504 692 False 374.00 374 77.3500 1313 1978 1 chr5B.!!$F2 665
19 TraesCS2D01G188700 chr5A 39813413 39814084 671 False 802.00 802 88.4100 1 665 1 chr5A.!!$F1 664
20 TraesCS2D01G188700 chr5A 649441476 649442159 683 False 405.00 405 78.0660 1313 1978 1 chr5A.!!$F3 665
21 TraesCS2D01G188700 chr6A 497996301 497996919 618 False 797.00 797 89.9840 3385 3999 1 chr6A.!!$F1 614
22 TraesCS2D01G188700 chr1D 272535882 272536495 613 False 774.00 774 89.4480 3385 3999 1 chr1D.!!$F1 614
23 TraesCS2D01G188700 chr4B 17070222 17070844 622 False 760.00 760 88.8000 3381 3999 1 chr4B.!!$F1 618
24 TraesCS2D01G188700 chr4B 474378549 474380140 1591 False 313.85 573 86.1095 1272 2600 2 chr4B.!!$F2 1328
25 TraesCS2D01G188700 chr3B 821758083 821758710 627 False 747.00 747 88.3760 3381 3999 1 chr3B.!!$F2 618
26 TraesCS2D01G188700 chr4A 68141434 68143005 1571 False 324.85 595 86.3860 1272 2600 2 chr4A.!!$F1 1328
27 TraesCS2D01G188700 chr4D 386831148 386832745 1597 False 321.40 590 89.4780 1272 2589 2 chr4D.!!$F1 1317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 407 0.179067 TGTTCGGCTTCTCCACGTTT 60.179 50.0 0.0 0.0 34.01 3.60 F
487 493 0.242286 CGGTCCAGTCTCTGTGTCTG 59.758 60.0 0.0 0.0 0.00 3.51 F
1224 1272 0.038892 GTGCGAGTGAGGTTCGGTAA 60.039 55.0 0.0 0.0 38.45 2.85 F
1237 1285 0.107081 TCGGTAATGTAATGGCGGGG 59.893 55.0 0.0 0.0 0.00 5.73 F
2720 3327 0.234106 CTGATTGATCGGTGCGATGC 59.766 55.0 0.0 0.0 47.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1216 1264 1.600485 CCCGCCATTACATTACCGAAC 59.400 52.381 0.00 0.0 0.00 3.95 R
2421 3028 1.153369 CGTCATCCCTGGCATCGTT 60.153 57.895 0.00 0.0 0.00 3.85 R
2950 3562 0.041238 TGAATCTGGTCCCCGAGACT 59.959 55.000 5.67 0.0 45.54 3.24 R
2956 3568 0.332972 AAAGGCTGAATCTGGTCCCC 59.667 55.000 0.00 0.0 0.00 4.81 R
3571 4185 0.038892 GCCCGACAACTTCACGACTA 60.039 55.000 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 37 2.037367 CCTCCTCCACCGACCTCA 59.963 66.667 0.00 0.00 0.00 3.86
58 62 2.759641 TACTCGGACGCTGACTGGGT 62.760 60.000 1.52 1.52 44.89 4.51
107 111 1.355916 CGGCTACTGCGTCTACCTC 59.644 63.158 0.00 0.00 40.82 3.85
127 131 1.115930 GGGCCCTCGCTGATCTCTTA 61.116 60.000 17.04 0.00 34.44 2.10
131 135 1.611491 CCCTCGCTGATCTCTTAGTCC 59.389 57.143 0.00 0.00 0.00 3.85
251 256 1.261619 CAGGAGTTGCTTTGTGACGTC 59.738 52.381 9.11 9.11 0.00 4.34
281 286 4.737946 GCCACTCTTGTCTACTGCGATAAT 60.738 45.833 0.00 0.00 0.00 1.28
402 407 0.179067 TGTTCGGCTTCTCCACGTTT 60.179 50.000 0.00 0.00 34.01 3.60
448 454 4.262635 CGTGATGACTAAGGGATTGCCTAT 60.263 45.833 0.00 0.00 0.00 2.57
487 493 0.242286 CGGTCCAGTCTCTGTGTCTG 59.758 60.000 0.00 0.00 0.00 3.51
552 575 9.435688 GTGTTGCATGTATTATGTATATCCTGA 57.564 33.333 0.00 0.00 0.00 3.86
560 583 7.737607 TGTATTATGTATATCCTGACCCACCTT 59.262 37.037 0.00 0.00 0.00 3.50
579 602 7.383687 CCACCTTCTAGTTGTGTATAGTTGAA 58.616 38.462 7.79 0.00 0.00 2.69
652 677 5.938322 ACAACGACTATTGTATTGCCAAAG 58.062 37.500 0.00 0.00 41.04 2.77
666 691 2.438021 TGCCAAAGTGTCCTTCTACAGT 59.562 45.455 0.00 0.00 34.46 3.55
667 692 3.118038 TGCCAAAGTGTCCTTCTACAGTT 60.118 43.478 0.00 0.00 43.27 3.16
668 693 3.498777 GCCAAAGTGTCCTTCTACAGTTC 59.501 47.826 0.00 0.00 41.14 3.01
669 694 3.741344 CCAAAGTGTCCTTCTACAGTTCG 59.259 47.826 0.00 0.00 41.14 3.95
670 695 3.662247 AAGTGTCCTTCTACAGTTCGG 57.338 47.619 0.00 0.00 38.36 4.30
671 696 2.872732 AGTGTCCTTCTACAGTTCGGA 58.127 47.619 0.00 0.00 28.38 4.55
672 697 2.557490 AGTGTCCTTCTACAGTTCGGAC 59.443 50.000 0.00 0.00 43.37 4.79
674 699 3.655276 GTCCTTCTACAGTTCGGACAA 57.345 47.619 0.00 0.00 42.77 3.18
675 700 3.986277 GTCCTTCTACAGTTCGGACAAA 58.014 45.455 0.00 0.00 42.77 2.83
676 701 4.566987 GTCCTTCTACAGTTCGGACAAAT 58.433 43.478 0.00 0.00 42.77 2.32
677 702 5.717119 GTCCTTCTACAGTTCGGACAAATA 58.283 41.667 0.00 0.00 42.77 1.40
678 703 5.805994 GTCCTTCTACAGTTCGGACAAATAG 59.194 44.000 0.00 0.00 42.77 1.73
679 704 5.479375 TCCTTCTACAGTTCGGACAAATAGT 59.521 40.000 0.00 0.00 0.00 2.12
680 705 5.577164 CCTTCTACAGTTCGGACAAATAGTG 59.423 44.000 0.00 0.00 0.00 2.74
681 706 5.717078 TCTACAGTTCGGACAAATAGTGT 57.283 39.130 0.00 0.00 45.74 3.55
682 707 5.466819 TCTACAGTTCGGACAAATAGTGTG 58.533 41.667 0.00 0.00 41.96 3.82
683 708 4.067972 ACAGTTCGGACAAATAGTGTGT 57.932 40.909 0.00 0.00 41.96 3.72
684 709 4.056050 ACAGTTCGGACAAATAGTGTGTC 58.944 43.478 0.00 0.00 41.96 3.67
692 717 5.950965 GACAAATAGTGTGTCCGTGATAG 57.049 43.478 0.00 0.00 41.96 2.08
693 718 4.755411 ACAAATAGTGTGTCCGTGATAGG 58.245 43.478 0.00 0.00 39.72 2.57
694 719 4.119862 CAAATAGTGTGTCCGTGATAGGG 58.880 47.826 0.00 0.00 0.00 3.53
695 720 2.812836 TAGTGTGTCCGTGATAGGGA 57.187 50.000 0.00 0.00 0.00 4.20
702 727 2.493030 CGTGATAGGGACGGCGTT 59.507 61.111 16.19 0.00 33.08 4.84
703 728 1.876714 CGTGATAGGGACGGCGTTG 60.877 63.158 16.19 0.00 33.08 4.10
704 729 1.520787 GTGATAGGGACGGCGTTGG 60.521 63.158 16.19 0.00 0.00 3.77
705 730 2.108362 GATAGGGACGGCGTTGGG 59.892 66.667 16.19 0.00 0.00 4.12
706 731 2.364579 ATAGGGACGGCGTTGGGA 60.365 61.111 16.19 0.37 0.00 4.37
707 732 2.639883 GATAGGGACGGCGTTGGGAC 62.640 65.000 16.19 0.00 0.00 4.46
721 746 4.254745 GTTGGGACGACGTAATCAAATC 57.745 45.455 0.00 0.00 0.00 2.17
722 747 2.896168 TGGGACGACGTAATCAAATCC 58.104 47.619 0.00 0.00 0.00 3.01
723 748 2.234168 TGGGACGACGTAATCAAATCCA 59.766 45.455 0.00 0.00 0.00 3.41
724 749 3.118555 TGGGACGACGTAATCAAATCCAT 60.119 43.478 0.00 0.00 0.00 3.41
725 750 4.099727 TGGGACGACGTAATCAAATCCATA 59.900 41.667 0.00 0.00 0.00 2.74
726 751 5.221561 TGGGACGACGTAATCAAATCCATAT 60.222 40.000 0.00 0.00 0.00 1.78
727 752 5.120208 GGGACGACGTAATCAAATCCATATG 59.880 44.000 0.00 0.00 0.00 1.78
728 753 5.694910 GGACGACGTAATCAAATCCATATGT 59.305 40.000 0.00 0.00 0.00 2.29
729 754 6.864685 GGACGACGTAATCAAATCCATATGTA 59.135 38.462 0.00 0.00 0.00 2.29
730 755 7.061905 GGACGACGTAATCAAATCCATATGTAG 59.938 40.741 0.00 0.00 0.00 2.74
731 756 7.654568 ACGACGTAATCAAATCCATATGTAGA 58.345 34.615 0.00 0.00 0.00 2.59
732 757 8.304596 ACGACGTAATCAAATCCATATGTAGAT 58.695 33.333 0.00 0.00 0.00 1.98
733 758 9.783256 CGACGTAATCAAATCCATATGTAGATA 57.217 33.333 1.24 0.00 0.00 1.98
740 765 8.534333 TCAAATCCATATGTAGATAGTTTCGC 57.466 34.615 1.24 0.00 0.00 4.70
741 766 7.602644 TCAAATCCATATGTAGATAGTTTCGCC 59.397 37.037 1.24 0.00 0.00 5.54
742 767 6.859112 ATCCATATGTAGATAGTTTCGCCT 57.141 37.500 1.24 0.00 0.00 5.52
743 768 6.665992 TCCATATGTAGATAGTTTCGCCTT 57.334 37.500 1.24 0.00 0.00 4.35
744 769 7.062749 TCCATATGTAGATAGTTTCGCCTTT 57.937 36.000 1.24 0.00 0.00 3.11
745 770 7.506114 TCCATATGTAGATAGTTTCGCCTTTT 58.494 34.615 1.24 0.00 0.00 2.27
746 771 8.644216 TCCATATGTAGATAGTTTCGCCTTTTA 58.356 33.333 1.24 0.00 0.00 1.52
747 772 9.436957 CCATATGTAGATAGTTTCGCCTTTTAT 57.563 33.333 1.24 0.00 0.00 1.40
749 774 7.639162 ATGTAGATAGTTTCGCCTTTTATCG 57.361 36.000 0.00 0.00 0.00 2.92
750 775 6.798482 TGTAGATAGTTTCGCCTTTTATCGA 58.202 36.000 0.00 0.00 0.00 3.59
751 776 7.259882 TGTAGATAGTTTCGCCTTTTATCGAA 58.740 34.615 0.00 0.00 42.11 3.71
752 777 6.830114 AGATAGTTTCGCCTTTTATCGAAG 57.170 37.500 0.00 0.00 44.10 3.79
799 824 3.918253 TTTCGCGAGCCAGCCCAAT 62.918 57.895 9.59 0.00 0.00 3.16
916 951 0.272235 CCCCCTCCCCTATCCTTTCT 59.728 60.000 0.00 0.00 0.00 2.52
957 992 1.945394 CATTGCCCTCATCTTTCTCCG 59.055 52.381 0.00 0.00 0.00 4.63
984 1020 2.158885 TCCAAATCAACCGACTGTCACA 60.159 45.455 8.73 0.00 0.00 3.58
1033 1076 1.134175 GAGTGAGAGTGAGCAGTAGGC 59.866 57.143 0.00 0.00 45.30 3.93
1068 1111 2.502510 CATTGCACGCGCTTGTCC 60.503 61.111 15.84 0.01 39.64 4.02
1082 1130 0.537143 TTGTCCCTCTGCATTGCGTT 60.537 50.000 3.84 0.00 0.00 4.84
1208 1256 2.159114 TGGTTTCTTCTTTGCTTGGTGC 60.159 45.455 0.00 0.00 43.25 5.01
1216 1264 1.165907 TTTGCTTGGTGCGAGTGAGG 61.166 55.000 0.00 0.00 46.63 3.86
1224 1272 0.038892 GTGCGAGTGAGGTTCGGTAA 60.039 55.000 0.00 0.00 38.45 2.85
1237 1285 0.107081 TCGGTAATGTAATGGCGGGG 59.893 55.000 0.00 0.00 0.00 5.73
1866 1941 1.086067 CGACGTCCTACTCGCAGGTA 61.086 60.000 10.58 0.00 36.99 3.08
2089 2525 5.661056 TGATCCGTTGAAGAGATTAGTGT 57.339 39.130 0.00 0.00 0.00 3.55
2114 2551 9.503427 GTCTTCCGTATGATTAAAATGGAAAAG 57.497 33.333 0.00 0.00 33.95 2.27
2184 2622 2.359230 GCAGAGCAGGGTGGACAC 60.359 66.667 0.00 0.00 0.00 3.67
2317 2921 4.823419 CCACGGTGCCGGCGATTA 62.823 66.667 23.90 0.00 44.69 1.75
2318 2922 2.816083 CACGGTGCCGGCGATTAA 60.816 61.111 23.90 0.00 44.69 1.40
2319 2923 2.177580 CACGGTGCCGGCGATTAAT 61.178 57.895 23.90 1.34 44.69 1.40
2320 2924 1.885850 ACGGTGCCGGCGATTAATC 60.886 57.895 23.90 2.26 44.69 1.75
2321 2925 2.604174 CGGTGCCGGCGATTAATCC 61.604 63.158 23.90 13.36 35.56 3.01
2322 2926 2.604174 GGTGCCGGCGATTAATCCG 61.604 63.158 23.90 9.02 44.89 4.18
2326 2930 2.935955 CGGCGATTAATCCGGTGC 59.064 61.111 0.00 7.13 41.82 5.01
2327 2931 2.604174 CGGCGATTAATCCGGTGCC 61.604 63.158 17.49 17.49 41.82 5.01
2328 2932 2.604174 GGCGATTAATCCGGTGCCG 61.604 63.158 14.00 3.25 39.44 5.69
2698 3305 0.469331 ATAGATGGAGGTCGGCGGAA 60.469 55.000 7.21 0.00 0.00 4.30
2720 3327 0.234106 CTGATTGATCGGTGCGATGC 59.766 55.000 0.00 0.00 47.00 3.91
2723 3330 1.089481 ATTGATCGGTGCGATGCGTT 61.089 50.000 0.00 0.00 47.00 4.84
2741 3348 2.223377 CGTTCGGGTGAAAAGAAAGAGG 59.777 50.000 0.00 0.00 35.46 3.69
2811 3419 7.574030 CGTGTTGATGGGATTTTGTTGTATGTA 60.574 37.037 0.00 0.00 0.00 2.29
2812 3420 7.540745 GTGTTGATGGGATTTTGTTGTATGTAC 59.459 37.037 0.00 0.00 0.00 2.90
2813 3421 7.450014 TGTTGATGGGATTTTGTTGTATGTACT 59.550 33.333 0.00 0.00 0.00 2.73
2814 3422 7.624360 TGATGGGATTTTGTTGTATGTACTC 57.376 36.000 0.00 0.00 0.00 2.59
2914 3525 2.801631 GGGCATCCCTGACCGAGAG 61.802 68.421 0.00 0.00 41.97 3.20
2927 3538 1.513158 CGAGAGAACGCAGGGACAT 59.487 57.895 0.00 0.00 0.00 3.06
2949 3561 1.021968 AGGCGGTGTTTGTTTCAGTC 58.978 50.000 0.00 0.00 0.00 3.51
2950 3562 0.736053 GGCGGTGTTTGTTTCAGTCA 59.264 50.000 0.00 0.00 0.00 3.41
2951 3563 1.268539 GGCGGTGTTTGTTTCAGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
2952 3564 1.400494 GCGGTGTTTGTTTCAGTCAGT 59.600 47.619 0.00 0.00 0.00 3.41
2953 3565 2.538939 GCGGTGTTTGTTTCAGTCAGTC 60.539 50.000 0.00 0.00 0.00 3.51
2954 3566 2.936498 CGGTGTTTGTTTCAGTCAGTCT 59.064 45.455 0.00 0.00 0.00 3.24
2955 3567 3.001330 CGGTGTTTGTTTCAGTCAGTCTC 59.999 47.826 0.00 0.00 0.00 3.36
2956 3568 3.001330 GGTGTTTGTTTCAGTCAGTCTCG 59.999 47.826 0.00 0.00 0.00 4.04
2957 3569 3.001330 GTGTTTGTTTCAGTCAGTCTCGG 59.999 47.826 0.00 0.00 0.00 4.63
2977 3589 1.821136 GGGACCAGATTCAGCCTTTTG 59.179 52.381 0.00 0.00 0.00 2.44
2978 3590 2.555227 GGGACCAGATTCAGCCTTTTGA 60.555 50.000 0.00 0.00 0.00 2.69
2981 3594 4.550422 GACCAGATTCAGCCTTTTGAAAC 58.450 43.478 0.00 0.00 40.21 2.78
2982 3595 3.960102 ACCAGATTCAGCCTTTTGAAACA 59.040 39.130 0.00 0.00 40.21 2.83
2987 3600 6.536224 CAGATTCAGCCTTTTGAAACAAAACT 59.464 34.615 5.70 1.28 40.21 2.66
2991 3604 3.934579 AGCCTTTTGAAACAAAACTGCTG 59.065 39.130 19.07 7.06 29.58 4.41
3042 3655 2.643551 TCTGATTCGAGCAATTTCCCC 58.356 47.619 0.00 0.00 0.00 4.81
3044 3657 1.065782 TGATTCGAGCAATTTCCCCGA 60.066 47.619 0.00 0.00 0.00 5.14
3045 3658 2.222027 GATTCGAGCAATTTCCCCGAT 58.778 47.619 0.00 0.00 0.00 4.18
3046 3659 1.378531 TTCGAGCAATTTCCCCGATG 58.621 50.000 0.00 0.00 0.00 3.84
3047 3660 0.251916 TCGAGCAATTTCCCCGATGT 59.748 50.000 0.00 0.00 0.00 3.06
3048 3661 1.483004 TCGAGCAATTTCCCCGATGTA 59.517 47.619 0.00 0.00 0.00 2.29
3049 3662 1.597663 CGAGCAATTTCCCCGATGTAC 59.402 52.381 0.00 0.00 0.00 2.90
3050 3663 2.741878 CGAGCAATTTCCCCGATGTACT 60.742 50.000 0.00 0.00 0.00 2.73
3051 3664 2.872858 GAGCAATTTCCCCGATGTACTC 59.127 50.000 0.00 0.00 0.00 2.59
3052 3665 1.947456 GCAATTTCCCCGATGTACTCC 59.053 52.381 0.00 0.00 0.00 3.85
3053 3666 2.572290 CAATTTCCCCGATGTACTCCC 58.428 52.381 0.00 0.00 0.00 4.30
3054 3667 2.172717 CAATTTCCCCGATGTACTCCCT 59.827 50.000 0.00 0.00 0.00 4.20
3055 3668 1.492764 TTTCCCCGATGTACTCCCTC 58.507 55.000 0.00 0.00 0.00 4.30
3056 3669 0.398098 TTCCCCGATGTACTCCCTCC 60.398 60.000 0.00 0.00 0.00 4.30
3057 3670 2.201022 CCCCGATGTACTCCCTCCG 61.201 68.421 0.00 0.00 0.00 4.63
3058 3671 1.455217 CCCGATGTACTCCCTCCGT 60.455 63.158 0.00 0.00 0.00 4.69
3059 3672 1.041447 CCCGATGTACTCCCTCCGTT 61.041 60.000 0.00 0.00 0.00 4.44
3060 3673 0.822164 CCGATGTACTCCCTCCGTTT 59.178 55.000 0.00 0.00 0.00 3.60
3061 3674 1.202382 CCGATGTACTCCCTCCGTTTC 60.202 57.143 0.00 0.00 0.00 2.78
3062 3675 1.749634 CGATGTACTCCCTCCGTTTCT 59.250 52.381 0.00 0.00 0.00 2.52
3063 3676 2.947652 CGATGTACTCCCTCCGTTTCTA 59.052 50.000 0.00 0.00 0.00 2.10
3064 3677 3.379372 CGATGTACTCCCTCCGTTTCTAA 59.621 47.826 0.00 0.00 0.00 2.10
3065 3678 4.142315 CGATGTACTCCCTCCGTTTCTAAA 60.142 45.833 0.00 0.00 0.00 1.85
3066 3679 5.451520 CGATGTACTCCCTCCGTTTCTAAAT 60.452 44.000 0.00 0.00 0.00 1.40
3067 3680 6.238842 CGATGTACTCCCTCCGTTTCTAAATA 60.239 42.308 0.00 0.00 0.00 1.40
3068 3681 7.523380 CGATGTACTCCCTCCGTTTCTAAATAT 60.523 40.741 0.00 0.00 0.00 1.28
3069 3682 8.716674 ATGTACTCCCTCCGTTTCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
3070 3683 8.537728 TGTACTCCCTCCGTTTCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
3071 3684 8.636213 TGTACTCCCTCCGTTTCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
3072 3685 6.522946 ACTCCCTCCGTTTCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
3073 3686 6.326843 ACTCCCTCCGTTTCTAAATATAAGCT 59.673 38.462 0.00 0.00 0.00 3.74
3074 3687 7.133133 TCCCTCCGTTTCTAAATATAAGCTT 57.867 36.000 3.48 3.48 0.00 3.74
3075 3688 7.571025 TCCCTCCGTTTCTAAATATAAGCTTT 58.429 34.615 3.20 0.00 0.00 3.51
3076 3689 8.050930 TCCCTCCGTTTCTAAATATAAGCTTTT 58.949 33.333 3.20 0.00 0.00 2.27
3077 3690 8.683615 CCCTCCGTTTCTAAATATAAGCTTTTT 58.316 33.333 3.20 1.60 0.00 1.94
3212 3825 6.945636 TTTAGAAATGGAGGGAGTACTTCA 57.054 37.500 2.92 0.00 0.00 3.02
3213 3826 6.546428 TTAGAAATGGAGGGAGTACTTCAG 57.454 41.667 2.92 0.00 27.38 3.02
3214 3827 4.430441 AGAAATGGAGGGAGTACTTCAGT 58.570 43.478 2.92 0.00 27.38 3.41
3215 3828 4.223923 AGAAATGGAGGGAGTACTTCAGTG 59.776 45.833 2.92 0.00 27.38 3.66
3216 3829 1.267121 TGGAGGGAGTACTTCAGTGC 58.733 55.000 2.92 0.00 0.00 4.40
3217 3830 0.537653 GGAGGGAGTACTTCAGTGCC 59.462 60.000 2.92 0.00 38.36 5.01
3218 3831 1.267121 GAGGGAGTACTTCAGTGCCA 58.733 55.000 2.92 0.00 40.53 4.92
3219 3832 1.205893 GAGGGAGTACTTCAGTGCCAG 59.794 57.143 2.92 0.00 40.53 4.85
3220 3833 1.203187 AGGGAGTACTTCAGTGCCAGA 60.203 52.381 2.92 0.00 40.53 3.86
3221 3834 1.834263 GGGAGTACTTCAGTGCCAGAT 59.166 52.381 2.92 0.00 37.98 2.90
3222 3835 3.031736 GGGAGTACTTCAGTGCCAGATA 58.968 50.000 2.92 0.00 37.98 1.98
3223 3836 3.068873 GGGAGTACTTCAGTGCCAGATAG 59.931 52.174 2.92 0.00 37.98 2.08
3224 3837 3.491792 GGAGTACTTCAGTGCCAGATAGC 60.492 52.174 0.00 0.00 0.00 2.97
3225 3838 3.099905 AGTACTTCAGTGCCAGATAGCA 58.900 45.455 0.00 0.00 41.46 3.49
3235 3848 2.424601 TGCCAGATAGCACAATGAAAGC 59.575 45.455 0.00 0.00 38.00 3.51
3236 3849 2.424601 GCCAGATAGCACAATGAAAGCA 59.575 45.455 0.00 0.00 0.00 3.91
3237 3850 3.488721 GCCAGATAGCACAATGAAAGCAG 60.489 47.826 0.00 0.00 0.00 4.24
3238 3851 3.943381 CCAGATAGCACAATGAAAGCAGA 59.057 43.478 0.00 0.00 0.00 4.26
3239 3852 4.579340 CCAGATAGCACAATGAAAGCAGAT 59.421 41.667 0.00 0.00 0.00 2.90
3240 3853 5.067413 CCAGATAGCACAATGAAAGCAGATT 59.933 40.000 0.00 0.00 0.00 2.40
3241 3854 6.200100 CAGATAGCACAATGAAAGCAGATTC 58.800 40.000 0.00 0.00 0.00 2.52
3242 3855 3.482722 AGCACAATGAAAGCAGATTCG 57.517 42.857 0.00 0.00 31.80 3.34
3243 3856 3.076621 AGCACAATGAAAGCAGATTCGA 58.923 40.909 0.00 0.00 31.80 3.71
3244 3857 3.126514 AGCACAATGAAAGCAGATTCGAG 59.873 43.478 0.00 0.00 31.80 4.04
3245 3858 3.120060 GCACAATGAAAGCAGATTCGAGT 60.120 43.478 0.00 0.00 31.80 4.18
3246 3859 4.093408 GCACAATGAAAGCAGATTCGAGTA 59.907 41.667 0.00 0.00 31.80 2.59
3247 3860 5.554636 CACAATGAAAGCAGATTCGAGTAC 58.445 41.667 0.00 0.00 31.80 2.73
3248 3861 4.631813 ACAATGAAAGCAGATTCGAGTACC 59.368 41.667 0.00 0.00 31.80 3.34
3249 3862 2.876091 TGAAAGCAGATTCGAGTACCG 58.124 47.619 0.00 0.00 40.25 4.02
3250 3863 2.194271 GAAAGCAGATTCGAGTACCGG 58.806 52.381 0.00 0.00 39.14 5.28
3251 3864 1.471119 AAGCAGATTCGAGTACCGGA 58.529 50.000 9.46 0.00 39.14 5.14
3252 3865 1.693627 AGCAGATTCGAGTACCGGAT 58.306 50.000 9.46 0.00 39.69 4.18
3253 3866 2.032620 AGCAGATTCGAGTACCGGATT 58.967 47.619 9.46 0.00 36.42 3.01
3254 3867 3.220110 AGCAGATTCGAGTACCGGATTA 58.780 45.455 9.46 0.00 36.42 1.75
3255 3868 3.827302 AGCAGATTCGAGTACCGGATTAT 59.173 43.478 9.46 0.00 36.42 1.28
3256 3869 3.921021 GCAGATTCGAGTACCGGATTATG 59.079 47.826 9.46 0.00 36.42 1.90
3257 3870 4.486090 CAGATTCGAGTACCGGATTATGG 58.514 47.826 9.46 0.00 36.42 2.74
3258 3871 2.806608 TTCGAGTACCGGATTATGGC 57.193 50.000 9.46 0.00 39.14 4.40
3259 3872 1.991121 TCGAGTACCGGATTATGGCT 58.009 50.000 9.46 0.00 39.14 4.75
3260 3873 1.611977 TCGAGTACCGGATTATGGCTG 59.388 52.381 9.46 0.00 39.14 4.85
3261 3874 1.611977 CGAGTACCGGATTATGGCTGA 59.388 52.381 9.46 0.00 33.91 4.26
3262 3875 2.231478 CGAGTACCGGATTATGGCTGAT 59.769 50.000 9.46 0.00 33.91 2.90
3263 3876 3.306088 CGAGTACCGGATTATGGCTGATT 60.306 47.826 9.46 0.00 33.91 2.57
3264 3877 4.246458 GAGTACCGGATTATGGCTGATTC 58.754 47.826 9.46 0.00 0.00 2.52
3265 3878 3.646162 AGTACCGGATTATGGCTGATTCA 59.354 43.478 9.46 0.00 0.00 2.57
3266 3879 3.795688 ACCGGATTATGGCTGATTCAT 57.204 42.857 9.46 0.00 0.00 2.57
3267 3880 4.908601 ACCGGATTATGGCTGATTCATA 57.091 40.909 9.46 0.00 0.00 2.15
3268 3881 4.579869 ACCGGATTATGGCTGATTCATAC 58.420 43.478 9.46 0.00 0.00 2.39
3269 3882 4.041567 ACCGGATTATGGCTGATTCATACA 59.958 41.667 9.46 0.00 0.00 2.29
3270 3883 5.188434 CCGGATTATGGCTGATTCATACAT 58.812 41.667 0.00 7.92 0.00 2.29
3271 3884 5.065602 CCGGATTATGGCTGATTCATACATG 59.934 44.000 0.00 0.00 0.00 3.21
3272 3885 5.448225 CGGATTATGGCTGATTCATACATGC 60.448 44.000 11.40 1.10 0.00 4.06
3273 3886 5.651139 GGATTATGGCTGATTCATACATGCT 59.349 40.000 11.40 2.11 0.00 3.79
3274 3887 6.825213 GGATTATGGCTGATTCATACATGCTA 59.175 38.462 11.40 0.00 0.00 3.49
3275 3888 7.201679 GGATTATGGCTGATTCATACATGCTAC 60.202 40.741 11.40 0.19 0.00 3.58
3276 3889 3.392882 TGGCTGATTCATACATGCTACG 58.607 45.455 0.00 0.00 0.00 3.51
3277 3890 2.738846 GGCTGATTCATACATGCTACGG 59.261 50.000 0.00 0.00 0.00 4.02
3278 3891 2.738846 GCTGATTCATACATGCTACGGG 59.261 50.000 0.00 0.00 0.00 5.28
3279 3892 3.803715 GCTGATTCATACATGCTACGGGT 60.804 47.826 0.00 0.00 0.00 5.28
3280 3893 4.380531 CTGATTCATACATGCTACGGGTT 58.619 43.478 0.00 0.00 0.00 4.11
3281 3894 4.126437 TGATTCATACATGCTACGGGTTG 58.874 43.478 0.00 0.00 0.00 3.77
3282 3895 2.613026 TCATACATGCTACGGGTTGG 57.387 50.000 0.00 0.00 0.00 3.77
3283 3896 2.112190 TCATACATGCTACGGGTTGGA 58.888 47.619 0.00 0.00 0.00 3.53
3284 3897 2.502130 TCATACATGCTACGGGTTGGAA 59.498 45.455 0.00 0.00 0.00 3.53
3285 3898 3.135712 TCATACATGCTACGGGTTGGAAT 59.864 43.478 0.00 0.00 0.00 3.01
3286 3899 1.750193 ACATGCTACGGGTTGGAATG 58.250 50.000 0.00 0.00 0.00 2.67
3287 3900 1.280710 ACATGCTACGGGTTGGAATGA 59.719 47.619 0.00 0.00 0.00 2.57
3288 3901 2.290641 ACATGCTACGGGTTGGAATGAA 60.291 45.455 0.00 0.00 0.00 2.57
3289 3902 2.570415 TGCTACGGGTTGGAATGAAA 57.430 45.000 0.00 0.00 0.00 2.69
3290 3903 2.865079 TGCTACGGGTTGGAATGAAAA 58.135 42.857 0.00 0.00 0.00 2.29
3291 3904 3.223435 TGCTACGGGTTGGAATGAAAAA 58.777 40.909 0.00 0.00 0.00 1.94
3292 3905 3.004944 TGCTACGGGTTGGAATGAAAAAC 59.995 43.478 0.00 0.00 0.00 2.43
3293 3906 3.613193 GCTACGGGTTGGAATGAAAAACC 60.613 47.826 0.00 0.00 42.21 3.27
3296 3909 3.021269 GGGTTGGAATGAAAAACCGTC 57.979 47.619 0.00 0.00 43.58 4.79
3297 3910 2.362717 GGGTTGGAATGAAAAACCGTCA 59.637 45.455 0.00 0.00 43.58 4.35
3298 3911 3.006430 GGGTTGGAATGAAAAACCGTCAT 59.994 43.478 0.00 0.00 43.58 3.06
3299 3912 4.218852 GGGTTGGAATGAAAAACCGTCATA 59.781 41.667 0.00 0.00 43.58 2.15
3300 3913 5.105513 GGGTTGGAATGAAAAACCGTCATAT 60.106 40.000 0.00 0.00 43.58 1.78
3301 3914 6.095720 GGGTTGGAATGAAAAACCGTCATATA 59.904 38.462 0.00 0.00 43.58 0.86
3302 3915 6.970613 GGTTGGAATGAAAAACCGTCATATAC 59.029 38.462 0.00 0.00 34.60 1.47
3303 3916 6.687081 TGGAATGAAAAACCGTCATATACC 57.313 37.500 0.00 0.00 34.60 2.73
3304 3917 6.181190 TGGAATGAAAAACCGTCATATACCA 58.819 36.000 0.00 0.00 34.60 3.25
3305 3918 6.094325 TGGAATGAAAAACCGTCATATACCAC 59.906 38.462 0.00 0.00 34.60 4.16
3306 3919 5.728351 ATGAAAAACCGTCATATACCACG 57.272 39.130 0.00 0.00 33.91 4.94
3307 3920 4.567971 TGAAAAACCGTCATATACCACGT 58.432 39.130 4.95 0.00 34.06 4.49
3308 3921 5.718146 TGAAAAACCGTCATATACCACGTA 58.282 37.500 0.00 0.00 34.06 3.57
3309 3922 6.339730 TGAAAAACCGTCATATACCACGTAT 58.660 36.000 0.00 0.00 34.06 3.06
3310 3923 7.487484 TGAAAAACCGTCATATACCACGTATA 58.513 34.615 0.00 0.00 35.77 1.47
3311 3924 7.648908 TGAAAAACCGTCATATACCACGTATAG 59.351 37.037 0.00 0.00 34.96 1.31
3312 3925 5.633830 AACCGTCATATACCACGTATAGG 57.366 43.478 0.00 0.00 34.96 2.57
3313 3926 4.910195 ACCGTCATATACCACGTATAGGA 58.090 43.478 0.00 2.86 38.76 2.94
3314 3927 4.940046 ACCGTCATATACCACGTATAGGAG 59.060 45.833 6.45 0.75 40.69 3.69
3315 3928 4.334759 CCGTCATATACCACGTATAGGAGG 59.665 50.000 14.52 14.52 40.69 4.30
3316 3929 5.181009 CGTCATATACCACGTATAGGAGGA 58.819 45.833 14.73 0.91 43.73 3.71
3317 3930 5.645067 CGTCATATACCACGTATAGGAGGAA 59.355 44.000 14.73 1.98 43.73 3.36
3318 3931 6.318144 CGTCATATACCACGTATAGGAGGAAT 59.682 42.308 14.73 3.92 43.73 3.01
3319 3932 7.496920 CGTCATATACCACGTATAGGAGGAATA 59.503 40.741 14.73 0.00 43.73 1.75
3320 3933 9.352191 GTCATATACCACGTATAGGAGGAATAT 57.648 37.037 14.73 6.59 40.69 1.28
3397 4010 9.612620 CTTATACACTTTCTTTTTGCGAGAAAT 57.387 29.630 0.35 0.00 41.00 2.17
3442 4056 4.642437 TCATGGCAGTACAAAGAACAACAA 59.358 37.500 0.00 0.00 0.00 2.83
3488 4102 0.755698 ATGGACCACCTAGCGACGAT 60.756 55.000 0.00 0.00 37.04 3.73
3571 4185 5.365619 CGGGCAAACCTTATTGTAGTAGAT 58.634 41.667 0.00 0.00 36.97 1.98
3577 4191 7.919621 GCAAACCTTATTGTAGTAGATAGTCGT 59.080 37.037 0.00 0.00 32.80 4.34
3588 4202 3.489180 AGATAGTCGTGAAGTTGTCGG 57.511 47.619 0.00 0.00 0.00 4.79
3591 4205 2.029964 TCGTGAAGTTGTCGGGCC 59.970 61.111 0.00 0.00 0.00 5.80
3707 4328 1.186200 TGAACAGAGACCGGATCCAG 58.814 55.000 9.46 2.18 0.00 3.86
3712 4333 2.166829 CAGAGACCGGATCCAGATAGG 58.833 57.143 9.46 6.83 39.47 2.57
3752 4373 0.758734 ATCGAATCCCGCAAGATCCA 59.241 50.000 0.00 0.00 43.02 3.41
3820 4443 1.101331 GGGACGGAGATAGAACGTGT 58.899 55.000 0.00 0.00 41.40 4.49
3875 4499 1.152777 CACAGCCCCAACCAAGACA 60.153 57.895 0.00 0.00 0.00 3.41
3879 4503 1.903404 GCCCCAACCAAGACACTGG 60.903 63.158 0.00 0.00 42.68 4.00
3969 4596 0.870313 AGAGGCCATAGGAGATGGGA 59.130 55.000 5.01 0.00 39.53 4.37
3970 4597 0.980423 GAGGCCATAGGAGATGGGAC 59.020 60.000 5.01 0.00 39.53 4.46
3972 4599 1.674057 GCCATAGGAGATGGGACGG 59.326 63.158 5.76 0.00 39.53 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 37 1.141881 CAGCGTCCGAGTAGGCAAT 59.858 57.895 0.00 0.00 40.77 3.56
107 111 4.292178 GAGATCAGCGAGGGCCCG 62.292 72.222 18.44 6.58 41.24 6.13
127 131 2.659610 GCTGTCGCTTGGAGGACT 59.340 61.111 0.00 0.00 34.31 3.85
131 135 2.743928 GTGGGCTGTCGCTTGGAG 60.744 66.667 0.00 0.00 36.09 3.86
281 286 2.675423 AGGTAGACCGCGCTGACA 60.675 61.111 5.61 0.00 42.08 3.58
402 407 1.921475 CAAACTGTTGCGTCGTCGA 59.079 52.632 6.17 0.00 39.71 4.20
448 454 2.094182 CGAAACTCCTCGAAGATGGGAA 60.094 50.000 0.00 0.00 41.44 3.97
546 569 2.840651 CAACTAGAAGGTGGGTCAGGAT 59.159 50.000 0.00 0.00 0.00 3.24
547 570 2.257207 CAACTAGAAGGTGGGTCAGGA 58.743 52.381 0.00 0.00 0.00 3.86
560 583 8.304596 CCTCAACTTCAACTATACACAACTAGA 58.695 37.037 0.00 0.00 0.00 2.43
579 602 1.002544 GAGTACAAGCAGGCCTCAACT 59.997 52.381 0.00 0.00 0.00 3.16
670 695 4.804139 CCTATCACGGACACACTATTTGTC 59.196 45.833 0.00 0.00 42.35 3.18
671 696 4.382685 CCCTATCACGGACACACTATTTGT 60.383 45.833 0.00 0.00 39.97 2.83
672 697 4.119862 CCCTATCACGGACACACTATTTG 58.880 47.826 0.00 0.00 0.00 2.32
673 698 4.028131 TCCCTATCACGGACACACTATTT 58.972 43.478 0.00 0.00 0.00 1.40
674 699 3.638860 TCCCTATCACGGACACACTATT 58.361 45.455 0.00 0.00 0.00 1.73
675 700 3.308035 TCCCTATCACGGACACACTAT 57.692 47.619 0.00 0.00 0.00 2.12
676 701 2.812836 TCCCTATCACGGACACACTA 57.187 50.000 0.00 0.00 0.00 2.74
677 702 3.683885 TCCCTATCACGGACACACT 57.316 52.632 0.00 0.00 0.00 3.55
685 710 1.876714 CAACGCCGTCCCTATCACG 60.877 63.158 0.00 0.00 36.99 4.35
686 711 1.520787 CCAACGCCGTCCCTATCAC 60.521 63.158 0.00 0.00 0.00 3.06
687 712 2.727392 CCCAACGCCGTCCCTATCA 61.727 63.158 0.00 0.00 0.00 2.15
688 713 2.108362 CCCAACGCCGTCCCTATC 59.892 66.667 0.00 0.00 0.00 2.08
689 714 2.364579 TCCCAACGCCGTCCCTAT 60.365 61.111 0.00 0.00 0.00 2.57
690 715 3.384532 GTCCCAACGCCGTCCCTA 61.385 66.667 0.00 0.00 0.00 3.53
700 725 3.063045 GGATTTGATTACGTCGTCCCAAC 59.937 47.826 0.00 0.00 0.00 3.77
701 726 3.264104 GGATTTGATTACGTCGTCCCAA 58.736 45.455 0.00 1.98 0.00 4.12
702 727 2.234168 TGGATTTGATTACGTCGTCCCA 59.766 45.455 0.00 0.00 0.00 4.37
703 728 2.896168 TGGATTTGATTACGTCGTCCC 58.104 47.619 0.00 0.00 0.00 4.46
704 729 5.694910 ACATATGGATTTGATTACGTCGTCC 59.305 40.000 0.00 0.00 0.00 4.79
705 730 6.764877 ACATATGGATTTGATTACGTCGTC 57.235 37.500 0.00 0.00 0.00 4.20
706 731 7.654568 TCTACATATGGATTTGATTACGTCGT 58.345 34.615 7.80 2.21 0.00 4.34
707 732 8.689251 ATCTACATATGGATTTGATTACGTCG 57.311 34.615 7.80 0.00 0.00 5.12
714 739 9.155975 GCGAAACTATCTACATATGGATTTGAT 57.844 33.333 7.80 0.60 0.00 2.57
715 740 7.602644 GGCGAAACTATCTACATATGGATTTGA 59.397 37.037 7.80 0.00 0.00 2.69
716 741 7.604164 AGGCGAAACTATCTACATATGGATTTG 59.396 37.037 7.80 0.00 0.00 2.32
717 742 7.680730 AGGCGAAACTATCTACATATGGATTT 58.319 34.615 7.80 0.00 0.00 2.17
718 743 7.246171 AGGCGAAACTATCTACATATGGATT 57.754 36.000 7.80 0.00 0.00 3.01
719 744 6.859112 AGGCGAAACTATCTACATATGGAT 57.141 37.500 7.80 3.82 0.00 3.41
720 745 6.665992 AAGGCGAAACTATCTACATATGGA 57.334 37.500 7.80 0.00 0.00 3.41
721 746 7.730364 AAAAGGCGAAACTATCTACATATGG 57.270 36.000 7.80 0.00 0.00 2.74
723 748 9.355215 CGATAAAAGGCGAAACTATCTACATAT 57.645 33.333 0.00 0.00 0.00 1.78
724 749 8.570488 TCGATAAAAGGCGAAACTATCTACATA 58.430 33.333 0.00 0.00 33.04 2.29
725 750 7.431249 TCGATAAAAGGCGAAACTATCTACAT 58.569 34.615 0.00 0.00 33.04 2.29
726 751 6.798482 TCGATAAAAGGCGAAACTATCTACA 58.202 36.000 0.00 0.00 33.04 2.74
727 752 7.096147 CCTTCGATAAAAGGCGAAACTATCTAC 60.096 40.741 0.00 0.00 44.65 2.59
728 753 6.921857 CCTTCGATAAAAGGCGAAACTATCTA 59.078 38.462 0.00 0.00 44.65 1.98
729 754 5.753921 CCTTCGATAAAAGGCGAAACTATCT 59.246 40.000 0.00 0.00 44.65 1.98
730 755 5.751990 TCCTTCGATAAAAGGCGAAACTATC 59.248 40.000 0.00 0.00 44.65 2.08
731 756 5.667466 TCCTTCGATAAAAGGCGAAACTAT 58.333 37.500 0.00 0.00 44.65 2.12
732 757 5.075858 TCCTTCGATAAAAGGCGAAACTA 57.924 39.130 0.00 0.00 44.65 2.24
733 758 3.934068 TCCTTCGATAAAAGGCGAAACT 58.066 40.909 0.00 0.00 44.65 2.66
734 759 4.673534 TTCCTTCGATAAAAGGCGAAAC 57.326 40.909 0.00 0.00 44.65 2.78
735 760 5.692613 TTTTCCTTCGATAAAAGGCGAAA 57.307 34.783 0.00 0.00 44.65 3.46
736 761 5.413213 TGATTTTCCTTCGATAAAAGGCGAA 59.587 36.000 0.00 0.00 44.66 4.70
737 762 4.938832 TGATTTTCCTTCGATAAAAGGCGA 59.061 37.500 0.00 0.00 44.66 5.54
738 763 5.229921 TGATTTTCCTTCGATAAAAGGCG 57.770 39.130 0.00 0.00 44.66 5.52
739 764 7.032377 AGATGATTTTCCTTCGATAAAAGGC 57.968 36.000 0.00 0.00 44.66 4.35
740 765 9.508567 GAAAGATGATTTTCCTTCGATAAAAGG 57.491 33.333 0.00 0.00 46.11 3.11
742 767 9.840427 GTGAAAGATGATTTTCCTTCGATAAAA 57.160 29.630 0.00 0.00 36.46 1.52
743 768 8.175069 CGTGAAAGATGATTTTCCTTCGATAAA 58.825 33.333 0.00 0.00 36.46 1.40
744 769 7.201609 CCGTGAAAGATGATTTTCCTTCGATAA 60.202 37.037 0.00 0.00 36.46 1.75
745 770 6.257849 CCGTGAAAGATGATTTTCCTTCGATA 59.742 38.462 0.00 0.00 36.46 2.92
746 771 5.065218 CCGTGAAAGATGATTTTCCTTCGAT 59.935 40.000 0.00 0.00 36.46 3.59
747 772 4.391830 CCGTGAAAGATGATTTTCCTTCGA 59.608 41.667 0.00 0.00 36.46 3.71
748 773 4.651994 CCGTGAAAGATGATTTTCCTTCG 58.348 43.478 0.00 0.00 36.46 3.79
749 774 4.415735 GCCGTGAAAGATGATTTTCCTTC 58.584 43.478 0.00 0.00 36.46 3.46
750 775 3.119849 CGCCGTGAAAGATGATTTTCCTT 60.120 43.478 0.00 0.00 36.46 3.36
751 776 2.420022 CGCCGTGAAAGATGATTTTCCT 59.580 45.455 0.00 0.00 36.46 3.36
752 777 2.477863 CCGCCGTGAAAGATGATTTTCC 60.478 50.000 0.00 0.00 36.46 3.13
753 778 2.477863 CCCGCCGTGAAAGATGATTTTC 60.478 50.000 0.00 0.00 37.53 2.29
799 824 6.748658 CACACGTACGGTAAATTCTATTCTGA 59.251 38.462 21.06 0.00 0.00 3.27
916 951 1.990060 CGCCCAGGAAAGAGAGGGA 60.990 63.158 0.00 0.00 44.30 4.20
947 982 2.534042 TGGAGGAGACGGAGAAAGAT 57.466 50.000 0.00 0.00 0.00 2.40
957 992 2.028020 AGTCGGTTGATTTGGAGGAGAC 60.028 50.000 0.00 0.00 0.00 3.36
984 1020 2.976882 ACTGGTAATGGTGTGTGGTAGT 59.023 45.455 0.00 0.00 0.00 2.73
1033 1076 4.056125 TCAGGACAGAGCACCGCG 62.056 66.667 0.00 0.00 0.00 6.46
1037 1080 0.801251 GCAATGTCAGGACAGAGCAC 59.199 55.000 18.25 1.24 45.48 4.40
1068 1111 0.804364 TAGCAAACGCAATGCAGAGG 59.196 50.000 5.91 0.00 46.22 3.69
1082 1130 1.692411 TCGAGGATAGCTGCTAGCAA 58.308 50.000 24.39 4.18 45.56 3.91
1208 1256 2.649331 ACATTACCGAACCTCACTCG 57.351 50.000 0.00 0.00 36.06 4.18
1216 1264 1.600485 CCCGCCATTACATTACCGAAC 59.400 52.381 0.00 0.00 0.00 3.95
1224 1272 2.078665 AGCTCCCCCGCCATTACAT 61.079 57.895 0.00 0.00 0.00 2.29
1563 1611 2.561885 CCGTCGAGCGTGAACTCT 59.438 61.111 0.00 0.00 39.32 3.24
1866 1941 2.114670 CGGGCACGCCATCTTGAAT 61.115 57.895 10.83 0.00 37.98 2.57
2076 2512 7.028926 TCATACGGAAGACACTAATCTCTTC 57.971 40.000 0.00 0.00 41.15 2.87
2089 2525 8.188139 GCTTTTCCATTTTAATCATACGGAAGA 58.812 33.333 0.00 0.00 32.94 2.87
2114 2551 4.497300 GATCTGCAGATCTCTTCCTATGC 58.503 47.826 38.16 16.39 45.60 3.14
2144 2581 5.240403 GCTGCTAAGCTAAAATATCTTGCCT 59.760 40.000 0.00 0.00 46.60 4.75
2421 3028 1.153369 CGTCATCCCTGGCATCGTT 60.153 57.895 0.00 0.00 0.00 3.85
2430 3037 1.590147 GTCCGTGAACGTCATCCCT 59.410 57.895 1.75 0.00 37.74 4.20
2698 3305 0.246360 TCGCACCGATCAATCAGTGT 59.754 50.000 7.88 0.00 37.49 3.55
2716 3323 1.153353 TCTTTTCACCCGAACGCATC 58.847 50.000 0.00 0.00 0.00 3.91
2720 3327 2.223377 CCTCTTTCTTTTCACCCGAACG 59.777 50.000 0.00 0.00 0.00 3.95
2723 3330 2.051692 TCCCTCTTTCTTTTCACCCGA 58.948 47.619 0.00 0.00 0.00 5.14
2741 3348 7.060421 TCCAAATCTAATCCTACAACCAATCC 58.940 38.462 0.00 0.00 0.00 3.01
2811 3419 5.733620 TTAACCAACAATCTCCTACGAGT 57.266 39.130 0.00 0.00 37.40 4.18
2812 3420 6.090898 CAGTTTAACCAACAATCTCCTACGAG 59.909 42.308 0.00 0.00 37.93 4.18
2813 3421 5.929992 CAGTTTAACCAACAATCTCCTACGA 59.070 40.000 0.00 0.00 37.93 3.43
2814 3422 5.929992 TCAGTTTAACCAACAATCTCCTACG 59.070 40.000 0.00 0.00 37.93 3.51
2898 3509 0.179097 GTTCTCTCGGTCAGGGATGC 60.179 60.000 0.00 0.00 28.67 3.91
2906 3517 2.182030 CCCTGCGTTCTCTCGGTC 59.818 66.667 0.00 0.00 0.00 4.79
2914 3525 0.733150 GCCTAAATGTCCCTGCGTTC 59.267 55.000 0.00 0.00 0.00 3.95
2927 3538 3.018149 ACTGAAACAAACACCGCCTAAA 58.982 40.909 0.00 0.00 0.00 1.85
2949 3561 0.461961 GAATCTGGTCCCCGAGACTG 59.538 60.000 5.67 0.91 45.54 3.51
2950 3562 0.041238 TGAATCTGGTCCCCGAGACT 59.959 55.000 5.67 0.00 45.54 3.24
2951 3563 0.461961 CTGAATCTGGTCCCCGAGAC 59.538 60.000 0.00 0.00 45.51 3.36
2952 3564 1.330655 GCTGAATCTGGTCCCCGAGA 61.331 60.000 0.00 0.00 0.00 4.04
2953 3565 1.144936 GCTGAATCTGGTCCCCGAG 59.855 63.158 0.00 0.00 0.00 4.63
2954 3566 2.367202 GGCTGAATCTGGTCCCCGA 61.367 63.158 0.00 0.00 0.00 5.14
2955 3567 1.915078 AAGGCTGAATCTGGTCCCCG 61.915 60.000 0.00 0.00 0.00 5.73
2956 3568 0.332972 AAAGGCTGAATCTGGTCCCC 59.667 55.000 0.00 0.00 0.00 4.81
2957 3569 1.821136 CAAAAGGCTGAATCTGGTCCC 59.179 52.381 0.00 0.00 0.00 4.46
2967 3579 3.932089 GCAGTTTTGTTTCAAAAGGCTGA 59.068 39.130 19.77 0.00 31.32 4.26
2977 3589 5.034152 TGATTCGAACAGCAGTTTTGTTTC 58.966 37.500 0.00 0.00 38.78 2.78
2978 3590 4.992688 TGATTCGAACAGCAGTTTTGTTT 58.007 34.783 0.00 0.00 38.78 2.83
2991 3604 6.399354 GCTGATTTTTCAAAGCTGATTCGAAC 60.399 38.462 0.00 0.00 32.82 3.95
3042 3655 1.749634 AGAAACGGAGGGAGTACATCG 59.250 52.381 0.00 0.00 0.00 3.84
3044 3657 5.952347 ATTTAGAAACGGAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
3045 3658 8.537728 TTATATTTAGAAACGGAGGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
3046 3659 7.598118 GCTTATATTTAGAAACGGAGGGAGTAC 59.402 40.741 0.00 0.00 0.00 2.73
3047 3660 7.508296 AGCTTATATTTAGAAACGGAGGGAGTA 59.492 37.037 0.00 0.00 0.00 2.59
3048 3661 6.326843 AGCTTATATTTAGAAACGGAGGGAGT 59.673 38.462 0.00 0.00 0.00 3.85
3049 3662 6.760291 AGCTTATATTTAGAAACGGAGGGAG 58.240 40.000 0.00 0.00 0.00 4.30
3050 3663 6.742559 AGCTTATATTTAGAAACGGAGGGA 57.257 37.500 0.00 0.00 0.00 4.20
3051 3664 7.803279 AAAGCTTATATTTAGAAACGGAGGG 57.197 36.000 0.00 0.00 0.00 4.30
3186 3799 9.225682 TGAAGTACTCCCTCCATTTCTAAATAT 57.774 33.333 0.00 0.00 0.00 1.28
3187 3800 8.618240 TGAAGTACTCCCTCCATTTCTAAATA 57.382 34.615 0.00 0.00 0.00 1.40
3188 3801 7.182930 ACTGAAGTACTCCCTCCATTTCTAAAT 59.817 37.037 0.00 0.00 0.00 1.40
3189 3802 6.500751 ACTGAAGTACTCCCTCCATTTCTAAA 59.499 38.462 0.00 0.00 0.00 1.85
3190 3803 6.023603 ACTGAAGTACTCCCTCCATTTCTAA 58.976 40.000 0.00 0.00 0.00 2.10
3191 3804 5.422331 CACTGAAGTACTCCCTCCATTTCTA 59.578 44.000 0.00 0.00 0.00 2.10
3192 3805 4.223923 CACTGAAGTACTCCCTCCATTTCT 59.776 45.833 0.00 0.00 0.00 2.52
3193 3806 4.508662 CACTGAAGTACTCCCTCCATTTC 58.491 47.826 0.00 0.00 0.00 2.17
3194 3807 3.307762 GCACTGAAGTACTCCCTCCATTT 60.308 47.826 0.00 0.00 0.00 2.32
3195 3808 2.237392 GCACTGAAGTACTCCCTCCATT 59.763 50.000 0.00 0.00 0.00 3.16
3196 3809 1.834263 GCACTGAAGTACTCCCTCCAT 59.166 52.381 0.00 0.00 0.00 3.41
3197 3810 1.267121 GCACTGAAGTACTCCCTCCA 58.733 55.000 0.00 0.00 0.00 3.86
3198 3811 0.537653 GGCACTGAAGTACTCCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
3199 3812 1.205893 CTGGCACTGAAGTACTCCCTC 59.794 57.143 0.00 0.00 0.00 4.30
3200 3813 1.203187 TCTGGCACTGAAGTACTCCCT 60.203 52.381 0.00 0.00 32.07 4.20
3201 3814 1.267121 TCTGGCACTGAAGTACTCCC 58.733 55.000 0.00 0.00 32.07 4.30
3202 3815 3.491792 GCTATCTGGCACTGAAGTACTCC 60.492 52.174 0.00 0.00 40.32 3.85
3203 3816 3.131223 TGCTATCTGGCACTGAAGTACTC 59.869 47.826 0.00 0.00 40.32 2.59
3204 3817 3.099905 TGCTATCTGGCACTGAAGTACT 58.900 45.455 0.00 0.00 40.32 2.73
3205 3818 3.526931 TGCTATCTGGCACTGAAGTAC 57.473 47.619 0.00 0.00 40.32 2.73
3214 3827 2.424601 GCTTTCATTGTGCTATCTGGCA 59.575 45.455 0.00 0.00 40.15 4.92
3215 3828 2.424601 TGCTTTCATTGTGCTATCTGGC 59.575 45.455 0.00 0.00 0.00 4.85
3216 3829 3.943381 TCTGCTTTCATTGTGCTATCTGG 59.057 43.478 0.00 0.00 0.00 3.86
3217 3830 5.752892 ATCTGCTTTCATTGTGCTATCTG 57.247 39.130 0.00 0.00 0.00 2.90
3218 3831 5.007430 CGAATCTGCTTTCATTGTGCTATCT 59.993 40.000 0.00 0.00 0.00 1.98
3219 3832 5.007039 TCGAATCTGCTTTCATTGTGCTATC 59.993 40.000 0.00 0.00 0.00 2.08
3220 3833 4.877823 TCGAATCTGCTTTCATTGTGCTAT 59.122 37.500 0.00 0.00 0.00 2.97
3221 3834 4.252878 TCGAATCTGCTTTCATTGTGCTA 58.747 39.130 0.00 0.00 0.00 3.49
3222 3835 3.076621 TCGAATCTGCTTTCATTGTGCT 58.923 40.909 0.00 0.00 0.00 4.40
3223 3836 3.120060 ACTCGAATCTGCTTTCATTGTGC 60.120 43.478 0.00 0.00 0.00 4.57
3224 3837 4.675190 ACTCGAATCTGCTTTCATTGTG 57.325 40.909 0.00 0.00 0.00 3.33
3225 3838 4.631813 GGTACTCGAATCTGCTTTCATTGT 59.368 41.667 0.00 0.00 0.00 2.71
3226 3839 4.259970 CGGTACTCGAATCTGCTTTCATTG 60.260 45.833 0.00 0.00 42.43 2.82
3227 3840 3.865745 CGGTACTCGAATCTGCTTTCATT 59.134 43.478 0.00 0.00 42.43 2.57
3228 3841 3.448686 CGGTACTCGAATCTGCTTTCAT 58.551 45.455 0.00 0.00 42.43 2.57
3229 3842 2.416836 CCGGTACTCGAATCTGCTTTCA 60.417 50.000 0.00 0.00 42.43 2.69
3230 3843 2.159282 TCCGGTACTCGAATCTGCTTTC 60.159 50.000 0.00 0.00 42.43 2.62
3231 3844 1.822990 TCCGGTACTCGAATCTGCTTT 59.177 47.619 0.00 0.00 42.43 3.51
3232 3845 1.471119 TCCGGTACTCGAATCTGCTT 58.529 50.000 0.00 0.00 42.43 3.91
3233 3846 1.693627 ATCCGGTACTCGAATCTGCT 58.306 50.000 0.00 0.00 42.43 4.24
3234 3847 2.510768 AATCCGGTACTCGAATCTGC 57.489 50.000 0.00 0.00 42.43 4.26
3235 3848 4.486090 CCATAATCCGGTACTCGAATCTG 58.514 47.826 0.00 0.00 42.43 2.90
3236 3849 3.056749 GCCATAATCCGGTACTCGAATCT 60.057 47.826 0.00 0.00 42.43 2.40
3237 3850 3.056749 AGCCATAATCCGGTACTCGAATC 60.057 47.826 0.00 0.00 42.43 2.52
3238 3851 2.897969 AGCCATAATCCGGTACTCGAAT 59.102 45.455 0.00 0.00 42.43 3.34
3239 3852 2.035449 CAGCCATAATCCGGTACTCGAA 59.965 50.000 0.00 0.00 42.43 3.71
3240 3853 1.611977 CAGCCATAATCCGGTACTCGA 59.388 52.381 0.00 0.00 42.43 4.04
3241 3854 1.611977 TCAGCCATAATCCGGTACTCG 59.388 52.381 0.00 0.00 38.88 4.18
3242 3855 3.963428 ATCAGCCATAATCCGGTACTC 57.037 47.619 0.00 0.00 0.00 2.59
3243 3856 3.646162 TGAATCAGCCATAATCCGGTACT 59.354 43.478 0.00 0.00 0.00 2.73
3244 3857 4.002906 TGAATCAGCCATAATCCGGTAC 57.997 45.455 0.00 0.00 0.00 3.34
3245 3858 4.908601 ATGAATCAGCCATAATCCGGTA 57.091 40.909 0.00 0.00 0.00 4.02
3246 3859 3.795688 ATGAATCAGCCATAATCCGGT 57.204 42.857 0.00 0.00 0.00 5.28
3247 3860 4.578871 TGTATGAATCAGCCATAATCCGG 58.421 43.478 0.00 0.00 0.00 5.14
3248 3861 5.448225 GCATGTATGAATCAGCCATAATCCG 60.448 44.000 0.00 0.00 0.00 4.18
3249 3862 5.651139 AGCATGTATGAATCAGCCATAATCC 59.349 40.000 0.00 0.00 0.00 3.01
3250 3863 6.754702 AGCATGTATGAATCAGCCATAATC 57.245 37.500 0.00 0.00 0.00 1.75
3251 3864 6.314648 CGTAGCATGTATGAATCAGCCATAAT 59.685 38.462 0.00 0.00 0.00 1.28
3252 3865 5.639082 CGTAGCATGTATGAATCAGCCATAA 59.361 40.000 0.00 0.00 0.00 1.90
3253 3866 5.170748 CGTAGCATGTATGAATCAGCCATA 58.829 41.667 0.00 0.00 0.00 2.74
3254 3867 3.999001 CGTAGCATGTATGAATCAGCCAT 59.001 43.478 0.00 0.00 0.00 4.40
3255 3868 3.392882 CGTAGCATGTATGAATCAGCCA 58.607 45.455 0.00 0.00 0.00 4.75
3256 3869 2.738846 CCGTAGCATGTATGAATCAGCC 59.261 50.000 0.00 0.00 0.00 4.85
3257 3870 2.738846 CCCGTAGCATGTATGAATCAGC 59.261 50.000 0.00 0.00 0.00 4.26
3258 3871 3.995199 ACCCGTAGCATGTATGAATCAG 58.005 45.455 0.00 0.00 0.00 2.90
3259 3872 4.126437 CAACCCGTAGCATGTATGAATCA 58.874 43.478 0.00 0.00 0.00 2.57
3260 3873 3.498397 CCAACCCGTAGCATGTATGAATC 59.502 47.826 0.00 0.00 0.00 2.52
3261 3874 3.135712 TCCAACCCGTAGCATGTATGAAT 59.864 43.478 0.00 0.00 0.00 2.57
3262 3875 2.502130 TCCAACCCGTAGCATGTATGAA 59.498 45.455 0.00 0.00 0.00 2.57
3263 3876 2.112190 TCCAACCCGTAGCATGTATGA 58.888 47.619 0.00 0.00 0.00 2.15
3264 3877 2.613026 TCCAACCCGTAGCATGTATG 57.387 50.000 0.00 0.00 0.00 2.39
3265 3878 3.135712 TCATTCCAACCCGTAGCATGTAT 59.864 43.478 0.00 0.00 0.00 2.29
3266 3879 2.502130 TCATTCCAACCCGTAGCATGTA 59.498 45.455 0.00 0.00 0.00 2.29
3267 3880 1.280710 TCATTCCAACCCGTAGCATGT 59.719 47.619 0.00 0.00 0.00 3.21
3268 3881 2.036958 TCATTCCAACCCGTAGCATG 57.963 50.000 0.00 0.00 0.00 4.06
3269 3882 2.799126 TTCATTCCAACCCGTAGCAT 57.201 45.000 0.00 0.00 0.00 3.79
3270 3883 2.570415 TTTCATTCCAACCCGTAGCA 57.430 45.000 0.00 0.00 0.00 3.49
3271 3884 3.571571 GTTTTTCATTCCAACCCGTAGC 58.428 45.455 0.00 0.00 0.00 3.58
3272 3885 3.365565 CGGTTTTTCATTCCAACCCGTAG 60.366 47.826 0.00 0.00 37.28 3.51
3273 3886 2.553172 CGGTTTTTCATTCCAACCCGTA 59.447 45.455 0.00 0.00 37.28 4.02
3274 3887 1.338655 CGGTTTTTCATTCCAACCCGT 59.661 47.619 0.00 0.00 37.28 5.28
3275 3888 1.338655 ACGGTTTTTCATTCCAACCCG 59.661 47.619 0.00 0.00 37.28 5.28
3276 3889 2.362717 TGACGGTTTTTCATTCCAACCC 59.637 45.455 0.00 0.00 37.28 4.11
3277 3890 3.719173 TGACGGTTTTTCATTCCAACC 57.281 42.857 0.00 0.00 37.24 3.77
3278 3891 6.970613 GGTATATGACGGTTTTTCATTCCAAC 59.029 38.462 0.00 0.00 35.31 3.77
3279 3892 6.659668 TGGTATATGACGGTTTTTCATTCCAA 59.340 34.615 0.00 0.00 35.31 3.53
3280 3893 6.094325 GTGGTATATGACGGTTTTTCATTCCA 59.906 38.462 0.00 0.00 35.31 3.53
3281 3894 6.492254 GTGGTATATGACGGTTTTTCATTCC 58.508 40.000 0.00 0.00 35.31 3.01
3282 3895 6.183360 ACGTGGTATATGACGGTTTTTCATTC 60.183 38.462 10.24 0.00 39.94 2.67
3283 3896 5.644636 ACGTGGTATATGACGGTTTTTCATT 59.355 36.000 10.24 0.00 39.94 2.57
3284 3897 5.180271 ACGTGGTATATGACGGTTTTTCAT 58.820 37.500 10.24 0.00 39.94 2.57
3285 3898 4.567971 ACGTGGTATATGACGGTTTTTCA 58.432 39.130 10.24 0.00 39.94 2.69
3286 3899 6.833342 ATACGTGGTATATGACGGTTTTTC 57.167 37.500 0.00 0.00 39.94 2.29
3287 3900 6.925165 CCTATACGTGGTATATGACGGTTTTT 59.075 38.462 0.00 0.00 39.94 1.94
3288 3901 6.265196 TCCTATACGTGGTATATGACGGTTTT 59.735 38.462 0.00 0.00 39.94 2.43
3289 3902 5.769662 TCCTATACGTGGTATATGACGGTTT 59.230 40.000 0.00 0.04 39.94 3.27
3290 3903 5.316167 TCCTATACGTGGTATATGACGGTT 58.684 41.667 0.00 1.91 39.94 4.44
3291 3904 4.910195 TCCTATACGTGGTATATGACGGT 58.090 43.478 0.00 0.00 39.94 4.83
3292 3905 4.334759 CCTCCTATACGTGGTATATGACGG 59.665 50.000 0.00 0.00 39.94 4.79
3293 3906 5.181009 TCCTCCTATACGTGGTATATGACG 58.819 45.833 0.00 5.26 41.41 4.35
3294 3907 7.642082 ATTCCTCCTATACGTGGTATATGAC 57.358 40.000 0.00 0.00 31.68 3.06
3368 3981 9.431887 TCTCGCAAAAAGAAAGTGTATAAGTAT 57.568 29.630 0.00 0.00 0.00 2.12
3369 3982 8.821147 TCTCGCAAAAAGAAAGTGTATAAGTA 57.179 30.769 0.00 0.00 0.00 2.24
3370 3983 7.724305 TCTCGCAAAAAGAAAGTGTATAAGT 57.276 32.000 0.00 0.00 0.00 2.24
3371 3984 9.612620 ATTTCTCGCAAAAAGAAAGTGTATAAG 57.387 29.630 4.80 0.00 43.78 1.73
3372 3985 9.959749 AATTTCTCGCAAAAAGAAAGTGTATAA 57.040 25.926 4.80 0.00 43.78 0.98
3373 3986 9.959749 AAATTTCTCGCAAAAAGAAAGTGTATA 57.040 25.926 4.80 0.00 43.78 1.47
3374 3987 8.871686 AAATTTCTCGCAAAAAGAAAGTGTAT 57.128 26.923 4.80 0.00 43.78 2.29
3375 3988 7.434013 GGAAATTTCTCGCAAAAAGAAAGTGTA 59.566 33.333 17.42 0.00 43.78 2.90
3376 3989 6.255670 GGAAATTTCTCGCAAAAAGAAAGTGT 59.744 34.615 17.42 0.00 43.78 3.55
3377 3990 6.255453 TGGAAATTTCTCGCAAAAAGAAAGTG 59.745 34.615 17.42 0.00 43.78 3.16
3378 3991 6.337356 TGGAAATTTCTCGCAAAAAGAAAGT 58.663 32.000 17.42 0.00 43.78 2.66
3379 3992 6.826893 TGGAAATTTCTCGCAAAAAGAAAG 57.173 33.333 17.42 0.00 43.78 2.62
3488 4102 0.670546 GCTCGCTCCAGTGCTTGTAA 60.671 55.000 0.00 0.00 0.00 2.41
3571 4185 0.038892 GCCCGACAACTTCACGACTA 60.039 55.000 0.00 0.00 0.00 2.59
3577 4191 1.228124 CCTTGGCCCGACAACTTCA 60.228 57.895 0.00 0.00 0.00 3.02
3605 4223 2.579201 CTACTCTGGTGCGGTGGG 59.421 66.667 0.00 0.00 0.00 4.61
3609 4229 1.741770 GGTTGCTACTCTGGTGCGG 60.742 63.158 0.00 0.00 0.00 5.69
3712 4333 3.998672 TGCGGGTCTTCGGTGGAC 61.999 66.667 0.00 0.00 0.00 4.02
3726 4347 3.030308 CGGGATTCGATCGGTGCG 61.030 66.667 16.41 3.39 42.43 5.34
3820 4443 7.130099 TGTCCCTTAGTAGGAATAATGTCTCA 58.870 38.462 0.00 0.00 45.05 3.27
3875 4499 2.891580 TCTCGTTCTTGTTAGAGCCAGT 59.108 45.455 0.00 0.00 0.00 4.00
3879 4503 2.662156 CCGTTCTCGTTCTTGTTAGAGC 59.338 50.000 0.00 0.00 35.01 4.09
3959 4584 2.442272 CGGTCCGTCCCATCTCCT 60.442 66.667 2.08 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.