Multiple sequence alignment - TraesCS2D01G188600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G188600 chr2D 100.000 4605 0 0 1 4605 131645128 131640524 0.000000e+00 8504.0
1 TraesCS2D01G188600 chr2D 83.267 502 64 14 2192 2685 462240284 462240773 1.180000e-120 444.0
2 TraesCS2D01G188600 chr2D 81.424 323 46 7 1558 1879 462229213 462229522 7.650000e-63 252.0
3 TraesCS2D01G188600 chr2D 81.879 298 32 9 1035 1316 462228758 462229049 9.960000e-57 231.0
4 TraesCS2D01G188600 chr2D 90.226 133 11 1 4204 4336 585421276 585421146 6.130000e-39 172.0
5 TraesCS2D01G188600 chr2D 85.211 142 18 1 3451 3592 544790781 544790643 4.800000e-30 143.0
6 TraesCS2D01G188600 chr2D 87.342 79 10 0 1838 1916 462238125 462238203 1.760000e-14 91.6
7 TraesCS2D01G188600 chr2D 81.739 115 16 3 210 320 492516636 492516523 1.760000e-14 91.6
8 TraesCS2D01G188600 chr2A 94.140 2082 76 17 1836 3903 138528043 138525994 0.000000e+00 3127.0
9 TraesCS2D01G188600 chr2A 82.248 1290 183 29 2192 3456 607512970 607514238 0.000000e+00 1072.0
10 TraesCS2D01G188600 chr2A 95.440 614 28 0 1322 1935 138528638 138528025 0.000000e+00 979.0
11 TraesCS2D01G188600 chr2A 89.329 656 37 14 3262 3903 138517766 138517130 0.000000e+00 793.0
12 TraesCS2D01G188600 chr2A 93.860 342 17 1 966 1303 138529046 138528705 3.180000e-141 512.0
13 TraesCS2D01G188600 chr2A 82.322 379 53 7 1558 1935 610176103 610176468 2.670000e-82 316.0
14 TraesCS2D01G188600 chr2A 88.608 237 12 5 3763 3984 138524963 138524727 1.630000e-69 274.0
15 TraesCS2D01G188600 chr2A 94.857 175 7 2 4031 4204 138515478 138515305 5.870000e-69 272.0
16 TraesCS2D01G188600 chr2A 81.994 311 32 9 1025 1319 610175278 610175580 4.600000e-60 243.0
17 TraesCS2D01G188600 chr2A 91.176 136 9 3 3892 4026 138516947 138516814 1.020000e-41 182.0
18 TraesCS2D01G188600 chr2A 92.857 126 8 1 3892 4017 138525810 138525686 1.020000e-41 182.0
19 TraesCS2D01G188600 chr2A 92.727 55 4 0 3705 3759 748958325 748958271 3.820000e-11 80.5
20 TraesCS2D01G188600 chr2B 95.387 1474 54 7 1994 3462 186403065 186404529 0.000000e+00 2333.0
21 TraesCS2D01G188600 chr2B 95.900 1317 41 8 2138 3453 185762361 185761057 0.000000e+00 2121.0
22 TraesCS2D01G188600 chr2B 82.171 1290 185 32 2192 3456 545152686 545153955 0.000000e+00 1066.0
23 TraesCS2D01G188600 chr2B 95.114 614 30 0 1322 1935 185763300 185762687 0.000000e+00 968.0
24 TraesCS2D01G188600 chr2B 95.027 563 25 1 1319 1881 186402510 186403069 0.000000e+00 881.0
25 TraesCS2D01G188600 chr2B 97.159 352 10 0 1836 2187 185762705 185762354 3.070000e-166 595.0
26 TraesCS2D01G188600 chr2B 94.366 355 16 2 966 1319 185763951 185763600 4.050000e-150 542.0
27 TraesCS2D01G188600 chr2B 90.529 359 16 5 966 1319 186401871 186402216 4.200000e-125 459.0
28 TraesCS2D01G188600 chr2B 82.392 301 32 10 1035 1320 545151051 545151345 4.600000e-60 243.0
29 TraesCS2D01G188600 chr2B 86.192 239 11 5 3761 3984 185760463 185760232 5.950000e-59 239.0
30 TraesCS2D01G188600 chr2B 82.819 227 30 5 3454 3671 550846776 550847002 1.310000e-45 195.0
31 TraesCS2D01G188600 chr2B 77.188 377 55 12 1336 1686 545151641 545152012 1.690000e-44 191.0
32 TraesCS2D01G188600 chr2B 90.226 133 12 1 4204 4336 165390098 165390229 6.130000e-39 172.0
33 TraesCS2D01G188600 chr2B 84.298 121 19 0 1815 1935 545152021 545152141 8.090000e-23 119.0
34 TraesCS2D01G188600 chr2B 93.878 49 3 0 918 966 707978830 707978782 1.780000e-09 75.0
35 TraesCS2D01G188600 chr6B 89.846 975 44 17 12 965 69447851 69446911 0.000000e+00 1201.0
36 TraesCS2D01G188600 chr6B 89.525 611 43 11 359 969 687128864 687128275 0.000000e+00 754.0
37 TraesCS2D01G188600 chr6B 92.308 468 35 1 501 968 518382107 518381641 0.000000e+00 664.0
38 TraesCS2D01G188600 chr6B 89.019 428 39 6 81 506 518384100 518383679 1.470000e-144 523.0
39 TraesCS2D01G188600 chr6B 88.554 166 15 3 3506 3671 687189636 687189475 1.010000e-46 198.0
40 TraesCS2D01G188600 chr6B 92.500 80 6 0 12 91 687128957 687128878 1.050000e-21 115.0
41 TraesCS2D01G188600 chr7B 88.855 978 53 22 12 967 707527899 707528842 0.000000e+00 1151.0
42 TraesCS2D01G188600 chr7B 90.909 132 11 1 4205 4336 577277407 577277277 4.740000e-40 176.0
43 TraesCS2D01G188600 chr7B 89.831 59 6 0 3700 3758 54476504 54476562 4.940000e-10 76.8
44 TraesCS2D01G188600 chr1D 89.294 906 61 13 63 945 487351937 487352829 0.000000e+00 1103.0
45 TraesCS2D01G188600 chr1D 92.727 55 4 0 3705 3759 402364729 402364675 3.820000e-11 80.5
46 TraesCS2D01G188600 chr3A 87.300 1000 48 24 12 966 565531733 565532698 0.000000e+00 1070.0
47 TraesCS2D01G188600 chr3A 77.632 228 34 9 3454 3668 197438370 197438593 6.260000e-24 122.0
48 TraesCS2D01G188600 chr6D 88.525 915 61 20 81 969 16855300 16856196 0.000000e+00 1068.0
49 TraesCS2D01G188600 chr6D 92.593 54 4 0 3706 3759 400551336 400551283 1.370000e-10 78.7
50 TraesCS2D01G188600 chr1B 83.240 1068 157 16 2401 3456 275672417 275673474 0.000000e+00 961.0
51 TraesCS2D01G188600 chr1B 83.130 1067 160 14 2401 3456 275458841 275459898 0.000000e+00 955.0
52 TraesCS2D01G188600 chr1B 83.037 1067 160 15 2401 3456 275553796 275554852 0.000000e+00 948.0
53 TraesCS2D01G188600 chr1B 82.943 1067 162 13 2401 3456 275358851 275359908 0.000000e+00 944.0
54 TraesCS2D01G188600 chr1B 81.509 676 73 29 80 712 557465886 557465220 4.110000e-140 508.0
55 TraesCS2D01G188600 chr1B 81.928 249 34 9 711 957 557465019 557464780 2.810000e-47 200.0
56 TraesCS2D01G188600 chr1B 89.796 147 14 1 3525 3671 510795333 510795478 2.190000e-43 187.0
57 TraesCS2D01G188600 chr1B 85.882 170 22 2 1151 1319 275552270 275552438 3.660000e-41 180.0
58 TraesCS2D01G188600 chr1B 85.882 170 22 2 1151 1319 275670526 275670694 3.660000e-41 180.0
59 TraesCS2D01G188600 chr1B 80.930 215 34 5 3459 3671 352132481 352132272 3.690000e-36 163.0
60 TraesCS2D01G188600 chr1B 89.600 125 12 1 588 712 152515382 152515259 1.720000e-34 158.0
61 TraesCS2D01G188600 chr1B 79.828 233 29 10 3452 3671 419401041 419400814 2.220000e-33 154.0
62 TraesCS2D01G188600 chr1B 81.203 133 25 0 2191 2323 275358680 275358812 1.750000e-19 108.0
63 TraesCS2D01G188600 chr1B 81.203 133 25 0 2191 2323 275458670 275458802 1.750000e-19 108.0
64 TraesCS2D01G188600 chr1B 80.451 133 26 0 2191 2323 275553625 275553757 8.150000e-18 102.0
65 TraesCS2D01G188600 chr1A 82.512 1075 159 21 2400 3459 246128832 246127772 0.000000e+00 917.0
66 TraesCS2D01G188600 chr1A 80.449 312 40 12 1026 1319 246130513 246130205 7.760000e-53 219.0
67 TraesCS2D01G188600 chrUn 81.250 672 83 22 77 723 85632556 85633209 1.910000e-138 503.0
68 TraesCS2D01G188600 chr5A 88.716 257 26 2 4350 4605 677959371 677959625 1.240000e-80 311.0
69 TraesCS2D01G188600 chr5A 83.628 226 27 4 3455 3671 678929168 678928944 2.170000e-48 204.0
70 TraesCS2D01G188600 chr5A 90.972 144 10 3 4207 4348 677959187 677959329 1.690000e-44 191.0
71 TraesCS2D01G188600 chr5A 91.729 133 10 1 4204 4336 522984618 522984749 2.830000e-42 183.0
72 TraesCS2D01G188600 chr3D 81.395 258 33 9 3455 3698 354278697 354278441 3.630000e-46 196.0
73 TraesCS2D01G188600 chr3D 85.897 78 10 1 3699 3776 5415004 5415080 1.060000e-11 82.4
74 TraesCS2D01G188600 chr3D 92.727 55 3 1 3705 3759 310694340 310694287 1.370000e-10 78.7
75 TraesCS2D01G188600 chr5B 90.977 133 11 1 4204 4336 606865693 606865562 1.320000e-40 178.0
76 TraesCS2D01G188600 chr5B 90.226 133 13 0 4204 4336 271902662 271902794 1.700000e-39 174.0
77 TraesCS2D01G188600 chr5D 90.909 132 10 2 4205 4336 44487774 44487645 4.740000e-40 176.0
78 TraesCS2D01G188600 chr5D 79.668 241 36 10 4372 4605 29643485 29643251 1.330000e-35 161.0
79 TraesCS2D01G188600 chr5D 87.037 54 5 2 916 968 8494905 8494957 4.980000e-05 60.2
80 TraesCS2D01G188600 chr3B 90.152 132 12 1 4205 4336 52708574 52708444 2.200000e-38 171.0
81 TraesCS2D01G188600 chr3B 81.951 205 30 5 3470 3671 729707791 729707591 2.850000e-37 167.0
82 TraesCS2D01G188600 chr7A 81.675 191 32 3 191 379 290628921 290628732 6.170000e-34 156.0
83 TraesCS2D01G188600 chr4D 93.333 60 4 0 3700 3759 360488038 360488097 6.350000e-14 89.8
84 TraesCS2D01G188600 chr4D 79.592 98 11 8 873 965 497148815 497148722 1.380000e-05 62.1
85 TraesCS2D01G188600 chr4B 93.750 48 3 0 918 965 507171752 507171799 6.390000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G188600 chr2D 131640524 131645128 4604 True 8504.000000 8504 100.000000 1 4605 1 chr2D.!!$R1 4604
1 TraesCS2D01G188600 chr2D 462238125 462240773 2648 False 267.800000 444 85.304500 1838 2685 2 chr2D.!!$F2 847
2 TraesCS2D01G188600 chr2D 462228758 462229522 764 False 241.500000 252 81.651500 1035 1879 2 chr2D.!!$F1 844
3 TraesCS2D01G188600 chr2A 607512970 607514238 1268 False 1072.000000 1072 82.248000 2192 3456 1 chr2A.!!$F1 1264
4 TraesCS2D01G188600 chr2A 138524727 138529046 4319 True 1014.800000 3127 92.981000 966 4017 5 chr2A.!!$R3 3051
5 TraesCS2D01G188600 chr2A 138515305 138517766 2461 True 415.666667 793 91.787333 3262 4204 3 chr2A.!!$R2 942
6 TraesCS2D01G188600 chr2A 610175278 610176468 1190 False 279.500000 316 82.158000 1025 1935 2 chr2A.!!$F2 910
7 TraesCS2D01G188600 chr2B 186401871 186404529 2658 False 1224.333333 2333 93.647667 966 3462 3 chr2B.!!$F3 2496
8 TraesCS2D01G188600 chr2B 185760232 185763951 3719 True 893.000000 2121 93.746200 966 3984 5 chr2B.!!$R2 3018
9 TraesCS2D01G188600 chr2B 545151051 545153955 2904 False 404.750000 1066 81.512250 1035 3456 4 chr2B.!!$F4 2421
10 TraesCS2D01G188600 chr6B 69446911 69447851 940 True 1201.000000 1201 89.846000 12 965 1 chr6B.!!$R1 953
11 TraesCS2D01G188600 chr6B 518381641 518384100 2459 True 593.500000 664 90.663500 81 968 2 chr6B.!!$R3 887
12 TraesCS2D01G188600 chr6B 687128275 687128957 682 True 434.500000 754 91.012500 12 969 2 chr6B.!!$R4 957
13 TraesCS2D01G188600 chr7B 707527899 707528842 943 False 1151.000000 1151 88.855000 12 967 1 chr7B.!!$F2 955
14 TraesCS2D01G188600 chr1D 487351937 487352829 892 False 1103.000000 1103 89.294000 63 945 1 chr1D.!!$F1 882
15 TraesCS2D01G188600 chr3A 565531733 565532698 965 False 1070.000000 1070 87.300000 12 966 1 chr3A.!!$F2 954
16 TraesCS2D01G188600 chr6D 16855300 16856196 896 False 1068.000000 1068 88.525000 81 969 1 chr6D.!!$F1 888
17 TraesCS2D01G188600 chr1B 275670526 275673474 2948 False 570.500000 961 84.561000 1151 3456 2 chr1B.!!$F5 2305
18 TraesCS2D01G188600 chr1B 275458670 275459898 1228 False 531.500000 955 82.166500 2191 3456 2 chr1B.!!$F3 1265
19 TraesCS2D01G188600 chr1B 275358680 275359908 1228 False 526.000000 944 82.073000 2191 3456 2 chr1B.!!$F2 1265
20 TraesCS2D01G188600 chr1B 275552270 275554852 2582 False 410.000000 948 83.123333 1151 3456 3 chr1B.!!$F4 2305
21 TraesCS2D01G188600 chr1B 557464780 557465886 1106 True 354.000000 508 81.718500 80 957 2 chr1B.!!$R4 877
22 TraesCS2D01G188600 chr1A 246127772 246130513 2741 True 568.000000 917 81.480500 1026 3459 2 chr1A.!!$R1 2433
23 TraesCS2D01G188600 chrUn 85632556 85633209 653 False 503.000000 503 81.250000 77 723 1 chrUn.!!$F1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 2844 0.039527 GCGCTGACCGGTTCAAATTT 60.040 50.0 9.42 0.0 37.44 1.82 F
938 2848 0.318275 TGACCGGTTCAAATTTGCGC 60.318 50.0 9.42 0.0 0.00 6.09 F
1023 2933 0.323957 ACCCTAAGTTTGGCGGAGAC 59.676 55.0 0.00 0.0 0.00 3.36 F
1222 3155 1.106285 GATTGCATCCCTGGTGAACC 58.894 55.0 0.00 0.0 0.00 3.62 F
2917 7521 1.284657 AGCATTGATCAGTCGCTTCG 58.715 50.0 9.16 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 6517 0.267356 CATCTTCCCCTCCTCCTCCT 59.733 60.000 0.0 0.0 0.00 3.69 R
2823 7427 0.322456 TGTCCACAGCCACAATAGCC 60.322 55.000 0.0 0.0 0.00 3.93 R
2826 7430 3.153369 ACATTGTCCACAGCCACAATA 57.847 42.857 0.0 0.0 40.52 1.90 R
3021 7625 4.142578 ACACAGACACTCAAGATAGTAGCG 60.143 45.833 0.0 0.0 0.00 4.26 R
4570 11954 0.093026 GTGAAAATCAGCGTCGTCCG 59.907 55.000 0.0 0.0 40.40 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.196997 TAGTCGCCATGGCCAAGCTT 62.197 55.000 30.79 12.80 37.98 3.74
46 47 2.418197 CCATGGCCAAGCTTCAATCAAG 60.418 50.000 10.96 0.00 34.85 3.02
203 227 5.774690 ACCTCTATTGATTTTTGCTGGAACA 59.225 36.000 0.00 0.00 0.00 3.18
446 481 6.017192 GCTGGAACCAACAATTATTTTTGCTT 60.017 34.615 0.00 0.00 0.00 3.91
506 566 9.620259 TTATTTATTGTTTTTGCTGGAACCTTT 57.380 25.926 0.00 0.00 0.00 3.11
617 2284 7.112452 AGATTACTGGAGTTTTTGTTTTGCT 57.888 32.000 0.00 0.00 0.00 3.91
625 2292 5.341993 GGAGTTTTTGTTTTGCTTTTGTTGC 59.658 36.000 0.00 0.00 0.00 4.17
804 2699 2.125391 GCTGCATGAGTGAGGCGA 60.125 61.111 0.00 0.00 32.52 5.54
865 2775 7.270779 CACATGATGTATCAGAGAAGAAAGGA 58.729 38.462 0.00 0.00 40.64 3.36
870 2780 8.256605 TGATGTATCAGAGAAGAAAGGAGAAAG 58.743 37.037 0.00 0.00 32.11 2.62
904 2814 6.170506 TCTGACGGTACAAAGAATTGCTATT 58.829 36.000 0.00 0.00 40.34 1.73
906 2816 5.935206 TGACGGTACAAAGAATTGCTATTGA 59.065 36.000 0.00 0.00 40.34 2.57
907 2817 6.428465 TGACGGTACAAAGAATTGCTATTGAA 59.572 34.615 0.00 0.00 40.34 2.69
908 2818 6.608610 ACGGTACAAAGAATTGCTATTGAAC 58.391 36.000 0.00 0.00 40.34 3.18
909 2819 5.732647 CGGTACAAAGAATTGCTATTGAACG 59.267 40.000 0.00 0.00 40.34 3.95
910 2820 6.027749 GGTACAAAGAATTGCTATTGAACGG 58.972 40.000 0.00 0.00 40.34 4.44
911 2821 5.059404 ACAAAGAATTGCTATTGAACGGG 57.941 39.130 0.00 0.00 40.34 5.28
912 2822 4.522789 ACAAAGAATTGCTATTGAACGGGT 59.477 37.500 0.00 0.00 40.34 5.28
913 2823 5.708230 ACAAAGAATTGCTATTGAACGGGTA 59.292 36.000 0.00 0.00 40.34 3.69
914 2824 5.813080 AAGAATTGCTATTGAACGGGTAC 57.187 39.130 0.00 0.00 0.00 3.34
915 2825 9.418552 ACAAAGAATTGCTATTGAACGGGTACG 62.419 40.741 0.00 0.00 42.44 3.67
916 2826 1.361793 TTGCTATTGAACGGGTACGC 58.638 50.000 0.00 0.00 46.04 4.42
917 2827 0.802994 TGCTATTGAACGGGTACGCG 60.803 55.000 28.27 28.27 46.04 6.01
918 2828 1.922189 CTATTGAACGGGTACGCGC 59.078 57.895 29.56 16.23 46.04 6.86
919 2829 0.526954 CTATTGAACGGGTACGCGCT 60.527 55.000 29.56 19.81 46.04 5.92
920 2830 0.802994 TATTGAACGGGTACGCGCTG 60.803 55.000 29.56 6.98 46.04 5.18
921 2831 2.495366 ATTGAACGGGTACGCGCTGA 62.495 55.000 29.56 11.58 46.04 4.26
922 2832 3.177249 GAACGGGTACGCGCTGAC 61.177 66.667 29.56 15.44 46.04 3.51
923 2833 4.729856 AACGGGTACGCGCTGACC 62.730 66.667 29.56 16.94 46.04 4.02
927 2837 4.729856 GGTACGCGCTGACCGGTT 62.730 66.667 9.42 0.00 37.44 4.44
928 2838 3.177249 GTACGCGCTGACCGGTTC 61.177 66.667 9.42 2.34 37.44 3.62
929 2839 3.672447 TACGCGCTGACCGGTTCA 61.672 61.111 9.42 7.60 37.44 3.18
930 2840 3.210223 TACGCGCTGACCGGTTCAA 62.210 57.895 9.42 0.00 37.44 2.69
931 2841 2.696409 TACGCGCTGACCGGTTCAAA 62.696 55.000 9.42 0.00 37.44 2.69
932 2842 2.677003 CGCGCTGACCGGTTCAAAT 61.677 57.895 9.42 0.00 37.44 2.32
933 2843 1.579429 GCGCTGACCGGTTCAAATT 59.421 52.632 9.42 0.00 37.44 1.82
934 2844 0.039527 GCGCTGACCGGTTCAAATTT 60.040 50.000 9.42 0.00 37.44 1.82
935 2845 1.685302 CGCTGACCGGTTCAAATTTG 58.315 50.000 9.42 12.15 32.21 2.32
936 2846 1.418373 GCTGACCGGTTCAAATTTGC 58.582 50.000 9.42 4.13 32.21 3.68
937 2847 1.685302 CTGACCGGTTCAAATTTGCG 58.315 50.000 9.42 10.96 32.21 4.85
938 2848 0.318275 TGACCGGTTCAAATTTGCGC 60.318 50.000 9.42 0.00 0.00 6.09
939 2849 1.006688 ACCGGTTCAAATTTGCGCC 60.007 52.632 13.54 15.13 0.00 6.53
940 2850 2.085844 CCGGTTCAAATTTGCGCCG 61.086 57.895 29.62 29.62 41.39 6.46
941 2851 2.085844 CGGTTCAAATTTGCGCCGG 61.086 57.895 29.24 18.37 39.60 6.13
942 2852 2.379634 GGTTCAAATTTGCGCCGGC 61.380 57.895 19.07 19.07 40.52 6.13
943 2853 2.429907 TTCAAATTTGCGCCGGCG 60.430 55.556 43.13 43.13 44.10 6.46
1022 2932 1.061546 AACCCTAAGTTTGGCGGAGA 58.938 50.000 0.00 0.00 33.89 3.71
1023 2933 0.323957 ACCCTAAGTTTGGCGGAGAC 59.676 55.000 0.00 0.00 0.00 3.36
1222 3155 1.106285 GATTGCATCCCTGGTGAACC 58.894 55.000 0.00 0.00 0.00 3.62
1386 3620 1.519234 GTGCGACGAGATGGCATCA 60.519 57.895 27.93 4.45 44.59 3.07
1747 4006 3.664025 TTCGTGGCAGCGGATCCTG 62.664 63.158 10.75 3.13 35.93 3.86
2036 6517 4.478206 AGATGCTCGAATTTGAGGAAGA 57.522 40.909 19.55 0.00 39.87 2.87
2323 6918 5.641209 CCCATTGATTCCTTCTCATCGTATC 59.359 44.000 0.00 0.00 0.00 2.24
2332 6927 4.322349 CCTTCTCATCGTATCCATCTTCCC 60.322 50.000 0.00 0.00 0.00 3.97
2598 7197 2.651455 CACTCTATGTCTACGGGGTCA 58.349 52.381 0.00 0.00 0.00 4.02
2601 7200 3.138653 ACTCTATGTCTACGGGGTCATCT 59.861 47.826 0.00 0.00 0.00 2.90
2865 7469 6.183360 ACAATGTTGACTTCGAAATCCAACTT 60.183 34.615 24.46 19.41 38.25 2.66
2917 7521 1.284657 AGCATTGATCAGTCGCTTCG 58.715 50.000 9.16 0.00 0.00 3.79
2955 7559 6.197842 GTGGTTATCGTGAAGGTTTAGATACG 59.802 42.308 0.00 0.00 0.00 3.06
3021 7625 2.056577 CGACTTACAGAAACCGTCCAC 58.943 52.381 0.00 0.00 0.00 4.02
3247 7860 2.496899 ACTGGGACATAACCTGCAAG 57.503 50.000 0.00 0.00 38.20 4.01
3253 7866 2.488153 GGACATAACCTGCAAGTTGTCC 59.512 50.000 18.91 18.91 36.34 4.02
3404 8021 5.649831 GTCCCAGCTTATCAAGAACAAGATT 59.350 40.000 0.00 0.00 0.00 2.40
3519 8142 1.965219 CGAGAAGGACGACAAGGGT 59.035 57.895 0.00 0.00 0.00 4.34
3521 8144 0.670854 GAGAAGGACGACAAGGGTGC 60.671 60.000 0.00 0.00 0.00 5.01
3522 8145 1.671379 GAAGGACGACAAGGGTGCC 60.671 63.158 0.00 0.00 0.00 5.01
3567 8190 2.050144 TGATCTTCTCCACCATAGCCC 58.950 52.381 0.00 0.00 0.00 5.19
3599 8222 3.916359 TTTTGGTAGTCCGATGGCATA 57.084 42.857 0.00 0.00 36.30 3.14
3600 8223 4.431416 TTTTGGTAGTCCGATGGCATAT 57.569 40.909 0.00 0.00 36.30 1.78
3607 8230 6.211785 TGGTAGTCCGATGGCATATGTTATAA 59.788 38.462 0.00 0.00 36.30 0.98
3612 8235 6.202954 GTCCGATGGCATATGTTATAATAGCC 59.797 42.308 0.00 4.58 40.93 3.93
3623 8246 5.946298 TGTTATAATAGCCGGACGATGTAG 58.054 41.667 5.05 0.00 0.00 2.74
3625 8248 0.039437 AATAGCCGGACGATGTAGCG 60.039 55.000 5.05 0.00 37.29 4.26
3671 8294 7.309621 GGTTTGCATGGATTTGAGATATGCTAT 60.310 37.037 0.00 0.00 43.29 2.97
3672 8295 6.753107 TGCATGGATTTGAGATATGCTATG 57.247 37.500 0.00 0.00 43.29 2.23
3676 8305 3.950395 GGATTTGAGATATGCTATGGCCC 59.050 47.826 0.00 0.00 37.74 5.80
3698 8327 3.674753 CGGTTGTGAGATTGGAAATTTGC 59.325 43.478 2.22 2.22 0.00 3.68
3700 8329 3.574284 TGTGAGATTGGAAATTTGCCG 57.426 42.857 7.27 0.00 0.00 5.69
3703 8332 3.131046 GTGAGATTGGAAATTTGCCGGAT 59.869 43.478 5.05 0.00 0.00 4.18
3735 8364 1.401018 CGTTTGAAGGGTCGGATTTGC 60.401 52.381 0.00 0.00 0.00 3.68
3742 8371 1.313091 GGGTCGGATTTGCCAAGTCC 61.313 60.000 8.84 8.84 35.94 3.85
3763 8392 6.435277 AGTCCGGTTGTAGATACTCTTTACAA 59.565 38.462 0.00 0.00 35.56 2.41
3816 8448 2.159198 CCATATGGGCACTTTGTTGCTC 60.159 50.000 14.52 0.00 43.96 4.26
3862 8498 6.995686 TGGTGTGTTGTACATGATTTTAGAGT 59.004 34.615 0.00 0.00 42.24 3.24
3864 8500 9.162764 GGTGTGTTGTACATGATTTTAGAGTAT 57.837 33.333 0.00 0.00 42.24 2.12
3888 8524 6.011122 AGGCAATACTGAATTTCTCTCCAT 57.989 37.500 0.00 0.00 0.00 3.41
3939 8770 7.730364 ACCTTATCAGCATACCTTAAAATCG 57.270 36.000 0.00 0.00 0.00 3.34
3949 8780 6.347725 GCATACCTTAAAATCGATAGGCACAG 60.348 42.308 11.19 2.14 0.00 3.66
4003 10056 8.918202 ACATACAAGGAAAATCAACTAACTGA 57.082 30.769 0.00 0.00 0.00 3.41
4012 10065 3.469008 TCAACTAACTGACACAGGTGG 57.531 47.619 4.24 0.00 35.74 4.61
4023 10093 0.250038 CACAGGTGGTGGTGACTCAG 60.250 60.000 0.00 0.00 44.04 3.35
4028 10098 1.000955 GGTGGTGGTGACTCAGTACAG 59.999 57.143 0.00 0.00 0.00 2.74
4033 10103 3.057456 GGTGGTGACTCAGTACAGTACAG 60.057 52.174 13.37 5.12 0.00 2.74
4094 11477 1.296392 CGTGACCCATCAGCCAAGA 59.704 57.895 0.00 0.00 34.75 3.02
4128 11511 3.636300 CACCCCTCAAAACAAGACATGAA 59.364 43.478 0.00 0.00 0.00 2.57
4130 11513 3.891366 CCCCTCAAAACAAGACATGAACT 59.109 43.478 0.00 0.00 0.00 3.01
4144 11528 4.037222 ACATGAACTTTCCAAAAAGGGGT 58.963 39.130 0.00 0.00 45.15 4.95
4204 11588 1.218316 GAACCTGTAGCCACGAGGG 59.782 63.158 0.00 0.00 40.85 4.30
4205 11589 1.229082 AACCTGTAGCCACGAGGGA 60.229 57.895 0.00 0.00 40.01 4.20
4206 11590 0.617820 AACCTGTAGCCACGAGGGAT 60.618 55.000 0.00 0.00 40.01 3.85
4207 11591 0.617820 ACCTGTAGCCACGAGGGATT 60.618 55.000 0.00 0.00 40.01 3.01
4208 11592 0.541863 CCTGTAGCCACGAGGGATTT 59.458 55.000 0.00 0.00 40.01 2.17
4209 11593 1.065418 CCTGTAGCCACGAGGGATTTT 60.065 52.381 0.00 0.00 40.01 1.82
4210 11594 2.618045 CCTGTAGCCACGAGGGATTTTT 60.618 50.000 0.00 0.00 40.01 1.94
4227 11611 3.897141 TTTTTGTCCAAAAGGACCACC 57.103 42.857 11.79 0.00 40.83 4.61
4238 11622 2.642171 AGGACCACCTAACCAGATGA 57.358 50.000 0.00 0.00 45.83 2.92
4239 11623 2.915869 AGGACCACCTAACCAGATGAA 58.084 47.619 0.00 0.00 45.83 2.57
4240 11624 3.464828 AGGACCACCTAACCAGATGAAT 58.535 45.455 0.00 0.00 45.83 2.57
4241 11625 3.852578 AGGACCACCTAACCAGATGAATT 59.147 43.478 0.00 0.00 45.83 2.17
4242 11626 3.947834 GGACCACCTAACCAGATGAATTG 59.052 47.826 0.00 0.00 0.00 2.32
4243 11627 4.324254 GGACCACCTAACCAGATGAATTGA 60.324 45.833 0.00 0.00 0.00 2.57
4244 11628 4.589908 ACCACCTAACCAGATGAATTGAC 58.410 43.478 0.00 0.00 0.00 3.18
4245 11629 4.042809 ACCACCTAACCAGATGAATTGACA 59.957 41.667 0.00 0.00 0.00 3.58
4246 11630 5.009631 CCACCTAACCAGATGAATTGACAA 58.990 41.667 0.00 0.00 0.00 3.18
4247 11631 5.476599 CCACCTAACCAGATGAATTGACAAA 59.523 40.000 0.00 0.00 0.00 2.83
4248 11632 6.015519 CCACCTAACCAGATGAATTGACAAAA 60.016 38.462 0.00 0.00 0.00 2.44
4249 11633 7.432869 CACCTAACCAGATGAATTGACAAAAA 58.567 34.615 0.00 0.00 0.00 1.94
4274 11658 9.696917 AAAAGACTATTTGTGGATCAATTTGAC 57.303 29.630 0.15 0.00 35.84 3.18
4275 11659 8.408043 AAGACTATTTGTGGATCAATTTGACA 57.592 30.769 0.15 0.00 35.84 3.58
4276 11660 8.408043 AGACTATTTGTGGATCAATTTGACAA 57.592 30.769 0.15 0.00 35.84 3.18
4277 11661 8.859090 AGACTATTTGTGGATCAATTTGACAAA 58.141 29.630 13.32 13.32 39.95 2.83
4278 11662 9.474920 GACTATTTGTGGATCAATTTGACAAAA 57.525 29.630 14.37 4.18 39.31 2.44
4279 11663 9.829507 ACTATTTGTGGATCAATTTGACAAAAA 57.170 25.926 14.37 10.98 39.31 1.94
4294 11678 3.021451 AAAAAGACCACCTCAGCGG 57.979 52.632 0.00 0.00 39.35 5.52
4330 11714 4.961511 GTGACACGTGGCGCCTGA 62.962 66.667 29.70 4.80 0.00 3.86
4331 11715 4.961511 TGACACGTGGCGCCTGAC 62.962 66.667 29.70 17.80 0.00 3.51
4341 11725 3.942500 CGCCTGACGCCATGATAG 58.057 61.111 0.00 0.00 33.16 2.08
4342 11726 2.313172 CGCCTGACGCCATGATAGC 61.313 63.158 0.00 0.00 33.16 2.97
4343 11727 1.227645 GCCTGACGCCATGATAGCA 60.228 57.895 0.00 0.00 0.00 3.49
4344 11728 1.226686 GCCTGACGCCATGATAGCAG 61.227 60.000 0.00 0.00 0.00 4.24
4345 11729 0.602106 CCTGACGCCATGATAGCAGG 60.602 60.000 0.00 2.20 37.21 4.85
4346 11730 1.226686 CTGACGCCATGATAGCAGGC 61.227 60.000 10.33 10.33 44.89 4.85
4354 11738 3.713288 CCATGATAGCAGGCAAAACATG 58.287 45.455 0.00 0.00 35.11 3.21
4355 11739 3.131577 CCATGATAGCAGGCAAAACATGT 59.868 43.478 0.00 0.00 34.01 3.21
4356 11740 4.382254 CCATGATAGCAGGCAAAACATGTT 60.382 41.667 4.92 4.92 34.01 2.71
4357 11741 4.870123 TGATAGCAGGCAAAACATGTTT 57.130 36.364 18.13 18.13 0.00 2.83
4358 11742 5.212532 TGATAGCAGGCAAAACATGTTTT 57.787 34.783 27.01 27.01 42.91 2.43
4359 11743 5.229423 TGATAGCAGGCAAAACATGTTTTC 58.771 37.500 29.21 22.62 40.45 2.29
4360 11744 2.472816 AGCAGGCAAAACATGTTTTCG 58.527 42.857 29.21 23.91 40.45 3.46
4361 11745 2.159114 AGCAGGCAAAACATGTTTTCGT 60.159 40.909 29.21 21.55 40.45 3.85
4362 11746 2.607180 GCAGGCAAAACATGTTTTCGTT 59.393 40.909 29.21 16.37 40.45 3.85
4363 11747 3.543852 GCAGGCAAAACATGTTTTCGTTG 60.544 43.478 29.21 24.91 40.45 4.10
4364 11748 2.607180 AGGCAAAACATGTTTTCGTTGC 59.393 40.909 29.21 27.76 40.45 4.17
4365 11749 2.286125 GGCAAAACATGTTTTCGTTGCC 60.286 45.455 32.96 32.96 42.10 4.52
4366 11750 2.596343 GCAAAACATGTTTTCGTTGCCG 60.596 45.455 29.21 18.64 40.45 5.69
4367 11751 1.846541 AAACATGTTTTCGTTGCCGG 58.153 45.000 18.13 0.00 33.95 6.13
4368 11752 0.031449 AACATGTTTTCGTTGCCGGG 59.969 50.000 4.92 0.00 33.95 5.73
4369 11753 0.820074 ACATGTTTTCGTTGCCGGGA 60.820 50.000 2.18 0.00 33.95 5.14
4370 11754 0.386731 CATGTTTTCGTTGCCGGGAC 60.387 55.000 2.18 0.00 33.95 4.46
4388 11772 2.825836 GGAACGGGCCAGAGCATG 60.826 66.667 10.86 0.00 42.56 4.06
4389 11773 2.045926 GAACGGGCCAGAGCATGT 60.046 61.111 10.86 0.00 42.56 3.21
4390 11774 2.360350 AACGGGCCAGAGCATGTG 60.360 61.111 10.86 0.00 42.56 3.21
4410 11794 4.858433 CCATGCCGCCATTGCACG 62.858 66.667 0.00 0.00 42.38 5.34
4411 11795 3.813143 CATGCCGCCATTGCACGA 61.813 61.111 0.00 0.00 42.38 4.35
4412 11796 3.511595 ATGCCGCCATTGCACGAG 61.512 61.111 0.00 0.00 42.38 4.18
4430 11814 3.876198 GCGGCCGCCACTATGTTG 61.876 66.667 39.89 0.00 34.56 3.33
4431 11815 3.876198 CGGCCGCCACTATGTTGC 61.876 66.667 14.67 0.00 0.00 4.17
4432 11816 2.438434 GGCCGCCACTATGTTGCT 60.438 61.111 3.91 0.00 0.00 3.91
4433 11817 2.764314 GGCCGCCACTATGTTGCTG 61.764 63.158 3.91 0.00 0.00 4.41
4434 11818 2.793946 CCGCCACTATGTTGCTGC 59.206 61.111 0.00 0.00 0.00 5.25
4435 11819 2.764314 CCGCCACTATGTTGCTGCC 61.764 63.158 0.00 0.00 0.00 4.85
4436 11820 2.793946 GCCACTATGTTGCTGCCG 59.206 61.111 0.00 0.00 0.00 5.69
4437 11821 2.793946 CCACTATGTTGCTGCCGC 59.206 61.111 0.00 0.00 0.00 6.53
4438 11822 2.400798 CACTATGTTGCTGCCGCG 59.599 61.111 0.00 0.00 39.65 6.46
4439 11823 3.499737 ACTATGTTGCTGCCGCGC 61.500 61.111 0.00 0.00 39.65 6.86
4440 11824 4.241999 CTATGTTGCTGCCGCGCC 62.242 66.667 0.00 0.00 39.65 6.53
4441 11825 4.776322 TATGTTGCTGCCGCGCCT 62.776 61.111 0.00 0.00 39.65 5.52
4442 11826 3.378399 TATGTTGCTGCCGCGCCTA 62.378 57.895 0.00 0.00 39.65 3.93
4500 11884 4.758251 CATGCCGCCACTCCACGA 62.758 66.667 0.00 0.00 0.00 4.35
4501 11885 4.457496 ATGCCGCCACTCCACGAG 62.457 66.667 0.00 0.00 35.52 4.18
4507 11891 4.007644 CCACTCCACGAGGCAGCA 62.008 66.667 0.00 0.00 33.35 4.41
4508 11892 2.031012 CACTCCACGAGGCAGCAA 59.969 61.111 0.00 0.00 33.35 3.91
4509 11893 2.031163 ACTCCACGAGGCAGCAAC 59.969 61.111 0.00 0.00 33.35 4.17
4510 11894 3.114616 CTCCACGAGGCAGCAACG 61.115 66.667 8.56 8.56 33.74 4.10
4511 11895 3.573772 CTCCACGAGGCAGCAACGA 62.574 63.158 15.52 0.00 33.74 3.85
4512 11896 2.434884 CCACGAGGCAGCAACGAT 60.435 61.111 15.52 0.21 0.00 3.73
4513 11897 2.743752 CCACGAGGCAGCAACGATG 61.744 63.158 15.52 10.21 0.00 3.84
4514 11898 2.029288 CACGAGGCAGCAACGATGT 61.029 57.895 15.52 0.00 0.00 3.06
4515 11899 1.301716 ACGAGGCAGCAACGATGTT 60.302 52.632 15.52 0.00 0.00 2.71
4516 11900 1.133253 CGAGGCAGCAACGATGTTG 59.867 57.895 5.14 5.14 40.41 3.33
4522 11906 4.141883 GCAACGATGTTGCTGCTG 57.858 55.556 23.34 0.00 41.87 4.41
4523 11907 2.084681 GCAACGATGTTGCTGCTGC 61.085 57.895 23.34 8.89 41.87 5.25
4540 11924 4.088762 CATGCCGCGCGACAACTT 62.089 61.111 34.63 8.44 0.00 2.66
4541 11925 3.353836 ATGCCGCGCGACAACTTT 61.354 55.556 34.63 7.98 0.00 2.66
4542 11926 3.593551 ATGCCGCGCGACAACTTTG 62.594 57.895 34.63 13.18 0.00 2.77
4544 11928 4.012895 CCGCGCGACAACTTTGCT 62.013 61.111 34.63 0.00 31.40 3.91
4545 11929 2.792543 CGCGCGACAACTTTGCTG 60.793 61.111 28.94 0.00 31.40 4.41
4546 11930 2.327940 GCGCGACAACTTTGCTGT 59.672 55.556 12.10 0.00 31.40 4.40
4547 11931 2.005537 GCGCGACAACTTTGCTGTG 61.006 57.895 12.10 0.00 31.40 3.66
4548 11932 1.369209 CGCGACAACTTTGCTGTGG 60.369 57.895 0.00 0.00 31.40 4.17
4549 11933 1.658409 GCGACAACTTTGCTGTGGC 60.658 57.895 0.00 0.00 40.54 5.01
4550 11934 2.335052 GCGACAACTTTGCTGTGGCA 62.335 55.000 5.37 0.00 44.91 4.92
4558 11942 4.662961 TGCTGTGGCAGACGACGG 62.663 66.667 0.00 0.00 44.28 4.79
4559 11943 4.664677 GCTGTGGCAGACGACGGT 62.665 66.667 0.00 0.00 38.54 4.83
4560 11944 2.734723 CTGTGGCAGACGACGGTG 60.735 66.667 0.00 0.00 32.44 4.94
4561 11945 3.207547 CTGTGGCAGACGACGGTGA 62.208 63.158 0.00 0.00 32.44 4.02
4562 11946 2.261671 GTGGCAGACGACGGTGAT 59.738 61.111 0.00 0.00 0.00 3.06
4563 11947 1.374252 GTGGCAGACGACGGTGATT 60.374 57.895 0.00 0.00 0.00 2.57
4564 11948 1.080093 TGGCAGACGACGGTGATTC 60.080 57.895 0.00 0.00 0.00 2.52
4565 11949 1.810030 GGCAGACGACGGTGATTCC 60.810 63.158 0.00 0.00 0.00 3.01
4566 11950 1.810030 GCAGACGACGGTGATTCCC 60.810 63.158 0.00 0.00 0.00 3.97
4567 11951 1.589630 CAGACGACGGTGATTCCCA 59.410 57.895 0.00 0.00 0.00 4.37
4568 11952 0.175760 CAGACGACGGTGATTCCCAT 59.824 55.000 0.00 0.00 0.00 4.00
4569 11953 0.175760 AGACGACGGTGATTCCCATG 59.824 55.000 0.00 0.00 0.00 3.66
4570 11954 1.429148 GACGACGGTGATTCCCATGC 61.429 60.000 0.00 0.00 0.00 4.06
4571 11955 2.525248 CGACGGTGATTCCCATGCG 61.525 63.158 0.00 0.00 0.00 4.73
4572 11956 2.124736 ACGGTGATTCCCATGCGG 60.125 61.111 0.00 0.00 0.00 5.69
4573 11957 2.189257 CGGTGATTCCCATGCGGA 59.811 61.111 0.00 0.00 39.68 5.54
4574 11958 2.180204 CGGTGATTCCCATGCGGAC 61.180 63.158 2.70 0.00 41.83 4.79
4575 11959 2.180204 GGTGATTCCCATGCGGACG 61.180 63.158 2.70 0.00 41.83 4.79
4576 11960 1.153449 GTGATTCCCATGCGGACGA 60.153 57.895 2.70 0.00 41.83 4.20
4577 11961 1.153449 TGATTCCCATGCGGACGAC 60.153 57.895 2.70 0.00 41.83 4.34
4578 11962 2.202878 ATTCCCATGCGGACGACG 60.203 61.111 2.70 0.00 41.83 5.12
4588 11972 2.441023 CGGACGACGCTGATTTTCA 58.559 52.632 0.00 0.00 34.82 2.69
4589 11973 0.093026 CGGACGACGCTGATTTTCAC 59.907 55.000 0.00 0.00 34.82 3.18
4590 11974 0.093026 GGACGACGCTGATTTTCACG 59.907 55.000 0.00 0.00 0.00 4.35
4591 11975 0.093026 GACGACGCTGATTTTCACGG 59.907 55.000 0.00 0.00 0.00 4.94
4592 11976 1.289109 ACGACGCTGATTTTCACGGG 61.289 55.000 0.00 0.00 0.00 5.28
4593 11977 1.134694 GACGCTGATTTTCACGGGC 59.865 57.895 0.00 0.00 0.00 6.13
4594 11978 1.573829 GACGCTGATTTTCACGGGCA 61.574 55.000 0.00 0.00 0.00 5.36
4595 11979 1.135315 CGCTGATTTTCACGGGCAG 59.865 57.895 0.00 0.00 0.00 4.85
4596 11980 1.508088 GCTGATTTTCACGGGCAGG 59.492 57.895 0.00 0.00 0.00 4.85
4597 11981 0.960364 GCTGATTTTCACGGGCAGGA 60.960 55.000 0.00 0.00 0.00 3.86
4598 11982 1.533625 CTGATTTTCACGGGCAGGAA 58.466 50.000 0.00 0.00 0.00 3.36
4599 11983 2.094675 CTGATTTTCACGGGCAGGAAT 58.905 47.619 0.00 0.00 0.00 3.01
4600 11984 2.091541 TGATTTTCACGGGCAGGAATC 58.908 47.619 0.00 0.00 0.00 2.52
4601 11985 1.405463 GATTTTCACGGGCAGGAATCC 59.595 52.381 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.981859 AACGAACCACACAGAACTCT 57.018 45.000 0.00 0.00 0.00 3.24
1 2 3.714391 ACTAACGAACCACACAGAACTC 58.286 45.455 0.00 0.00 0.00 3.01
2 3 3.714391 GACTAACGAACCACACAGAACT 58.286 45.455 0.00 0.00 0.00 3.01
3 4 2.470257 CGACTAACGAACCACACAGAAC 59.530 50.000 0.00 0.00 45.77 3.01
4 5 2.734670 CGACTAACGAACCACACAGAA 58.265 47.619 0.00 0.00 45.77 3.02
6 7 0.782384 GCGACTAACGAACCACACAG 59.218 55.000 0.00 0.00 45.77 3.66
7 8 0.598158 GGCGACTAACGAACCACACA 60.598 55.000 0.00 0.00 45.77 3.72
8 9 0.598158 TGGCGACTAACGAACCACAC 60.598 55.000 0.00 0.00 45.77 3.82
9 10 0.319083 ATGGCGACTAACGAACCACA 59.681 50.000 0.00 0.00 45.77 4.17
10 11 0.719465 CATGGCGACTAACGAACCAC 59.281 55.000 0.00 0.00 45.77 4.16
38 39 0.322366 TCGCCACCATGCTTGATTGA 60.322 50.000 0.22 0.00 0.00 2.57
46 47 2.325082 AAACTCGTCGCCACCATGC 61.325 57.895 0.00 0.00 0.00 4.06
185 209 6.585416 AGAAGTTGTTCCAGCAAAAATCAAT 58.415 32.000 0.00 0.00 32.48 2.57
220 246 5.184711 TGCAGCAAAATCAAAAGAAGGTTT 58.815 33.333 0.00 0.00 0.00 3.27
420 455 5.238214 GCAAAAATAATTGTTGGTTCCAGCA 59.762 36.000 4.34 4.34 32.80 4.41
446 481 3.135348 CCATCTCTTCATAGGCTGGTTGA 59.865 47.826 0.00 0.00 0.00 3.18
625 2292 9.462174 TGCCGATTATAGCAAAAATAAAATCAG 57.538 29.630 0.00 0.00 35.69 2.90
674 2341 2.810852 CTCTCTCTGGTTGGTGCTTTTC 59.189 50.000 0.00 0.00 0.00 2.29
782 2677 2.046988 TCACTCATGCAGCCCACG 60.047 61.111 0.00 0.00 0.00 4.94
865 2775 2.290323 CGTCAGATTTGGTCCCCTTTCT 60.290 50.000 0.00 0.00 0.00 2.52
870 2780 0.906775 TACCGTCAGATTTGGTCCCC 59.093 55.000 0.00 0.00 37.20 4.81
878 2788 5.003804 AGCAATTCTTTGTACCGTCAGATT 58.996 37.500 0.00 0.00 35.17 2.40
904 2814 3.672447 TCAGCGCGTACCCGTTCA 61.672 61.111 8.43 0.00 36.15 3.18
906 2816 4.729856 GGTCAGCGCGTACCCGTT 62.730 66.667 19.90 0.00 36.15 4.44
910 2820 4.729856 AACCGGTCAGCGCGTACC 62.730 66.667 20.44 20.44 0.00 3.34
911 2821 3.177249 GAACCGGTCAGCGCGTAC 61.177 66.667 8.04 3.87 0.00 3.67
912 2822 2.696409 TTTGAACCGGTCAGCGCGTA 62.696 55.000 8.04 0.00 37.61 4.42
913 2823 4.595538 TTGAACCGGTCAGCGCGT 62.596 61.111 8.04 0.00 37.61 6.01
914 2824 2.182614 AATTTGAACCGGTCAGCGCG 62.183 55.000 8.04 0.00 37.61 6.86
915 2825 0.039527 AAATTTGAACCGGTCAGCGC 60.040 50.000 8.04 0.00 37.61 5.92
916 2826 1.685302 CAAATTTGAACCGGTCAGCG 58.315 50.000 8.04 0.00 37.61 5.18
917 2827 1.418373 GCAAATTTGAACCGGTCAGC 58.582 50.000 22.31 0.48 37.61 4.26
918 2828 1.685302 CGCAAATTTGAACCGGTCAG 58.315 50.000 22.31 0.00 37.61 3.51
919 2829 0.318275 GCGCAAATTTGAACCGGTCA 60.318 50.000 22.31 4.90 0.00 4.02
920 2830 1.006825 GGCGCAAATTTGAACCGGTC 61.007 55.000 22.31 1.72 0.00 4.79
921 2831 1.006688 GGCGCAAATTTGAACCGGT 60.007 52.632 22.31 0.00 0.00 5.28
922 2832 2.085844 CGGCGCAAATTTGAACCGG 61.086 57.895 30.01 18.49 41.51 5.28
923 2833 2.085844 CCGGCGCAAATTTGAACCG 61.086 57.895 30.40 30.40 43.45 4.44
924 2834 2.379634 GCCGGCGCAAATTTGAACC 61.380 57.895 22.31 18.74 34.03 3.62
925 2835 2.715849 CGCCGGCGCAAATTTGAAC 61.716 57.895 38.48 11.81 34.03 3.18
926 2836 2.429907 CGCCGGCGCAAATTTGAA 60.430 55.556 38.48 0.00 34.03 2.69
951 2861 1.669437 GCTTAGGGCGCTGATAGGC 60.669 63.158 14.51 6.39 0.00 3.93
952 2862 4.683432 GCTTAGGGCGCTGATAGG 57.317 61.111 14.51 0.00 0.00 2.57
961 2871 0.582005 CGATGCTTTACGCTTAGGGC 59.418 55.000 0.00 0.00 40.11 5.19
962 2872 1.217882 CCGATGCTTTACGCTTAGGG 58.782 55.000 0.00 0.00 40.11 3.53
963 2873 0.582005 GCCGATGCTTTACGCTTAGG 59.418 55.000 0.00 0.00 40.19 2.69
964 2874 0.582005 GGCCGATGCTTTACGCTTAG 59.418 55.000 0.00 0.00 40.11 2.18
1311 3244 2.488153 GCAGTTTAGGCGATCCAACTTT 59.512 45.455 0.00 0.00 29.14 2.66
1320 3253 4.202245 ACTGAATAAGCAGTTTAGGCGA 57.798 40.909 0.00 0.00 46.42 5.54
1408 3642 0.173708 GAGATGACGGGGACACTGAC 59.826 60.000 0.00 0.00 0.00 3.51
1747 4006 1.873863 GGTCGCAAAGGCCACTTAC 59.126 57.895 5.01 0.00 46.14 2.34
1768 4027 3.017442 TCTCATAAGAGTGGACAGTCGG 58.983 50.000 1.78 0.00 42.66 4.79
2036 6517 0.267356 CATCTTCCCCTCCTCCTCCT 59.733 60.000 0.00 0.00 0.00 3.69
2091 6575 5.221823 GGCTTCCATCTCTAATAGCTCCTTT 60.222 44.000 0.00 0.00 0.00 3.11
2323 6918 1.559368 TTGCCATTGTGGGAAGATGG 58.441 50.000 0.00 0.00 43.15 3.51
2332 6927 1.075542 CTGCTTGCATTGCCATTGTG 58.924 50.000 6.12 0.00 0.00 3.33
2601 7200 2.441348 TACGGCATCTCGGGCAGA 60.441 61.111 0.00 0.00 34.78 4.26
2823 7427 0.322456 TGTCCACAGCCACAATAGCC 60.322 55.000 0.00 0.00 0.00 3.93
2826 7430 3.153369 ACATTGTCCACAGCCACAATA 57.847 42.857 0.00 0.00 40.52 1.90
2865 7469 4.475345 ACCATGTTGTGCCCTTTACTTTA 58.525 39.130 0.00 0.00 0.00 1.85
3021 7625 4.142578 ACACAGACACTCAAGATAGTAGCG 60.143 45.833 0.00 0.00 0.00 4.26
3247 7860 4.628074 TGTGAGTAAGCTTGTAGGACAAC 58.372 43.478 9.86 2.60 33.96 3.32
3253 7866 4.021894 ACCAGACTGTGAGTAAGCTTGTAG 60.022 45.833 9.86 0.95 0.00 2.74
3468 8091 3.006003 GGTCGAAGATGGAGTAAGGATCC 59.994 52.174 2.48 2.48 40.67 3.36
3474 8097 1.843368 ACCGGTCGAAGATGGAGTAA 58.157 50.000 0.00 0.00 40.67 2.24
3519 8142 4.659172 CCCTTGCACTTCCCGGCA 62.659 66.667 0.00 0.00 38.46 5.69
3521 8144 4.659172 TGCCCTTGCACTTCCCGG 62.659 66.667 0.00 0.00 44.23 5.73
3522 8145 3.058160 CTGCCCTTGCACTTCCCG 61.058 66.667 0.00 0.00 44.23 5.14
3541 8164 4.868172 ATGGTGGAGAAGATCATCCAAA 57.132 40.909 13.95 7.85 46.87 3.28
3542 8165 4.202398 GCTATGGTGGAGAAGATCATCCAA 60.202 45.833 13.95 3.11 46.87 3.53
3599 8222 5.401531 ACATCGTCCGGCTATTATAACAT 57.598 39.130 0.00 0.00 0.00 2.71
3600 8223 4.859304 ACATCGTCCGGCTATTATAACA 57.141 40.909 0.00 0.00 0.00 2.41
3607 8230 1.170919 ACGCTACATCGTCCGGCTAT 61.171 55.000 0.00 0.00 38.44 2.97
3625 8248 2.093152 CCCATGCAACTACGTAAACGAC 59.907 50.000 9.86 0.00 43.02 4.34
3655 8278 3.624861 CGGGCCATAGCATATCTCAAATC 59.375 47.826 4.39 0.00 42.56 2.17
3671 8294 1.303236 CAATCTCACAACCGGGCCA 60.303 57.895 6.32 0.00 0.00 5.36
3672 8295 2.046285 CCAATCTCACAACCGGGCC 61.046 63.158 6.32 0.00 0.00 5.80
3676 8305 3.674753 GCAAATTTCCAATCTCACAACCG 59.325 43.478 0.00 0.00 0.00 4.44
3711 8340 2.281208 CGACCCTTCAAACGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
3735 8364 4.043037 GAGTATCTACAACCGGACTTGG 57.957 50.000 9.46 0.00 0.00 3.61
3770 8399 7.265673 GTGGCATCAATCACTAGTTCTACTAA 58.734 38.462 0.00 0.00 29.00 2.24
3771 8400 6.183360 GGTGGCATCAATCACTAGTTCTACTA 60.183 42.308 0.00 0.00 34.57 1.82
3772 8401 5.395768 GGTGGCATCAATCACTAGTTCTACT 60.396 44.000 0.00 0.00 34.57 2.57
3773 8402 4.811557 GGTGGCATCAATCACTAGTTCTAC 59.188 45.833 0.00 0.00 34.57 2.59
3774 8403 4.469586 TGGTGGCATCAATCACTAGTTCTA 59.530 41.667 0.00 0.00 34.57 2.10
3775 8404 3.264193 TGGTGGCATCAATCACTAGTTCT 59.736 43.478 0.00 0.00 34.57 3.01
3776 8405 3.609853 TGGTGGCATCAATCACTAGTTC 58.390 45.455 0.00 0.00 34.57 3.01
3777 8406 3.719268 TGGTGGCATCAATCACTAGTT 57.281 42.857 0.00 0.00 34.57 2.24
3778 8407 3.939740 ATGGTGGCATCAATCACTAGT 57.060 42.857 3.70 0.00 34.57 2.57
3779 8408 4.698780 CCATATGGTGGCATCAATCACTAG 59.301 45.833 14.09 0.00 42.12 2.57
3780 8409 4.654915 CCATATGGTGGCATCAATCACTA 58.345 43.478 14.09 0.00 42.12 2.74
3862 8498 8.262601 TGGAGAGAAATTCAGTATTGCCTATA 57.737 34.615 0.00 0.00 0.00 1.31
3864 8500 6.560003 TGGAGAGAAATTCAGTATTGCCTA 57.440 37.500 0.00 0.00 0.00 3.93
3913 8744 9.268268 CGATTTTAAGGTATGCTGATAAGGTTA 57.732 33.333 0.00 0.00 0.00 2.85
4003 10056 0.980754 TGAGTCACCACCACCTGTGT 60.981 55.000 0.00 0.00 43.85 3.72
4012 10065 3.568853 ACTGTACTGTACTGAGTCACCAC 59.431 47.826 25.41 0.00 0.00 4.16
4017 10070 6.400568 ACTCTCTACTGTACTGTACTGAGTC 58.599 44.000 25.41 0.00 30.94 3.36
4018 10071 6.363167 ACTCTCTACTGTACTGTACTGAGT 57.637 41.667 25.41 22.84 31.38 3.41
4019 10072 8.198778 TGATACTCTCTACTGTACTGTACTGAG 58.801 40.741 25.41 22.05 0.00 3.35
4020 10073 8.075761 TGATACTCTCTACTGTACTGTACTGA 57.924 38.462 25.41 14.18 0.00 3.41
4023 10093 8.721019 ACTTGATACTCTCTACTGTACTGTAC 57.279 38.462 10.98 10.98 0.00 2.90
4028 10098 7.698970 GCTGAAACTTGATACTCTCTACTGTAC 59.301 40.741 0.00 0.00 0.00 2.90
4033 10103 7.434897 CAGATGCTGAAACTTGATACTCTCTAC 59.565 40.741 0.00 0.00 32.44 2.59
4094 11477 1.780309 TGAGGGGTGGAAAGTTCATGT 59.220 47.619 0.00 0.00 0.00 3.21
4128 11511 1.128200 GCCACCCCTTTTTGGAAAGT 58.872 50.000 0.00 0.00 40.53 2.66
4130 11513 2.034048 GCGCCACCCCTTTTTGGAAA 62.034 55.000 0.00 0.00 38.35 3.13
4144 11528 3.659092 CCTTGCTTCGTTGCGCCA 61.659 61.111 4.18 0.00 35.36 5.69
4188 11572 0.617820 AATCCCTCGTGGCTACAGGT 60.618 55.000 14.43 0.00 34.26 4.00
4213 11597 7.508848 CATCTGGTTAGGTGGTCCTTTTGGA 62.509 48.000 0.00 0.00 42.12 3.53
4214 11598 2.107552 TCTGGTTAGGTGGTCCTTTTGG 59.892 50.000 0.00 0.00 42.12 3.28
4215 11599 3.502123 TCTGGTTAGGTGGTCCTTTTG 57.498 47.619 0.00 0.00 42.12 2.44
4216 11600 3.655777 TCATCTGGTTAGGTGGTCCTTTT 59.344 43.478 0.00 0.00 42.12 2.27
4217 11601 3.256704 TCATCTGGTTAGGTGGTCCTTT 58.743 45.455 0.00 0.00 42.12 3.11
4218 11602 2.915869 TCATCTGGTTAGGTGGTCCTT 58.084 47.619 0.00 0.00 42.12 3.36
4220 11604 3.933861 ATTCATCTGGTTAGGTGGTCC 57.066 47.619 0.00 0.00 35.67 4.46
4221 11605 4.636206 GTCAATTCATCTGGTTAGGTGGTC 59.364 45.833 0.00 0.00 35.67 4.02
4222 11606 4.042809 TGTCAATTCATCTGGTTAGGTGGT 59.957 41.667 0.00 0.00 35.67 4.16
4223 11607 4.588899 TGTCAATTCATCTGGTTAGGTGG 58.411 43.478 0.00 0.00 35.67 4.61
4224 11608 6.573664 TTTGTCAATTCATCTGGTTAGGTG 57.426 37.500 0.00 0.00 36.33 4.00
4225 11609 7.595819 TTTTTGTCAATTCATCTGGTTAGGT 57.404 32.000 0.00 0.00 0.00 3.08
4248 11632 9.696917 GTCAAATTGATCCACAAATAGTCTTTT 57.303 29.630 0.00 0.00 42.03 2.27
4249 11633 8.859090 TGTCAAATTGATCCACAAATAGTCTTT 58.141 29.630 0.00 0.00 42.03 2.52
4250 11634 8.408043 TGTCAAATTGATCCACAAATAGTCTT 57.592 30.769 0.00 0.00 42.03 3.01
4251 11635 8.408043 TTGTCAAATTGATCCACAAATAGTCT 57.592 30.769 0.00 0.00 42.03 3.24
4252 11636 9.474920 TTTTGTCAAATTGATCCACAAATAGTC 57.525 29.630 10.21 0.00 42.03 2.59
4253 11637 9.829507 TTTTTGTCAAATTGATCCACAAATAGT 57.170 25.926 10.21 0.00 42.03 2.12
4276 11660 3.021451 CCGCTGAGGTGGTCTTTTT 57.979 52.632 0.00 0.00 38.25 1.94
4277 11661 4.800554 CCGCTGAGGTGGTCTTTT 57.199 55.556 0.00 0.00 38.25 2.27
4313 11697 4.961511 TCAGGCGCCACGTGTCAC 62.962 66.667 31.54 2.47 35.61 3.67
4314 11698 4.961511 GTCAGGCGCCACGTGTCA 62.962 66.667 31.54 0.00 35.61 3.58
4325 11709 1.226686 CTGCTATCATGGCGTCAGGC 61.227 60.000 0.00 0.00 44.11 4.85
4326 11710 0.602106 CCTGCTATCATGGCGTCAGG 60.602 60.000 0.00 0.00 35.68 3.86
4327 11711 1.226686 GCCTGCTATCATGGCGTCAG 61.227 60.000 0.00 0.00 37.11 3.51
4328 11712 1.227645 GCCTGCTATCATGGCGTCA 60.228 57.895 0.00 0.00 37.11 4.35
4329 11713 3.647824 GCCTGCTATCATGGCGTC 58.352 61.111 0.00 0.00 37.11 5.19
4332 11716 1.477700 TGTTTTGCCTGCTATCATGGC 59.522 47.619 0.00 0.00 46.26 4.40
4333 11717 3.131577 ACATGTTTTGCCTGCTATCATGG 59.868 43.478 16.33 0.00 36.52 3.66
4334 11718 4.380841 ACATGTTTTGCCTGCTATCATG 57.619 40.909 0.00 13.08 37.68 3.07
4335 11719 5.410355 AAACATGTTTTGCCTGCTATCAT 57.590 34.783 18.13 0.00 0.00 2.45
4336 11720 4.870123 AAACATGTTTTGCCTGCTATCA 57.130 36.364 18.13 0.00 0.00 2.15
4337 11721 4.324402 CGAAAACATGTTTTGCCTGCTATC 59.676 41.667 34.88 19.01 42.26 2.08
4338 11722 4.236935 CGAAAACATGTTTTGCCTGCTAT 58.763 39.130 34.88 12.95 42.26 2.97
4339 11723 3.067461 ACGAAAACATGTTTTGCCTGCTA 59.933 39.130 34.88 0.00 42.26 3.49
4340 11724 2.159114 ACGAAAACATGTTTTGCCTGCT 60.159 40.909 34.88 14.36 42.26 4.24
4341 11725 2.200899 ACGAAAACATGTTTTGCCTGC 58.799 42.857 34.88 21.07 42.26 4.85
4342 11726 3.543852 GCAACGAAAACATGTTTTGCCTG 60.544 43.478 34.88 26.68 42.26 4.85
4343 11727 2.607180 GCAACGAAAACATGTTTTGCCT 59.393 40.909 34.88 16.14 42.26 4.75
4344 11728 2.286125 GGCAACGAAAACATGTTTTGCC 60.286 45.455 32.96 32.96 42.10 4.52
4345 11729 2.967781 GGCAACGAAAACATGTTTTGC 58.032 42.857 34.88 30.30 42.26 3.68
4367 11751 4.452733 CTCTGGCCCGTTCCGTCC 62.453 72.222 0.00 0.00 0.00 4.79
4370 11754 4.473520 ATGCTCTGGCCCGTTCCG 62.474 66.667 0.00 0.00 37.74 4.30
4371 11755 2.825836 CATGCTCTGGCCCGTTCC 60.826 66.667 0.00 0.00 37.74 3.62
4372 11756 2.045926 ACATGCTCTGGCCCGTTC 60.046 61.111 0.00 0.00 37.74 3.95
4373 11757 2.360350 CACATGCTCTGGCCCGTT 60.360 61.111 0.00 0.00 37.74 4.44
4374 11758 4.415150 CCACATGCTCTGGCCCGT 62.415 66.667 0.00 0.00 37.74 5.28
4378 11762 4.746309 TGGCCCACATGCTCTGGC 62.746 66.667 0.00 6.80 43.26 4.85
4379 11763 2.277737 ATGGCCCACATGCTCTGG 59.722 61.111 0.00 0.00 38.70 3.86
4393 11777 4.858433 CGTGCAATGGCGGCATGG 62.858 66.667 26.50 23.93 44.11 3.66
4394 11778 3.744749 CTCGTGCAATGGCGGCATG 62.745 63.158 26.50 19.20 46.94 4.06
4395 11779 3.511595 CTCGTGCAATGGCGGCAT 61.512 61.111 20.18 20.18 44.11 4.40
4413 11797 3.876198 CAACATAGTGGCGGCCGC 61.876 66.667 41.63 41.63 41.06 6.53
4414 11798 3.876198 GCAACATAGTGGCGGCCG 61.876 66.667 24.05 24.05 0.00 6.13
4415 11799 2.438434 AGCAACATAGTGGCGGCC 60.438 61.111 13.32 13.32 37.59 6.13
4416 11800 2.793946 CAGCAACATAGTGGCGGC 59.206 61.111 0.00 0.00 37.59 6.53
4417 11801 2.764314 GGCAGCAACATAGTGGCGG 61.764 63.158 0.00 0.00 37.59 6.13
4418 11802 2.793946 GGCAGCAACATAGTGGCG 59.206 61.111 0.00 0.00 37.59 5.69
4419 11803 2.793946 CGGCAGCAACATAGTGGC 59.206 61.111 0.00 0.00 31.62 5.01
4420 11804 2.793946 GCGGCAGCAACATAGTGG 59.206 61.111 3.18 0.00 44.35 4.00
4421 11805 2.400798 CGCGGCAGCAACATAGTG 59.599 61.111 10.08 0.00 45.49 2.74
4422 11806 3.499737 GCGCGGCAGCAACATAGT 61.500 61.111 8.83 0.00 45.49 2.12
4423 11807 4.241999 GGCGCGGCAGCAACATAG 62.242 66.667 29.32 0.00 45.49 2.23
4424 11808 3.378399 TAGGCGCGGCAGCAACATA 62.378 57.895 34.94 13.49 45.49 2.29
4425 11809 4.776322 TAGGCGCGGCAGCAACAT 62.776 61.111 34.94 14.62 45.49 2.71
4483 11867 4.758251 TCGTGGAGTGGCGGCATG 62.758 66.667 17.19 0.00 0.00 4.06
4484 11868 4.457496 CTCGTGGAGTGGCGGCAT 62.457 66.667 17.19 4.02 0.00 4.40
4490 11874 3.535629 TTGCTGCCTCGTGGAGTGG 62.536 63.158 7.92 0.00 36.61 4.00
4491 11875 2.031012 TTGCTGCCTCGTGGAGTG 59.969 61.111 7.92 0.00 34.57 3.51
4492 11876 2.031163 GTTGCTGCCTCGTGGAGT 59.969 61.111 7.92 0.00 34.57 3.85
4493 11877 2.842394 ATCGTTGCTGCCTCGTGGAG 62.842 60.000 7.92 3.35 34.57 3.86
4494 11878 2.942796 ATCGTTGCTGCCTCGTGGA 61.943 57.895 7.92 0.00 34.57 4.02
4495 11879 2.434884 ATCGTTGCTGCCTCGTGG 60.435 61.111 11.81 0.00 0.00 4.94
4496 11880 1.568612 AACATCGTTGCTGCCTCGTG 61.569 55.000 11.81 11.43 0.00 4.35
4497 11881 1.301716 AACATCGTTGCTGCCTCGT 60.302 52.632 11.81 0.29 0.00 4.18
4498 11882 1.133253 CAACATCGTTGCTGCCTCG 59.867 57.895 0.00 2.01 0.00 4.63
4499 11883 1.154150 GCAACATCGTTGCTGCCTC 60.154 57.895 21.38 0.00 38.70 4.70
4500 11884 2.956987 GCAACATCGTTGCTGCCT 59.043 55.556 21.38 0.00 38.70 4.75
4505 11889 2.084681 GCAGCAGCAACATCGTTGC 61.085 57.895 21.19 21.19 45.22 4.17
4506 11890 4.141883 GCAGCAGCAACATCGTTG 57.858 55.556 0.00 2.48 41.58 4.10
4523 11907 3.593551 AAAGTTGTCGCGCGGCATG 62.594 57.895 39.22 5.17 0.00 4.06
4524 11908 3.353836 AAAGTTGTCGCGCGGCAT 61.354 55.556 39.22 22.64 0.00 4.40
4525 11909 4.306471 CAAAGTTGTCGCGCGGCA 62.306 61.111 35.76 35.76 0.00 5.69
4527 11911 4.012895 AGCAAAGTTGTCGCGCGG 62.013 61.111 31.69 12.28 0.00 6.46
4528 11912 2.792543 CAGCAAAGTTGTCGCGCG 60.793 61.111 26.76 26.76 0.00 6.86
4529 11913 2.005537 CACAGCAAAGTTGTCGCGC 61.006 57.895 0.00 0.00 0.00 6.86
4530 11914 1.369209 CCACAGCAAAGTTGTCGCG 60.369 57.895 0.00 0.00 0.00 5.87
4531 11915 1.658409 GCCACAGCAAAGTTGTCGC 60.658 57.895 0.00 0.00 39.53 5.19
4532 11916 4.614673 GCCACAGCAAAGTTGTCG 57.385 55.556 0.00 0.00 39.53 4.35
4542 11926 4.664677 ACCGTCGTCTGCCACAGC 62.665 66.667 0.00 0.00 40.48 4.40
4543 11927 2.492449 ATCACCGTCGTCTGCCACAG 62.492 60.000 0.00 0.00 0.00 3.66
4544 11928 2.094757 AATCACCGTCGTCTGCCACA 62.095 55.000 0.00 0.00 0.00 4.17
4545 11929 1.352156 GAATCACCGTCGTCTGCCAC 61.352 60.000 0.00 0.00 0.00 5.01
4546 11930 1.080093 GAATCACCGTCGTCTGCCA 60.080 57.895 0.00 0.00 0.00 4.92
4547 11931 1.810030 GGAATCACCGTCGTCTGCC 60.810 63.158 0.00 0.00 0.00 4.85
4548 11932 1.810030 GGGAATCACCGTCGTCTGC 60.810 63.158 0.00 0.00 40.11 4.26
4549 11933 0.175760 ATGGGAATCACCGTCGTCTG 59.824 55.000 0.00 0.00 40.11 3.51
4550 11934 0.175760 CATGGGAATCACCGTCGTCT 59.824 55.000 0.00 0.00 40.11 4.18
4551 11935 1.429148 GCATGGGAATCACCGTCGTC 61.429 60.000 0.00 0.00 40.11 4.20
4552 11936 1.449601 GCATGGGAATCACCGTCGT 60.450 57.895 0.00 0.00 40.11 4.34
4553 11937 2.525248 CGCATGGGAATCACCGTCG 61.525 63.158 3.11 0.00 40.11 5.12
4554 11938 2.180204 CCGCATGGGAATCACCGTC 61.180 63.158 12.02 0.00 40.11 4.79
4555 11939 2.124736 CCGCATGGGAATCACCGT 60.125 61.111 12.02 0.00 40.11 4.83
4556 11940 2.189257 TCCGCATGGGAATCACCG 59.811 61.111 12.02 0.00 43.62 4.94
4570 11954 0.093026 GTGAAAATCAGCGTCGTCCG 59.907 55.000 0.00 0.00 40.40 4.79
4571 11955 0.093026 CGTGAAAATCAGCGTCGTCC 59.907 55.000 0.00 0.00 0.00 4.79
4572 11956 0.093026 CCGTGAAAATCAGCGTCGTC 59.907 55.000 0.00 0.00 0.00 4.20
4573 11957 1.289109 CCCGTGAAAATCAGCGTCGT 61.289 55.000 0.00 0.00 0.00 4.34
4574 11958 1.419922 CCCGTGAAAATCAGCGTCG 59.580 57.895 0.00 0.00 0.00 5.12
4575 11959 1.134694 GCCCGTGAAAATCAGCGTC 59.865 57.895 0.00 0.00 0.00 5.19
4576 11960 1.577328 CTGCCCGTGAAAATCAGCGT 61.577 55.000 0.00 0.00 0.00 5.07
4577 11961 1.135315 CTGCCCGTGAAAATCAGCG 59.865 57.895 0.00 0.00 0.00 5.18
4578 11962 0.960364 TCCTGCCCGTGAAAATCAGC 60.960 55.000 0.00 0.00 0.00 4.26
4579 11963 1.533625 TTCCTGCCCGTGAAAATCAG 58.466 50.000 0.00 0.00 0.00 2.90
4580 11964 2.091541 GATTCCTGCCCGTGAAAATCA 58.908 47.619 0.00 0.00 0.00 2.57
4581 11965 1.405463 GGATTCCTGCCCGTGAAAATC 59.595 52.381 0.00 0.00 0.00 2.17
4582 11966 1.474330 GGATTCCTGCCCGTGAAAAT 58.526 50.000 0.00 0.00 0.00 1.82
4583 11967 0.958382 CGGATTCCTGCCCGTGAAAA 60.958 55.000 0.30 0.00 40.78 2.29
4584 11968 1.376683 CGGATTCCTGCCCGTGAAA 60.377 57.895 0.30 0.00 40.78 2.69
4585 11969 1.622607 ATCGGATTCCTGCCCGTGAA 61.623 55.000 0.30 0.00 45.48 3.18
4586 11970 2.063979 ATCGGATTCCTGCCCGTGA 61.064 57.895 0.30 0.00 45.48 4.35
4587 11971 2.505982 ATCGGATTCCTGCCCGTG 59.494 61.111 0.30 0.00 45.48 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.