Multiple sequence alignment - TraesCS2D01G187300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G187300 chr2D 100.000 3053 0 0 1 3053 131269977 131273029 0.000000e+00 5638.0
1 TraesCS2D01G187300 chr2D 78.906 640 77 29 1413 2045 131191571 131192159 6.180000e-102 381.0
2 TraesCS2D01G187300 chr2D 77.881 538 77 21 1032 1559 131191260 131191765 2.300000e-76 296.0
3 TraesCS2D01G187300 chr2D 74.150 294 61 10 38 327 354318467 354318185 1.160000e-19 108.0
4 TraesCS2D01G187300 chr2D 100.000 31 0 0 2849 2879 10432106 10432076 1.180000e-04 58.4
5 TraesCS2D01G187300 chr2A 90.014 1452 87 22 743 2154 137928268 137929701 0.000000e+00 1825.0
6 TraesCS2D01G187300 chr2A 86.388 551 58 12 2315 2851 137929735 137930282 1.220000e-163 586.0
7 TraesCS2D01G187300 chr2A 79.111 742 94 28 1269 1994 137278164 137278860 3.590000e-124 455.0
8 TraesCS2D01G187300 chr2A 89.276 373 22 11 346 706 137927594 137927960 4.640000e-123 451.0
9 TraesCS2D01G187300 chr2A 77.063 715 93 33 734 1439 137277727 137278379 2.250000e-91 346.0
10 TraesCS2D01G187300 chr2B 89.269 1314 72 11 733 2040 184770564 184771814 0.000000e+00 1581.0
11 TraesCS2D01G187300 chr2B 85.692 636 72 14 2221 2847 184771855 184772480 0.000000e+00 652.0
12 TraesCS2D01G187300 chr2B 90.196 357 22 9 346 695 184770208 184770558 1.290000e-123 453.0
13 TraesCS2D01G187300 chr2B 81.818 385 46 11 1055 1439 184667103 184667463 4.950000e-78 302.0
14 TraesCS2D01G187300 chr2B 86.111 108 14 1 236 343 49895653 49895547 6.920000e-22 115.0
15 TraesCS2D01G187300 chr2B 79.221 154 18 5 2900 3053 442784860 442784999 9.010000e-16 95.3
16 TraesCS2D01G187300 chr6A 91.866 209 15 2 2845 3053 103960617 103960823 1.070000e-74 291.0
17 TraesCS2D01G187300 chr6A 91.176 204 16 2 2852 3053 74807770 74807973 3.000000e-70 276.0
18 TraesCS2D01G187300 chr6A 96.875 32 1 0 2156 2187 386760323 386760292 2.000000e-03 54.7
19 TraesCS2D01G187300 chr1D 90.640 203 18 1 2852 3053 270618060 270618262 5.020000e-68 268.0
20 TraesCS2D01G187300 chr1D 100.000 34 0 0 2183 2216 263327567 263327600 2.540000e-06 63.9
21 TraesCS2D01G187300 chr7A 87.379 206 24 1 2849 3052 105225438 105225233 5.090000e-58 235.0
22 TraesCS2D01G187300 chr7A 84.932 73 3 1 2156 2220 658646927 658646855 1.960000e-07 67.6
23 TraesCS2D01G187300 chr5B 87.831 189 21 2 2852 3039 458698561 458698748 1.420000e-53 220.0
24 TraesCS2D01G187300 chr5B 77.885 312 57 6 43 343 658462934 658462624 1.870000e-42 183.0
25 TraesCS2D01G187300 chr5B 97.436 39 1 0 1 39 210079776 210079814 1.960000e-07 67.6
26 TraesCS2D01G187300 chr3D 80.617 227 29 6 138 349 511735957 511736183 8.760000e-36 161.0
27 TraesCS2D01G187300 chr3D 75.152 330 55 9 38 343 78005485 78005159 2.470000e-26 130.0
28 TraesCS2D01G187300 chr3D 76.136 264 42 8 93 343 352103884 352104139 5.350000e-23 119.0
29 TraesCS2D01G187300 chr3D 92.683 41 3 0 42 82 123487756 123487716 3.290000e-05 60.2
30 TraesCS2D01G187300 chr3D 100.000 29 0 0 2156 2184 341465173 341465201 2.000000e-03 54.7
31 TraesCS2D01G187300 chr3D 100.000 28 0 0 2190 2217 101770097 101770124 6.000000e-03 52.8
32 TraesCS2D01G187300 chrUn 78.802 217 31 11 141 347 331160417 331160206 6.870000e-27 132.0
33 TraesCS2D01G187300 chrUn 78.440 218 31 11 141 347 33334749 33334961 8.880000e-26 128.0
34 TraesCS2D01G187300 chrUn 75.000 332 55 11 38 345 86806438 86806111 8.880000e-26 128.0
35 TraesCS2D01G187300 chr5D 87.156 109 14 0 238 346 446551493 446551601 1.150000e-24 124.0
36 TraesCS2D01G187300 chr5D 100.000 29 0 0 2851 2879 340103168 340103196 2.000000e-03 54.7
37 TraesCS2D01G187300 chr7D 75.073 341 46 14 38 345 86076967 86077301 4.130000e-24 122.0
38 TraesCS2D01G187300 chr7D 97.368 38 1 0 1 38 539507013 539506976 7.070000e-07 65.8
39 TraesCS2D01G187300 chr6B 86.111 108 13 2 237 343 601573 601467 6.920000e-22 115.0
40 TraesCS2D01G187300 chr6B 97.297 37 1 0 1 37 319206368 319206404 2.540000e-06 63.9
41 TraesCS2D01G187300 chr6B 96.875 32 1 0 2628 2659 679283991 679284022 2.000000e-03 54.7
42 TraesCS2D01G187300 chr6B 100.000 29 0 0 2631 2659 679337540 679337512 2.000000e-03 54.7
43 TraesCS2D01G187300 chr6B 100.000 28 0 0 2190 2217 521827706 521827733 6.000000e-03 52.8
44 TraesCS2D01G187300 chr1B 84.545 110 17 0 237 346 486297465 486297356 3.220000e-20 110.0
45 TraesCS2D01G187300 chr1B 100.000 35 0 0 4 38 106378886 106378852 7.070000e-07 65.8
46 TraesCS2D01G187300 chr1B 97.297 37 1 0 1 37 358757526 358757562 2.540000e-06 63.9
47 TraesCS2D01G187300 chr1B 100.000 29 0 0 2156 2184 121004867 121004895 2.000000e-03 54.7
48 TraesCS2D01G187300 chr3B 88.043 92 10 1 42 132 773522886 773522795 1.160000e-19 108.0
49 TraesCS2D01G187300 chr3B 92.105 38 3 0 2637 2674 394944892 394944929 2.000000e-03 54.7
50 TraesCS2D01G187300 chr3B 100.000 28 0 0 2190 2217 399099344 399099317 6.000000e-03 52.8
51 TraesCS2D01G187300 chr4B 81.667 120 22 0 2574 2693 531092984 531092865 1.940000e-17 100.0
52 TraesCS2D01G187300 chr4B 97.368 38 1 0 1 38 342838355 342838392 7.070000e-07 65.8
53 TraesCS2D01G187300 chr4B 97.368 38 0 1 1 38 366954386 366954422 2.540000e-06 63.9
54 TraesCS2D01G187300 chr4B 94.737 38 1 1 2183 2219 117194434 117194397 1.180000e-04 58.4
55 TraesCS2D01G187300 chr5A 86.047 86 10 2 2425 2509 365923348 365923432 1.170000e-14 91.6
56 TraesCS2D01G187300 chr3A 86.076 79 9 2 38 115 526504206 526504283 1.950000e-12 84.2
57 TraesCS2D01G187300 chr3A 97.368 38 1 0 1 38 533050607 533050644 7.070000e-07 65.8
58 TraesCS2D01G187300 chr3A 100.000 29 0 0 2156 2184 543948234 543948262 2.000000e-03 54.7
59 TraesCS2D01G187300 chr4A 100.000 37 0 0 1 37 616106823 616106787 5.460000e-08 69.4
60 TraesCS2D01G187300 chr4A 97.059 34 1 0 2183 2216 584057148 584057181 1.180000e-04 58.4
61 TraesCS2D01G187300 chr4A 94.444 36 2 0 2156 2191 215254337 215254302 4.250000e-04 56.5
62 TraesCS2D01G187300 chr4A 92.308 39 3 0 44 82 627740297 627740335 4.250000e-04 56.5
63 TraesCS2D01G187300 chr4A 100.000 29 0 0 2156 2184 454271872 454271900 2.000000e-03 54.7
64 TraesCS2D01G187300 chr1A 100.000 35 0 0 2183 2217 456338238 456338272 7.070000e-07 65.8
65 TraesCS2D01G187300 chr7B 100.000 30 0 0 53 82 500241704 500241675 4.250000e-04 56.5
66 TraesCS2D01G187300 chr7B 96.875 32 1 0 2153 2184 338071180 338071211 2.000000e-03 54.7
67 TraesCS2D01G187300 chr6D 84.127 63 5 5 2842 2902 421472472 421472413 4.250000e-04 56.5
68 TraesCS2D01G187300 chr6D 96.875 32 1 0 2156 2187 293316666 293316635 2.000000e-03 54.7
69 TraesCS2D01G187300 chr4D 100.000 30 0 0 2850 2879 52830604 52830575 4.250000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G187300 chr2D 131269977 131273029 3052 False 5638.000000 5638 100.000000 1 3053 1 chr2D.!!$F1 3052
1 TraesCS2D01G187300 chr2D 131191260 131192159 899 False 338.500000 381 78.393500 1032 2045 2 chr2D.!!$F2 1013
2 TraesCS2D01G187300 chr2A 137927594 137930282 2688 False 954.000000 1825 88.559333 346 2851 3 chr2A.!!$F2 2505
3 TraesCS2D01G187300 chr2A 137277727 137278860 1133 False 400.500000 455 78.087000 734 1994 2 chr2A.!!$F1 1260
4 TraesCS2D01G187300 chr2B 184770208 184772480 2272 False 895.333333 1581 88.385667 346 2847 3 chr2B.!!$F3 2501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.036388 GATCGTTGTGAGGCTCCCAA 60.036 55.0 12.86 10.52 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2481 0.167251 GGTTTTACACGTGATGGCGG 59.833 55.0 25.01 0.0 35.98 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.890814 CCCCCTTCTGGTCGATATACT 58.109 52.381 0.00 0.00 0.00 2.12
24 25 2.826725 CCCCCTTCTGGTCGATATACTC 59.173 54.545 0.00 0.00 0.00 2.59
25 26 3.500654 CCCCCTTCTGGTCGATATACTCT 60.501 52.174 0.00 0.00 0.00 3.24
26 27 3.759618 CCCCTTCTGGTCGATATACTCTC 59.240 52.174 0.00 0.00 0.00 3.20
27 28 3.437395 CCCTTCTGGTCGATATACTCTCG 59.563 52.174 0.00 0.00 37.47 4.04
28 29 3.437395 CCTTCTGGTCGATATACTCTCGG 59.563 52.174 0.00 0.00 36.78 4.63
29 30 3.766068 TCTGGTCGATATACTCTCGGT 57.234 47.619 0.00 0.00 36.78 4.69
30 31 3.661944 TCTGGTCGATATACTCTCGGTC 58.338 50.000 0.00 0.00 36.78 4.79
31 32 2.743126 CTGGTCGATATACTCTCGGTCC 59.257 54.545 0.00 0.00 36.78 4.46
32 33 2.371179 TGGTCGATATACTCTCGGTCCT 59.629 50.000 0.00 0.00 36.78 3.85
33 34 3.580022 TGGTCGATATACTCTCGGTCCTA 59.420 47.826 0.00 0.00 36.78 2.94
34 35 4.040829 TGGTCGATATACTCTCGGTCCTAA 59.959 45.833 0.00 0.00 36.78 2.69
35 36 4.391523 GGTCGATATACTCTCGGTCCTAAC 59.608 50.000 0.00 0.00 36.78 2.34
36 37 4.993584 GTCGATATACTCTCGGTCCTAACA 59.006 45.833 0.00 0.00 36.78 2.41
37 38 5.468072 GTCGATATACTCTCGGTCCTAACAA 59.532 44.000 0.00 0.00 36.78 2.83
38 39 5.468072 TCGATATACTCTCGGTCCTAACAAC 59.532 44.000 0.00 0.00 36.78 3.32
39 40 5.614231 CGATATACTCTCGGTCCTAACAACG 60.614 48.000 0.00 0.00 32.58 4.10
40 41 0.886563 ACTCTCGGTCCTAACAACGG 59.113 55.000 0.00 0.00 0.00 4.44
41 42 0.458025 CTCTCGGTCCTAACAACGGC 60.458 60.000 0.00 0.00 0.00 5.68
42 43 1.447314 CTCGGTCCTAACAACGGCC 60.447 63.158 0.00 0.00 0.00 6.13
43 44 2.812178 CGGTCCTAACAACGGCCG 60.812 66.667 26.86 26.86 35.84 6.13
44 45 2.344872 GGTCCTAACAACGGCCGT 59.655 61.111 28.70 28.70 0.00 5.68
45 46 2.030958 GGTCCTAACAACGGCCGTG 61.031 63.158 34.95 26.65 0.00 4.94
46 47 1.005867 GTCCTAACAACGGCCGTGA 60.006 57.895 34.95 20.98 0.00 4.35
47 48 1.005867 TCCTAACAACGGCCGTGAC 60.006 57.895 34.95 0.00 0.00 3.67
48 49 1.005394 CCTAACAACGGCCGTGACT 60.005 57.895 34.95 20.89 0.00 3.41
49 50 0.601841 CCTAACAACGGCCGTGACTT 60.602 55.000 34.95 23.90 0.00 3.01
50 51 1.223187 CTAACAACGGCCGTGACTTT 58.777 50.000 34.95 23.06 0.00 2.66
51 52 0.938713 TAACAACGGCCGTGACTTTG 59.061 50.000 34.95 27.51 0.00 2.77
52 53 1.720694 AACAACGGCCGTGACTTTGG 61.721 55.000 34.95 17.06 0.00 3.28
57 58 3.027292 GCCGTGACTTTGGCGAAA 58.973 55.556 0.00 0.00 42.22 3.46
58 59 1.082104 GCCGTGACTTTGGCGAAAG 60.082 57.895 18.43 18.43 42.22 2.62
71 72 3.773117 CGAAAGCAAAATCGTGCCT 57.227 47.368 0.00 0.00 46.14 4.75
72 73 1.606606 CGAAAGCAAAATCGTGCCTC 58.393 50.000 0.00 0.00 46.14 4.70
73 74 1.197721 CGAAAGCAAAATCGTGCCTCT 59.802 47.619 0.00 0.00 46.14 3.69
74 75 2.726066 CGAAAGCAAAATCGTGCCTCTC 60.726 50.000 0.00 0.00 46.14 3.20
75 76 0.798776 AAGCAAAATCGTGCCTCTCG 59.201 50.000 0.00 0.00 46.14 4.04
76 77 1.226128 GCAAAATCGTGCCTCTCGC 60.226 57.895 0.00 0.00 38.66 5.03
98 99 4.999484 CGAAAGCTAATGCATAACTCTCG 58.001 43.478 0.00 2.16 42.74 4.04
99 100 4.504461 CGAAAGCTAATGCATAACTCTCGT 59.496 41.667 0.00 0.00 42.74 4.18
100 101 5.555256 CGAAAGCTAATGCATAACTCTCGTG 60.555 44.000 0.00 0.00 42.74 4.35
101 102 4.655762 AGCTAATGCATAACTCTCGTGA 57.344 40.909 0.00 0.00 42.74 4.35
102 103 5.011090 AGCTAATGCATAACTCTCGTGAA 57.989 39.130 0.00 0.00 42.74 3.18
103 104 5.419542 AGCTAATGCATAACTCTCGTGAAA 58.580 37.500 0.00 0.00 42.74 2.69
104 105 5.521735 AGCTAATGCATAACTCTCGTGAAAG 59.478 40.000 0.00 0.00 42.74 2.62
105 106 5.520288 GCTAATGCATAACTCTCGTGAAAGA 59.480 40.000 0.00 0.00 39.41 2.52
106 107 6.036083 GCTAATGCATAACTCTCGTGAAAGAA 59.964 38.462 0.00 0.00 39.41 2.52
107 108 6.801539 AATGCATAACTCTCGTGAAAGAAA 57.198 33.333 0.00 0.00 0.00 2.52
108 109 6.801539 ATGCATAACTCTCGTGAAAGAAAA 57.198 33.333 0.00 0.00 0.00 2.29
109 110 6.612247 TGCATAACTCTCGTGAAAGAAAAA 57.388 33.333 0.00 0.00 0.00 1.94
166 167 9.594478 TTTTTGATCCAAAAACTAAAGAAGACC 57.406 29.630 12.03 0.00 44.78 3.85
167 168 6.554334 TGATCCAAAAACTAAAGAAGACCG 57.446 37.500 0.00 0.00 0.00 4.79
168 169 5.472137 TGATCCAAAAACTAAAGAAGACCGG 59.528 40.000 0.00 0.00 0.00 5.28
169 170 4.784177 TCCAAAAACTAAAGAAGACCGGT 58.216 39.130 6.92 6.92 0.00 5.28
170 171 4.577283 TCCAAAAACTAAAGAAGACCGGTG 59.423 41.667 14.63 0.00 0.00 4.94
171 172 4.261447 CCAAAAACTAAAGAAGACCGGTGG 60.261 45.833 14.63 0.00 0.00 4.61
172 173 4.426736 AAAACTAAAGAAGACCGGTGGA 57.573 40.909 14.63 0.00 0.00 4.02
173 174 4.426736 AAACTAAAGAAGACCGGTGGAA 57.573 40.909 14.63 0.00 0.00 3.53
174 175 4.426736 AACTAAAGAAGACCGGTGGAAA 57.573 40.909 14.63 0.00 0.00 3.13
175 176 4.426736 ACTAAAGAAGACCGGTGGAAAA 57.573 40.909 14.63 0.00 0.00 2.29
176 177 4.132336 ACTAAAGAAGACCGGTGGAAAAC 58.868 43.478 14.63 0.00 0.00 2.43
177 178 1.977056 AAGAAGACCGGTGGAAAACC 58.023 50.000 14.63 0.00 46.60 3.27
255 256 3.876300 CGAAGGAAACGCCCAGAG 58.124 61.111 0.00 0.00 37.37 3.35
256 257 2.391389 CGAAGGAAACGCCCAGAGC 61.391 63.158 0.00 0.00 37.37 4.09
281 282 4.803426 GTGGCGGGCGACTGAGAG 62.803 72.222 0.00 0.00 39.98 3.20
285 286 3.753434 CGGGCGACTGAGAGCACT 61.753 66.667 0.00 0.00 39.98 4.40
286 287 2.183046 GGGCGACTGAGAGCACTC 59.817 66.667 3.95 3.95 42.88 3.51
287 288 2.183046 GGCGACTGAGAGCACTCC 59.817 66.667 8.77 0.00 41.99 3.85
288 289 2.640302 GGCGACTGAGAGCACTCCA 61.640 63.158 8.77 0.00 41.99 3.86
289 290 1.153862 GCGACTGAGAGCACTCCAG 60.154 63.158 8.77 8.51 41.99 3.86
290 291 1.510383 CGACTGAGAGCACTCCAGG 59.490 63.158 8.77 2.06 41.99 4.45
291 292 1.247419 CGACTGAGAGCACTCCAGGT 61.247 60.000 8.77 5.14 41.99 4.00
293 294 1.190833 ACTGAGAGCACTCCAGGTGG 61.191 60.000 8.77 0.00 45.44 4.61
299 300 3.625897 CACTCCAGGTGGTGCCGA 61.626 66.667 0.00 0.00 43.70 5.54
300 301 2.607750 ACTCCAGGTGGTGCCGAT 60.608 61.111 0.00 0.00 43.70 4.18
301 302 2.187946 CTCCAGGTGGTGCCGATC 59.812 66.667 0.00 0.00 43.70 3.69
302 303 3.723235 CTCCAGGTGGTGCCGATCG 62.723 68.421 8.51 8.51 43.70 3.69
303 304 4.082523 CCAGGTGGTGCCGATCGT 62.083 66.667 15.09 0.00 43.70 3.73
304 305 2.047274 CAGGTGGTGCCGATCGTT 60.047 61.111 15.09 0.00 43.70 3.85
305 306 2.047274 AGGTGGTGCCGATCGTTG 60.047 61.111 15.09 0.08 43.70 4.10
306 307 2.358247 GGTGGTGCCGATCGTTGT 60.358 61.111 15.09 0.00 0.00 3.32
307 308 2.677003 GGTGGTGCCGATCGTTGTG 61.677 63.158 15.09 0.00 0.00 3.33
308 309 1.666553 GTGGTGCCGATCGTTGTGA 60.667 57.895 15.09 0.00 0.00 3.58
309 310 1.374125 TGGTGCCGATCGTTGTGAG 60.374 57.895 15.09 0.00 0.00 3.51
310 311 2.100631 GGTGCCGATCGTTGTGAGG 61.101 63.158 15.09 0.00 0.00 3.86
312 313 2.125512 GCCGATCGTTGTGAGGCT 60.126 61.111 15.09 0.00 44.06 4.58
313 314 2.167861 GCCGATCGTTGTGAGGCTC 61.168 63.158 15.09 7.79 44.06 4.70
314 315 1.519455 CCGATCGTTGTGAGGCTCC 60.519 63.158 15.09 4.00 0.00 4.70
315 316 1.519455 CGATCGTTGTGAGGCTCCC 60.519 63.158 12.86 0.00 0.00 4.30
316 317 1.596934 GATCGTTGTGAGGCTCCCA 59.403 57.895 12.86 3.18 0.00 4.37
317 318 0.036388 GATCGTTGTGAGGCTCCCAA 60.036 55.000 12.86 10.52 0.00 4.12
318 319 0.400213 ATCGTTGTGAGGCTCCCAAA 59.600 50.000 14.05 0.20 0.00 3.28
319 320 0.250295 TCGTTGTGAGGCTCCCAAAG 60.250 55.000 14.05 15.60 0.00 2.77
320 321 0.250295 CGTTGTGAGGCTCCCAAAGA 60.250 55.000 17.77 0.00 0.00 2.52
321 322 1.813862 CGTTGTGAGGCTCCCAAAGAA 60.814 52.381 17.77 0.00 0.00 2.52
322 323 1.882623 GTTGTGAGGCTCCCAAAGAAG 59.117 52.381 14.05 0.00 0.00 2.85
323 324 0.250901 TGTGAGGCTCCCAAAGAAGC 60.251 55.000 12.86 0.00 0.00 3.86
324 325 1.003355 TGAGGCTCCCAAAGAAGCG 60.003 57.895 12.86 0.00 0.00 4.68
325 326 2.360475 AGGCTCCCAAAGAAGCGC 60.360 61.111 0.00 0.00 0.00 5.92
326 327 2.360475 GGCTCCCAAAGAAGCGCT 60.360 61.111 2.64 2.64 0.00 5.92
327 328 1.973812 GGCTCCCAAAGAAGCGCTT 60.974 57.895 25.35 25.35 38.88 4.68
328 329 0.676782 GGCTCCCAAAGAAGCGCTTA 60.677 55.000 25.11 4.25 35.24 3.09
329 330 1.383523 GCTCCCAAAGAAGCGCTTAT 58.616 50.000 25.11 18.80 35.24 1.73
330 331 1.745653 GCTCCCAAAGAAGCGCTTATT 59.254 47.619 25.11 24.25 35.24 1.40
331 332 2.943033 GCTCCCAAAGAAGCGCTTATTA 59.057 45.455 28.42 13.26 35.24 0.98
332 333 3.377172 GCTCCCAAAGAAGCGCTTATTAA 59.623 43.478 28.42 14.17 35.24 1.40
333 334 4.730903 GCTCCCAAAGAAGCGCTTATTAAC 60.731 45.833 28.42 13.71 35.24 2.01
334 335 4.585879 TCCCAAAGAAGCGCTTATTAACT 58.414 39.130 28.42 15.82 35.24 2.24
335 336 5.736813 TCCCAAAGAAGCGCTTATTAACTA 58.263 37.500 28.42 13.21 35.24 2.24
336 337 5.815740 TCCCAAAGAAGCGCTTATTAACTAG 59.184 40.000 28.42 15.99 35.24 2.57
337 338 5.585047 CCCAAAGAAGCGCTTATTAACTAGT 59.415 40.000 28.42 10.64 35.24 2.57
338 339 6.093633 CCCAAAGAAGCGCTTATTAACTAGTT 59.906 38.462 28.42 13.68 35.24 2.24
339 340 6.961554 CCAAAGAAGCGCTTATTAACTAGTTG 59.038 38.462 28.42 20.03 35.24 3.16
340 341 5.720261 AGAAGCGCTTATTAACTAGTTGC 57.280 39.130 25.11 11.18 0.00 4.17
341 342 5.420409 AGAAGCGCTTATTAACTAGTTGCT 58.580 37.500 25.11 12.80 0.00 3.91
342 343 5.520649 AGAAGCGCTTATTAACTAGTTGCTC 59.479 40.000 25.11 4.40 0.00 4.26
343 344 4.120589 AGCGCTTATTAACTAGTTGCTCC 58.879 43.478 18.56 6.38 0.00 4.70
344 345 3.247886 GCGCTTATTAACTAGTTGCTCCC 59.752 47.826 18.56 1.78 0.00 4.30
433 438 1.057636 TTTCGTGTCGCTCGATCAAC 58.942 50.000 0.00 0.00 37.18 3.18
435 440 1.154016 CGTGTCGCTCGATCAACCT 60.154 57.895 0.00 0.00 0.00 3.50
447 452 4.278310 TCGATCAACCTCATGGAGTAGAA 58.722 43.478 0.00 0.00 37.04 2.10
459 464 5.354513 TCATGGAGTAGAACTAGTTCGTCAG 59.645 44.000 25.92 17.09 43.97 3.51
490 496 2.165030 TGAACCGTACTAGGCAAGTAGC 59.835 50.000 0.00 0.00 41.42 3.58
598 611 1.583054 AACCGTGAGTCTGCAGAAAC 58.417 50.000 20.19 15.77 0.00 2.78
600 613 1.139058 ACCGTGAGTCTGCAGAAACTT 59.861 47.619 20.19 4.38 0.00 2.66
671 684 4.219033 GCTTGTAACGTCAGGTCATTTTG 58.781 43.478 0.00 0.00 0.00 2.44
708 722 2.426023 ACGATAGGCAATCCCCGC 59.574 61.111 0.00 0.00 43.77 6.13
709 723 2.738521 CGATAGGCAATCCCCGCG 60.739 66.667 0.00 0.00 0.00 6.46
719 983 0.814010 AATCCCCGCGTGCAGATAAC 60.814 55.000 4.92 0.00 0.00 1.89
723 987 2.020016 CGCGTGCAGATAACGTGC 59.980 61.111 0.00 0.00 43.57 5.34
724 988 2.399611 GCGTGCAGATAACGTGCC 59.600 61.111 0.00 0.00 42.93 5.01
725 989 2.387445 GCGTGCAGATAACGTGCCA 61.387 57.895 0.00 0.00 42.93 4.92
726 990 1.419922 CGTGCAGATAACGTGCCAC 59.580 57.895 0.00 0.00 40.43 5.01
728 992 1.734377 CGTGCAGATAACGTGCCACTA 60.734 52.381 0.00 0.00 40.43 2.74
729 993 2.343101 GTGCAGATAACGTGCCACTAA 58.657 47.619 0.00 0.00 40.43 2.24
730 994 2.093783 GTGCAGATAACGTGCCACTAAC 59.906 50.000 0.00 0.00 40.43 2.34
731 995 1.664151 GCAGATAACGTGCCACTAACC 59.336 52.381 0.00 0.00 34.67 2.85
759 1044 1.663702 GGCAACGTCGCAGTAGTGT 60.664 57.895 0.00 0.00 0.00 3.55
760 1045 0.387622 GGCAACGTCGCAGTAGTGTA 60.388 55.000 0.00 0.00 0.00 2.90
816 1102 1.079405 GCCCGATTCTCCAACGTCA 60.079 57.895 0.00 0.00 0.00 4.35
916 1214 4.296690 ACTAACGTACTGAACTTGAGTGC 58.703 43.478 0.00 0.00 0.00 4.40
1019 1325 3.121030 CCCAGCAAGGAGAACGCG 61.121 66.667 3.53 3.53 41.22 6.01
1024 1330 3.423154 CAAGGAGAACGCGCACCC 61.423 66.667 5.73 2.13 0.00 4.61
1026 1332 3.178540 AAGGAGAACGCGCACCCTT 62.179 57.895 5.73 11.45 32.78 3.95
1027 1333 3.119096 GGAGAACGCGCACCCTTC 61.119 66.667 5.73 1.36 0.00 3.46
1028 1334 3.119096 GAGAACGCGCACCCTTCC 61.119 66.667 5.73 0.00 0.00 3.46
1042 1348 4.195416 CACCCTTCCTCTTCTTGATTAGC 58.805 47.826 0.00 0.00 0.00 3.09
1053 1359 2.057316 CTTGATTAGCTCAGCGATCGG 58.943 52.381 18.30 0.48 34.68 4.18
1493 1835 3.110178 GACGTGGAACCGAAGCCG 61.110 66.667 0.00 0.00 0.00 5.52
1526 1868 4.101448 CCCAAGGGTGAGGAGCCG 62.101 72.222 0.00 0.00 45.22 5.52
1679 2024 4.416738 GAGCTGCCACCACTCCCC 62.417 72.222 0.00 0.00 0.00 4.81
1766 2111 4.379243 CTGCCGCCACTTCCGACT 62.379 66.667 0.00 0.00 0.00 4.18
1768 2113 4.373116 GCCGCCACTTCCGACTGA 62.373 66.667 0.00 0.00 0.00 3.41
1779 2124 1.866015 TCCGACTGATGACCTTCCAT 58.134 50.000 0.00 0.00 0.00 3.41
1877 2222 3.849951 CCGCCACTGCCGTATCCT 61.850 66.667 0.00 0.00 0.00 3.24
1899 2244 1.133025 CGGAGCCAAAACCATGATCAC 59.867 52.381 0.00 0.00 0.00 3.06
1900 2245 2.450476 GGAGCCAAAACCATGATCACT 58.550 47.619 0.00 0.00 0.00 3.41
1958 2311 3.897239 TGTTTGAGTCCTGTGTCCATTT 58.103 40.909 0.00 0.00 0.00 2.32
2106 2475 5.523188 GTCTCTCAGATTGTCATGCCTTTAG 59.477 44.000 0.00 0.00 0.00 1.85
2108 2477 5.809001 TCTCAGATTGTCATGCCTTTAGTT 58.191 37.500 0.00 0.00 0.00 2.24
2110 2479 7.394016 TCTCAGATTGTCATGCCTTTAGTTAA 58.606 34.615 0.00 0.00 0.00 2.01
2111 2480 7.882791 TCTCAGATTGTCATGCCTTTAGTTAAA 59.117 33.333 0.00 0.00 0.00 1.52
2112 2481 7.816640 TCAGATTGTCATGCCTTTAGTTAAAC 58.183 34.615 0.00 0.00 0.00 2.01
2113 2482 7.029563 CAGATTGTCATGCCTTTAGTTAAACC 58.970 38.462 0.00 0.00 0.00 3.27
2114 2483 5.365403 TTGTCATGCCTTTAGTTAAACCG 57.635 39.130 0.00 0.00 0.00 4.44
2115 2484 3.189702 TGTCATGCCTTTAGTTAAACCGC 59.810 43.478 0.00 0.00 0.00 5.68
2154 2528 5.323900 CGTCATGCCTTTACTACAAACATG 58.676 41.667 0.00 0.00 35.81 3.21
2155 2529 5.095490 GTCATGCCTTTACTACAAACATGC 58.905 41.667 0.00 0.00 34.77 4.06
2156 2530 5.009631 TCATGCCTTTACTACAAACATGCT 58.990 37.500 0.00 0.00 34.77 3.79
2157 2531 5.123820 TCATGCCTTTACTACAAACATGCTC 59.876 40.000 0.00 0.00 34.77 4.26
2158 2532 3.756434 TGCCTTTACTACAAACATGCTCC 59.244 43.478 0.00 0.00 0.00 4.70
2159 2533 3.128764 GCCTTTACTACAAACATGCTCCC 59.871 47.826 0.00 0.00 0.00 4.30
2160 2534 4.589908 CCTTTACTACAAACATGCTCCCT 58.410 43.478 0.00 0.00 0.00 4.20
2161 2535 4.636206 CCTTTACTACAAACATGCTCCCTC 59.364 45.833 0.00 0.00 0.00 4.30
2162 2536 2.789409 ACTACAAACATGCTCCCTCC 57.211 50.000 0.00 0.00 0.00 4.30
2163 2537 2.269940 ACTACAAACATGCTCCCTCCT 58.730 47.619 0.00 0.00 0.00 3.69
2164 2538 2.644798 ACTACAAACATGCTCCCTCCTT 59.355 45.455 0.00 0.00 0.00 3.36
2165 2539 2.683211 ACAAACATGCTCCCTCCTTT 57.317 45.000 0.00 0.00 0.00 3.11
2166 2540 2.519013 ACAAACATGCTCCCTCCTTTC 58.481 47.619 0.00 0.00 0.00 2.62
2167 2541 1.821136 CAAACATGCTCCCTCCTTTCC 59.179 52.381 0.00 0.00 0.00 3.13
2168 2542 1.075601 AACATGCTCCCTCCTTTCCA 58.924 50.000 0.00 0.00 0.00 3.53
2169 2543 1.075601 ACATGCTCCCTCCTTTCCAA 58.924 50.000 0.00 0.00 0.00 3.53
2170 2544 1.428912 ACATGCTCCCTCCTTTCCAAA 59.571 47.619 0.00 0.00 0.00 3.28
2171 2545 2.158325 ACATGCTCCCTCCTTTCCAAAA 60.158 45.455 0.00 0.00 0.00 2.44
2172 2546 2.999185 TGCTCCCTCCTTTCCAAAAT 57.001 45.000 0.00 0.00 0.00 1.82
2173 2547 4.264352 ACATGCTCCCTCCTTTCCAAAATA 60.264 41.667 0.00 0.00 0.00 1.40
2174 2548 3.968265 TGCTCCCTCCTTTCCAAAATAG 58.032 45.455 0.00 0.00 0.00 1.73
2175 2549 3.591527 TGCTCCCTCCTTTCCAAAATAGA 59.408 43.478 0.00 0.00 0.00 1.98
2176 2550 4.230502 TGCTCCCTCCTTTCCAAAATAGAT 59.769 41.667 0.00 0.00 0.00 1.98
2177 2551 4.582240 GCTCCCTCCTTTCCAAAATAGATG 59.418 45.833 0.00 0.00 0.00 2.90
2178 2552 5.632427 GCTCCCTCCTTTCCAAAATAGATGA 60.632 44.000 0.00 0.00 0.00 2.92
2179 2553 5.755849 TCCCTCCTTTCCAAAATAGATGAC 58.244 41.667 0.00 0.00 0.00 3.06
2180 2554 4.889995 CCCTCCTTTCCAAAATAGATGACC 59.110 45.833 0.00 0.00 0.00 4.02
2181 2555 4.889995 CCTCCTTTCCAAAATAGATGACCC 59.110 45.833 0.00 0.00 0.00 4.46
2182 2556 5.509498 CTCCTTTCCAAAATAGATGACCCA 58.491 41.667 0.00 0.00 0.00 4.51
2183 2557 5.898120 TCCTTTCCAAAATAGATGACCCAA 58.102 37.500 0.00 0.00 0.00 4.12
2184 2558 5.951747 TCCTTTCCAAAATAGATGACCCAAG 59.048 40.000 0.00 0.00 0.00 3.61
2185 2559 5.716703 CCTTTCCAAAATAGATGACCCAAGT 59.283 40.000 0.00 0.00 0.00 3.16
2186 2560 6.211384 CCTTTCCAAAATAGATGACCCAAGTT 59.789 38.462 0.00 0.00 0.00 2.66
2187 2561 6.588719 TTCCAAAATAGATGACCCAAGTTG 57.411 37.500 0.00 0.00 0.00 3.16
2188 2562 5.886609 TCCAAAATAGATGACCCAAGTTGA 58.113 37.500 3.87 0.00 0.00 3.18
2189 2563 5.945784 TCCAAAATAGATGACCCAAGTTGAG 59.054 40.000 3.87 0.00 0.00 3.02
2190 2564 5.711976 CCAAAATAGATGACCCAAGTTGAGT 59.288 40.000 3.87 0.00 0.00 3.41
2191 2565 6.127897 CCAAAATAGATGACCCAAGTTGAGTC 60.128 42.308 10.39 10.39 0.00 3.36
2192 2566 5.762179 AATAGATGACCCAAGTTGAGTCA 57.238 39.130 20.75 20.75 44.11 3.41
2197 2571 5.965033 ATGACCCAAGTTGAGTCATCTAT 57.035 39.130 23.07 6.39 45.73 1.98
2198 2572 5.762179 TGACCCAAGTTGAGTCATCTATT 57.238 39.130 15.48 0.00 35.67 1.73
2199 2573 6.126863 TGACCCAAGTTGAGTCATCTATTT 57.873 37.500 15.48 0.00 35.67 1.40
2200 2574 6.173339 TGACCCAAGTTGAGTCATCTATTTC 58.827 40.000 15.48 1.06 35.67 2.17
2201 2575 6.126863 ACCCAAGTTGAGTCATCTATTTCA 57.873 37.500 3.87 0.00 0.00 2.69
2202 2576 6.176183 ACCCAAGTTGAGTCATCTATTTCAG 58.824 40.000 3.87 0.00 0.00 3.02
2203 2577 6.013379 ACCCAAGTTGAGTCATCTATTTCAGA 60.013 38.462 3.87 0.00 37.79 3.27
2204 2578 6.881065 CCCAAGTTGAGTCATCTATTTCAGAA 59.119 38.462 3.87 0.00 36.67 3.02
2205 2579 7.148340 CCCAAGTTGAGTCATCTATTTCAGAAC 60.148 40.741 3.87 0.00 36.67 3.01
2206 2580 7.412346 CCAAGTTGAGTCATCTATTTCAGAACG 60.412 40.741 3.87 0.00 36.67 3.95
2207 2581 6.102663 AGTTGAGTCATCTATTTCAGAACGG 58.897 40.000 1.70 0.00 36.67 4.44
2208 2582 5.914898 TGAGTCATCTATTTCAGAACGGA 57.085 39.130 0.00 0.00 36.67 4.69
2209 2583 5.895928 TGAGTCATCTATTTCAGAACGGAG 58.104 41.667 0.00 0.00 36.67 4.63
2210 2584 5.163509 TGAGTCATCTATTTCAGAACGGAGG 60.164 44.000 0.00 0.00 36.67 4.30
2211 2585 4.100189 AGTCATCTATTTCAGAACGGAGGG 59.900 45.833 0.00 0.00 36.67 4.30
2212 2586 4.099573 GTCATCTATTTCAGAACGGAGGGA 59.900 45.833 0.00 0.00 36.67 4.20
2213 2587 4.342378 TCATCTATTTCAGAACGGAGGGAG 59.658 45.833 0.00 0.00 36.67 4.30
2214 2588 3.709587 TCTATTTCAGAACGGAGGGAGT 58.290 45.455 0.00 0.00 0.00 3.85
2218 2592 2.599408 TCAGAACGGAGGGAGTACTT 57.401 50.000 0.00 0.00 0.00 2.24
2225 2599 6.040616 CAGAACGGAGGGAGTACTTATGTAAT 59.959 42.308 0.00 0.00 0.00 1.89
2235 2609 7.767198 GGGAGTACTTATGTAATAGTTGTTGCA 59.233 37.037 0.00 0.00 0.00 4.08
2254 2628 0.403271 AAACTGAGCACCAGATGGCT 59.597 50.000 12.27 0.00 45.78 4.75
2267 2641 0.747255 GATGGCTAGGTCTCTTGCGA 59.253 55.000 0.00 0.00 41.52 5.10
2269 2643 0.747255 TGGCTAGGTCTCTTGCGATC 59.253 55.000 0.00 0.00 41.52 3.69
2279 2653 1.129998 CTCTTGCGATCAAACCTGCAG 59.870 52.381 6.78 6.78 38.75 4.41
2354 2728 5.464965 TTTCAGGCTTTTCGACGATATTC 57.535 39.130 0.00 0.00 0.00 1.75
2362 2737 6.358030 GGCTTTTCGACGATATTCATTCAATG 59.642 38.462 0.00 0.00 0.00 2.82
2388 2763 1.472026 GCATGCCCATCAACCATGAAC 60.472 52.381 6.36 0.00 39.49 3.18
2461 2838 8.623903 CCTTGATTCGAAGGATTTTCATATGAA 58.376 33.333 14.23 14.23 44.87 2.57
2469 2846 9.585099 CGAAGGATTTTCATATGAATTTTGGAA 57.415 29.630 18.61 9.37 33.54 3.53
2633 3012 4.142790 AGAATTGAGATGGGCATGACATC 58.857 43.478 18.02 18.02 43.87 3.06
2681 3060 4.176271 GCGCTTTTAGAATCCTGCAAATT 58.824 39.130 0.00 0.00 0.00 1.82
2687 3066 9.591792 GCTTTTAGAATCCTGCAAATTAAAGAT 57.408 29.630 13.94 0.00 0.00 2.40
2694 3073 3.489738 CCTGCAAATTAAAGATGCCCTCG 60.490 47.826 7.69 0.00 39.31 4.63
2704 3083 3.713826 AGATGCCCTCGGTCTTTTAAA 57.286 42.857 0.00 0.00 0.00 1.52
2710 3089 3.056821 GCCCTCGGTCTTTTAAAATGCTT 60.057 43.478 0.09 0.00 0.00 3.91
2715 3094 7.282450 CCCTCGGTCTTTTAAAATGCTTATAGT 59.718 37.037 0.09 0.00 0.00 2.12
2733 3112 1.339929 AGTGATAGCGTGTGTGTGTGA 59.660 47.619 0.00 0.00 0.00 3.58
2734 3113 2.131972 GTGATAGCGTGTGTGTGTGAA 58.868 47.619 0.00 0.00 0.00 3.18
2735 3114 2.736721 GTGATAGCGTGTGTGTGTGAAT 59.263 45.455 0.00 0.00 0.00 2.57
2737 3116 2.232756 TAGCGTGTGTGTGTGAATGT 57.767 45.000 0.00 0.00 0.00 2.71
2738 3117 0.937304 AGCGTGTGTGTGTGAATGTC 59.063 50.000 0.00 0.00 0.00 3.06
2739 3118 0.937304 GCGTGTGTGTGTGAATGTCT 59.063 50.000 0.00 0.00 0.00 3.41
2740 3119 1.333169 GCGTGTGTGTGTGAATGTCTG 60.333 52.381 0.00 0.00 0.00 3.51
2741 3120 1.333169 CGTGTGTGTGTGAATGTCTGC 60.333 52.381 0.00 0.00 0.00 4.26
2742 3121 1.670295 GTGTGTGTGTGAATGTCTGCA 59.330 47.619 0.00 0.00 0.00 4.41
2744 3123 2.950975 TGTGTGTGTGAATGTCTGCATT 59.049 40.909 0.00 0.00 46.99 3.56
2745 3124 4.024133 GTGTGTGTGTGAATGTCTGCATTA 60.024 41.667 0.00 0.00 44.61 1.90
2746 3125 4.761227 TGTGTGTGTGAATGTCTGCATTAT 59.239 37.500 0.00 0.00 44.61 1.28
2748 3127 5.570206 GTGTGTGTGAATGTCTGCATTATTG 59.430 40.000 0.00 0.00 44.61 1.90
2751 3130 5.472820 TGTGTGAATGTCTGCATTATTGTGA 59.527 36.000 0.00 0.00 44.61 3.58
2755 3134 7.121611 TGTGAATGTCTGCATTATTGTGATTCT 59.878 33.333 0.00 0.00 44.61 2.40
2788 3175 2.683211 ACAATTGTCTCCCAAAGCCT 57.317 45.000 4.92 0.00 36.44 4.58
2789 3176 3.806949 ACAATTGTCTCCCAAAGCCTA 57.193 42.857 4.92 0.00 36.44 3.93
2797 3184 3.253432 GTCTCCCAAAGCCTAAACAGTTG 59.747 47.826 0.00 0.00 0.00 3.16
2799 3186 1.686052 CCCAAAGCCTAAACAGTTGCA 59.314 47.619 0.00 0.00 0.00 4.08
2860 3247 2.715536 AAAAAGAAAGGGCGACGCT 58.284 47.368 20.77 0.00 0.00 5.07
2861 3248 1.886886 AAAAAGAAAGGGCGACGCTA 58.113 45.000 20.77 0.00 0.00 4.26
2862 3249 1.154197 AAAAGAAAGGGCGACGCTAC 58.846 50.000 20.77 13.11 0.00 3.58
2863 3250 1.012486 AAAGAAAGGGCGACGCTACG 61.012 55.000 20.77 0.00 0.00 3.51
2885 3272 2.549282 CGCCGGCGGATTATTTCG 59.451 61.111 40.50 18.12 35.56 3.46
2886 3273 1.952133 CGCCGGCGGATTATTTCGA 60.952 57.895 40.50 0.00 35.56 3.71
2887 3274 1.492319 CGCCGGCGGATTATTTCGAA 61.492 55.000 40.50 0.00 35.56 3.71
2888 3275 0.658897 GCCGGCGGATTATTTCGAAA 59.341 50.000 33.44 13.91 0.00 3.46
2889 3276 1.333791 GCCGGCGGATTATTTCGAAAG 60.334 52.381 33.44 2.53 0.00 2.62
2890 3277 2.206750 CCGGCGGATTATTTCGAAAGA 58.793 47.619 24.41 9.14 39.20 2.52
2891 3278 2.806244 CCGGCGGATTATTTCGAAAGAT 59.194 45.455 24.41 12.32 41.60 2.40
2892 3279 3.120649 CCGGCGGATTATTTCGAAAGATC 60.121 47.826 24.41 19.07 41.60 2.75
2893 3280 3.120649 CGGCGGATTATTTCGAAAGATCC 60.121 47.826 29.02 29.02 41.60 3.36
2894 3281 3.813166 GGCGGATTATTTCGAAAGATCCA 59.187 43.478 33.10 14.37 41.60 3.41
2895 3282 4.319549 GGCGGATTATTTCGAAAGATCCAC 60.320 45.833 33.10 28.29 41.60 4.02
2896 3283 4.319549 GCGGATTATTTCGAAAGATCCACC 60.320 45.833 33.10 25.48 41.60 4.61
2897 3284 4.814234 CGGATTATTTCGAAAGATCCACCA 59.186 41.667 33.10 13.24 41.60 4.17
2898 3285 5.277345 CGGATTATTTCGAAAGATCCACCAC 60.277 44.000 33.10 18.86 41.60 4.16
2899 3286 5.008712 GGATTATTTCGAAAGATCCACCACC 59.991 44.000 31.42 16.43 41.60 4.61
2900 3287 3.721087 ATTTCGAAAGATCCACCACCT 57.279 42.857 16.80 0.00 41.60 4.00
2901 3288 3.502123 TTTCGAAAGATCCACCACCTT 57.498 42.857 6.47 0.00 41.60 3.50
2902 3289 4.627284 TTTCGAAAGATCCACCACCTTA 57.373 40.909 6.47 0.00 41.60 2.69
2903 3290 4.627284 TTCGAAAGATCCACCACCTTAA 57.373 40.909 0.00 0.00 41.60 1.85
2904 3291 3.934068 TCGAAAGATCCACCACCTTAAC 58.066 45.455 0.00 0.00 33.31 2.01
2905 3292 3.325425 TCGAAAGATCCACCACCTTAACA 59.675 43.478 0.00 0.00 33.31 2.41
2906 3293 3.684788 CGAAAGATCCACCACCTTAACAG 59.315 47.826 0.00 0.00 0.00 3.16
2907 3294 2.789409 AGATCCACCACCTTAACAGC 57.211 50.000 0.00 0.00 0.00 4.40
2908 3295 2.269940 AGATCCACCACCTTAACAGCT 58.730 47.619 0.00 0.00 0.00 4.24
2909 3296 2.026822 AGATCCACCACCTTAACAGCTG 60.027 50.000 13.48 13.48 0.00 4.24
2910 3297 1.136828 TCCACCACCTTAACAGCTGT 58.863 50.000 15.25 15.25 0.00 4.40
2911 3298 1.493022 TCCACCACCTTAACAGCTGTT 59.507 47.619 32.97 32.97 41.73 3.16
2912 3299 2.092103 TCCACCACCTTAACAGCTGTTT 60.092 45.455 35.20 19.78 39.31 2.83
2913 3300 2.034558 CCACCACCTTAACAGCTGTTTG 59.965 50.000 35.20 25.77 39.31 2.93
2914 3301 2.948979 CACCACCTTAACAGCTGTTTGA 59.051 45.455 35.20 22.73 39.31 2.69
2915 3302 3.569701 CACCACCTTAACAGCTGTTTGAT 59.430 43.478 35.20 13.70 39.31 2.57
2916 3303 3.821033 ACCACCTTAACAGCTGTTTGATC 59.179 43.478 35.20 0.00 39.31 2.92
2917 3304 3.191371 CCACCTTAACAGCTGTTTGATCC 59.809 47.826 35.20 0.00 39.31 3.36
2918 3305 3.074412 ACCTTAACAGCTGTTTGATCCG 58.926 45.455 35.20 18.89 39.31 4.18
2919 3306 2.420022 CCTTAACAGCTGTTTGATCCGG 59.580 50.000 35.20 21.12 39.31 5.14
2920 3307 1.448985 TAACAGCTGTTTGATCCGGC 58.551 50.000 35.20 0.00 39.31 6.13
2921 3308 1.577328 AACAGCTGTTTGATCCGGCG 61.577 55.000 26.36 0.00 39.23 6.46
2922 3309 3.127533 AGCTGTTTGATCCGGCGC 61.128 61.111 0.00 0.00 39.23 6.53
2923 3310 3.430862 GCTGTTTGATCCGGCGCA 61.431 61.111 10.83 0.00 0.00 6.09
2924 3311 2.764314 GCTGTTTGATCCGGCGCAT 61.764 57.895 10.83 0.00 0.00 4.73
2925 3312 1.353103 CTGTTTGATCCGGCGCATC 59.647 57.895 10.83 3.31 0.00 3.91
2926 3313 2.051804 CTGTTTGATCCGGCGCATCC 62.052 60.000 10.83 0.00 0.00 3.51
2927 3314 2.112198 GTTTGATCCGGCGCATCCA 61.112 57.895 10.83 0.00 34.01 3.41
2928 3315 1.152984 TTTGATCCGGCGCATCCAT 60.153 52.632 10.83 0.00 34.01 3.41
2929 3316 1.165907 TTTGATCCGGCGCATCCATC 61.166 55.000 10.83 5.31 34.01 3.51
2930 3317 3.114616 GATCCGGCGCATCCATCG 61.115 66.667 10.83 1.30 34.01 3.84
2931 3318 4.687215 ATCCGGCGCATCCATCGG 62.687 66.667 10.83 12.39 43.42 4.18
2939 3326 4.996434 CATCCATCGGCCCGGCTC 62.996 72.222 9.86 0.00 0.00 4.70
2942 3329 4.489771 CCATCGGCCCGGCTCTTT 62.490 66.667 9.86 0.00 0.00 2.52
2943 3330 2.897350 CATCGGCCCGGCTCTTTC 60.897 66.667 9.86 0.00 0.00 2.62
2944 3331 4.176752 ATCGGCCCGGCTCTTTCC 62.177 66.667 9.86 0.00 0.00 3.13
2946 3333 4.840005 CGGCCCGGCTCTTTCCTC 62.840 72.222 9.86 0.00 0.00 3.71
2947 3334 3.717294 GGCCCGGCTCTTTCCTCA 61.717 66.667 9.86 0.00 0.00 3.86
2948 3335 2.592308 GCCCGGCTCTTTCCTCAT 59.408 61.111 0.71 0.00 0.00 2.90
2949 3336 1.696097 GGCCCGGCTCTTTCCTCATA 61.696 60.000 9.86 0.00 0.00 2.15
2950 3337 0.180406 GCCCGGCTCTTTCCTCATAA 59.820 55.000 0.71 0.00 0.00 1.90
2951 3338 1.202818 GCCCGGCTCTTTCCTCATAAT 60.203 52.381 0.71 0.00 0.00 1.28
2952 3339 2.749800 GCCCGGCTCTTTCCTCATAATT 60.750 50.000 0.71 0.00 0.00 1.40
2953 3340 2.880890 CCCGGCTCTTTCCTCATAATTG 59.119 50.000 0.00 0.00 0.00 2.32
2954 3341 2.291741 CCGGCTCTTTCCTCATAATTGC 59.708 50.000 0.00 0.00 0.00 3.56
2955 3342 2.945008 CGGCTCTTTCCTCATAATTGCA 59.055 45.455 0.00 0.00 0.00 4.08
2956 3343 3.378112 CGGCTCTTTCCTCATAATTGCAA 59.622 43.478 0.00 0.00 0.00 4.08
2957 3344 4.676546 GGCTCTTTCCTCATAATTGCAAC 58.323 43.478 0.00 0.00 0.00 4.17
2958 3345 4.158394 GGCTCTTTCCTCATAATTGCAACA 59.842 41.667 0.00 0.00 0.00 3.33
2959 3346 5.336690 GGCTCTTTCCTCATAATTGCAACAA 60.337 40.000 0.00 0.00 0.00 2.83
2960 3347 6.158598 GCTCTTTCCTCATAATTGCAACAAA 58.841 36.000 0.00 0.00 0.00 2.83
2961 3348 6.309737 GCTCTTTCCTCATAATTGCAACAAAG 59.690 38.462 0.00 1.08 0.00 2.77
2962 3349 6.690530 TCTTTCCTCATAATTGCAACAAAGG 58.309 36.000 0.00 5.08 0.00 3.11
2963 3350 4.454728 TCCTCATAATTGCAACAAAGGC 57.545 40.909 0.00 0.00 0.00 4.35
2964 3351 3.831333 TCCTCATAATTGCAACAAAGGCA 59.169 39.130 0.00 0.00 40.00 4.75
2965 3352 4.082081 TCCTCATAATTGCAACAAAGGCAG 60.082 41.667 0.00 0.00 43.05 4.85
2966 3353 4.322198 CCTCATAATTGCAACAAAGGCAGT 60.322 41.667 0.00 0.00 43.05 4.40
2967 3354 4.558178 TCATAATTGCAACAAAGGCAGTG 58.442 39.130 0.00 0.00 43.05 3.66
2968 3355 2.985957 AATTGCAACAAAGGCAGTGT 57.014 40.000 0.00 0.00 43.05 3.55
2969 3356 2.985957 ATTGCAACAAAGGCAGTGTT 57.014 40.000 0.00 0.45 43.05 3.32
2979 3366 2.713154 GCAGTGTTGCGAAACCGT 59.287 55.556 3.18 0.00 41.13 4.83
2980 3367 1.063488 GCAGTGTTGCGAAACCGTT 59.937 52.632 3.18 0.00 41.13 4.44
2981 3368 0.524604 GCAGTGTTGCGAAACCGTTT 60.525 50.000 3.18 0.00 41.13 3.60
2982 3369 1.187715 CAGTGTTGCGAAACCGTTTG 58.812 50.000 3.18 0.00 0.00 2.93
2983 3370 0.524604 AGTGTTGCGAAACCGTTTGC 60.525 50.000 3.18 6.39 43.55 3.68
2987 3374 4.626225 GCGAAACCGTTTGCACAT 57.374 50.000 0.00 0.00 42.88 3.21
2988 3375 3.757623 GCGAAACCGTTTGCACATA 57.242 47.368 0.00 0.00 42.88 2.29
2989 3376 2.256445 GCGAAACCGTTTGCACATAT 57.744 45.000 0.00 0.00 42.88 1.78
2990 3377 2.173964 GCGAAACCGTTTGCACATATC 58.826 47.619 0.00 0.00 42.88 1.63
2991 3378 2.159572 GCGAAACCGTTTGCACATATCT 60.160 45.455 0.00 0.00 42.88 1.98
2992 3379 3.670203 CGAAACCGTTTGCACATATCTC 58.330 45.455 0.00 0.00 0.00 2.75
2993 3380 3.670203 GAAACCGTTTGCACATATCTCG 58.330 45.455 0.00 0.00 0.00 4.04
2994 3381 2.380084 ACCGTTTGCACATATCTCGT 57.620 45.000 0.00 0.00 0.00 4.18
2995 3382 1.999735 ACCGTTTGCACATATCTCGTG 59.000 47.619 0.00 0.00 37.43 4.35
2996 3383 1.999735 CCGTTTGCACATATCTCGTGT 59.000 47.619 0.00 0.00 36.71 4.49
2997 3384 2.415168 CCGTTTGCACATATCTCGTGTT 59.585 45.455 0.00 0.00 36.71 3.32
2998 3385 3.407252 CGTTTGCACATATCTCGTGTTG 58.593 45.455 0.00 0.00 36.71 3.33
2999 3386 3.163594 GTTTGCACATATCTCGTGTTGC 58.836 45.455 0.00 0.00 36.71 4.17
3000 3387 0.998669 TGCACATATCTCGTGTTGCG 59.001 50.000 0.00 0.00 43.01 4.85
3001 3388 0.301687 GCACATATCTCGTGTTGCGG 59.698 55.000 0.00 0.00 41.72 5.69
3002 3389 1.921243 CACATATCTCGTGTTGCGGA 58.079 50.000 0.00 0.00 41.72 5.54
3003 3390 2.267426 CACATATCTCGTGTTGCGGAA 58.733 47.619 0.00 0.00 41.72 4.30
3004 3391 2.670905 CACATATCTCGTGTTGCGGAAA 59.329 45.455 0.00 0.00 41.72 3.13
3005 3392 2.671396 ACATATCTCGTGTTGCGGAAAC 59.329 45.455 0.00 0.00 41.72 2.78
3006 3393 2.736144 TATCTCGTGTTGCGGAAACT 57.264 45.000 0.00 0.00 39.70 2.66
3007 3394 1.878953 ATCTCGTGTTGCGGAAACTT 58.121 45.000 0.00 0.00 39.70 2.66
3008 3395 1.658994 TCTCGTGTTGCGGAAACTTT 58.341 45.000 0.00 0.00 39.70 2.66
3009 3396 2.011222 TCTCGTGTTGCGGAAACTTTT 58.989 42.857 0.00 0.00 39.70 2.27
3010 3397 2.108700 CTCGTGTTGCGGAAACTTTTG 58.891 47.619 0.00 0.00 39.70 2.44
3011 3398 0.570272 CGTGTTGCGGAAACTTTTGC 59.430 50.000 0.00 0.00 39.70 3.68
3012 3399 1.634702 GTGTTGCGGAAACTTTTGCA 58.365 45.000 0.00 0.00 39.70 4.08
3013 3400 1.996191 GTGTTGCGGAAACTTTTGCAA 59.004 42.857 0.00 0.00 44.34 4.08
3015 3402 2.370281 TTGCGGAAACTTTTGCAACA 57.630 40.000 0.00 0.00 41.95 3.33
3016 3403 2.370281 TGCGGAAACTTTTGCAACAA 57.630 40.000 0.00 0.00 33.80 2.83
3017 3404 2.688507 TGCGGAAACTTTTGCAACAAA 58.311 38.095 0.00 0.00 33.80 2.83
3018 3405 2.670414 TGCGGAAACTTTTGCAACAAAG 59.330 40.909 0.00 3.69 33.80 2.77
3019 3406 2.926838 GCGGAAACTTTTGCAACAAAGA 59.073 40.909 16.01 0.00 0.00 2.52
3020 3407 3.555547 GCGGAAACTTTTGCAACAAAGAT 59.444 39.130 16.01 3.25 0.00 2.40
3021 3408 4.033932 GCGGAAACTTTTGCAACAAAGATT 59.966 37.500 16.01 11.01 0.00 2.40
3022 3409 5.447144 GCGGAAACTTTTGCAACAAAGATTT 60.447 36.000 16.01 12.12 0.00 2.17
3023 3410 6.541969 CGGAAACTTTTGCAACAAAGATTTT 58.458 32.000 16.01 8.09 0.00 1.82
3024 3411 6.465465 CGGAAACTTTTGCAACAAAGATTTTG 59.535 34.615 16.01 5.36 0.00 2.44
3025 3412 7.304735 GGAAACTTTTGCAACAAAGATTTTGT 58.695 30.769 16.01 1.55 0.00 2.83
3026 3413 7.807433 GGAAACTTTTGCAACAAAGATTTTGTT 59.193 29.630 16.01 12.70 42.75 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.826725 GAGTATATCGACCAGAAGGGGG 59.173 54.545 0.00 0.00 42.91 5.40
4 5 3.759618 GAGAGTATATCGACCAGAAGGGG 59.240 52.174 0.00 0.00 42.91 4.79
5 6 3.437395 CGAGAGTATATCGACCAGAAGGG 59.563 52.174 0.00 0.00 42.76 3.95
6 7 3.437395 CCGAGAGTATATCGACCAGAAGG 59.563 52.174 0.00 0.00 42.76 3.46
7 8 4.066490 ACCGAGAGTATATCGACCAGAAG 58.934 47.826 0.00 0.00 42.76 2.85
8 9 4.063689 GACCGAGAGTATATCGACCAGAA 58.936 47.826 0.00 0.00 42.76 3.02
9 10 3.556633 GGACCGAGAGTATATCGACCAGA 60.557 52.174 0.00 0.00 42.76 3.86
10 11 2.743126 GGACCGAGAGTATATCGACCAG 59.257 54.545 0.00 0.00 42.76 4.00
11 12 2.371179 AGGACCGAGAGTATATCGACCA 59.629 50.000 0.00 0.00 42.76 4.02
12 13 3.056588 AGGACCGAGAGTATATCGACC 57.943 52.381 0.00 0.00 42.76 4.79
13 14 4.993584 TGTTAGGACCGAGAGTATATCGAC 59.006 45.833 0.00 0.00 42.76 4.20
14 15 5.219343 TGTTAGGACCGAGAGTATATCGA 57.781 43.478 0.00 0.00 42.76 3.59
15 16 5.614231 CGTTGTTAGGACCGAGAGTATATCG 60.614 48.000 0.00 0.00 39.86 2.92
16 17 5.334724 CCGTTGTTAGGACCGAGAGTATATC 60.335 48.000 0.00 0.00 0.00 1.63
17 18 4.518211 CCGTTGTTAGGACCGAGAGTATAT 59.482 45.833 0.00 0.00 0.00 0.86
18 19 3.879295 CCGTTGTTAGGACCGAGAGTATA 59.121 47.826 0.00 0.00 0.00 1.47
19 20 2.686915 CCGTTGTTAGGACCGAGAGTAT 59.313 50.000 0.00 0.00 0.00 2.12
20 21 2.086869 CCGTTGTTAGGACCGAGAGTA 58.913 52.381 0.00 0.00 0.00 2.59
21 22 0.886563 CCGTTGTTAGGACCGAGAGT 59.113 55.000 0.00 0.00 0.00 3.24
22 23 0.458025 GCCGTTGTTAGGACCGAGAG 60.458 60.000 0.00 0.00 0.00 3.20
23 24 1.588082 GCCGTTGTTAGGACCGAGA 59.412 57.895 0.00 0.00 0.00 4.04
24 25 1.447314 GGCCGTTGTTAGGACCGAG 60.447 63.158 0.00 0.00 0.00 4.63
25 26 2.658422 GGCCGTTGTTAGGACCGA 59.342 61.111 0.00 0.00 0.00 4.69
26 27 2.812178 CGGCCGTTGTTAGGACCG 60.812 66.667 19.50 0.00 40.17 4.79
27 28 2.030958 CACGGCCGTTGTTAGGACC 61.031 63.158 32.11 0.00 31.53 4.46
28 29 1.005867 TCACGGCCGTTGTTAGGAC 60.006 57.895 32.11 0.00 0.00 3.85
29 30 1.005867 GTCACGGCCGTTGTTAGGA 60.006 57.895 32.11 19.44 0.00 2.94
30 31 0.601841 AAGTCACGGCCGTTGTTAGG 60.602 55.000 32.11 17.08 0.00 2.69
31 32 1.070175 CAAAGTCACGGCCGTTGTTAG 60.070 52.381 32.11 17.93 0.00 2.34
32 33 0.938713 CAAAGTCACGGCCGTTGTTA 59.061 50.000 32.11 12.01 0.00 2.41
33 34 1.720694 CCAAAGTCACGGCCGTTGTT 61.721 55.000 32.11 19.27 0.00 2.83
34 35 2.184167 CCAAAGTCACGGCCGTTGT 61.184 57.895 32.11 13.63 0.00 3.32
35 36 2.637025 CCAAAGTCACGGCCGTTG 59.363 61.111 32.11 23.87 0.00 4.10
36 37 3.284449 GCCAAAGTCACGGCCGTT 61.284 61.111 32.11 12.67 42.82 4.44
39 40 2.458006 CTTTCGCCAAAGTCACGGCC 62.458 60.000 0.00 0.00 46.04 6.13
40 41 1.082104 CTTTCGCCAAAGTCACGGC 60.082 57.895 0.00 0.00 45.28 5.68
41 42 1.082104 GCTTTCGCCAAAGTCACGG 60.082 57.895 5.68 0.00 41.18 4.94
42 43 0.028770 TTGCTTTCGCCAAAGTCACG 59.971 50.000 5.68 0.00 41.18 4.35
43 44 2.202295 TTTGCTTTCGCCAAAGTCAC 57.798 45.000 5.68 0.00 41.18 3.67
44 45 2.949451 TTTTGCTTTCGCCAAAGTCA 57.051 40.000 5.68 1.86 41.18 3.41
45 46 2.405025 CGATTTTGCTTTCGCCAAAGTC 59.595 45.455 5.68 2.45 41.18 3.01
46 47 2.223711 ACGATTTTGCTTTCGCCAAAGT 60.224 40.909 5.68 0.00 41.18 2.66
47 48 2.153627 CACGATTTTGCTTTCGCCAAAG 59.846 45.455 0.00 0.00 41.92 2.77
48 49 2.123342 CACGATTTTGCTTTCGCCAAA 58.877 42.857 0.00 0.00 38.91 3.28
49 50 1.764851 CACGATTTTGCTTTCGCCAA 58.235 45.000 0.00 0.00 38.91 4.52
50 51 0.662970 GCACGATTTTGCTTTCGCCA 60.663 50.000 0.00 0.00 39.59 5.69
51 52 1.344226 GGCACGATTTTGCTTTCGCC 61.344 55.000 0.00 0.00 42.56 5.54
52 53 0.387239 AGGCACGATTTTGCTTTCGC 60.387 50.000 0.00 0.00 42.56 4.70
53 54 1.197721 AGAGGCACGATTTTGCTTTCG 59.802 47.619 0.00 0.00 42.56 3.46
54 55 2.726066 CGAGAGGCACGATTTTGCTTTC 60.726 50.000 0.00 0.00 42.56 2.62
55 56 1.197721 CGAGAGGCACGATTTTGCTTT 59.802 47.619 0.00 0.00 42.56 3.51
56 57 0.798776 CGAGAGGCACGATTTTGCTT 59.201 50.000 0.00 0.00 42.56 3.91
57 58 1.639298 GCGAGAGGCACGATTTTGCT 61.639 55.000 0.00 0.00 42.56 3.91
58 59 1.226128 GCGAGAGGCACGATTTTGC 60.226 57.895 0.00 0.00 42.87 3.68
59 60 1.059369 CGCGAGAGGCACGATTTTG 59.941 57.895 0.00 0.00 43.84 2.44
60 61 0.669318 TTCGCGAGAGGCACGATTTT 60.669 50.000 9.59 0.00 43.84 1.82
61 62 0.669318 TTTCGCGAGAGGCACGATTT 60.669 50.000 9.59 0.00 43.84 2.17
62 63 1.078759 CTTTCGCGAGAGGCACGATT 61.079 55.000 18.35 0.00 43.84 3.34
63 64 1.517257 CTTTCGCGAGAGGCACGAT 60.517 57.895 18.35 0.00 43.84 3.73
64 65 2.126463 CTTTCGCGAGAGGCACGA 60.126 61.111 18.35 0.00 43.84 4.35
65 66 2.867333 TAGCTTTCGCGAGAGGCACG 62.867 60.000 25.84 3.72 43.84 5.34
66 67 0.736325 TTAGCTTTCGCGAGAGGCAC 60.736 55.000 25.84 11.11 43.84 5.01
67 68 0.175760 ATTAGCTTTCGCGAGAGGCA 59.824 50.000 25.84 9.89 43.84 4.75
68 69 0.579156 CATTAGCTTTCGCGAGAGGC 59.421 55.000 25.84 21.49 43.69 4.70
69 70 0.579156 GCATTAGCTTTCGCGAGAGG 59.421 55.000 25.84 13.55 42.32 3.69
70 71 1.280982 TGCATTAGCTTTCGCGAGAG 58.719 50.000 21.42 21.42 41.35 3.20
71 72 1.939974 ATGCATTAGCTTTCGCGAGA 58.060 45.000 9.59 3.35 42.74 4.04
72 73 3.246226 AGTTATGCATTAGCTTTCGCGAG 59.754 43.478 9.59 0.00 42.74 5.03
73 74 3.194861 AGTTATGCATTAGCTTTCGCGA 58.805 40.909 3.71 3.71 42.74 5.87
74 75 3.246226 AGAGTTATGCATTAGCTTTCGCG 59.754 43.478 3.54 0.00 42.74 5.87
75 76 4.607114 CGAGAGTTATGCATTAGCTTTCGC 60.607 45.833 3.54 0.00 38.35 4.70
76 77 4.504461 ACGAGAGTTATGCATTAGCTTTCG 59.496 41.667 23.10 23.10 46.40 3.46
77 78 5.520288 TCACGAGAGTTATGCATTAGCTTTC 59.480 40.000 3.54 5.07 46.40 2.62
78 79 5.419542 TCACGAGAGTTATGCATTAGCTTT 58.580 37.500 3.54 0.00 46.40 3.51
79 80 5.011090 TCACGAGAGTTATGCATTAGCTT 57.989 39.130 3.54 0.00 46.40 3.74
80 81 4.655762 TCACGAGAGTTATGCATTAGCT 57.344 40.909 3.54 0.20 46.40 3.32
81 82 5.520288 TCTTTCACGAGAGTTATGCATTAGC 59.480 40.000 3.54 0.00 46.40 3.09
82 83 7.525688 TTCTTTCACGAGAGTTATGCATTAG 57.474 36.000 3.54 0.00 46.40 1.73
83 84 7.899178 TTTCTTTCACGAGAGTTATGCATTA 57.101 32.000 3.54 0.00 46.40 1.90
84 85 6.801539 TTTCTTTCACGAGAGTTATGCATT 57.198 33.333 3.54 0.00 46.40 3.56
85 86 6.801539 TTTTCTTTCACGAGAGTTATGCAT 57.198 33.333 3.79 3.79 46.40 3.96
86 87 6.612247 TTTTTCTTTCACGAGAGTTATGCA 57.388 33.333 0.00 0.00 46.40 3.96
140 141 9.594478 GGTCTTCTTTAGTTTTTGGATCAAAAA 57.406 29.630 12.69 12.69 46.57 1.94
141 142 7.918562 CGGTCTTCTTTAGTTTTTGGATCAAAA 59.081 33.333 0.00 0.00 40.85 2.44
142 143 7.422399 CGGTCTTCTTTAGTTTTTGGATCAAA 58.578 34.615 0.00 0.00 0.00 2.69
143 144 6.016610 CCGGTCTTCTTTAGTTTTTGGATCAA 60.017 38.462 0.00 0.00 0.00 2.57
144 145 5.472137 CCGGTCTTCTTTAGTTTTTGGATCA 59.528 40.000 0.00 0.00 0.00 2.92
145 146 5.472478 ACCGGTCTTCTTTAGTTTTTGGATC 59.528 40.000 0.00 0.00 0.00 3.36
146 147 5.240844 CACCGGTCTTCTTTAGTTTTTGGAT 59.759 40.000 2.59 0.00 0.00 3.41
147 148 4.577283 CACCGGTCTTCTTTAGTTTTTGGA 59.423 41.667 2.59 0.00 0.00 3.53
148 149 4.261447 CCACCGGTCTTCTTTAGTTTTTGG 60.261 45.833 2.59 0.00 0.00 3.28
149 150 4.577283 TCCACCGGTCTTCTTTAGTTTTTG 59.423 41.667 2.59 0.00 0.00 2.44
150 151 4.784177 TCCACCGGTCTTCTTTAGTTTTT 58.216 39.130 2.59 0.00 0.00 1.94
151 152 4.426736 TCCACCGGTCTTCTTTAGTTTT 57.573 40.909 2.59 0.00 0.00 2.43
152 153 4.426736 TTCCACCGGTCTTCTTTAGTTT 57.573 40.909 2.59 0.00 0.00 2.66
153 154 4.426736 TTTCCACCGGTCTTCTTTAGTT 57.573 40.909 2.59 0.00 0.00 2.24
154 155 4.132336 GTTTTCCACCGGTCTTCTTTAGT 58.868 43.478 2.59 0.00 0.00 2.24
155 156 3.501062 GGTTTTCCACCGGTCTTCTTTAG 59.499 47.826 2.59 0.00 40.31 1.85
156 157 3.479489 GGTTTTCCACCGGTCTTCTTTA 58.521 45.455 2.59 0.00 40.31 1.85
157 158 2.304092 GGTTTTCCACCGGTCTTCTTT 58.696 47.619 2.59 0.00 40.31 2.52
158 159 1.977056 GGTTTTCCACCGGTCTTCTT 58.023 50.000 2.59 0.00 40.31 2.52
159 160 3.719816 GGTTTTCCACCGGTCTTCT 57.280 52.632 2.59 0.00 40.31 2.85
196 197 6.188871 CGCTTTCGGCTTTTTAAACATTTTT 58.811 32.000 0.00 0.00 39.13 1.94
197 198 5.733299 CGCTTTCGGCTTTTTAAACATTTT 58.267 33.333 0.00 0.00 39.13 1.82
198 199 4.318475 GCGCTTTCGGCTTTTTAAACATTT 60.318 37.500 0.00 0.00 39.13 2.32
199 200 3.183574 GCGCTTTCGGCTTTTTAAACATT 59.816 39.130 0.00 0.00 39.13 2.71
200 201 2.729360 GCGCTTTCGGCTTTTTAAACAT 59.271 40.909 0.00 0.00 39.13 2.71
201 202 2.121009 GCGCTTTCGGCTTTTTAAACA 58.879 42.857 0.00 0.00 39.13 2.83
202 203 1.121789 CGCGCTTTCGGCTTTTTAAAC 59.878 47.619 5.56 0.00 39.13 2.01
203 204 1.268640 ACGCGCTTTCGGCTTTTTAAA 60.269 42.857 5.73 0.00 39.13 1.52
204 205 0.308376 ACGCGCTTTCGGCTTTTTAA 59.692 45.000 5.73 0.00 39.13 1.52
205 206 0.384974 CACGCGCTTTCGGCTTTTTA 60.385 50.000 5.73 0.00 39.13 1.52
206 207 1.657181 CACGCGCTTTCGGCTTTTT 60.657 52.632 5.73 0.00 39.13 1.94
207 208 2.051345 CACGCGCTTTCGGCTTTT 60.051 55.556 5.73 0.00 39.13 2.27
208 209 4.683334 GCACGCGCTTTCGGCTTT 62.683 61.111 5.73 0.00 39.13 3.51
212 213 3.645157 AATTCGCACGCGCTTTCGG 62.645 57.895 5.73 0.00 39.59 4.30
213 214 1.327292 AAAATTCGCACGCGCTTTCG 61.327 50.000 5.73 1.69 39.59 3.46
214 215 0.775861 AAAAATTCGCACGCGCTTTC 59.224 45.000 5.73 0.00 39.59 2.62
215 216 2.880091 AAAAATTCGCACGCGCTTT 58.120 42.105 5.73 6.29 39.59 3.51
216 217 4.626225 AAAAATTCGCACGCGCTT 57.374 44.444 5.73 0.00 39.59 4.68
235 236 1.302192 CTGGGCGTTTCCTTCGGAA 60.302 57.895 0.00 0.00 40.27 4.30
236 237 2.167398 CTCTGGGCGTTTCCTTCGGA 62.167 60.000 0.00 0.00 34.39 4.55
237 238 1.741770 CTCTGGGCGTTTCCTTCGG 60.742 63.158 0.00 0.00 34.39 4.30
238 239 2.391389 GCTCTGGGCGTTTCCTTCG 61.391 63.158 0.00 0.00 34.39 3.79
239 240 3.579685 GCTCTGGGCGTTTCCTTC 58.420 61.111 0.00 0.00 34.39 3.46
264 265 4.803426 CTCTCAGTCGCCCGCCAC 62.803 72.222 0.00 0.00 0.00 5.01
268 269 3.691744 GAGTGCTCTCAGTCGCCCG 62.692 68.421 10.86 0.00 40.18 6.13
269 270 2.183046 GAGTGCTCTCAGTCGCCC 59.817 66.667 10.86 0.00 40.18 6.13
270 271 2.183046 GGAGTGCTCTCAGTCGCC 59.817 66.667 17.04 0.00 42.29 5.54
271 272 1.153862 CTGGAGTGCTCTCAGTCGC 60.154 63.158 17.04 0.64 42.29 5.19
272 273 1.247419 ACCTGGAGTGCTCTCAGTCG 61.247 60.000 17.04 4.41 42.29 4.18
273 274 0.246086 CACCTGGAGTGCTCTCAGTC 59.754 60.000 17.04 1.33 40.28 3.51
274 275 1.190833 CCACCTGGAGTGCTCTCAGT 61.191 60.000 17.04 8.48 45.83 3.41
275 276 1.190833 ACCACCTGGAGTGCTCTCAG 61.191 60.000 17.04 11.72 45.83 3.35
276 277 1.152247 ACCACCTGGAGTGCTCTCA 60.152 57.895 17.04 3.46 45.83 3.27
277 278 1.294780 CACCACCTGGAGTGCTCTC 59.705 63.158 7.26 7.26 45.83 3.20
278 279 3.476386 CACCACCTGGAGTGCTCT 58.524 61.111 0.00 0.00 45.83 4.09
282 283 2.859273 GATCGGCACCACCTGGAGTG 62.859 65.000 14.54 14.54 46.83 3.51
283 284 2.607750 ATCGGCACCACCTGGAGT 60.608 61.111 0.00 0.00 38.94 3.85
284 285 2.187946 GATCGGCACCACCTGGAG 59.812 66.667 0.00 0.00 38.94 3.86
285 286 3.770040 CGATCGGCACCACCTGGA 61.770 66.667 7.38 0.00 38.94 3.86
286 287 3.605749 AACGATCGGCACCACCTGG 62.606 63.158 20.98 0.00 42.17 4.45
287 288 2.047274 AACGATCGGCACCACCTG 60.047 61.111 20.98 0.00 35.61 4.00
288 289 2.047274 CAACGATCGGCACCACCT 60.047 61.111 20.98 0.00 35.61 4.00
289 290 2.358247 ACAACGATCGGCACCACC 60.358 61.111 20.98 0.00 0.00 4.61
290 291 1.626654 CTCACAACGATCGGCACCAC 61.627 60.000 20.98 0.00 0.00 4.16
291 292 1.374125 CTCACAACGATCGGCACCA 60.374 57.895 20.98 0.00 0.00 4.17
292 293 2.100631 CCTCACAACGATCGGCACC 61.101 63.158 20.98 0.00 0.00 5.01
293 294 2.740714 GCCTCACAACGATCGGCAC 61.741 63.158 20.98 0.00 40.41 5.01
294 295 2.434185 GCCTCACAACGATCGGCA 60.434 61.111 20.98 0.00 40.41 5.69
295 296 2.125512 AGCCTCACAACGATCGGC 60.126 61.111 20.98 11.03 40.99 5.54
296 297 1.519455 GGAGCCTCACAACGATCGG 60.519 63.158 20.98 4.82 0.00 4.18
297 298 1.519455 GGGAGCCTCACAACGATCG 60.519 63.158 14.88 14.88 0.00 3.69
298 299 0.036388 TTGGGAGCCTCACAACGATC 60.036 55.000 5.00 0.00 34.34 3.69
299 300 0.400213 TTTGGGAGCCTCACAACGAT 59.600 50.000 9.37 0.00 39.89 3.73
300 301 0.250295 CTTTGGGAGCCTCACAACGA 60.250 55.000 9.37 0.00 39.89 3.85
301 302 0.250295 TCTTTGGGAGCCTCACAACG 60.250 55.000 9.37 7.98 39.89 4.10
302 303 1.882623 CTTCTTTGGGAGCCTCACAAC 59.117 52.381 9.37 0.00 39.89 3.32
303 304 1.819305 GCTTCTTTGGGAGCCTCACAA 60.819 52.381 5.00 5.00 38.14 3.33
304 305 0.250901 GCTTCTTTGGGAGCCTCACA 60.251 55.000 0.00 0.00 0.00 3.58
305 306 1.301677 CGCTTCTTTGGGAGCCTCAC 61.302 60.000 0.00 0.00 0.00 3.51
306 307 1.003355 CGCTTCTTTGGGAGCCTCA 60.003 57.895 0.00 0.00 0.00 3.86
307 308 2.402572 GCGCTTCTTTGGGAGCCTC 61.403 63.158 0.00 0.00 0.00 4.70
308 309 2.360475 GCGCTTCTTTGGGAGCCT 60.360 61.111 0.00 0.00 0.00 4.58
309 310 0.676782 TAAGCGCTTCTTTGGGAGCC 60.677 55.000 28.82 0.00 36.25 4.70
310 311 1.383523 ATAAGCGCTTCTTTGGGAGC 58.616 50.000 28.82 0.00 36.25 4.70
311 312 4.636206 AGTTAATAAGCGCTTCTTTGGGAG 59.364 41.667 28.82 0.00 36.25 4.30
312 313 4.585879 AGTTAATAAGCGCTTCTTTGGGA 58.414 39.130 28.82 7.58 36.25 4.37
313 314 4.965119 AGTTAATAAGCGCTTCTTTGGG 57.035 40.909 28.82 0.00 36.25 4.12
314 315 6.663944 ACTAGTTAATAAGCGCTTCTTTGG 57.336 37.500 28.82 12.48 36.25 3.28
315 316 6.466097 GCAACTAGTTAATAAGCGCTTCTTTG 59.534 38.462 28.82 18.25 36.25 2.77
316 317 6.371825 AGCAACTAGTTAATAAGCGCTTCTTT 59.628 34.615 28.82 22.56 36.25 2.52
317 318 5.875359 AGCAACTAGTTAATAAGCGCTTCTT 59.125 36.000 28.82 24.94 38.79 2.52
318 319 5.420409 AGCAACTAGTTAATAAGCGCTTCT 58.580 37.500 28.82 19.18 0.00 2.85
319 320 5.276915 GGAGCAACTAGTTAATAAGCGCTTC 60.277 44.000 28.82 12.14 0.00 3.86
320 321 4.571176 GGAGCAACTAGTTAATAAGCGCTT 59.429 41.667 27.97 27.97 0.00 4.68
321 322 4.120589 GGAGCAACTAGTTAATAAGCGCT 58.879 43.478 2.64 2.64 0.00 5.92
322 323 3.247886 GGGAGCAACTAGTTAATAAGCGC 59.752 47.826 8.04 8.78 0.00 5.92
323 324 4.270325 GTGGGAGCAACTAGTTAATAAGCG 59.730 45.833 8.04 0.00 0.00 4.68
324 325 4.270325 CGTGGGAGCAACTAGTTAATAAGC 59.730 45.833 8.04 7.28 0.00 3.09
325 326 5.416947 ACGTGGGAGCAACTAGTTAATAAG 58.583 41.667 8.04 0.00 0.00 1.73
326 327 5.410355 ACGTGGGAGCAACTAGTTAATAA 57.590 39.130 8.04 0.00 0.00 1.40
327 328 5.410355 AACGTGGGAGCAACTAGTTAATA 57.590 39.130 8.04 0.00 0.00 0.98
328 329 3.975168 ACGTGGGAGCAACTAGTTAAT 57.025 42.857 8.04 0.00 0.00 1.40
329 330 3.756933 AACGTGGGAGCAACTAGTTAA 57.243 42.857 8.04 0.00 0.00 2.01
330 331 3.756933 AAACGTGGGAGCAACTAGTTA 57.243 42.857 8.04 0.00 0.00 2.24
331 332 2.632987 AAACGTGGGAGCAACTAGTT 57.367 45.000 1.12 1.12 0.00 2.24
332 333 2.632987 AAAACGTGGGAGCAACTAGT 57.367 45.000 0.00 0.00 0.00 2.57
333 334 3.139077 AGAAAAACGTGGGAGCAACTAG 58.861 45.455 0.00 0.00 0.00 2.57
334 335 3.135994 GAGAAAAACGTGGGAGCAACTA 58.864 45.455 0.00 0.00 0.00 2.24
335 336 1.947456 GAGAAAAACGTGGGAGCAACT 59.053 47.619 0.00 0.00 0.00 3.16
336 337 1.673920 TGAGAAAAACGTGGGAGCAAC 59.326 47.619 0.00 0.00 0.00 4.17
337 338 2.045561 TGAGAAAAACGTGGGAGCAA 57.954 45.000 0.00 0.00 0.00 3.91
338 339 2.045561 TTGAGAAAAACGTGGGAGCA 57.954 45.000 0.00 0.00 0.00 4.26
339 340 3.430333 TTTTGAGAAAAACGTGGGAGC 57.570 42.857 0.00 0.00 0.00 4.70
433 438 4.641094 ACGAACTAGTTCTACTCCATGAGG 59.359 45.833 28.30 13.61 37.44 3.86
435 440 5.250982 TGACGAACTAGTTCTACTCCATGA 58.749 41.667 28.30 7.02 37.44 3.07
447 452 5.122869 TCACGCTTTATACTGACGAACTAGT 59.877 40.000 0.00 0.00 0.00 2.57
490 496 5.822519 TGCCATTGGTTGCTTATAAGACTAG 59.177 40.000 16.85 0.00 0.00 2.57
581 593 1.795286 GAAGTTTCTGCAGACTCACGG 59.205 52.381 18.03 0.00 0.00 4.94
598 611 4.576053 TCCATGGATTTATTGCGACAGAAG 59.424 41.667 11.44 0.00 0.00 2.85
600 613 4.149511 TCCATGGATTTATTGCGACAGA 57.850 40.909 11.44 0.00 0.00 3.41
706 720 2.020016 GCACGTTATCTGCACGCG 59.980 61.111 3.53 3.53 41.53 6.01
707 721 2.387445 TGGCACGTTATCTGCACGC 61.387 57.895 0.00 0.00 41.53 5.34
708 722 1.014044 AGTGGCACGTTATCTGCACG 61.014 55.000 12.71 0.00 43.52 5.34
709 723 2.004583 TAGTGGCACGTTATCTGCAC 57.995 50.000 12.71 0.00 36.27 4.57
719 983 0.744414 CCCAGATGGTTAGTGGCACG 60.744 60.000 12.71 0.00 0.00 5.34
730 994 0.462047 GACGTTGCCTACCCAGATGG 60.462 60.000 0.00 0.00 41.37 3.51
731 995 0.806102 CGACGTTGCCTACCCAGATG 60.806 60.000 0.00 0.00 0.00 2.90
816 1102 2.563798 TTTCGTACTCGCCCCGTGT 61.564 57.895 0.00 0.00 37.37 4.49
916 1214 4.597492 CGATCGTAAATTCGTAATGCGTTG 59.403 41.667 7.03 0.00 42.13 4.10
1019 1325 2.797177 ATCAAGAAGAGGAAGGGTGC 57.203 50.000 0.00 0.00 0.00 5.01
1024 1330 4.810491 GCTGAGCTAATCAAGAAGAGGAAG 59.190 45.833 0.00 0.00 37.52 3.46
1026 1332 3.181482 CGCTGAGCTAATCAAGAAGAGGA 60.181 47.826 1.78 0.00 37.52 3.71
1027 1333 3.122297 CGCTGAGCTAATCAAGAAGAGG 58.878 50.000 1.78 0.00 37.52 3.69
1028 1334 4.039151 TCGCTGAGCTAATCAAGAAGAG 57.961 45.455 1.78 0.00 37.52 2.85
1042 1348 2.027314 CTGGCTCCGATCGCTGAG 59.973 66.667 10.32 13.04 0.00 3.35
1067 1373 3.933722 ATGCTGGCGATCCCGGAG 61.934 66.667 0.73 0.00 43.17 4.63
1195 1501 3.706373 GCAGAGGTGCCGGGAGAA 61.706 66.667 2.18 0.00 44.72 2.87
1376 1718 3.365265 GTGGGCAGTTCCGGCTTG 61.365 66.667 0.00 0.00 34.94 4.01
1385 1727 2.842462 TCGTCAGGTGTGGGCAGT 60.842 61.111 0.00 0.00 0.00 4.40
1590 1935 0.249398 GGAAGCTCGCCTGTAGGAAA 59.751 55.000 1.17 0.00 37.39 3.13
1679 2024 2.511600 GGTGGAATCTCGCCGGTG 60.512 66.667 9.28 9.28 0.00 4.94
1685 2030 1.878522 CGGCTTCGGTGGAATCTCG 60.879 63.158 0.00 0.00 0.00 4.04
1779 2124 3.796443 CTCGACGTCCGGCTTCGA 61.796 66.667 20.20 20.20 43.95 3.71
1877 2222 0.611618 ATCATGGTTTTGGCTCCGCA 60.612 50.000 0.00 0.00 0.00 5.69
1899 2244 1.630148 GATTCGTCGGTGGTTGAGAG 58.370 55.000 0.00 0.00 0.00 3.20
1900 2245 0.245539 GGATTCGTCGGTGGTTGAGA 59.754 55.000 0.00 0.00 0.00 3.27
1958 2311 1.033202 TGCCACGGTAGCTCGTCATA 61.033 55.000 0.00 0.00 41.86 2.15
2106 2475 0.869730 ACACGTGATGGCGGTTTAAC 59.130 50.000 25.01 0.00 35.98 2.01
2108 2477 2.452295 TTACACGTGATGGCGGTTTA 57.548 45.000 25.01 0.00 35.98 2.01
2110 2479 1.264826 GTTTTACACGTGATGGCGGTT 59.735 47.619 25.01 0.00 35.98 4.44
2111 2480 0.869730 GTTTTACACGTGATGGCGGT 59.130 50.000 25.01 0.00 35.98 5.68
2112 2481 0.167251 GGTTTTACACGTGATGGCGG 59.833 55.000 25.01 0.00 35.98 6.13
2113 2482 0.179235 CGGTTTTACACGTGATGGCG 60.179 55.000 25.01 0.00 37.94 5.69
2114 2483 0.869730 ACGGTTTTACACGTGATGGC 59.130 50.000 25.01 7.87 42.39 4.40
2115 2484 2.136728 TGACGGTTTTACACGTGATGG 58.863 47.619 25.01 6.28 44.24 3.51
2154 2528 4.236527 TCTATTTTGGAAAGGAGGGAGC 57.763 45.455 0.00 0.00 0.00 4.70
2155 2529 5.825151 GTCATCTATTTTGGAAAGGAGGGAG 59.175 44.000 0.00 0.00 0.00 4.30
2156 2530 5.340027 GGTCATCTATTTTGGAAAGGAGGGA 60.340 44.000 0.00 0.00 0.00 4.20
2157 2531 4.889995 GGTCATCTATTTTGGAAAGGAGGG 59.110 45.833 0.00 0.00 0.00 4.30
2158 2532 4.889995 GGGTCATCTATTTTGGAAAGGAGG 59.110 45.833 0.00 0.00 0.00 4.30
2159 2533 5.509498 TGGGTCATCTATTTTGGAAAGGAG 58.491 41.667 0.00 0.00 0.00 3.69
2160 2534 5.528600 TGGGTCATCTATTTTGGAAAGGA 57.471 39.130 0.00 0.00 0.00 3.36
2161 2535 5.716703 ACTTGGGTCATCTATTTTGGAAAGG 59.283 40.000 0.00 0.00 0.00 3.11
2162 2536 6.840780 ACTTGGGTCATCTATTTTGGAAAG 57.159 37.500 0.00 0.00 0.00 2.62
2163 2537 6.780031 TCAACTTGGGTCATCTATTTTGGAAA 59.220 34.615 0.00 0.00 0.00 3.13
2164 2538 6.310941 TCAACTTGGGTCATCTATTTTGGAA 58.689 36.000 0.00 0.00 0.00 3.53
2165 2539 5.886609 TCAACTTGGGTCATCTATTTTGGA 58.113 37.500 0.00 0.00 0.00 3.53
2166 2540 5.711976 ACTCAACTTGGGTCATCTATTTTGG 59.288 40.000 0.00 0.00 0.00 3.28
2167 2541 6.824305 ACTCAACTTGGGTCATCTATTTTG 57.176 37.500 0.00 0.00 0.00 2.44
2178 2552 6.013379 TCTGAAATAGATGACTCAACTTGGGT 60.013 38.462 0.00 0.00 30.71 4.51
2179 2553 6.409704 TCTGAAATAGATGACTCAACTTGGG 58.590 40.000 0.00 0.00 0.00 4.12
2180 2554 7.412346 CGTTCTGAAATAGATGACTCAACTTGG 60.412 40.741 0.00 0.00 34.80 3.61
2181 2555 7.412346 CCGTTCTGAAATAGATGACTCAACTTG 60.412 40.741 0.00 0.00 34.80 3.16
2182 2556 6.591834 CCGTTCTGAAATAGATGACTCAACTT 59.408 38.462 0.00 0.00 34.80 2.66
2183 2557 6.071334 TCCGTTCTGAAATAGATGACTCAACT 60.071 38.462 0.00 0.00 34.80 3.16
2184 2558 6.100004 TCCGTTCTGAAATAGATGACTCAAC 58.900 40.000 0.00 0.00 34.80 3.18
2185 2559 6.280855 TCCGTTCTGAAATAGATGACTCAA 57.719 37.500 0.00 0.00 34.80 3.02
2186 2560 5.163509 CCTCCGTTCTGAAATAGATGACTCA 60.164 44.000 0.00 0.00 34.80 3.41
2187 2561 5.285651 CCTCCGTTCTGAAATAGATGACTC 58.714 45.833 0.00 0.00 34.80 3.36
2188 2562 4.100189 CCCTCCGTTCTGAAATAGATGACT 59.900 45.833 0.00 0.00 34.80 3.41
2189 2563 4.099573 TCCCTCCGTTCTGAAATAGATGAC 59.900 45.833 0.00 0.00 34.80 3.06
2190 2564 4.286707 TCCCTCCGTTCTGAAATAGATGA 58.713 43.478 0.00 0.00 34.80 2.92
2191 2565 4.100189 ACTCCCTCCGTTCTGAAATAGATG 59.900 45.833 0.00 0.00 34.80 2.90
2192 2566 4.290942 ACTCCCTCCGTTCTGAAATAGAT 58.709 43.478 0.00 0.00 34.80 1.98
2193 2567 3.709587 ACTCCCTCCGTTCTGAAATAGA 58.290 45.455 0.00 0.00 0.00 1.98
2194 2568 4.645588 AGTACTCCCTCCGTTCTGAAATAG 59.354 45.833 0.00 0.00 0.00 1.73
2195 2569 4.607239 AGTACTCCCTCCGTTCTGAAATA 58.393 43.478 0.00 0.00 0.00 1.40
2196 2570 3.442076 AGTACTCCCTCCGTTCTGAAAT 58.558 45.455 0.00 0.00 0.00 2.17
2197 2571 2.885616 AGTACTCCCTCCGTTCTGAAA 58.114 47.619 0.00 0.00 0.00 2.69
2198 2572 2.599408 AGTACTCCCTCCGTTCTGAA 57.401 50.000 0.00 0.00 0.00 3.02
2199 2573 2.599408 AAGTACTCCCTCCGTTCTGA 57.401 50.000 0.00 0.00 0.00 3.27
2200 2574 3.700038 ACATAAGTACTCCCTCCGTTCTG 59.300 47.826 0.00 0.00 0.00 3.02
2201 2575 3.978610 ACATAAGTACTCCCTCCGTTCT 58.021 45.455 0.00 0.00 0.00 3.01
2202 2576 5.841957 TTACATAAGTACTCCCTCCGTTC 57.158 43.478 0.00 0.00 0.00 3.95
2203 2577 7.065504 ACTATTACATAAGTACTCCCTCCGTT 58.934 38.462 0.00 0.00 0.00 4.44
2204 2578 6.608922 ACTATTACATAAGTACTCCCTCCGT 58.391 40.000 0.00 0.00 0.00 4.69
2205 2579 7.014038 ACAACTATTACATAAGTACTCCCTCCG 59.986 40.741 0.00 0.00 0.00 4.63
2206 2580 8.247666 ACAACTATTACATAAGTACTCCCTCC 57.752 38.462 0.00 0.00 0.00 4.30
2207 2581 9.530633 CAACAACTATTACATAAGTACTCCCTC 57.469 37.037 0.00 0.00 0.00 4.30
2208 2582 7.985752 GCAACAACTATTACATAAGTACTCCCT 59.014 37.037 0.00 0.00 0.00 4.20
2209 2583 7.767198 TGCAACAACTATTACATAAGTACTCCC 59.233 37.037 0.00 0.00 0.00 4.30
2210 2584 8.712285 TGCAACAACTATTACATAAGTACTCC 57.288 34.615 0.00 0.00 0.00 3.85
2218 2592 7.174080 TGCTCAGTTTGCAACAACTATTACATA 59.826 33.333 0.00 0.00 37.51 2.29
2225 2599 2.357637 GGTGCTCAGTTTGCAACAACTA 59.642 45.455 0.00 0.00 46.39 2.24
2235 2609 0.403271 AGCCATCTGGTGCTCAGTTT 59.597 50.000 7.35 0.00 43.76 2.66
2245 2619 1.202627 GCAAGAGACCTAGCCATCTGG 60.203 57.143 0.00 0.00 38.53 3.86
2279 2653 4.826556 AGTCTAGAACTTGAACCTGCATC 58.173 43.478 0.00 0.00 33.03 3.91
2323 2697 6.032460 CGTCGAAAAGCCTGAAATAAATTCAC 59.968 38.462 0.00 0.00 43.08 3.18
2325 2699 6.311723 TCGTCGAAAAGCCTGAAATAAATTC 58.688 36.000 0.00 0.00 38.60 2.17
2338 2712 6.358030 CCATTGAATGAATATCGTCGAAAAGC 59.642 38.462 6.76 0.00 0.00 3.51
2354 2728 2.289195 GGGCATGCCATACCATTGAATG 60.289 50.000 36.56 0.00 37.98 2.67
2362 2737 0.675633 GTTGATGGGCATGCCATACC 59.324 55.000 36.56 20.41 37.98 2.73
2492 2869 6.668541 ATGGATCAAACATTCAACGTAGAG 57.331 37.500 0.00 0.00 0.00 2.43
2497 2874 6.624352 ATCCTATGGATCAAACATTCAACG 57.376 37.500 0.00 0.00 38.09 4.10
2658 3037 1.819928 TGCAGGATTCTAAAAGCGCA 58.180 45.000 11.47 0.00 0.00 6.09
2681 3060 3.713826 AAAAGACCGAGGGCATCTTTA 57.286 42.857 0.00 0.00 40.85 1.85
2687 3066 2.230266 GCATTTTAAAAGACCGAGGGCA 59.770 45.455 6.79 0.00 0.00 5.36
2704 3083 5.463392 CACACACGCTATCACTATAAGCATT 59.537 40.000 0.00 0.00 0.00 3.56
2710 3089 4.396790 TCACACACACACGCTATCACTATA 59.603 41.667 0.00 0.00 0.00 1.31
2715 3094 2.517650 TTCACACACACACGCTATCA 57.482 45.000 0.00 0.00 0.00 2.15
2772 3159 4.082125 CTGTTTAGGCTTTGGGAGACAAT 58.918 43.478 0.00 0.00 39.21 2.71
2788 3175 6.518208 AAACTTGGTAACTGCAACTGTTTA 57.482 33.333 0.00 0.00 37.61 2.01
2789 3176 5.400066 AAACTTGGTAACTGCAACTGTTT 57.600 34.783 0.00 0.00 37.61 2.83
2797 3184 4.581409 TGGGTTTCTAAACTTGGTAACTGC 59.419 41.667 5.62 0.00 38.89 4.40
2799 3186 7.907841 ATTTGGGTTTCTAAACTTGGTAACT 57.092 32.000 5.62 0.00 38.89 2.24
2868 3255 1.492319 TTCGAAATAATCCGCCGGCG 61.492 55.000 41.00 41.00 39.44 6.46
2869 3256 0.658897 TTTCGAAATAATCCGCCGGC 59.341 50.000 19.07 19.07 0.00 6.13
2870 3257 2.206750 TCTTTCGAAATAATCCGCCGG 58.793 47.619 11.70 0.00 0.00 6.13
2871 3258 3.120649 GGATCTTTCGAAATAATCCGCCG 60.121 47.826 24.99 8.53 0.00 6.46
2872 3259 3.813166 TGGATCTTTCGAAATAATCCGCC 59.187 43.478 29.06 17.98 0.00 6.13
2873 3260 4.319549 GGTGGATCTTTCGAAATAATCCGC 60.320 45.833 32.84 32.84 36.72 5.54
2874 3261 4.814234 TGGTGGATCTTTCGAAATAATCCG 59.186 41.667 29.06 13.96 0.00 4.18
2875 3262 5.008712 GGTGGTGGATCTTTCGAAATAATCC 59.991 44.000 28.78 28.78 0.00 3.01
2876 3263 5.823045 AGGTGGTGGATCTTTCGAAATAATC 59.177 40.000 11.70 15.96 0.00 1.75
2877 3264 5.755849 AGGTGGTGGATCTTTCGAAATAAT 58.244 37.500 11.70 8.26 0.00 1.28
2878 3265 5.174037 AGGTGGTGGATCTTTCGAAATAA 57.826 39.130 11.70 3.26 0.00 1.40
2879 3266 4.837093 AGGTGGTGGATCTTTCGAAATA 57.163 40.909 11.70 4.54 0.00 1.40
2880 3267 3.721087 AGGTGGTGGATCTTTCGAAAT 57.279 42.857 11.70 0.00 0.00 2.17
2881 3268 3.502123 AAGGTGGTGGATCTTTCGAAA 57.498 42.857 10.71 10.71 0.00 3.46
2882 3269 4.202377 TGTTAAGGTGGTGGATCTTTCGAA 60.202 41.667 0.00 0.00 0.00 3.71
2883 3270 3.325425 TGTTAAGGTGGTGGATCTTTCGA 59.675 43.478 0.00 0.00 0.00 3.71
2884 3271 3.670625 TGTTAAGGTGGTGGATCTTTCG 58.329 45.455 0.00 0.00 0.00 3.46
2885 3272 3.440522 GCTGTTAAGGTGGTGGATCTTTC 59.559 47.826 0.00 0.00 0.00 2.62
2886 3273 3.074538 AGCTGTTAAGGTGGTGGATCTTT 59.925 43.478 0.00 0.00 31.35 2.52
2887 3274 2.644798 AGCTGTTAAGGTGGTGGATCTT 59.355 45.455 0.00 0.00 31.35 2.40
2888 3275 2.026822 CAGCTGTTAAGGTGGTGGATCT 60.027 50.000 5.25 0.00 46.16 2.75
2889 3276 2.359900 CAGCTGTTAAGGTGGTGGATC 58.640 52.381 5.25 0.00 46.16 3.36
2890 3277 2.496899 CAGCTGTTAAGGTGGTGGAT 57.503 50.000 5.25 0.00 46.16 3.41
2897 3284 3.074412 CGGATCAAACAGCTGTTAAGGT 58.926 45.455 31.31 22.64 37.25 3.50
2898 3285 2.420022 CCGGATCAAACAGCTGTTAAGG 59.580 50.000 31.31 22.44 37.25 2.69
2899 3286 2.159517 GCCGGATCAAACAGCTGTTAAG 60.160 50.000 31.31 25.01 37.25 1.85
2900 3287 1.810151 GCCGGATCAAACAGCTGTTAA 59.190 47.619 31.31 22.26 37.25 2.01
2901 3288 1.448985 GCCGGATCAAACAGCTGTTA 58.551 50.000 31.31 18.08 37.25 2.41
2902 3289 1.577328 CGCCGGATCAAACAGCTGTT 61.577 55.000 26.36 26.36 40.50 3.16
2903 3290 2.034879 CGCCGGATCAAACAGCTGT 61.035 57.895 15.25 15.25 0.00 4.40
2904 3291 2.787249 CGCCGGATCAAACAGCTG 59.213 61.111 13.48 13.48 0.00 4.24
2905 3292 3.127533 GCGCCGGATCAAACAGCT 61.128 61.111 5.05 0.00 0.00 4.24
2906 3293 2.652893 GATGCGCCGGATCAAACAGC 62.653 60.000 14.01 0.00 0.00 4.40
2907 3294 1.353103 GATGCGCCGGATCAAACAG 59.647 57.895 14.01 0.00 0.00 3.16
2908 3295 2.112198 GGATGCGCCGGATCAAACA 61.112 57.895 20.20 0.00 0.00 2.83
2909 3296 1.447317 ATGGATGCGCCGGATCAAAC 61.447 55.000 20.20 3.78 40.66 2.93
2910 3297 1.152984 ATGGATGCGCCGGATCAAA 60.153 52.632 20.20 8.22 40.66 2.69
2911 3298 1.597854 GATGGATGCGCCGGATCAA 60.598 57.895 20.20 9.78 40.66 2.57
2912 3299 2.031012 GATGGATGCGCCGGATCA 59.969 61.111 20.20 7.03 40.66 2.92
2913 3300 3.114616 CGATGGATGCGCCGGATC 61.115 66.667 10.38 10.38 40.66 3.36
2914 3301 4.687215 CCGATGGATGCGCCGGAT 62.687 66.667 14.27 0.00 44.29 4.18
2922 3309 4.996434 GAGCCGGGCCGATGGATG 62.996 72.222 30.79 10.78 0.00 3.51
2925 3312 4.489771 AAAGAGCCGGGCCGATGG 62.490 66.667 30.79 12.50 0.00 3.51
2926 3313 2.897350 GAAAGAGCCGGGCCGATG 60.897 66.667 30.79 13.37 0.00 3.84
2927 3314 4.176752 GGAAAGAGCCGGGCCGAT 62.177 66.667 30.79 16.33 0.00 4.18
2929 3316 4.840005 GAGGAAAGAGCCGGGCCG 62.840 72.222 21.46 21.46 0.00 6.13
2930 3317 1.696097 TATGAGGAAAGAGCCGGGCC 61.696 60.000 17.02 7.43 0.00 5.80
2931 3318 0.180406 TTATGAGGAAAGAGCCGGGC 59.820 55.000 12.11 12.11 0.00 6.13
2932 3319 2.880890 CAATTATGAGGAAAGAGCCGGG 59.119 50.000 2.18 0.00 0.00 5.73
2933 3320 2.291741 GCAATTATGAGGAAAGAGCCGG 59.708 50.000 0.00 0.00 0.00 6.13
2934 3321 2.945008 TGCAATTATGAGGAAAGAGCCG 59.055 45.455 0.00 0.00 0.00 5.52
2935 3322 4.158394 TGTTGCAATTATGAGGAAAGAGCC 59.842 41.667 0.59 0.00 0.00 4.70
2936 3323 5.314923 TGTTGCAATTATGAGGAAAGAGC 57.685 39.130 0.59 0.00 0.00 4.09
2937 3324 6.810182 CCTTTGTTGCAATTATGAGGAAAGAG 59.190 38.462 0.59 0.00 0.00 2.85
2938 3325 6.690530 CCTTTGTTGCAATTATGAGGAAAGA 58.309 36.000 0.59 0.00 0.00 2.52
2939 3326 5.349543 GCCTTTGTTGCAATTATGAGGAAAG 59.650 40.000 0.59 2.09 0.00 2.62
2940 3327 5.221601 TGCCTTTGTTGCAATTATGAGGAAA 60.222 36.000 0.59 0.00 35.40 3.13
2941 3328 4.282957 TGCCTTTGTTGCAATTATGAGGAA 59.717 37.500 0.59 0.00 35.40 3.36
2942 3329 3.831333 TGCCTTTGTTGCAATTATGAGGA 59.169 39.130 0.59 0.00 35.40 3.71
2943 3330 4.178540 CTGCCTTTGTTGCAATTATGAGG 58.821 43.478 0.59 7.59 38.46 3.86
2944 3331 4.624024 CACTGCCTTTGTTGCAATTATGAG 59.376 41.667 0.59 0.00 38.46 2.90
2945 3332 4.039004 ACACTGCCTTTGTTGCAATTATGA 59.961 37.500 0.59 0.00 38.46 2.15
2946 3333 4.309099 ACACTGCCTTTGTTGCAATTATG 58.691 39.130 0.59 0.00 38.46 1.90
2947 3334 4.605640 ACACTGCCTTTGTTGCAATTAT 57.394 36.364 0.59 0.00 38.46 1.28
2948 3335 4.118410 CAACACTGCCTTTGTTGCAATTA 58.882 39.130 0.59 0.00 45.36 1.40
2949 3336 2.937799 CAACACTGCCTTTGTTGCAATT 59.062 40.909 0.59 0.00 45.36 2.32
2950 3337 2.553086 CAACACTGCCTTTGTTGCAAT 58.447 42.857 0.59 0.00 45.36 3.56
2951 3338 2.007360 CAACACTGCCTTTGTTGCAA 57.993 45.000 0.00 0.00 45.36 4.08
2952 3339 3.737127 CAACACTGCCTTTGTTGCA 57.263 47.368 8.67 0.00 45.36 4.08
2955 3342 0.814457 TTCGCAACACTGCCTTTGTT 59.186 45.000 0.00 0.00 46.56 2.83
2956 3343 0.814457 TTTCGCAACACTGCCTTTGT 59.186 45.000 0.00 0.00 46.56 2.83
2957 3344 1.199624 GTTTCGCAACACTGCCTTTG 58.800 50.000 0.00 0.00 46.56 2.77
2958 3345 0.102300 GGTTTCGCAACACTGCCTTT 59.898 50.000 0.00 0.00 46.56 3.11
2959 3346 1.733526 GGTTTCGCAACACTGCCTT 59.266 52.632 0.00 0.00 46.56 4.35
2960 3347 2.542907 CGGTTTCGCAACACTGCCT 61.543 57.895 0.00 0.00 46.56 4.75
2961 3348 2.051345 CGGTTTCGCAACACTGCC 60.051 61.111 0.00 0.00 46.56 4.85
2962 3349 0.524604 AAACGGTTTCGCAACACTGC 60.525 50.000 0.00 0.00 45.75 4.40
2963 3350 1.187715 CAAACGGTTTCGCAACACTG 58.812 50.000 2.51 0.00 40.63 3.66
2964 3351 0.524604 GCAAACGGTTTCGCAACACT 60.525 50.000 17.27 0.00 40.63 3.55
2965 3352 0.798771 TGCAAACGGTTTCGCAACAC 60.799 50.000 20.48 2.21 40.63 3.32
2966 3353 0.798771 GTGCAAACGGTTTCGCAACA 60.799 50.000 22.77 8.29 40.63 3.33
2967 3354 0.798771 TGTGCAAACGGTTTCGCAAC 60.799 50.000 22.77 18.41 40.63 4.17
2968 3355 0.101399 ATGTGCAAACGGTTTCGCAA 59.899 45.000 22.77 16.43 40.63 4.85
2969 3356 0.945099 TATGTGCAAACGGTTTCGCA 59.055 45.000 19.51 19.51 40.63 5.10
2970 3357 2.159572 AGATATGTGCAAACGGTTTCGC 60.160 45.455 16.08 16.08 40.63 4.70
2971 3358 3.670203 GAGATATGTGCAAACGGTTTCG 58.330 45.455 2.51 1.35 43.02 3.46
2972 3359 3.124636 ACGAGATATGTGCAAACGGTTTC 59.875 43.478 2.51 0.14 0.00 2.78
2973 3360 3.071479 ACGAGATATGTGCAAACGGTTT 58.929 40.909 0.00 0.00 0.00 3.27
2974 3361 2.415168 CACGAGATATGTGCAAACGGTT 59.585 45.455 0.00 0.00 0.00 4.44
2975 3362 1.999735 CACGAGATATGTGCAAACGGT 59.000 47.619 0.00 0.00 0.00 4.83
2976 3363 1.999735 ACACGAGATATGTGCAAACGG 59.000 47.619 0.00 0.00 41.03 4.44
2977 3364 3.407252 CAACACGAGATATGTGCAAACG 58.593 45.455 0.00 0.00 41.03 3.60
2978 3365 3.163594 GCAACACGAGATATGTGCAAAC 58.836 45.455 0.00 0.00 41.03 2.93
2979 3366 3.469899 GCAACACGAGATATGTGCAAA 57.530 42.857 0.00 0.00 41.03 3.68
2992 3379 0.570272 GCAAAAGTTTCCGCAACACG 59.430 50.000 5.36 0.00 37.93 4.49
2993 3380 1.634702 TGCAAAAGTTTCCGCAACAC 58.365 45.000 9.55 0.00 37.93 3.32
2994 3381 2.370281 TTGCAAAAGTTTCCGCAACA 57.630 40.000 17.07 2.09 39.32 3.33
2996 3383 2.370281 TGTTGCAAAAGTTTCCGCAA 57.630 40.000 17.07 17.07 41.79 4.85
2997 3384 2.370281 TTGTTGCAAAAGTTTCCGCA 57.630 40.000 0.00 8.23 0.00 5.69
2998 3385 2.926838 TCTTTGTTGCAAAAGTTTCCGC 59.073 40.909 0.00 3.59 38.16 5.54
2999 3386 5.717038 AATCTTTGTTGCAAAAGTTTCCG 57.283 34.783 0.00 0.00 38.16 4.30
3000 3387 7.304735 ACAAAATCTTTGTTGCAAAAGTTTCC 58.695 30.769 0.00 0.00 38.16 3.13
3001 3388 8.726650 AACAAAATCTTTGTTGCAAAAGTTTC 57.273 26.923 14.88 0.00 40.70 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.