Multiple sequence alignment - TraesCS2D01G186900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G186900 chr2D 100.000 2312 0 0 1 2312 131146840 131149151 0.000000e+00 4270.0
1 TraesCS2D01G186900 chr2D 91.589 428 25 6 440 857 131133793 131134219 4.280000e-162 580.0
2 TraesCS2D01G186900 chr2D 97.222 36 1 0 372 407 129186513 129186548 6.900000e-06 62.1
3 TraesCS2D01G186900 chr2B 90.516 949 53 14 517 1436 184654534 184655474 0.000000e+00 1219.0
4 TraesCS2D01G186900 chr2B 84.990 513 43 6 1823 2312 184658147 184658648 7.420000e-135 490.0
5 TraesCS2D01G186900 chr2B 92.982 171 7 4 1689 1855 184657979 184658148 6.380000e-61 244.0
6 TraesCS2D01G186900 chr2A 89.093 816 47 15 703 1501 137240053 137240843 0.000000e+00 976.0
7 TraesCS2D01G186900 chr2A 90.600 500 44 3 1814 2312 137241294 137241791 0.000000e+00 660.0
8 TraesCS2D01G186900 chr2A 89.145 304 26 3 419 715 137231376 137231679 2.810000e-99 372.0
9 TraesCS2D01G186900 chr2A 92.857 42 3 0 372 413 15396702 15396661 6.900000e-06 62.1
10 TraesCS2D01G186900 chrUn 88.978 744 46 11 649 1368 17491754 17491023 0.000000e+00 887.0
11 TraesCS2D01G186900 chrUn 88.978 744 46 11 649 1368 339822581 339821850 0.000000e+00 887.0
12 TraesCS2D01G186900 chrUn 86.638 464 53 5 1689 2151 17482628 17482173 2.650000e-139 505.0
13 TraesCS2D01G186900 chrUn 86.768 461 52 5 1689 2148 373409446 373409898 2.650000e-139 505.0
14 TraesCS2D01G186900 chrUn 90.129 233 22 1 417 649 17492697 17492466 3.730000e-78 302.0
15 TraesCS2D01G186900 chrUn 90.435 230 21 1 414 643 302458048 302458276 3.730000e-78 302.0
16 TraesCS2D01G186900 chrUn 88.024 167 11 6 1372 1535 17482842 17482682 3.030000e-44 189.0
17 TraesCS2D01G186900 chrUn 88.415 164 10 6 1372 1532 373409232 373409389 3.030000e-44 189.0
18 TraesCS2D01G186900 chrUn 89.437 142 15 0 2171 2312 17481533 17481392 1.830000e-41 180.0
19 TraesCS2D01G186900 chr5B 85.600 375 49 4 1 373 52642570 52642199 2.790000e-104 388.0
20 TraesCS2D01G186900 chr5D 88.889 270 19 5 1 269 554498449 554498708 2.870000e-84 322.0
21 TraesCS2D01G186900 chr5D 92.857 42 3 0 372 413 492605083 492605042 6.900000e-06 62.1
22 TraesCS2D01G186900 chr5D 100.000 30 0 0 327 356 554498709 554498738 3.210000e-04 56.5
23 TraesCS2D01G186900 chr1A 93.478 46 3 0 371 416 6419864 6419819 4.120000e-08 69.4
24 TraesCS2D01G186900 chr3A 97.297 37 1 0 371 407 733284004 733284040 1.920000e-06 63.9
25 TraesCS2D01G186900 chr1D 97.297 37 1 0 371 407 427381219 427381255 1.920000e-06 63.9
26 TraesCS2D01G186900 chr4D 91.304 46 2 2 363 407 473977015 473977059 6.900000e-06 62.1
27 TraesCS2D01G186900 chr3D 92.857 42 3 0 373 414 70733436 70733477 6.900000e-06 62.1
28 TraesCS2D01G186900 chr1B 92.857 42 3 0 372 413 62081408 62081367 6.900000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G186900 chr2D 131146840 131149151 2311 False 4270.000000 4270 100.0000 1 2312 1 chr2D.!!$F3 2311
1 TraesCS2D01G186900 chr2B 184654534 184658648 4114 False 651.000000 1219 89.4960 517 2312 3 chr2B.!!$F1 1795
2 TraesCS2D01G186900 chr2A 137240053 137241791 1738 False 818.000000 976 89.8465 703 2312 2 chr2A.!!$F2 1609
3 TraesCS2D01G186900 chrUn 339821850 339822581 731 True 887.000000 887 88.9780 649 1368 1 chrUn.!!$R1 719
4 TraesCS2D01G186900 chrUn 17491023 17492697 1674 True 594.500000 887 89.5535 417 1368 2 chrUn.!!$R3 951
5 TraesCS2D01G186900 chrUn 373409232 373409898 666 False 347.000000 505 87.5915 1372 2148 2 chrUn.!!$F2 776
6 TraesCS2D01G186900 chrUn 17481392 17482842 1450 True 291.333333 505 88.0330 1372 2312 3 chrUn.!!$R2 940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.031857 TTGTTCAATTGCCCGCACAG 59.968 50.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 2053 0.163146 GCACGGTACAACGAAGAAGC 59.837 55.0 0.0 0.0 37.61 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.134879 TCGCAAGAGGTCCGTTGT 58.865 55.556 8.36 0.00 45.01 3.32
46 47 1.444250 TCGCAAGAGGTCCGTTGTT 59.556 52.632 8.36 0.00 45.01 2.83
47 48 0.599204 TCGCAAGAGGTCCGTTGTTC 60.599 55.000 8.36 0.00 45.01 3.18
48 49 0.878523 CGCAAGAGGTCCGTTGTTCA 60.879 55.000 8.36 0.00 43.02 3.18
49 50 1.305201 GCAAGAGGTCCGTTGTTCAA 58.695 50.000 8.36 0.00 0.00 2.69
50 51 1.880027 GCAAGAGGTCCGTTGTTCAAT 59.120 47.619 8.36 0.00 0.00 2.57
51 52 2.293399 GCAAGAGGTCCGTTGTTCAATT 59.707 45.455 8.36 0.00 0.00 2.32
52 53 3.853307 GCAAGAGGTCCGTTGTTCAATTG 60.853 47.826 0.00 0.00 0.00 2.32
53 54 1.880027 AGAGGTCCGTTGTTCAATTGC 59.120 47.619 0.00 0.00 0.00 3.56
54 55 0.958822 AGGTCCGTTGTTCAATTGCC 59.041 50.000 0.00 0.00 0.00 4.52
55 56 0.038618 GGTCCGTTGTTCAATTGCCC 60.039 55.000 0.00 0.00 0.00 5.36
56 57 0.386731 GTCCGTTGTTCAATTGCCCG 60.387 55.000 0.00 0.00 0.00 6.13
57 58 1.732683 CCGTTGTTCAATTGCCCGC 60.733 57.895 0.00 0.00 0.00 6.13
58 59 1.007964 CGTTGTTCAATTGCCCGCA 60.008 52.632 0.00 0.00 0.00 5.69
59 60 1.274798 CGTTGTTCAATTGCCCGCAC 61.275 55.000 0.00 0.00 0.00 5.34
60 61 0.249238 GTTGTTCAATTGCCCGCACA 60.249 50.000 0.00 0.00 0.00 4.57
61 62 0.031857 TTGTTCAATTGCCCGCACAG 59.968 50.000 0.00 0.00 0.00 3.66
62 63 0.821301 TGTTCAATTGCCCGCACAGA 60.821 50.000 0.00 0.00 0.00 3.41
63 64 0.387239 GTTCAATTGCCCGCACAGAC 60.387 55.000 0.00 0.00 0.00 3.51
64 65 0.537143 TTCAATTGCCCGCACAGACT 60.537 50.000 0.00 0.00 0.00 3.24
65 66 0.537143 TCAATTGCCCGCACAGACTT 60.537 50.000 0.00 0.00 0.00 3.01
66 67 0.387622 CAATTGCCCGCACAGACTTG 60.388 55.000 0.00 0.00 0.00 3.16
67 68 0.537143 AATTGCCCGCACAGACTTGA 60.537 50.000 0.00 0.00 0.00 3.02
68 69 0.957395 ATTGCCCGCACAGACTTGAG 60.957 55.000 0.00 0.00 0.00 3.02
69 70 2.031163 GCCCGCACAGACTTGAGT 59.969 61.111 0.00 0.00 0.00 3.41
70 71 1.598130 GCCCGCACAGACTTGAGTT 60.598 57.895 0.00 0.00 0.00 3.01
71 72 1.166531 GCCCGCACAGACTTGAGTTT 61.167 55.000 0.00 0.00 0.00 2.66
72 73 1.308998 CCCGCACAGACTTGAGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
73 74 1.002468 CCCGCACAGACTTGAGTTTTG 60.002 52.381 0.00 0.00 0.00 2.44
74 75 1.002468 CCGCACAGACTTGAGTTTTGG 60.002 52.381 0.00 0.00 0.00 3.28
75 76 1.002468 CGCACAGACTTGAGTTTTGGG 60.002 52.381 0.00 0.00 0.00 4.12
76 77 2.297701 GCACAGACTTGAGTTTTGGGA 58.702 47.619 3.85 0.00 0.00 4.37
77 78 2.687935 GCACAGACTTGAGTTTTGGGAA 59.312 45.455 3.85 0.00 0.00 3.97
78 79 3.319122 GCACAGACTTGAGTTTTGGGAAT 59.681 43.478 3.85 0.00 0.00 3.01
79 80 4.202151 GCACAGACTTGAGTTTTGGGAATT 60.202 41.667 3.85 0.00 0.00 2.17
80 81 5.682212 GCACAGACTTGAGTTTTGGGAATTT 60.682 40.000 3.85 0.00 0.00 1.82
81 82 5.979517 CACAGACTTGAGTTTTGGGAATTTC 59.020 40.000 0.00 0.00 0.00 2.17
82 83 5.893824 ACAGACTTGAGTTTTGGGAATTTCT 59.106 36.000 0.00 0.00 0.00 2.52
83 84 6.183360 ACAGACTTGAGTTTTGGGAATTTCTG 60.183 38.462 0.00 0.00 33.39 3.02
84 85 4.948847 ACTTGAGTTTTGGGAATTTCTGC 58.051 39.130 0.00 0.00 0.00 4.26
85 86 4.651045 ACTTGAGTTTTGGGAATTTCTGCT 59.349 37.500 0.00 0.00 0.00 4.24
86 87 5.833131 ACTTGAGTTTTGGGAATTTCTGCTA 59.167 36.000 0.00 0.00 0.00 3.49
87 88 6.323739 ACTTGAGTTTTGGGAATTTCTGCTAA 59.676 34.615 0.00 0.00 0.00 3.09
88 89 6.084326 TGAGTTTTGGGAATTTCTGCTAAC 57.916 37.500 0.00 0.00 0.00 2.34
89 90 5.833131 TGAGTTTTGGGAATTTCTGCTAACT 59.167 36.000 0.00 0.00 0.00 2.24
90 91 6.089249 AGTTTTGGGAATTTCTGCTAACTG 57.911 37.500 0.00 0.00 0.00 3.16
91 92 4.519540 TTTGGGAATTTCTGCTAACTGC 57.480 40.909 0.00 0.00 43.25 4.40
92 93 2.446435 TGGGAATTTCTGCTAACTGCC 58.554 47.619 0.00 0.00 42.00 4.85
93 94 2.041620 TGGGAATTTCTGCTAACTGCCT 59.958 45.455 0.00 0.00 42.00 4.75
94 95 3.092301 GGGAATTTCTGCTAACTGCCTT 58.908 45.455 0.00 0.00 42.00 4.35
95 96 3.511540 GGGAATTTCTGCTAACTGCCTTT 59.488 43.478 0.00 0.00 42.00 3.11
96 97 4.021104 GGGAATTTCTGCTAACTGCCTTTT 60.021 41.667 0.00 0.00 42.00 2.27
97 98 5.185056 GGGAATTTCTGCTAACTGCCTTTTA 59.815 40.000 0.00 0.00 42.00 1.52
98 99 6.295067 GGGAATTTCTGCTAACTGCCTTTTAA 60.295 38.462 0.00 0.00 42.00 1.52
99 100 6.808704 GGAATTTCTGCTAACTGCCTTTTAAG 59.191 38.462 0.00 0.00 42.00 1.85
100 101 6.901081 ATTTCTGCTAACTGCCTTTTAAGT 57.099 33.333 0.00 0.00 42.00 2.24
101 102 6.709018 TTTCTGCTAACTGCCTTTTAAGTT 57.291 33.333 0.00 0.00 42.00 2.66
102 103 6.709018 TTCTGCTAACTGCCTTTTAAGTTT 57.291 33.333 0.00 0.00 42.00 2.66
103 104 6.709018 TCTGCTAACTGCCTTTTAAGTTTT 57.291 33.333 0.00 0.00 42.00 2.43
104 105 6.503524 TCTGCTAACTGCCTTTTAAGTTTTG 58.496 36.000 0.00 0.00 42.00 2.44
105 106 5.047188 TGCTAACTGCCTTTTAAGTTTTGC 58.953 37.500 0.00 0.00 42.00 3.68
106 107 5.163457 TGCTAACTGCCTTTTAAGTTTTGCT 60.163 36.000 11.55 0.00 42.00 3.91
107 108 5.175673 GCTAACTGCCTTTTAAGTTTTGCTG 59.824 40.000 0.00 0.00 37.74 4.41
108 109 3.457234 ACTGCCTTTTAAGTTTTGCTGC 58.543 40.909 0.00 0.00 0.00 5.25
109 110 3.132824 ACTGCCTTTTAAGTTTTGCTGCT 59.867 39.130 0.00 0.00 0.00 4.24
110 111 3.716601 TGCCTTTTAAGTTTTGCTGCTC 58.283 40.909 0.00 0.00 0.00 4.26
111 112 3.384467 TGCCTTTTAAGTTTTGCTGCTCT 59.616 39.130 0.00 0.00 0.00 4.09
112 113 3.983988 GCCTTTTAAGTTTTGCTGCTCTC 59.016 43.478 0.00 0.00 0.00 3.20
113 114 4.261783 GCCTTTTAAGTTTTGCTGCTCTCT 60.262 41.667 0.00 0.00 0.00 3.10
114 115 5.737349 GCCTTTTAAGTTTTGCTGCTCTCTT 60.737 40.000 0.00 3.57 0.00 2.85
115 116 5.917447 CCTTTTAAGTTTTGCTGCTCTCTTC 59.083 40.000 0.00 0.00 0.00 2.87
116 117 6.238869 CCTTTTAAGTTTTGCTGCTCTCTTCT 60.239 38.462 0.00 0.00 0.00 2.85
117 118 5.931441 TTAAGTTTTGCTGCTCTCTTCTC 57.069 39.130 0.00 0.00 0.00 2.87
118 119 3.767902 AGTTTTGCTGCTCTCTTCTCT 57.232 42.857 0.00 0.00 0.00 3.10
119 120 4.084011 AGTTTTGCTGCTCTCTTCTCTT 57.916 40.909 0.00 0.00 0.00 2.85
120 121 4.459330 AGTTTTGCTGCTCTCTTCTCTTT 58.541 39.130 0.00 0.00 0.00 2.52
121 122 4.514816 AGTTTTGCTGCTCTCTTCTCTTTC 59.485 41.667 0.00 0.00 0.00 2.62
122 123 4.348863 TTTGCTGCTCTCTTCTCTTTCT 57.651 40.909 0.00 0.00 0.00 2.52
123 124 4.348863 TTGCTGCTCTCTTCTCTTTCTT 57.651 40.909 0.00 0.00 0.00 2.52
124 125 4.348863 TGCTGCTCTCTTCTCTTTCTTT 57.651 40.909 0.00 0.00 0.00 2.52
125 126 5.474578 TGCTGCTCTCTTCTCTTTCTTTA 57.525 39.130 0.00 0.00 0.00 1.85
126 127 5.858381 TGCTGCTCTCTTCTCTTTCTTTAA 58.142 37.500 0.00 0.00 0.00 1.52
127 128 6.471146 TGCTGCTCTCTTCTCTTTCTTTAAT 58.529 36.000 0.00 0.00 0.00 1.40
128 129 6.370994 TGCTGCTCTCTTCTCTTTCTTTAATG 59.629 38.462 0.00 0.00 0.00 1.90
129 130 6.593382 GCTGCTCTCTTCTCTTTCTTTAATGA 59.407 38.462 0.00 0.00 0.00 2.57
130 131 7.280652 GCTGCTCTCTTCTCTTTCTTTAATGAT 59.719 37.037 0.00 0.00 0.00 2.45
131 132 8.489990 TGCTCTCTTCTCTTTCTTTAATGATG 57.510 34.615 0.00 0.00 0.00 3.07
132 133 7.551974 TGCTCTCTTCTCTTTCTTTAATGATGG 59.448 37.037 0.00 0.00 0.00 3.51
133 134 7.012232 GCTCTCTTCTCTTTCTTTAATGATGGG 59.988 40.741 0.00 0.00 0.00 4.00
134 135 8.150827 TCTCTTCTCTTTCTTTAATGATGGGA 57.849 34.615 0.00 0.00 0.00 4.37
135 136 8.776119 TCTCTTCTCTTTCTTTAATGATGGGAT 58.224 33.333 0.00 0.00 0.00 3.85
136 137 9.406113 CTCTTCTCTTTCTTTAATGATGGGATT 57.594 33.333 0.00 0.00 0.00 3.01
137 138 9.182214 TCTTCTCTTTCTTTAATGATGGGATTG 57.818 33.333 0.00 0.00 0.00 2.67
138 139 7.338800 TCTCTTTCTTTAATGATGGGATTGC 57.661 36.000 0.00 0.00 0.00 3.56
139 140 6.891361 TCTCTTTCTTTAATGATGGGATTGCA 59.109 34.615 0.00 0.00 0.00 4.08
140 141 7.396907 TCTCTTTCTTTAATGATGGGATTGCAA 59.603 33.333 0.00 0.00 0.00 4.08
141 142 7.905265 TCTTTCTTTAATGATGGGATTGCAAA 58.095 30.769 1.71 0.00 0.00 3.68
142 143 7.818930 TCTTTCTTTAATGATGGGATTGCAAAC 59.181 33.333 1.71 0.00 0.00 2.93
143 144 5.976458 TCTTTAATGATGGGATTGCAAACC 58.024 37.500 17.03 17.03 0.00 3.27
144 145 5.721000 TCTTTAATGATGGGATTGCAAACCT 59.279 36.000 23.31 6.46 0.00 3.50
145 146 6.894654 TCTTTAATGATGGGATTGCAAACCTA 59.105 34.615 23.31 18.99 0.00 3.08
146 147 7.398618 TCTTTAATGATGGGATTGCAAACCTAA 59.601 33.333 23.31 13.58 0.00 2.69
147 148 7.673641 TTAATGATGGGATTGCAAACCTAAT 57.326 32.000 23.31 17.23 0.00 1.73
148 149 8.774546 TTAATGATGGGATTGCAAACCTAATA 57.225 30.769 23.31 12.23 0.00 0.98
149 150 6.655078 ATGATGGGATTGCAAACCTAATAC 57.345 37.500 23.31 14.10 0.00 1.89
150 151 5.514169 TGATGGGATTGCAAACCTAATACA 58.486 37.500 23.31 16.11 0.00 2.29
151 152 5.954752 TGATGGGATTGCAAACCTAATACAA 59.045 36.000 23.31 3.33 0.00 2.41
152 153 5.913137 TGGGATTGCAAACCTAATACAAG 57.087 39.130 23.31 0.00 0.00 3.16
153 154 5.575157 TGGGATTGCAAACCTAATACAAGA 58.425 37.500 23.31 0.00 0.00 3.02
154 155 6.013379 TGGGATTGCAAACCTAATACAAGAA 58.987 36.000 23.31 0.00 0.00 2.52
155 156 6.071616 TGGGATTGCAAACCTAATACAAGAAC 60.072 38.462 23.31 4.77 0.00 3.01
156 157 6.330278 GGATTGCAAACCTAATACAAGAACC 58.670 40.000 17.92 0.00 0.00 3.62
157 158 6.152831 GGATTGCAAACCTAATACAAGAACCT 59.847 38.462 17.92 0.00 0.00 3.50
158 159 6.969993 TTGCAAACCTAATACAAGAACCTT 57.030 33.333 0.00 0.00 0.00 3.50
159 160 6.325919 TGCAAACCTAATACAAGAACCTTG 57.674 37.500 5.26 5.26 0.00 3.61
160 161 5.242838 TGCAAACCTAATACAAGAACCTTGG 59.757 40.000 10.91 0.00 0.00 3.61
161 162 5.243060 GCAAACCTAATACAAGAACCTTGGT 59.757 40.000 10.91 0.00 0.00 3.67
162 163 6.677913 CAAACCTAATACAAGAACCTTGGTG 58.322 40.000 10.91 0.00 0.00 4.17
163 164 4.332828 ACCTAATACAAGAACCTTGGTGC 58.667 43.478 10.91 0.00 0.00 5.01
164 165 3.694566 CCTAATACAAGAACCTTGGTGCC 59.305 47.826 10.91 0.00 0.00 5.01
165 166 1.821216 ATACAAGAACCTTGGTGCCG 58.179 50.000 10.91 0.00 0.00 5.69
166 167 0.887387 TACAAGAACCTTGGTGCCGC 60.887 55.000 10.91 0.00 0.00 6.53
167 168 2.978010 AAGAACCTTGGTGCCGCG 60.978 61.111 0.00 0.00 0.00 6.46
174 175 4.251771 TTGGTGCCGCGGTGGTTA 62.252 61.111 28.70 7.18 41.21 2.85
175 176 4.690719 TGGTGCCGCGGTGGTTAG 62.691 66.667 28.70 0.00 41.21 2.34
178 179 4.627801 TGCCGCGGTGGTTAGCAA 62.628 61.111 28.70 0.00 41.21 3.91
179 180 3.358707 GCCGCGGTGGTTAGCAAA 61.359 61.111 28.70 0.00 41.21 3.68
180 181 2.867472 CCGCGGTGGTTAGCAAAG 59.133 61.111 19.50 0.00 0.00 2.77
181 182 1.964373 CCGCGGTGGTTAGCAAAGT 60.964 57.895 19.50 0.00 0.00 2.66
182 183 1.206578 CGCGGTGGTTAGCAAAGTG 59.793 57.895 0.00 0.00 0.00 3.16
183 184 1.081442 GCGGTGGTTAGCAAAGTGC 60.081 57.895 0.00 0.00 45.46 4.40
193 194 3.384702 GCAAAGTGCGCTTACTTCC 57.615 52.632 13.93 4.93 39.86 3.46
194 195 0.591170 GCAAAGTGCGCTTACTTCCA 59.409 50.000 13.93 0.00 39.86 3.53
195 196 1.663161 GCAAAGTGCGCTTACTTCCAC 60.663 52.381 13.93 0.00 39.86 4.02
196 197 1.069227 CAAAGTGCGCTTACTTCCACC 60.069 52.381 13.93 0.00 39.86 4.61
197 198 0.107831 AAGTGCGCTTACTTCCACCA 59.892 50.000 11.64 0.00 36.16 4.17
198 199 0.320771 AGTGCGCTTACTTCCACCAG 60.321 55.000 9.73 0.00 0.00 4.00
199 200 1.003839 TGCGCTTACTTCCACCAGG 60.004 57.895 9.73 0.00 0.00 4.45
200 201 1.003718 GCGCTTACTTCCACCAGGT 60.004 57.895 0.00 0.00 35.89 4.00
201 202 0.248289 GCGCTTACTTCCACCAGGTA 59.752 55.000 0.00 0.00 35.89 3.08
202 203 1.134491 GCGCTTACTTCCACCAGGTAT 60.134 52.381 0.00 0.00 35.89 2.73
203 204 2.550978 CGCTTACTTCCACCAGGTATG 58.449 52.381 0.00 0.00 35.89 2.39
215 216 1.670811 CCAGGTATGGTGTTCGAATGC 59.329 52.381 0.00 0.00 42.17 3.56
216 217 1.670811 CAGGTATGGTGTTCGAATGCC 59.329 52.381 0.00 7.57 0.00 4.40
217 218 1.280710 AGGTATGGTGTTCGAATGCCA 59.719 47.619 20.73 20.73 35.28 4.92
218 219 1.670811 GGTATGGTGTTCGAATGCCAG 59.329 52.381 22.15 0.00 34.18 4.85
219 220 1.064060 GTATGGTGTTCGAATGCCAGC 59.936 52.381 22.15 16.12 34.18 4.85
220 221 1.315257 ATGGTGTTCGAATGCCAGCC 61.315 55.000 22.15 11.77 34.18 4.85
221 222 2.700773 GGTGTTCGAATGCCAGCCC 61.701 63.158 0.00 0.00 0.00 5.19
222 223 2.361104 TGTTCGAATGCCAGCCCC 60.361 61.111 0.00 0.00 0.00 5.80
223 224 2.361104 GTTCGAATGCCAGCCCCA 60.361 61.111 0.00 0.00 0.00 4.96
224 225 1.976474 GTTCGAATGCCAGCCCCAA 60.976 57.895 0.00 0.00 0.00 4.12
225 226 1.976474 TTCGAATGCCAGCCCCAAC 60.976 57.895 0.00 0.00 0.00 3.77
226 227 3.814268 CGAATGCCAGCCCCAACG 61.814 66.667 0.00 0.00 0.00 4.10
227 228 4.133796 GAATGCCAGCCCCAACGC 62.134 66.667 0.00 0.00 0.00 4.84
228 229 4.992740 AATGCCAGCCCCAACGCA 62.993 61.111 0.00 0.00 35.35 5.24
232 233 2.990967 CCAGCCCCAACGCACAAT 60.991 61.111 0.00 0.00 0.00 2.71
233 234 2.573083 CCAGCCCCAACGCACAATT 61.573 57.895 0.00 0.00 0.00 2.32
234 235 1.367102 CAGCCCCAACGCACAATTT 59.633 52.632 0.00 0.00 0.00 1.82
235 236 0.249826 CAGCCCCAACGCACAATTTT 60.250 50.000 0.00 0.00 0.00 1.82
236 237 0.467804 AGCCCCAACGCACAATTTTT 59.532 45.000 0.00 0.00 0.00 1.94
263 264 9.173021 TCTATGTTGTTTCACCTTATTATGTGG 57.827 33.333 0.00 0.00 33.29 4.17
264 265 7.775053 ATGTTGTTTCACCTTATTATGTGGT 57.225 32.000 0.00 0.00 33.29 4.16
265 266 7.589958 TGTTGTTTCACCTTATTATGTGGTT 57.410 32.000 0.00 0.00 33.29 3.67
266 267 7.653647 TGTTGTTTCACCTTATTATGTGGTTC 58.346 34.615 0.00 0.00 33.29 3.62
267 268 7.504238 TGTTGTTTCACCTTATTATGTGGTTCT 59.496 33.333 0.00 0.00 33.29 3.01
268 269 9.005777 GTTGTTTCACCTTATTATGTGGTTCTA 57.994 33.333 0.00 0.00 33.29 2.10
269 270 8.556213 TGTTTCACCTTATTATGTGGTTCTAC 57.444 34.615 0.00 0.00 33.29 2.59
270 271 7.608761 TGTTTCACCTTATTATGTGGTTCTACC 59.391 37.037 0.00 0.00 39.22 3.18
281 282 3.678056 TGGTTCTACCACTTGCTACTG 57.322 47.619 0.00 0.00 44.79 2.74
282 283 2.289444 TGGTTCTACCACTTGCTACTGC 60.289 50.000 0.00 0.00 44.79 4.40
283 284 2.289444 GGTTCTACCACTTGCTACTGCA 60.289 50.000 0.00 0.00 42.31 4.41
284 285 3.805807 GGTTCTACCACTTGCTACTGCAA 60.806 47.826 3.42 3.42 46.42 4.08
292 293 3.799755 GCTACTGCAAACGGGCCG 61.800 66.667 27.06 27.06 39.41 6.13
293 294 3.124921 CTACTGCAAACGGGCCGG 61.125 66.667 31.78 13.97 0.00 6.13
311 312 4.421515 CCCAGGTCAGCTGCCCTG 62.422 72.222 32.36 32.36 46.43 4.45
312 313 3.644606 CCAGGTCAGCTGCCCTGT 61.645 66.667 34.98 6.38 45.61 4.00
313 314 2.359602 CAGGTCAGCTGCCCTGTG 60.360 66.667 31.26 11.91 42.72 3.66
314 315 4.341783 AGGTCAGCTGCCCTGTGC 62.342 66.667 17.20 0.00 42.38 4.57
316 317 4.687215 GTCAGCTGCCCTGTGCGA 62.687 66.667 9.47 0.00 45.60 5.10
317 318 3.939939 TCAGCTGCCCTGTGCGAA 61.940 61.111 9.47 0.00 45.60 4.70
318 319 2.979676 CAGCTGCCCTGTGCGAAA 60.980 61.111 0.00 0.00 45.60 3.46
319 320 2.670934 AGCTGCCCTGTGCGAAAG 60.671 61.111 0.00 0.00 45.60 2.62
320 321 3.741476 GCTGCCCTGTGCGAAAGG 61.741 66.667 0.00 0.00 45.60 3.11
321 322 3.741476 CTGCCCTGTGCGAAAGGC 61.741 66.667 0.98 0.98 45.60 4.35
330 331 3.497031 GCGAAAGGCGGGCTGTAC 61.497 66.667 4.27 0.00 41.29 2.90
331 332 2.047655 CGAAAGGCGGGCTGTACA 60.048 61.111 4.27 0.00 36.03 2.90
332 333 1.449601 CGAAAGGCGGGCTGTACAT 60.450 57.895 4.27 0.00 36.03 2.29
333 334 0.179094 CGAAAGGCGGGCTGTACATA 60.179 55.000 4.27 0.00 36.03 2.29
334 335 1.296727 GAAAGGCGGGCTGTACATAC 58.703 55.000 4.27 0.00 0.00 2.39
335 336 0.616371 AAAGGCGGGCTGTACATACA 59.384 50.000 4.27 0.00 34.56 2.29
344 345 2.967599 CTGTACATACAGCTCTGCCA 57.032 50.000 6.13 0.00 46.03 4.92
345 346 2.544685 CTGTACATACAGCTCTGCCAC 58.455 52.381 6.13 0.00 46.03 5.01
346 347 1.135112 TGTACATACAGCTCTGCCACG 60.135 52.381 0.00 0.00 0.00 4.94
347 348 1.135083 GTACATACAGCTCTGCCACGT 60.135 52.381 0.00 0.00 0.00 4.49
348 349 1.182667 ACATACAGCTCTGCCACGTA 58.817 50.000 0.00 0.00 0.00 3.57
349 350 1.135083 ACATACAGCTCTGCCACGTAC 60.135 52.381 0.00 0.00 0.00 3.67
350 351 0.100682 ATACAGCTCTGCCACGTACG 59.899 55.000 15.01 15.01 0.00 3.67
351 352 1.929806 TACAGCTCTGCCACGTACGG 61.930 60.000 21.06 8.46 0.00 4.02
352 353 2.675423 AGCTCTGCCACGTACGGA 60.675 61.111 21.06 5.60 0.00 4.69
353 354 2.202623 GCTCTGCCACGTACGGAG 60.203 66.667 21.06 16.05 42.41 4.63
354 355 2.490217 CTCTGCCACGTACGGAGG 59.510 66.667 21.06 20.83 36.97 4.30
355 356 2.282674 TCTGCCACGTACGGAGGT 60.283 61.111 24.02 0.79 0.00 3.85
356 357 2.126071 CTGCCACGTACGGAGGTG 60.126 66.667 24.02 13.61 40.44 4.00
357 358 2.913578 TGCCACGTACGGAGGTGT 60.914 61.111 24.02 0.00 39.36 4.16
358 359 2.431942 GCCACGTACGGAGGTGTG 60.432 66.667 24.02 11.28 39.36 3.82
359 360 3.045142 CCACGTACGGAGGTGTGT 58.955 61.111 21.06 0.00 39.36 3.72
360 361 1.865788 GCCACGTACGGAGGTGTGTA 61.866 60.000 24.02 0.00 39.36 2.90
361 362 0.813184 CCACGTACGGAGGTGTGTAT 59.187 55.000 21.06 0.00 39.36 2.29
362 363 2.016318 CCACGTACGGAGGTGTGTATA 58.984 52.381 21.06 0.00 39.36 1.47
363 364 2.223340 CCACGTACGGAGGTGTGTATAC 60.223 54.545 21.06 0.00 39.36 1.47
364 365 2.017049 ACGTACGGAGGTGTGTATACC 58.983 52.381 21.06 0.00 41.17 2.73
365 366 1.003545 CGTACGGAGGTGTGTATACCG 60.004 57.143 7.57 0.00 45.56 4.02
369 370 3.278367 CGGAGGTGTGTATACCGTATG 57.722 52.381 0.00 0.00 45.56 2.39
370 371 2.880268 CGGAGGTGTGTATACCGTATGA 59.120 50.000 0.00 0.00 45.56 2.15
371 372 3.304257 CGGAGGTGTGTATACCGTATGAC 60.304 52.174 0.00 0.00 45.56 3.06
372 373 3.005155 GGAGGTGTGTATACCGTATGACC 59.995 52.174 0.00 2.87 45.56 4.02
373 374 2.961062 AGGTGTGTATACCGTATGACCC 59.039 50.000 0.00 2.91 45.56 4.46
374 375 2.961062 GGTGTGTATACCGTATGACCCT 59.039 50.000 0.00 0.00 0.00 4.34
375 376 3.385755 GGTGTGTATACCGTATGACCCTT 59.614 47.826 0.00 0.00 0.00 3.95
376 377 4.365723 GTGTGTATACCGTATGACCCTTG 58.634 47.826 0.00 0.00 0.00 3.61
377 378 4.025360 TGTGTATACCGTATGACCCTTGT 58.975 43.478 0.00 0.00 0.00 3.16
378 379 5.067674 GTGTGTATACCGTATGACCCTTGTA 59.932 44.000 0.00 0.00 0.00 2.41
379 380 5.067674 TGTGTATACCGTATGACCCTTGTAC 59.932 44.000 0.00 0.00 0.00 2.90
380 381 3.996150 ATACCGTATGACCCTTGTACG 57.004 47.619 0.00 0.00 40.47 3.67
383 384 2.660189 CGTATGACCCTTGTACGGTT 57.340 50.000 0.00 0.00 37.97 4.44
384 385 2.963432 CGTATGACCCTTGTACGGTTT 58.037 47.619 0.00 0.00 37.97 3.27
385 386 2.669434 CGTATGACCCTTGTACGGTTTG 59.331 50.000 0.00 0.00 37.97 2.93
386 387 2.943036 ATGACCCTTGTACGGTTTGT 57.057 45.000 0.00 0.00 32.27 2.83
387 388 1.956297 TGACCCTTGTACGGTTTGTG 58.044 50.000 0.00 0.00 32.27 3.33
388 389 1.485480 TGACCCTTGTACGGTTTGTGA 59.515 47.619 0.00 0.00 32.27 3.58
389 390 2.140717 GACCCTTGTACGGTTTGTGAG 58.859 52.381 0.00 0.00 32.27 3.51
390 391 1.202722 ACCCTTGTACGGTTTGTGAGG 60.203 52.381 0.00 0.00 0.00 3.86
391 392 1.519408 CCTTGTACGGTTTGTGAGGG 58.481 55.000 0.00 0.00 0.00 4.30
392 393 1.519408 CTTGTACGGTTTGTGAGGGG 58.481 55.000 0.00 0.00 0.00 4.79
393 394 0.108963 TTGTACGGTTTGTGAGGGGG 59.891 55.000 0.00 0.00 0.00 5.40
407 408 3.643398 GGGGGTCTACCGAAGCAT 58.357 61.111 0.00 0.00 41.60 3.79
408 409 1.146263 GGGGGTCTACCGAAGCATG 59.854 63.158 0.00 0.00 41.60 4.06
409 410 1.335132 GGGGGTCTACCGAAGCATGA 61.335 60.000 0.00 0.00 41.60 3.07
410 411 0.179081 GGGGTCTACCGAAGCATGAC 60.179 60.000 0.00 0.00 41.60 3.06
411 412 0.824759 GGGTCTACCGAAGCATGACT 59.175 55.000 0.00 0.00 36.71 3.41
412 413 1.202428 GGGTCTACCGAAGCATGACTC 60.202 57.143 0.00 0.00 36.71 3.36
413 414 1.751924 GGTCTACCGAAGCATGACTCT 59.248 52.381 0.00 0.00 0.00 3.24
414 415 2.166664 GGTCTACCGAAGCATGACTCTT 59.833 50.000 0.00 0.00 0.00 2.85
415 416 3.380637 GGTCTACCGAAGCATGACTCTTA 59.619 47.826 0.00 0.00 0.00 2.10
430 431 6.877668 TGACTCTTATGTGTGGGGTATTTA 57.122 37.500 0.00 0.00 0.00 1.40
438 439 8.508883 TTATGTGTGGGGTATTTAATGTGTAC 57.491 34.615 0.00 0.00 0.00 2.90
445 446 7.281549 GTGGGGTATTTAATGTGTACCACTTAG 59.718 40.741 0.00 0.00 41.46 2.18
464 465 7.819415 CCACTTAGAGATATGTGACAGTTTTCA 59.181 37.037 0.00 0.00 32.72 2.69
467 468 9.429359 CTTAGAGATATGTGACAGTTTTCACTT 57.571 33.333 4.97 1.58 45.34 3.16
476 477 5.963586 GTGACAGTTTTCACTTAGTTTTCCG 59.036 40.000 0.00 0.00 42.36 4.30
498 499 9.575783 TTCCGTTAATTAATTAAGCAATTCACC 57.424 29.630 18.76 5.44 35.88 4.02
540 541 3.955771 TGGAAAAGAAACACTGTACGC 57.044 42.857 0.00 0.00 0.00 4.42
625 626 0.744281 CTCGTTTTGTGGCCAAAGGT 59.256 50.000 7.24 0.00 41.37 3.50
654 1367 4.232221 GACATTTACGTCTTCTTCCACGA 58.768 43.478 0.00 0.00 39.38 4.35
656 1369 2.342910 TTACGTCTTCTTCCACGAGC 57.657 50.000 0.00 0.00 39.38 5.03
767 1485 1.467920 GCTCCTTTCTCACCCATTGG 58.532 55.000 0.00 0.00 37.80 3.16
785 1503 2.093216 GCATCGAACTGAAGCCAGG 58.907 57.895 0.00 0.00 44.60 4.45
839 1563 0.242017 GTGCAGATGACCAACCTTGC 59.758 55.000 0.00 0.00 0.00 4.01
901 1637 1.003851 CACCCTACAAATACCACGCG 58.996 55.000 3.53 3.53 0.00 6.01
902 1638 0.741927 ACCCTACAAATACCACGCGC 60.742 55.000 5.73 0.00 0.00 6.86
903 1639 1.634225 CCTACAAATACCACGCGCG 59.366 57.895 30.96 30.96 0.00 6.86
926 1665 2.796383 CGTACACCTGCTCAGTATCAGC 60.796 54.545 0.00 0.00 37.40 4.26
942 1681 1.004595 CAGCATCACACATCTCCACG 58.995 55.000 0.00 0.00 0.00 4.94
959 1698 4.029809 GGCTAACCACACCGGCCT 62.030 66.667 0.00 0.00 39.68 5.19
960 1699 2.746277 GCTAACCACACCGGCCTG 60.746 66.667 0.00 0.00 39.03 4.85
961 1700 2.747686 CTAACCACACCGGCCTGT 59.252 61.111 0.00 0.00 39.03 4.00
962 1701 1.671054 CTAACCACACCGGCCTGTG 60.671 63.158 24.15 24.15 41.19 3.66
989 1728 2.163818 AGCTTAGCTGCACGTAACAA 57.836 45.000 5.70 0.00 37.57 2.83
993 1732 3.059188 GCTTAGCTGCACGTAACAAGAAA 60.059 43.478 1.02 0.00 0.00 2.52
1015 1754 2.892425 GCATGGCCTCGAGGAACG 60.892 66.667 35.69 19.37 44.09 3.95
1056 1795 2.047844 CTGCTCCTGTCGTGGGTG 60.048 66.667 0.00 0.00 0.00 4.61
1314 2053 1.152368 GGAGGCCAATCCATGAGGG 59.848 63.158 5.01 0.00 39.34 4.30
1328 2067 2.450609 TGAGGGCTTCTTCGTTGTAC 57.549 50.000 0.00 0.00 0.00 2.90
1341 2082 1.421382 GTTGTACCGTGCACGTATGT 58.579 50.000 34.81 27.15 37.74 2.29
1349 2090 0.247145 GTGCACGTATGTAGCGTTGC 60.247 55.000 0.00 0.00 40.90 4.17
1365 2106 2.349438 CGTTGCTCGTGTGCTTGTTTAT 60.349 45.455 0.00 0.00 34.52 1.40
1420 2165 1.146358 GCCGACGTTATCCTGTGAGC 61.146 60.000 0.00 0.00 0.00 4.26
1436 2181 1.999071 GAGCTCCTGCGACTCGTGAT 61.999 60.000 0.87 0.00 45.42 3.06
1437 2182 1.587613 GCTCCTGCGACTCGTGATC 60.588 63.158 0.00 0.00 0.00 2.92
1438 2183 1.064946 CTCCTGCGACTCGTGATCC 59.935 63.158 0.00 0.00 0.00 3.36
1439 2184 1.378646 TCCTGCGACTCGTGATCCT 60.379 57.895 0.00 0.00 0.00 3.24
1440 2185 1.226802 CCTGCGACTCGTGATCCTG 60.227 63.158 0.00 0.00 0.00 3.86
1451 2210 4.059511 CTCGTGATCCTGTCTACGTCTAT 58.940 47.826 0.00 0.00 34.86 1.98
1496 2396 9.177608 GGGATGTACATGTGCATTATATATGTT 57.822 33.333 27.08 5.07 36.05 2.71
1572 2523 9.903682 CAGATAAATGTGTTGACAGAATTTCTT 57.096 29.630 0.00 0.00 34.87 2.52
1581 2532 8.946085 GTGTTGACAGAATTTCTTGTATATCCA 58.054 33.333 0.00 0.00 0.00 3.41
1585 2536 8.717717 TGACAGAATTTCTTGTATATCCAGGAT 58.282 33.333 7.27 7.27 0.00 3.24
1587 2538 8.717717 ACAGAATTTCTTGTATATCCAGGATGA 58.282 33.333 12.80 0.00 39.69 2.92
1588 2539 9.217278 CAGAATTTCTTGTATATCCAGGATGAG 57.783 37.037 12.80 2.76 39.69 2.90
1594 2546 7.615403 TCTTGTATATCCAGGATGAGTAATGC 58.385 38.462 12.80 1.41 39.69 3.56
1647 4736 2.096565 GGACGTTCCGTTTTCTTAGCAC 60.097 50.000 0.00 0.00 41.37 4.40
1664 4753 7.319646 TCTTAGCACATTTCGGCATTTTATTT 58.680 30.769 0.00 0.00 0.00 1.40
1665 4754 7.816995 TCTTAGCACATTTCGGCATTTTATTTT 59.183 29.630 0.00 0.00 0.00 1.82
1666 4755 8.988064 TTAGCACATTTCGGCATTTTATTTTA 57.012 26.923 0.00 0.00 0.00 1.52
1667 4756 9.593134 TTAGCACATTTCGGCATTTTATTTTAT 57.407 25.926 0.00 0.00 0.00 1.40
1668 4757 8.491331 AGCACATTTCGGCATTTTATTTTATT 57.509 26.923 0.00 0.00 0.00 1.40
1669 4758 8.945057 AGCACATTTCGGCATTTTATTTTATTT 58.055 25.926 0.00 0.00 0.00 1.40
1670 4759 9.553418 GCACATTTCGGCATTTTATTTTATTTT 57.447 25.926 0.00 0.00 0.00 1.82
1689 4778 3.971245 TTTTTATTGCTTTGCGGGGAT 57.029 38.095 0.00 0.00 0.00 3.85
1690 4779 3.971245 TTTTATTGCTTTGCGGGGATT 57.029 38.095 0.00 0.00 0.00 3.01
1691 4780 3.971245 TTTATTGCTTTGCGGGGATTT 57.029 38.095 0.00 0.00 0.00 2.17
1692 4781 3.518634 TTATTGCTTTGCGGGGATTTC 57.481 42.857 0.00 0.00 0.00 2.17
1693 4782 0.173255 ATTGCTTTGCGGGGATTTCG 59.827 50.000 0.00 0.00 0.00 3.46
1694 4783 0.891449 TTGCTTTGCGGGGATTTCGA 60.891 50.000 0.00 0.00 0.00 3.71
1695 4784 1.136774 GCTTTGCGGGGATTTCGAC 59.863 57.895 0.00 0.00 0.00 4.20
1696 4785 1.582610 GCTTTGCGGGGATTTCGACA 61.583 55.000 0.00 0.00 0.00 4.35
1697 4786 1.094785 CTTTGCGGGGATTTCGACAT 58.905 50.000 0.00 0.00 0.00 3.06
1698 4787 1.472480 CTTTGCGGGGATTTCGACATT 59.528 47.619 0.00 0.00 0.00 2.71
1699 4788 1.540267 TTGCGGGGATTTCGACATTT 58.460 45.000 0.00 0.00 0.00 2.32
1700 4789 1.540267 TGCGGGGATTTCGACATTTT 58.460 45.000 0.00 0.00 0.00 1.82
1701 4790 2.712709 TGCGGGGATTTCGACATTTTA 58.287 42.857 0.00 0.00 0.00 1.52
1702 4791 3.283751 TGCGGGGATTTCGACATTTTAT 58.716 40.909 0.00 0.00 0.00 1.40
1703 4792 3.697045 TGCGGGGATTTCGACATTTTATT 59.303 39.130 0.00 0.00 0.00 1.40
1865 5119 1.492764 TCAGCCTCTGCATCAGATCA 58.507 50.000 0.00 0.00 39.92 2.92
1940 5195 9.352784 TGTTATACAAAAAGCATGATGTTAAGC 57.647 29.630 0.00 0.00 0.00 3.09
2016 5271 1.628340 ACTGGATCACCATCGAAACCA 59.372 47.619 0.00 0.00 45.87 3.67
2020 5275 2.817258 GGATCACCATCGAAACCAAACA 59.183 45.455 0.00 0.00 35.97 2.83
2029 5284 7.226523 CACCATCGAAACCAAACAGATCATATA 59.773 37.037 0.00 0.00 0.00 0.86
2053 5308 2.337583 CTATATCCCATCGGTTGCACG 58.662 52.381 0.00 0.00 0.00 5.34
2084 5339 3.695060 ACATGAACACCTAGACCTCTACG 59.305 47.826 0.00 0.00 0.00 3.51
2110 5365 1.964223 CAGGGAGGATGTAGCGTGTAT 59.036 52.381 0.00 0.00 0.00 2.29
2114 5369 3.181469 GGGAGGATGTAGCGTGTATGAAA 60.181 47.826 0.00 0.00 0.00 2.69
2122 5377 1.206132 AGCGTGTATGAAACCATCCGA 59.794 47.619 0.00 0.00 0.00 4.55
2166 6010 0.523072 TTTTTCGAGCTCAGGCATGC 59.477 50.000 15.40 9.90 41.70 4.06
2185 6029 6.197096 GGCATGCTAAAGACAAAATCATTACG 59.803 38.462 18.92 0.00 0.00 3.18
2226 6101 1.449601 GTACAGACGCCCCACATGG 60.450 63.158 0.00 0.00 0.00 3.66
2255 6130 2.420687 CCTTGAGCTTAGGATGGACACC 60.421 54.545 9.63 0.00 34.56 4.16
2289 6164 8.978564 AGTTCTCGAACATATTAGATATGCTG 57.021 34.615 11.90 0.11 45.05 4.41
2301 6176 1.212935 GATATGCTGGTTGGAGGTGGT 59.787 52.381 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.076863 CGGACCTCTTGCGAGATTTTT 58.923 47.619 3.51 0.00 42.80 1.94
22 23 1.002087 ACGGACCTCTTGCGAGATTTT 59.998 47.619 3.51 0.00 42.80 1.82
23 24 0.608640 ACGGACCTCTTGCGAGATTT 59.391 50.000 3.51 0.00 42.80 2.17
24 25 0.608640 AACGGACCTCTTGCGAGATT 59.391 50.000 3.51 0.00 42.80 2.40
25 26 0.108615 CAACGGACCTCTTGCGAGAT 60.109 55.000 3.51 0.00 42.80 2.75
26 27 1.289066 CAACGGACCTCTTGCGAGA 59.711 57.895 2.99 2.99 42.80 4.04
27 28 0.600255 AACAACGGACCTCTTGCGAG 60.600 55.000 0.00 0.00 42.80 5.03
28 29 0.599204 GAACAACGGACCTCTTGCGA 60.599 55.000 0.00 0.00 42.80 5.10
29 30 0.878523 TGAACAACGGACCTCTTGCG 60.879 55.000 0.00 0.00 46.25 4.85
30 31 1.305201 TTGAACAACGGACCTCTTGC 58.695 50.000 0.00 0.00 0.00 4.01
31 32 3.853307 GCAATTGAACAACGGACCTCTTG 60.853 47.826 10.34 0.00 0.00 3.02
32 33 2.293399 GCAATTGAACAACGGACCTCTT 59.707 45.455 10.34 0.00 0.00 2.85
33 34 1.880027 GCAATTGAACAACGGACCTCT 59.120 47.619 10.34 0.00 0.00 3.69
34 35 1.068541 GGCAATTGAACAACGGACCTC 60.069 52.381 10.34 0.00 0.00 3.85
35 36 0.958822 GGCAATTGAACAACGGACCT 59.041 50.000 10.34 0.00 0.00 3.85
36 37 0.038618 GGGCAATTGAACAACGGACC 60.039 55.000 10.34 0.00 0.00 4.46
37 38 0.386731 CGGGCAATTGAACAACGGAC 60.387 55.000 10.34 0.00 0.00 4.79
38 39 1.953017 CGGGCAATTGAACAACGGA 59.047 52.632 10.34 0.00 0.00 4.69
39 40 1.732683 GCGGGCAATTGAACAACGG 60.733 57.895 10.34 0.00 0.00 4.44
40 41 1.007964 TGCGGGCAATTGAACAACG 60.008 52.632 10.34 6.48 0.00 4.10
41 42 0.249238 TGTGCGGGCAATTGAACAAC 60.249 50.000 10.34 0.90 0.00 3.32
42 43 0.031857 CTGTGCGGGCAATTGAACAA 59.968 50.000 10.34 0.00 0.00 2.83
43 44 0.821301 TCTGTGCGGGCAATTGAACA 60.821 50.000 10.34 4.16 0.00 3.18
44 45 0.387239 GTCTGTGCGGGCAATTGAAC 60.387 55.000 10.34 0.37 0.00 3.18
45 46 0.537143 AGTCTGTGCGGGCAATTGAA 60.537 50.000 10.34 0.00 0.00 2.69
46 47 0.537143 AAGTCTGTGCGGGCAATTGA 60.537 50.000 10.34 0.00 0.00 2.57
47 48 0.387622 CAAGTCTGTGCGGGCAATTG 60.388 55.000 0.00 0.00 0.00 2.32
48 49 0.537143 TCAAGTCTGTGCGGGCAATT 60.537 50.000 0.00 0.00 0.00 2.32
49 50 0.957395 CTCAAGTCTGTGCGGGCAAT 60.957 55.000 0.00 0.00 0.00 3.56
50 51 1.597854 CTCAAGTCTGTGCGGGCAA 60.598 57.895 0.00 0.00 0.00 4.52
51 52 2.031012 CTCAAGTCTGTGCGGGCA 59.969 61.111 0.00 0.00 0.00 5.36
52 53 1.166531 AAACTCAAGTCTGTGCGGGC 61.167 55.000 0.00 0.00 0.00 6.13
53 54 1.002468 CAAAACTCAAGTCTGTGCGGG 60.002 52.381 0.00 0.00 0.00 6.13
54 55 1.002468 CCAAAACTCAAGTCTGTGCGG 60.002 52.381 0.00 0.00 0.00 5.69
55 56 1.002468 CCCAAAACTCAAGTCTGTGCG 60.002 52.381 0.00 0.00 0.00 5.34
56 57 2.297701 TCCCAAAACTCAAGTCTGTGC 58.702 47.619 0.00 0.00 0.00 4.57
57 58 5.520376 AATTCCCAAAACTCAAGTCTGTG 57.480 39.130 0.00 0.00 0.00 3.66
58 59 5.893824 AGAAATTCCCAAAACTCAAGTCTGT 59.106 36.000 0.00 0.00 0.00 3.41
59 60 6.211515 CAGAAATTCCCAAAACTCAAGTCTG 58.788 40.000 0.00 0.00 0.00 3.51
60 61 5.221322 GCAGAAATTCCCAAAACTCAAGTCT 60.221 40.000 0.00 0.00 0.00 3.24
61 62 4.984785 GCAGAAATTCCCAAAACTCAAGTC 59.015 41.667 0.00 0.00 0.00 3.01
62 63 4.651045 AGCAGAAATTCCCAAAACTCAAGT 59.349 37.500 0.00 0.00 0.00 3.16
63 64 5.205759 AGCAGAAATTCCCAAAACTCAAG 57.794 39.130 0.00 0.00 0.00 3.02
64 65 6.323739 AGTTAGCAGAAATTCCCAAAACTCAA 59.676 34.615 0.00 0.00 0.00 3.02
65 66 5.833131 AGTTAGCAGAAATTCCCAAAACTCA 59.167 36.000 0.00 0.00 0.00 3.41
66 67 6.152379 CAGTTAGCAGAAATTCCCAAAACTC 58.848 40.000 0.00 0.00 0.00 3.01
67 68 5.509670 GCAGTTAGCAGAAATTCCCAAAACT 60.510 40.000 0.00 0.00 44.79 2.66
68 69 4.686091 GCAGTTAGCAGAAATTCCCAAAAC 59.314 41.667 0.00 0.00 44.79 2.43
69 70 4.881920 GCAGTTAGCAGAAATTCCCAAAA 58.118 39.130 0.00 0.00 44.79 2.44
70 71 4.519540 GCAGTTAGCAGAAATTCCCAAA 57.480 40.909 0.00 0.00 44.79 3.28
83 84 5.175673 CAGCAAAACTTAAAAGGCAGTTAGC 59.824 40.000 0.00 0.00 44.65 3.09
84 85 5.175673 GCAGCAAAACTTAAAAGGCAGTTAG 59.824 40.000 0.00 0.00 32.74 2.34
85 86 5.047188 GCAGCAAAACTTAAAAGGCAGTTA 58.953 37.500 0.00 0.00 32.74 2.24
86 87 3.871006 GCAGCAAAACTTAAAAGGCAGTT 59.129 39.130 0.00 0.00 34.58 3.16
87 88 3.132824 AGCAGCAAAACTTAAAAGGCAGT 59.867 39.130 0.00 0.00 0.00 4.40
88 89 3.721035 AGCAGCAAAACTTAAAAGGCAG 58.279 40.909 0.00 0.00 0.00 4.85
89 90 3.384467 AGAGCAGCAAAACTTAAAAGGCA 59.616 39.130 0.00 0.00 0.00 4.75
90 91 3.982475 AGAGCAGCAAAACTTAAAAGGC 58.018 40.909 0.00 0.00 0.00 4.35
91 92 5.444663 AGAGAGCAGCAAAACTTAAAAGG 57.555 39.130 0.00 0.00 0.00 3.11
92 93 6.733145 AGAAGAGAGCAGCAAAACTTAAAAG 58.267 36.000 0.00 0.00 0.00 2.27
93 94 6.543831 AGAGAAGAGAGCAGCAAAACTTAAAA 59.456 34.615 0.00 0.00 0.00 1.52
94 95 6.058183 AGAGAAGAGAGCAGCAAAACTTAAA 58.942 36.000 0.00 0.00 0.00 1.52
95 96 5.615289 AGAGAAGAGAGCAGCAAAACTTAA 58.385 37.500 0.00 0.00 0.00 1.85
96 97 5.220710 AGAGAAGAGAGCAGCAAAACTTA 57.779 39.130 0.00 0.00 0.00 2.24
97 98 4.084011 AGAGAAGAGAGCAGCAAAACTT 57.916 40.909 0.00 0.00 0.00 2.66
98 99 3.767902 AGAGAAGAGAGCAGCAAAACT 57.232 42.857 0.00 0.00 0.00 2.66
99 100 4.514816 AGAAAGAGAAGAGAGCAGCAAAAC 59.485 41.667 0.00 0.00 0.00 2.43
100 101 4.712476 AGAAAGAGAAGAGAGCAGCAAAA 58.288 39.130 0.00 0.00 0.00 2.44
101 102 4.348863 AGAAAGAGAAGAGAGCAGCAAA 57.651 40.909 0.00 0.00 0.00 3.68
102 103 4.348863 AAGAAAGAGAAGAGAGCAGCAA 57.651 40.909 0.00 0.00 0.00 3.91
103 104 4.348863 AAAGAAAGAGAAGAGAGCAGCA 57.651 40.909 0.00 0.00 0.00 4.41
104 105 6.593382 TCATTAAAGAAAGAGAAGAGAGCAGC 59.407 38.462 0.00 0.00 0.00 5.25
105 106 8.605746 CATCATTAAAGAAAGAGAAGAGAGCAG 58.394 37.037 0.00 0.00 0.00 4.24
106 107 7.551974 CCATCATTAAAGAAAGAGAAGAGAGCA 59.448 37.037 0.00 0.00 0.00 4.26
107 108 7.012232 CCCATCATTAAAGAAAGAGAAGAGAGC 59.988 40.741 0.00 0.00 0.00 4.09
108 109 8.263640 TCCCATCATTAAAGAAAGAGAAGAGAG 58.736 37.037 0.00 0.00 0.00 3.20
109 110 8.150827 TCCCATCATTAAAGAAAGAGAAGAGA 57.849 34.615 0.00 0.00 0.00 3.10
110 111 8.977267 ATCCCATCATTAAAGAAAGAGAAGAG 57.023 34.615 0.00 0.00 0.00 2.85
111 112 9.182214 CAATCCCATCATTAAAGAAAGAGAAGA 57.818 33.333 0.00 0.00 0.00 2.87
112 113 7.919621 GCAATCCCATCATTAAAGAAAGAGAAG 59.080 37.037 0.00 0.00 0.00 2.85
113 114 7.396907 TGCAATCCCATCATTAAAGAAAGAGAA 59.603 33.333 0.00 0.00 0.00 2.87
114 115 6.891361 TGCAATCCCATCATTAAAGAAAGAGA 59.109 34.615 0.00 0.00 0.00 3.10
115 116 7.104043 TGCAATCCCATCATTAAAGAAAGAG 57.896 36.000 0.00 0.00 0.00 2.85
116 117 7.479352 TTGCAATCCCATCATTAAAGAAAGA 57.521 32.000 0.00 0.00 0.00 2.52
117 118 7.064966 GGTTTGCAATCCCATCATTAAAGAAAG 59.935 37.037 14.63 0.00 0.00 2.62
118 119 6.878389 GGTTTGCAATCCCATCATTAAAGAAA 59.122 34.615 14.63 0.00 0.00 2.52
119 120 6.213195 AGGTTTGCAATCCCATCATTAAAGAA 59.787 34.615 20.61 0.00 0.00 2.52
120 121 5.721000 AGGTTTGCAATCCCATCATTAAAGA 59.279 36.000 20.61 0.00 0.00 2.52
121 122 5.981174 AGGTTTGCAATCCCATCATTAAAG 58.019 37.500 20.61 0.00 0.00 1.85
122 123 7.487822 TTAGGTTTGCAATCCCATCATTAAA 57.512 32.000 20.61 3.10 0.00 1.52
123 124 7.673641 ATTAGGTTTGCAATCCCATCATTAA 57.326 32.000 20.61 12.68 0.00 1.40
124 125 7.782168 TGTATTAGGTTTGCAATCCCATCATTA 59.218 33.333 20.61 5.14 0.00 1.90
125 126 6.610830 TGTATTAGGTTTGCAATCCCATCATT 59.389 34.615 20.61 6.04 0.00 2.57
126 127 6.135454 TGTATTAGGTTTGCAATCCCATCAT 58.865 36.000 20.61 11.21 0.00 2.45
127 128 5.514169 TGTATTAGGTTTGCAATCCCATCA 58.486 37.500 20.61 11.46 0.00 3.07
128 129 6.321181 TCTTGTATTAGGTTTGCAATCCCATC 59.679 38.462 20.61 9.43 0.00 3.51
129 130 6.194235 TCTTGTATTAGGTTTGCAATCCCAT 58.806 36.000 20.61 15.63 0.00 4.00
130 131 5.575157 TCTTGTATTAGGTTTGCAATCCCA 58.425 37.500 20.61 6.75 0.00 4.37
131 132 6.330278 GTTCTTGTATTAGGTTTGCAATCCC 58.670 40.000 20.61 14.04 0.00 3.85
132 133 6.152831 AGGTTCTTGTATTAGGTTTGCAATCC 59.847 38.462 17.34 17.34 0.00 3.01
133 134 7.158099 AGGTTCTTGTATTAGGTTTGCAATC 57.842 36.000 0.00 0.00 0.00 2.67
134 135 7.378181 CAAGGTTCTTGTATTAGGTTTGCAAT 58.622 34.615 0.00 0.00 0.00 3.56
135 136 6.239176 CCAAGGTTCTTGTATTAGGTTTGCAA 60.239 38.462 0.00 0.00 0.00 4.08
136 137 5.242838 CCAAGGTTCTTGTATTAGGTTTGCA 59.757 40.000 6.86 0.00 0.00 4.08
137 138 5.243060 ACCAAGGTTCTTGTATTAGGTTTGC 59.757 40.000 6.86 0.00 0.00 3.68
138 139 6.677913 CACCAAGGTTCTTGTATTAGGTTTG 58.322 40.000 6.86 0.00 0.00 2.93
139 140 5.243060 GCACCAAGGTTCTTGTATTAGGTTT 59.757 40.000 6.86 0.00 0.00 3.27
140 141 4.765339 GCACCAAGGTTCTTGTATTAGGTT 59.235 41.667 6.86 0.00 0.00 3.50
141 142 4.332828 GCACCAAGGTTCTTGTATTAGGT 58.667 43.478 6.86 0.00 0.00 3.08
142 143 3.694566 GGCACCAAGGTTCTTGTATTAGG 59.305 47.826 6.86 0.00 0.00 2.69
143 144 3.374058 CGGCACCAAGGTTCTTGTATTAG 59.626 47.826 6.86 0.00 0.00 1.73
144 145 3.340034 CGGCACCAAGGTTCTTGTATTA 58.660 45.455 6.86 0.00 0.00 0.98
145 146 2.159382 CGGCACCAAGGTTCTTGTATT 58.841 47.619 6.86 0.00 0.00 1.89
146 147 1.821216 CGGCACCAAGGTTCTTGTAT 58.179 50.000 6.86 0.00 0.00 2.29
147 148 0.887387 GCGGCACCAAGGTTCTTGTA 60.887 55.000 0.00 0.00 0.00 2.41
148 149 2.193536 GCGGCACCAAGGTTCTTGT 61.194 57.895 0.00 0.00 0.00 3.16
149 150 2.644992 GCGGCACCAAGGTTCTTG 59.355 61.111 0.00 1.00 0.00 3.02
150 151 2.978010 CGCGGCACCAAGGTTCTT 60.978 61.111 0.00 0.00 0.00 2.52
157 158 4.251771 TAACCACCGCGGCACCAA 62.252 61.111 28.58 5.35 39.03 3.67
158 159 4.690719 CTAACCACCGCGGCACCA 62.691 66.667 28.58 5.91 39.03 4.17
161 162 4.627801 TTGCTAACCACCGCGGCA 62.628 61.111 28.58 13.04 39.03 5.69
162 163 3.322706 CTTTGCTAACCACCGCGGC 62.323 63.158 28.58 10.03 39.03 6.53
163 164 1.964373 ACTTTGCTAACCACCGCGG 60.964 57.895 26.86 26.86 42.50 6.46
164 165 1.206578 CACTTTGCTAACCACCGCG 59.793 57.895 0.00 0.00 0.00 6.46
165 166 1.081442 GCACTTTGCTAACCACCGC 60.081 57.895 0.00 0.00 40.96 5.68
166 167 1.206578 CGCACTTTGCTAACCACCG 59.793 57.895 0.00 0.00 42.25 4.94
167 168 1.081442 GCGCACTTTGCTAACCACC 60.081 57.895 0.30 0.00 42.25 4.61
168 169 0.310854 AAGCGCACTTTGCTAACCAC 59.689 50.000 11.47 0.00 43.14 4.16
169 170 1.533731 GTAAGCGCACTTTGCTAACCA 59.466 47.619 11.47 0.00 43.14 3.67
170 171 1.804748 AGTAAGCGCACTTTGCTAACC 59.195 47.619 11.47 0.00 43.14 2.85
171 172 3.479949 GAAGTAAGCGCACTTTGCTAAC 58.520 45.455 11.47 0.00 43.14 2.34
172 173 2.482721 GGAAGTAAGCGCACTTTGCTAA 59.517 45.455 11.47 0.00 43.14 3.09
173 174 2.073816 GGAAGTAAGCGCACTTTGCTA 58.926 47.619 11.47 0.00 43.14 3.49
174 175 0.875059 GGAAGTAAGCGCACTTTGCT 59.125 50.000 11.47 0.55 46.68 3.91
175 176 0.591170 TGGAAGTAAGCGCACTTTGC 59.409 50.000 11.47 4.30 38.86 3.68
176 177 1.069227 GGTGGAAGTAAGCGCACTTTG 60.069 52.381 11.47 0.00 38.86 2.77
177 178 1.235724 GGTGGAAGTAAGCGCACTTT 58.764 50.000 11.47 0.00 38.86 2.66
178 179 0.107831 TGGTGGAAGTAAGCGCACTT 59.892 50.000 11.47 12.06 41.44 3.16
179 180 0.320771 CTGGTGGAAGTAAGCGCACT 60.321 55.000 11.47 1.27 0.00 4.40
180 181 1.298859 CCTGGTGGAAGTAAGCGCAC 61.299 60.000 11.47 0.00 34.57 5.34
181 182 1.003839 CCTGGTGGAAGTAAGCGCA 60.004 57.895 11.47 0.00 34.57 6.09
182 183 0.248289 TACCTGGTGGAAGTAAGCGC 59.752 55.000 10.23 0.00 37.04 5.92
183 184 2.550978 CATACCTGGTGGAAGTAAGCG 58.449 52.381 10.23 0.00 37.04 4.68
184 185 2.919228 CCATACCTGGTGGAAGTAAGC 58.081 52.381 10.23 0.00 39.12 3.09
196 197 1.670811 GGCATTCGAACACCATACCTG 59.329 52.381 12.31 0.00 0.00 4.00
197 198 1.280710 TGGCATTCGAACACCATACCT 59.719 47.619 15.22 0.00 0.00 3.08
198 199 1.670811 CTGGCATTCGAACACCATACC 59.329 52.381 18.50 5.87 0.00 2.73
199 200 1.064060 GCTGGCATTCGAACACCATAC 59.936 52.381 18.50 11.74 0.00 2.39
200 201 1.378531 GCTGGCATTCGAACACCATA 58.621 50.000 18.50 0.87 0.00 2.74
201 202 1.315257 GGCTGGCATTCGAACACCAT 61.315 55.000 18.50 0.00 0.00 3.55
202 203 1.971167 GGCTGGCATTCGAACACCA 60.971 57.895 17.50 17.50 0.00 4.17
203 204 2.700773 GGGCTGGCATTCGAACACC 61.701 63.158 0.00 5.58 0.00 4.16
204 205 2.700773 GGGGCTGGCATTCGAACAC 61.701 63.158 0.00 0.00 0.00 3.32
205 206 2.361104 GGGGCTGGCATTCGAACA 60.361 61.111 0.00 0.00 0.00 3.18
206 207 1.976474 TTGGGGCTGGCATTCGAAC 60.976 57.895 0.00 0.00 0.00 3.95
207 208 1.976474 GTTGGGGCTGGCATTCGAA 60.976 57.895 0.00 0.00 0.00 3.71
208 209 2.361104 GTTGGGGCTGGCATTCGA 60.361 61.111 2.88 0.00 0.00 3.71
209 210 3.814268 CGTTGGGGCTGGCATTCG 61.814 66.667 2.88 0.00 0.00 3.34
210 211 4.133796 GCGTTGGGGCTGGCATTC 62.134 66.667 2.88 0.00 0.00 2.67
211 212 4.992740 TGCGTTGGGGCTGGCATT 62.993 61.111 2.88 0.00 0.00 3.56
215 216 2.098426 AAATTGTGCGTTGGGGCTGG 62.098 55.000 0.00 0.00 0.00 4.85
216 217 0.249826 AAAATTGTGCGTTGGGGCTG 60.250 50.000 0.00 0.00 0.00 4.85
217 218 0.467804 AAAAATTGTGCGTTGGGGCT 59.532 45.000 0.00 0.00 0.00 5.19
218 219 2.999356 AAAAATTGTGCGTTGGGGC 58.001 47.368 0.00 0.00 0.00 5.80
237 238 9.173021 CCACATAATAAGGTGAAACAACATAGA 57.827 33.333 0.00 0.00 39.79 1.98
238 239 8.956426 ACCACATAATAAGGTGAAACAACATAG 58.044 33.333 0.00 0.00 39.79 2.23
239 240 8.871629 ACCACATAATAAGGTGAAACAACATA 57.128 30.769 0.00 0.00 39.79 2.29
240 241 7.775053 ACCACATAATAAGGTGAAACAACAT 57.225 32.000 0.00 0.00 39.79 2.71
241 242 7.504238 AGAACCACATAATAAGGTGAAACAACA 59.496 33.333 0.00 0.00 39.79 3.33
242 243 7.882179 AGAACCACATAATAAGGTGAAACAAC 58.118 34.615 0.00 0.00 39.79 3.32
243 244 9.005777 GTAGAACCACATAATAAGGTGAAACAA 57.994 33.333 0.00 0.00 39.79 2.83
244 245 7.608761 GGTAGAACCACATAATAAGGTGAAACA 59.391 37.037 0.00 0.00 39.79 2.83
245 246 7.608761 TGGTAGAACCACATAATAAGGTGAAAC 59.391 37.037 0.00 0.00 44.79 2.78
246 247 7.691213 TGGTAGAACCACATAATAAGGTGAAA 58.309 34.615 0.00 0.00 44.79 2.69
247 248 7.260387 TGGTAGAACCACATAATAAGGTGAA 57.740 36.000 0.00 0.00 44.79 3.18
248 249 6.877668 TGGTAGAACCACATAATAAGGTGA 57.122 37.500 0.00 0.00 44.79 4.02
261 262 2.289444 GCAGTAGCAAGTGGTAGAACCA 60.289 50.000 0.00 0.00 43.20 3.67
262 263 2.347731 GCAGTAGCAAGTGGTAGAACC 58.652 52.381 0.00 0.00 41.58 3.62
275 276 3.799755 CGGCCCGTTTGCAGTAGC 61.800 66.667 0.00 0.00 42.57 3.58
276 277 3.124921 CCGGCCCGTTTGCAGTAG 61.125 66.667 0.85 0.00 0.00 2.57
299 300 4.687215 TCGCACAGGGCAGCTGAC 62.687 66.667 20.43 16.66 45.17 3.51
300 301 3.474486 TTTCGCACAGGGCAGCTGA 62.474 57.895 20.43 0.00 45.17 4.26
301 302 2.974489 CTTTCGCACAGGGCAGCTG 61.974 63.158 10.11 10.11 45.17 4.24
302 303 2.670934 CTTTCGCACAGGGCAGCT 60.671 61.111 0.00 0.00 45.17 4.24
303 304 3.741476 CCTTTCGCACAGGGCAGC 61.741 66.667 0.00 0.00 45.17 5.25
304 305 3.741476 GCCTTTCGCACAGGGCAG 61.741 66.667 0.00 0.00 45.17 4.85
312 313 4.010224 TACAGCCCGCCTTTCGCA 62.010 61.111 0.00 0.00 37.30 5.10
313 314 3.497031 GTACAGCCCGCCTTTCGC 61.497 66.667 0.00 0.00 36.73 4.70
314 315 0.179094 TATGTACAGCCCGCCTTTCG 60.179 55.000 0.33 0.00 38.08 3.46
315 316 1.296727 GTATGTACAGCCCGCCTTTC 58.703 55.000 0.33 0.00 0.00 2.62
316 317 0.616371 TGTATGTACAGCCCGCCTTT 59.384 50.000 0.33 0.00 0.00 3.11
317 318 0.178068 CTGTATGTACAGCCCGCCTT 59.822 55.000 7.20 0.00 46.03 4.35
318 319 1.823295 CTGTATGTACAGCCCGCCT 59.177 57.895 7.20 0.00 46.03 5.52
319 320 4.438346 CTGTATGTACAGCCCGCC 57.562 61.111 7.20 0.00 46.03 6.13
326 327 1.135112 CGTGGCAGAGCTGTATGTACA 60.135 52.381 0.00 0.00 34.56 2.90
327 328 1.135083 ACGTGGCAGAGCTGTATGTAC 60.135 52.381 0.00 0.00 0.00 2.90
328 329 1.182667 ACGTGGCAGAGCTGTATGTA 58.817 50.000 0.00 0.00 0.00 2.29
329 330 1.135083 GTACGTGGCAGAGCTGTATGT 60.135 52.381 0.00 3.80 0.00 2.29
330 331 1.560923 GTACGTGGCAGAGCTGTATG 58.439 55.000 0.00 0.00 0.00 2.39
331 332 0.100682 CGTACGTGGCAGAGCTGTAT 59.899 55.000 7.22 0.00 0.00 2.29
332 333 1.504900 CGTACGTGGCAGAGCTGTA 59.495 57.895 7.22 0.00 0.00 2.74
333 334 2.258591 CGTACGTGGCAGAGCTGT 59.741 61.111 7.22 0.00 0.00 4.40
334 335 2.507102 CCGTACGTGGCAGAGCTG 60.507 66.667 15.21 0.00 0.00 4.24
335 336 2.675423 TCCGTACGTGGCAGAGCT 60.675 61.111 15.21 0.00 0.00 4.09
336 337 2.202623 CTCCGTACGTGGCAGAGC 60.203 66.667 15.21 0.00 0.00 4.09
337 338 2.341101 ACCTCCGTACGTGGCAGAG 61.341 63.158 20.01 15.31 0.00 3.35
338 339 2.282674 ACCTCCGTACGTGGCAGA 60.283 61.111 20.01 7.55 0.00 4.26
339 340 2.126071 CACCTCCGTACGTGGCAG 60.126 66.667 20.01 11.82 0.00 4.85
340 341 2.913578 ACACCTCCGTACGTGGCA 60.914 61.111 20.01 0.00 34.18 4.92
341 342 1.865788 TACACACCTCCGTACGTGGC 61.866 60.000 20.01 0.00 34.18 5.01
342 343 0.813184 ATACACACCTCCGTACGTGG 59.187 55.000 15.21 17.40 34.18 4.94
343 344 2.223340 GGTATACACACCTCCGTACGTG 60.223 54.545 15.21 8.29 35.55 4.49
344 345 2.017049 GGTATACACACCTCCGTACGT 58.983 52.381 15.21 0.00 35.55 3.57
345 346 1.003545 CGGTATACACACCTCCGTACG 60.004 57.143 8.69 8.69 36.35 3.67
346 347 2.763249 CGGTATACACACCTCCGTAC 57.237 55.000 5.01 0.00 36.35 3.67
349 350 2.880268 TCATACGGTATACACACCTCCG 59.120 50.000 5.01 0.00 45.53 4.63
350 351 3.005155 GGTCATACGGTATACACACCTCC 59.995 52.174 5.01 0.00 36.35 4.30
351 352 3.005155 GGGTCATACGGTATACACACCTC 59.995 52.174 5.01 0.00 36.35 3.85
352 353 2.961062 GGGTCATACGGTATACACACCT 59.039 50.000 5.01 0.00 36.35 4.00
353 354 2.961062 AGGGTCATACGGTATACACACC 59.039 50.000 5.01 5.07 35.04 4.16
354 355 4.142093 ACAAGGGTCATACGGTATACACAC 60.142 45.833 5.01 2.31 0.00 3.82
355 356 4.025360 ACAAGGGTCATACGGTATACACA 58.975 43.478 5.01 0.00 0.00 3.72
356 357 4.660789 ACAAGGGTCATACGGTATACAC 57.339 45.455 5.01 1.10 0.00 2.90
357 358 4.275689 CGTACAAGGGTCATACGGTATACA 59.724 45.833 5.01 0.00 38.38 2.29
358 359 4.787598 CGTACAAGGGTCATACGGTATAC 58.212 47.826 0.00 0.00 38.38 1.47
360 361 3.996150 CGTACAAGGGTCATACGGTAT 57.004 47.619 0.00 0.00 38.38 2.73
364 365 2.660189 AACCGTACAAGGGTCATACG 57.340 50.000 0.00 0.00 41.01 3.06
365 366 3.434299 CACAAACCGTACAAGGGTCATAC 59.566 47.826 0.00 0.00 34.89 2.39
366 367 3.324268 TCACAAACCGTACAAGGGTCATA 59.676 43.478 0.00 0.00 34.89 2.15
367 368 2.105134 TCACAAACCGTACAAGGGTCAT 59.895 45.455 0.00 0.00 34.89 3.06
368 369 1.485480 TCACAAACCGTACAAGGGTCA 59.515 47.619 0.00 0.00 34.89 4.02
369 370 2.140717 CTCACAAACCGTACAAGGGTC 58.859 52.381 0.00 0.00 34.89 4.46
370 371 1.202722 CCTCACAAACCGTACAAGGGT 60.203 52.381 0.00 0.00 38.12 4.34
371 372 1.519408 CCTCACAAACCGTACAAGGG 58.481 55.000 0.00 0.00 35.02 3.95
372 373 1.519408 CCCTCACAAACCGTACAAGG 58.481 55.000 0.00 0.00 37.30 3.61
373 374 1.519408 CCCCTCACAAACCGTACAAG 58.481 55.000 0.00 0.00 0.00 3.16
374 375 0.108963 CCCCCTCACAAACCGTACAA 59.891 55.000 0.00 0.00 0.00 2.41
375 376 1.756024 CCCCCTCACAAACCGTACA 59.244 57.895 0.00 0.00 0.00 2.90
376 377 4.707791 CCCCCTCACAAACCGTAC 57.292 61.111 0.00 0.00 0.00 3.67
390 391 1.146263 CATGCTTCGGTAGACCCCC 59.854 63.158 0.00 0.00 0.00 5.40
391 392 0.179081 GTCATGCTTCGGTAGACCCC 60.179 60.000 0.00 0.00 0.00 4.95
392 393 0.824759 AGTCATGCTTCGGTAGACCC 59.175 55.000 0.00 0.00 0.00 4.46
393 394 1.751924 AGAGTCATGCTTCGGTAGACC 59.248 52.381 0.00 0.00 0.00 3.85
394 395 3.512033 AAGAGTCATGCTTCGGTAGAC 57.488 47.619 0.00 0.00 0.00 2.59
395 396 4.645136 ACATAAGAGTCATGCTTCGGTAGA 59.355 41.667 0.00 0.00 0.00 2.59
396 397 4.742167 CACATAAGAGTCATGCTTCGGTAG 59.258 45.833 0.00 0.00 0.00 3.18
397 398 4.159693 ACACATAAGAGTCATGCTTCGGTA 59.840 41.667 0.00 0.00 0.00 4.02
398 399 3.055819 ACACATAAGAGTCATGCTTCGGT 60.056 43.478 0.00 0.00 0.00 4.69
399 400 3.308053 CACACATAAGAGTCATGCTTCGG 59.692 47.826 0.00 0.00 0.00 4.30
400 401 3.308053 CCACACATAAGAGTCATGCTTCG 59.692 47.826 0.00 0.00 0.00 3.79
401 402 3.624861 CCCACACATAAGAGTCATGCTTC 59.375 47.826 0.00 0.00 0.00 3.86
402 403 3.614092 CCCACACATAAGAGTCATGCTT 58.386 45.455 0.00 0.00 0.00 3.91
403 404 2.092753 CCCCACACATAAGAGTCATGCT 60.093 50.000 0.00 0.00 0.00 3.79
404 405 2.292267 CCCCACACATAAGAGTCATGC 58.708 52.381 0.00 0.00 0.00 4.06
405 406 3.634397 ACCCCACACATAAGAGTCATG 57.366 47.619 0.00 0.00 0.00 3.07
406 407 5.975988 AATACCCCACACATAAGAGTCAT 57.024 39.130 0.00 0.00 0.00 3.06
407 408 5.772393 AAATACCCCACACATAAGAGTCA 57.228 39.130 0.00 0.00 0.00 3.41
408 409 7.773690 ACATTAAATACCCCACACATAAGAGTC 59.226 37.037 0.00 0.00 0.00 3.36
409 410 7.556275 CACATTAAATACCCCACACATAAGAGT 59.444 37.037 0.00 0.00 0.00 3.24
410 411 7.556275 ACACATTAAATACCCCACACATAAGAG 59.444 37.037 0.00 0.00 0.00 2.85
411 412 7.406916 ACACATTAAATACCCCACACATAAGA 58.593 34.615 0.00 0.00 0.00 2.10
412 413 7.639113 ACACATTAAATACCCCACACATAAG 57.361 36.000 0.00 0.00 0.00 1.73
413 414 7.556996 GGTACACATTAAATACCCCACACATAA 59.443 37.037 0.00 0.00 33.54 1.90
414 415 7.055378 GGTACACATTAAATACCCCACACATA 58.945 38.462 0.00 0.00 33.54 2.29
415 416 5.889289 GGTACACATTAAATACCCCACACAT 59.111 40.000 0.00 0.00 33.54 3.21
438 439 7.819415 TGAAAACTGTCACATATCTCTAAGTGG 59.181 37.037 0.00 0.00 33.01 4.00
453 454 5.644636 ACGGAAAACTAAGTGAAAACTGTCA 59.355 36.000 0.00 0.00 0.00 3.58
474 475 9.581099 AAGGTGAATTGCTTAATTAATTAACGG 57.419 29.630 15.19 9.06 31.27 4.44
512 513 5.105917 ACAGTGTTTCTTTTCCATGTTTCGT 60.106 36.000 0.00 0.00 0.00 3.85
540 541 1.026718 GCATTTCCCAGAGGTGACCG 61.027 60.000 0.00 0.00 0.00 4.79
625 626 6.147164 GGAAGAAGACGTAAATGTCAACATGA 59.853 38.462 0.00 0.00 41.41 3.07
636 637 2.295349 AGCTCGTGGAAGAAGACGTAAA 59.705 45.455 0.00 0.00 36.91 2.01
639 640 0.039074 CAGCTCGTGGAAGAAGACGT 60.039 55.000 0.00 0.00 36.91 4.34
654 1367 2.995872 GCGTCTCCGAACTCCAGCT 61.996 63.158 0.00 0.00 35.63 4.24
656 1369 1.949847 ATGGCGTCTCCGAACTCCAG 61.950 60.000 0.00 0.00 37.80 3.86
767 1485 0.391661 TCCTGGCTTCAGTTCGATGC 60.392 55.000 0.00 0.00 42.63 3.91
782 1500 1.361668 CGATCGGTGTGCCTTTCCTG 61.362 60.000 7.38 0.00 0.00 3.86
785 1503 0.389948 AGACGATCGGTGTGCCTTTC 60.390 55.000 20.98 4.23 0.00 2.62
839 1563 0.462759 GGGAGTCCTGCGATTTGGAG 60.463 60.000 9.58 0.00 35.45 3.86
901 1637 1.801913 CTGAGCAGGTGTACGTCGC 60.802 63.158 0.00 0.00 0.00 5.19
902 1638 0.800631 TACTGAGCAGGTGTACGTCG 59.199 55.000 0.00 0.00 0.00 5.12
903 1639 2.422479 TGATACTGAGCAGGTGTACGTC 59.578 50.000 0.00 0.00 0.00 4.34
926 1665 0.107993 AGCCGTGGAGATGTGTGATG 60.108 55.000 0.00 0.00 0.00 3.07
942 1681 4.029809 AGGCCGGTGTGGTTAGCC 62.030 66.667 1.90 0.00 44.20 3.93
973 1712 4.153475 GGATTTCTTGTTACGTGCAGCTAA 59.847 41.667 0.00 0.00 0.00 3.09
989 1728 0.465097 CGAGGCCATGCTGGATTTCT 60.465 55.000 5.01 0.00 40.96 2.52
993 1732 2.815945 CCTCGAGGCCATGCTGGAT 61.816 63.158 20.67 0.00 40.96 3.41
1314 2053 0.163146 GCACGGTACAACGAAGAAGC 59.837 55.000 0.00 0.00 37.61 3.86
1328 2067 1.074319 AACGCTACATACGTGCACGG 61.074 55.000 39.21 25.48 44.30 4.94
1341 2082 1.300620 AAGCACACGAGCAACGCTA 60.301 52.632 0.00 0.00 46.94 4.26
1349 2090 3.974401 CCACAAATAAACAAGCACACGAG 59.026 43.478 0.00 0.00 0.00 4.18
1365 2106 4.509970 CACACTCTCGTTTGATACCACAAA 59.490 41.667 0.00 0.00 37.41 2.83
1420 2165 1.064946 GGATCACGAGTCGCAGGAG 59.935 63.158 13.59 0.00 0.00 3.69
1451 2210 1.672363 CCGTCTAGGCACATACGTACA 59.328 52.381 0.00 0.00 33.63 2.90
1545 2493 9.071276 AGAAATTCTGTCAACACATTTATCTGT 57.929 29.630 0.00 0.00 0.00 3.41
1546 2494 9.903682 AAGAAATTCTGTCAACACATTTATCTG 57.096 29.630 0.00 0.00 0.00 2.90
1547 2495 9.903682 CAAGAAATTCTGTCAACACATTTATCT 57.096 29.630 0.00 0.00 0.00 1.98
1548 2496 9.683069 ACAAGAAATTCTGTCAACACATTTATC 57.317 29.630 0.00 0.00 0.00 1.75
1572 2523 7.175347 GAGCATTACTCATCCTGGATATACA 57.825 40.000 9.27 0.00 45.49 2.29
1587 2538 3.191162 TCGCTTTGCATTTGAGCATTACT 59.809 39.130 10.97 0.00 45.19 2.24
1588 2539 3.301642 GTCGCTTTGCATTTGAGCATTAC 59.698 43.478 10.97 4.17 45.19 1.89
1590 2541 2.029649 AGTCGCTTTGCATTTGAGCATT 60.030 40.909 10.97 0.00 45.19 3.56
1594 2546 2.975410 TCAGTCGCTTTGCATTTGAG 57.025 45.000 0.00 0.00 0.00 3.02
1669 4758 3.971245 ATCCCCGCAAAGCAATAAAAA 57.029 38.095 0.00 0.00 0.00 1.94
1670 4759 3.971245 AATCCCCGCAAAGCAATAAAA 57.029 38.095 0.00 0.00 0.00 1.52
1671 4760 3.674682 CGAAATCCCCGCAAAGCAATAAA 60.675 43.478 0.00 0.00 0.00 1.40
1672 4761 2.159310 CGAAATCCCCGCAAAGCAATAA 60.159 45.455 0.00 0.00 0.00 1.40
1673 4762 1.403679 CGAAATCCCCGCAAAGCAATA 59.596 47.619 0.00 0.00 0.00 1.90
1674 4763 0.173255 CGAAATCCCCGCAAAGCAAT 59.827 50.000 0.00 0.00 0.00 3.56
1675 4764 0.891449 TCGAAATCCCCGCAAAGCAA 60.891 50.000 0.00 0.00 0.00 3.91
1676 4765 1.302913 TCGAAATCCCCGCAAAGCA 60.303 52.632 0.00 0.00 0.00 3.91
1677 4766 1.136774 GTCGAAATCCCCGCAAAGC 59.863 57.895 0.00 0.00 0.00 3.51
1678 4767 1.094785 ATGTCGAAATCCCCGCAAAG 58.905 50.000 0.00 0.00 0.00 2.77
1679 4768 1.540267 AATGTCGAAATCCCCGCAAA 58.460 45.000 0.00 0.00 0.00 3.68
1680 4769 1.540267 AAATGTCGAAATCCCCGCAA 58.460 45.000 0.00 0.00 0.00 4.85
1681 4770 1.540267 AAAATGTCGAAATCCCCGCA 58.460 45.000 0.00 0.00 0.00 5.69
1682 4771 3.982576 ATAAAATGTCGAAATCCCCGC 57.017 42.857 0.00 0.00 0.00 6.13
1683 4772 5.493133 TCAATAAAATGTCGAAATCCCCG 57.507 39.130 0.00 0.00 0.00 5.73
1684 4773 9.463443 CTTAATCAATAAAATGTCGAAATCCCC 57.537 33.333 0.00 0.00 0.00 4.81
1685 4774 8.968242 GCTTAATCAATAAAATGTCGAAATCCC 58.032 33.333 0.00 0.00 0.00 3.85
1686 4775 9.515020 TGCTTAATCAATAAAATGTCGAAATCC 57.485 29.630 0.00 0.00 0.00 3.01
1689 4778 9.684448 TGTTGCTTAATCAATAAAATGTCGAAA 57.316 25.926 0.00 0.00 0.00 3.46
1690 4779 9.853555 ATGTTGCTTAATCAATAAAATGTCGAA 57.146 25.926 0.00 0.00 0.00 3.71
1691 4780 9.853555 AATGTTGCTTAATCAATAAAATGTCGA 57.146 25.926 0.00 0.00 0.00 4.20
1700 4789 9.801873 GGCTTTTCTAATGTTGCTTAATCAATA 57.198 29.630 0.00 0.00 0.00 1.90
1701 4790 8.534496 AGGCTTTTCTAATGTTGCTTAATCAAT 58.466 29.630 0.00 0.00 0.00 2.57
1702 4791 7.895759 AGGCTTTTCTAATGTTGCTTAATCAA 58.104 30.769 0.00 0.00 0.00 2.57
1703 4792 7.466746 AGGCTTTTCTAATGTTGCTTAATCA 57.533 32.000 0.00 0.00 0.00 2.57
1834 5056 3.737850 CAGAGGCTGAAGAAAACTGTCT 58.262 45.455 0.00 0.00 32.44 3.41
1930 5185 4.154015 CGAATGTTCACCTGCTTAACATCA 59.846 41.667 0.00 0.00 41.67 3.07
1935 5190 2.742053 GCTCGAATGTTCACCTGCTTAA 59.258 45.455 0.00 0.00 0.00 1.85
1940 5195 1.667724 GATGGCTCGAATGTTCACCTG 59.332 52.381 0.00 0.00 0.00 4.00
1961 5216 6.642540 TGTGATTGAGTCATGTATAATCTCGC 59.357 38.462 0.00 0.00 39.48 5.03
1962 5217 8.754230 ATGTGATTGAGTCATGTATAATCTCG 57.246 34.615 0.00 0.00 39.48 4.04
2016 5271 9.229276 TGGGATATAGCCATATATGATCTGTTT 57.771 33.333 14.54 4.76 35.19 2.83
2020 5275 7.344093 CCGATGGGATATAGCCATATATGATCT 59.656 40.741 14.54 12.28 35.19 2.75
2029 5284 2.356125 GCAACCGATGGGATATAGCCAT 60.356 50.000 9.69 0.49 36.97 4.40
2084 5339 1.069978 GCTACATCCTCCCTGCTTCTC 59.930 57.143 0.00 0.00 0.00 2.87
2110 5365 3.031013 TGAGAGCTATCGGATGGTTTCA 58.969 45.455 3.51 5.07 0.00 2.69
2114 5369 4.101585 TCATTTTGAGAGCTATCGGATGGT 59.898 41.667 14.44 0.00 0.00 3.55
2122 5377 5.564550 AGTGTGGTTCATTTTGAGAGCTAT 58.435 37.500 0.00 0.00 0.00 2.97
2161 6005 6.966632 TCGTAATGATTTTGTCTTTAGCATGC 59.033 34.615 10.51 10.51 29.93 4.06
2226 6101 1.685148 CTAAGCTCAAGGGGCAATCC 58.315 55.000 0.00 0.00 0.00 3.01
2227 6102 1.212935 TCCTAAGCTCAAGGGGCAATC 59.787 52.381 13.64 0.00 34.66 2.67
2238 6113 1.134371 GGTGGTGTCCATCCTAAGCTC 60.134 57.143 0.00 0.00 35.28 4.09
2255 6130 3.380479 TGTTCGAGAACTAGTTGGGTG 57.620 47.619 14.14 0.13 41.67 4.61
2289 6164 1.061546 TCAACCTACCACCTCCAACC 58.938 55.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.