Multiple sequence alignment - TraesCS2D01G185900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G185900 chr2D 100.000 6173 0 0 1 6173 130981801 130987973 0.000000e+00 11400.0
1 TraesCS2D01G185900 chr2D 88.525 854 80 14 1010 1857 645265428 645264587 0.000000e+00 1018.0
2 TraesCS2D01G185900 chr2D 87.942 481 46 7 5701 6173 131041860 131042336 1.940000e-154 556.0
3 TraesCS2D01G185900 chr2D 85.383 431 39 15 582 999 130892756 130893175 5.720000e-115 425.0
4 TraesCS2D01G185900 chr2D 92.593 216 15 1 1853 2067 645256289 645256074 6.010000e-80 309.0
5 TraesCS2D01G185900 chr2D 81.818 352 53 4 5824 6167 131124270 131124618 1.010000e-72 285.0
6 TraesCS2D01G185900 chr2D 82.637 311 41 5 5870 6167 131134187 131134497 4.750000e-66 263.0
7 TraesCS2D01G185900 chr2D 83.172 309 29 15 5115 5401 131041425 131041732 1.710000e-65 261.0
8 TraesCS2D01G185900 chr2D 83.412 211 32 3 4802 5012 131123895 131124102 6.310000e-45 193.0
9 TraesCS2D01G185900 chr2D 80.508 236 32 6 177 410 632042567 632042344 1.060000e-37 169.0
10 TraesCS2D01G185900 chr2A 93.582 3693 148 36 2516 6173 137125751 137129389 0.000000e+00 5424.0
11 TraesCS2D01G185900 chr2A 91.135 1286 74 15 769 2031 137124089 137125357 0.000000e+00 1707.0
12 TraesCS2D01G185900 chr2A 91.272 401 30 2 2053 2448 137125351 137125751 5.440000e-150 542.0
13 TraesCS2D01G185900 chr2B 93.232 3679 128 37 2516 6151 184491229 184494829 0.000000e+00 5302.0
14 TraesCS2D01G185900 chr2B 90.967 1893 109 29 582 2448 184489373 184491229 0.000000e+00 2492.0
15 TraesCS2D01G185900 chr2B 92.308 78 2 1 2444 2517 614917218 614917141 2.350000e-19 108.0
16 TraesCS2D01G185900 chr2B 89.157 83 8 1 6089 6171 184578917 184578998 1.090000e-17 102.0
17 TraesCS2D01G185900 chr3B 91.149 531 20 7 1 506 705287487 705288015 0.000000e+00 695.0
18 TraesCS2D01G185900 chr3B 88.000 125 15 0 375 499 774724388 774724512 1.390000e-31 148.0
19 TraesCS2D01G185900 chr3B 91.071 56 3 2 442 496 763186245 763186299 2.390000e-09 75.0
20 TraesCS2D01G185900 chr3B 91.071 56 3 2 442 496 763788454 763788400 2.390000e-09 75.0
21 TraesCS2D01G185900 chr7B 82.667 225 26 5 187 410 750420815 750420603 2.940000e-43 187.0
22 TraesCS2D01G185900 chr7B 97.727 44 1 0 455 498 658168883 658168926 6.640000e-10 76.8
23 TraesCS2D01G185900 chr7B 84.146 82 6 6 429 507 623669271 623669194 8.580000e-09 73.1
24 TraesCS2D01G185900 chr3A 81.328 241 32 5 187 426 14235715 14235487 3.800000e-42 183.0
25 TraesCS2D01G185900 chr3A 93.421 76 3 2 2445 2518 274756532 274756457 1.820000e-20 111.0
26 TraesCS2D01G185900 chr5D 82.222 225 27 5 187 410 13887381 13887593 1.370000e-41 182.0
27 TraesCS2D01G185900 chr5D 93.333 75 3 2 2445 2517 402773449 402773375 6.540000e-20 110.0
28 TraesCS2D01G185900 chr5D 92.405 79 3 2 2445 2520 546839010 546838932 6.540000e-20 110.0
29 TraesCS2D01G185900 chr5D 86.301 73 5 5 429 498 445082215 445082145 2.390000e-09 75.0
30 TraesCS2D01G185900 chr7A 80.913 241 32 6 187 426 125573015 125572788 1.770000e-40 178.0
31 TraesCS2D01G185900 chr7A 91.463 82 3 2 2442 2519 32013133 32013214 6.540000e-20 110.0
32 TraesCS2D01G185900 chr5B 80.913 241 32 6 187 426 361883398 361883171 1.770000e-40 178.0
33 TraesCS2D01G185900 chr5A 80.913 241 32 6 187 426 558679347 558679120 1.770000e-40 178.0
34 TraesCS2D01G185900 chr7D 80.889 225 30 5 187 410 320199633 320199421 1.380000e-36 165.0
35 TraesCS2D01G185900 chr7D 94.667 75 4 0 2443 2517 388696640 388696566 3.910000e-22 117.0
36 TraesCS2D01G185900 chr4D 93.421 76 3 1 2445 2518 43548945 43548870 1.820000e-20 111.0
37 TraesCS2D01G185900 chr4D 92.308 78 4 1 2442 2517 43548868 43548945 6.540000e-20 110.0
38 TraesCS2D01G185900 chr4A 93.151 73 5 0 2445 2517 90090617 90090689 2.350000e-19 108.0
39 TraesCS2D01G185900 chr4A 90.566 53 5 0 455 507 737739485 737739433 3.090000e-08 71.3
40 TraesCS2D01G185900 chr1A 94.118 51 3 0 455 505 33378115 33378065 1.840000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G185900 chr2D 130981801 130987973 6172 False 11400.000000 11400 100.000000 1 6173 1 chr2D.!!$F2 6172
1 TraesCS2D01G185900 chr2D 645264587 645265428 841 True 1018.000000 1018 88.525000 1010 1857 1 chr2D.!!$R3 847
2 TraesCS2D01G185900 chr2D 131041425 131042336 911 False 408.500000 556 85.557000 5115 6173 2 chr2D.!!$F4 1058
3 TraesCS2D01G185900 chr2D 131123895 131124618 723 False 239.000000 285 82.615000 4802 6167 2 chr2D.!!$F5 1365
4 TraesCS2D01G185900 chr2A 137124089 137129389 5300 False 2557.666667 5424 91.996333 769 6173 3 chr2A.!!$F1 5404
5 TraesCS2D01G185900 chr2B 184489373 184494829 5456 False 3897.000000 5302 92.099500 582 6151 2 chr2B.!!$F2 5569
6 TraesCS2D01G185900 chr3B 705287487 705288015 528 False 695.000000 695 91.149000 1 506 1 chr3B.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 341 0.318120 CCAAACAGGAGGCGCAAAAT 59.682 50.000 10.83 0.0 41.22 1.82 F
1567 1610 0.035056 AAGGTATGGCTGTGGTCTGC 60.035 55.000 0.00 0.0 37.71 4.26 F
1992 2041 0.165295 CTGACATGCTGTTGTGCTCG 59.835 55.000 0.00 0.0 0.00 5.03 F
2457 2513 0.468648 CCCAAATACTCCCTCCGTCC 59.531 60.000 0.00 0.0 0.00 4.79 F
2458 2514 0.468648 CCAAATACTCCCTCCGTCCC 59.531 60.000 0.00 0.0 0.00 4.46 F
2536 2592 0.535335 TATCGTTCTGTGGCTGGACC 59.465 55.000 0.00 0.0 39.84 4.46 F
4216 4357 2.155279 GCTCAAACAGGGAGAGAAACC 58.845 52.381 0.00 0.0 34.24 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1688 0.457851 TCCAAAAACACAAGGCCACG 59.542 50.000 5.01 0.0 0.00 4.94 R
2521 2577 0.954452 CAAAGGTCCAGCCACAGAAC 59.046 55.000 0.00 0.0 40.61 3.01 R
3602 3739 1.399714 TTCACAGAGACGGTGTCACT 58.600 50.000 8.09 0.0 37.52 3.41 R
4070 4211 1.771854 TGCTGAACCCTGGAGTACAAA 59.228 47.619 0.00 0.0 0.00 2.83 R
4296 4437 3.360249 AGCACAAAAACAGCAGATGAC 57.640 42.857 0.00 0.0 0.00 3.06 R
4378 4519 4.031028 CAGTTTGCAAGAGACAAAACTCG 58.969 43.478 0.00 0.0 38.64 4.18 R
5874 6077 0.301388 CGCTTTGCAACAAGTTTGGC 59.699 50.000 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 91 7.682593 TTTTCATTCAAGCGTATGCATATTG 57.317 32.000 10.16 10.60 46.23 1.90
109 124 7.488792 TGAATAACATGTTTGCTGATGTAATGC 59.511 33.333 17.78 0.00 32.40 3.56
110 125 4.787260 ACATGTTTGCTGATGTAATGCA 57.213 36.364 0.00 0.00 30.86 3.96
111 126 5.136816 ACATGTTTGCTGATGTAATGCAA 57.863 34.783 0.00 0.00 43.69 4.08
112 127 5.165676 ACATGTTTGCTGATGTAATGCAAG 58.834 37.500 0.00 0.00 45.52 4.01
113 128 3.577667 TGTTTGCTGATGTAATGCAAGC 58.422 40.909 0.00 0.00 45.52 4.01
114 129 2.925563 GTTTGCTGATGTAATGCAAGCC 59.074 45.455 0.00 0.00 45.52 4.35
115 130 1.836802 TGCTGATGTAATGCAAGCCA 58.163 45.000 0.00 0.00 31.64 4.75
116 131 2.169330 TGCTGATGTAATGCAAGCCAA 58.831 42.857 0.00 0.00 31.64 4.52
117 132 2.761767 TGCTGATGTAATGCAAGCCAAT 59.238 40.909 0.00 0.00 31.64 3.16
118 133 3.952967 TGCTGATGTAATGCAAGCCAATA 59.047 39.130 0.00 0.00 31.64 1.90
119 134 4.401837 TGCTGATGTAATGCAAGCCAATAA 59.598 37.500 0.00 0.00 31.64 1.40
120 135 5.069383 TGCTGATGTAATGCAAGCCAATAAT 59.931 36.000 0.00 0.00 31.64 1.28
121 136 5.987347 GCTGATGTAATGCAAGCCAATAATT 59.013 36.000 0.00 0.00 0.00 1.40
122 137 6.480981 GCTGATGTAATGCAAGCCAATAATTT 59.519 34.615 0.00 0.00 0.00 1.82
123 138 7.011669 GCTGATGTAATGCAAGCCAATAATTTT 59.988 33.333 0.00 0.00 0.00 1.82
124 139 8.422973 TGATGTAATGCAAGCCAATAATTTTC 57.577 30.769 0.00 0.00 0.00 2.29
125 140 8.039538 TGATGTAATGCAAGCCAATAATTTTCA 58.960 29.630 0.00 0.00 0.00 2.69
126 141 8.967664 ATGTAATGCAAGCCAATAATTTTCAT 57.032 26.923 0.00 0.00 0.00 2.57
127 142 8.199176 TGTAATGCAAGCCAATAATTTTCATG 57.801 30.769 0.00 0.00 0.00 3.07
128 143 6.687081 AATGCAAGCCAATAATTTTCATGG 57.313 33.333 0.00 0.00 36.00 3.66
129 144 5.163281 TGCAAGCCAATAATTTTCATGGT 57.837 34.783 0.00 0.00 35.34 3.55
130 145 5.177326 TGCAAGCCAATAATTTTCATGGTC 58.823 37.500 0.00 0.00 35.34 4.02
131 146 4.268405 GCAAGCCAATAATTTTCATGGTCG 59.732 41.667 0.00 0.00 35.34 4.79
132 147 5.410067 CAAGCCAATAATTTTCATGGTCGT 58.590 37.500 0.00 0.00 35.34 4.34
133 148 4.997565 AGCCAATAATTTTCATGGTCGTG 58.002 39.130 0.00 0.00 35.34 4.35
134 149 3.551485 GCCAATAATTTTCATGGTCGTGC 59.449 43.478 0.00 0.00 35.34 5.34
135 150 4.677779 GCCAATAATTTTCATGGTCGTGCT 60.678 41.667 0.00 0.00 35.34 4.40
136 151 5.449862 GCCAATAATTTTCATGGTCGTGCTA 60.450 40.000 0.00 0.00 35.34 3.49
137 152 5.971202 CCAATAATTTTCATGGTCGTGCTAC 59.029 40.000 0.00 0.00 0.00 3.58
138 153 5.751243 ATAATTTTCATGGTCGTGCTACC 57.249 39.130 0.00 0.00 40.19 3.18
139 154 2.851263 TTTTCATGGTCGTGCTACCT 57.149 45.000 0.00 0.00 40.44 3.08
140 155 2.851263 TTTCATGGTCGTGCTACCTT 57.149 45.000 0.00 0.00 40.44 3.50
141 156 2.851263 TTCATGGTCGTGCTACCTTT 57.149 45.000 0.00 0.00 40.44 3.11
142 157 2.093306 TCATGGTCGTGCTACCTTTG 57.907 50.000 0.00 3.88 40.44 2.77
143 158 1.086696 CATGGTCGTGCTACCTTTGG 58.913 55.000 5.30 0.00 40.44 3.28
144 159 0.690762 ATGGTCGTGCTACCTTTGGT 59.309 50.000 5.30 0.00 40.44 3.67
145 160 1.340088 TGGTCGTGCTACCTTTGGTA 58.660 50.000 5.30 0.00 40.44 3.25
146 161 1.903860 TGGTCGTGCTACCTTTGGTAT 59.096 47.619 0.00 0.00 37.56 2.73
147 162 2.303600 TGGTCGTGCTACCTTTGGTATT 59.696 45.455 0.00 0.00 37.56 1.89
148 163 3.244630 TGGTCGTGCTACCTTTGGTATTT 60.245 43.478 0.00 0.00 37.56 1.40
149 164 3.373130 GGTCGTGCTACCTTTGGTATTTC 59.627 47.826 0.00 0.00 37.56 2.17
150 165 3.373130 GTCGTGCTACCTTTGGTATTTCC 59.627 47.826 0.00 0.00 37.56 3.13
151 166 3.262405 TCGTGCTACCTTTGGTATTTCCT 59.738 43.478 0.00 0.00 37.56 3.36
152 167 4.467082 TCGTGCTACCTTTGGTATTTCCTA 59.533 41.667 0.00 0.00 37.56 2.94
153 168 4.569564 CGTGCTACCTTTGGTATTTCCTAC 59.430 45.833 0.00 0.00 37.56 3.18
154 169 5.626116 CGTGCTACCTTTGGTATTTCCTACT 60.626 44.000 0.00 0.00 37.56 2.57
155 170 6.406177 CGTGCTACCTTTGGTATTTCCTACTA 60.406 42.308 0.00 0.00 37.56 1.82
156 171 7.506971 GTGCTACCTTTGGTATTTCCTACTAT 58.493 38.462 0.00 0.00 37.56 2.12
157 172 8.645110 GTGCTACCTTTGGTATTTCCTACTATA 58.355 37.037 0.00 0.00 37.56 1.31
158 173 9.388672 TGCTACCTTTGGTATTTCCTACTATAT 57.611 33.333 0.00 0.00 37.56 0.86
178 193 9.712305 ACTATATATTGGTATTGTTGAGTGAGC 57.288 33.333 0.00 0.00 0.00 4.26
179 194 9.935241 CTATATATTGGTATTGTTGAGTGAGCT 57.065 33.333 0.00 0.00 0.00 4.09
181 196 5.633830 ATTGGTATTGTTGAGTGAGCTTG 57.366 39.130 0.00 0.00 0.00 4.01
182 197 3.411446 TGGTATTGTTGAGTGAGCTTGG 58.589 45.455 0.00 0.00 0.00 3.61
183 198 2.162408 GGTATTGTTGAGTGAGCTTGGC 59.838 50.000 0.00 0.00 0.00 4.52
184 199 2.283145 ATTGTTGAGTGAGCTTGGCT 57.717 45.000 0.00 0.00 43.88 4.75
185 200 2.928801 TTGTTGAGTGAGCTTGGCTA 57.071 45.000 0.00 0.00 39.88 3.93
186 201 3.423539 TTGTTGAGTGAGCTTGGCTAT 57.576 42.857 0.00 0.00 39.88 2.97
187 202 4.551702 TTGTTGAGTGAGCTTGGCTATA 57.448 40.909 0.00 0.00 39.88 1.31
188 203 4.551702 TGTTGAGTGAGCTTGGCTATAA 57.448 40.909 0.00 0.00 39.88 0.98
189 204 4.507710 TGTTGAGTGAGCTTGGCTATAAG 58.492 43.478 0.00 0.00 39.88 1.73
190 205 4.020218 TGTTGAGTGAGCTTGGCTATAAGT 60.020 41.667 0.00 0.00 39.88 2.24
191 206 4.826274 TGAGTGAGCTTGGCTATAAGTT 57.174 40.909 0.00 0.00 39.88 2.66
192 207 4.507710 TGAGTGAGCTTGGCTATAAGTTG 58.492 43.478 0.00 0.00 39.88 3.16
193 208 4.020218 TGAGTGAGCTTGGCTATAAGTTGT 60.020 41.667 0.00 0.00 39.88 3.32
194 209 4.508662 AGTGAGCTTGGCTATAAGTTGTC 58.491 43.478 0.00 0.00 39.88 3.18
195 210 4.020218 AGTGAGCTTGGCTATAAGTTGTCA 60.020 41.667 0.00 0.00 39.88 3.58
196 211 4.331168 GTGAGCTTGGCTATAAGTTGTCAG 59.669 45.833 0.00 0.00 39.88 3.51
197 212 4.222810 TGAGCTTGGCTATAAGTTGTCAGA 59.777 41.667 0.00 0.00 39.88 3.27
198 213 5.104776 TGAGCTTGGCTATAAGTTGTCAGAT 60.105 40.000 0.00 0.00 39.88 2.90
199 214 5.121811 AGCTTGGCTATAAGTTGTCAGATG 58.878 41.667 0.00 0.00 36.99 2.90
200 215 4.274459 GCTTGGCTATAAGTTGTCAGATGG 59.726 45.833 0.00 0.00 0.00 3.51
201 216 3.808728 TGGCTATAAGTTGTCAGATGGC 58.191 45.455 0.00 0.00 0.00 4.40
202 217 3.455910 TGGCTATAAGTTGTCAGATGGCT 59.544 43.478 0.00 0.00 0.00 4.75
203 218 4.061596 GGCTATAAGTTGTCAGATGGCTC 58.938 47.826 0.00 0.00 0.00 4.70
204 219 4.202305 GGCTATAAGTTGTCAGATGGCTCT 60.202 45.833 0.00 0.00 0.00 4.09
205 220 5.363939 GCTATAAGTTGTCAGATGGCTCTT 58.636 41.667 0.00 0.00 0.00 2.85
206 221 5.236047 GCTATAAGTTGTCAGATGGCTCTTG 59.764 44.000 5.98 0.00 0.00 3.02
207 222 3.777106 AAGTTGTCAGATGGCTCTTGA 57.223 42.857 0.00 0.00 0.00 3.02
208 223 3.996921 AGTTGTCAGATGGCTCTTGAT 57.003 42.857 0.00 0.00 0.00 2.57
209 224 4.298103 AGTTGTCAGATGGCTCTTGATT 57.702 40.909 0.00 0.00 0.00 2.57
210 225 4.260170 AGTTGTCAGATGGCTCTTGATTC 58.740 43.478 0.00 0.00 0.00 2.52
211 226 3.986996 TGTCAGATGGCTCTTGATTCA 57.013 42.857 0.00 0.00 0.00 2.57
212 227 4.498894 TGTCAGATGGCTCTTGATTCAT 57.501 40.909 0.00 0.00 0.00 2.57
213 228 4.851843 TGTCAGATGGCTCTTGATTCATT 58.148 39.130 0.00 0.00 0.00 2.57
214 229 5.258841 TGTCAGATGGCTCTTGATTCATTT 58.741 37.500 0.00 0.00 0.00 2.32
215 230 5.356190 TGTCAGATGGCTCTTGATTCATTTC 59.644 40.000 0.00 0.00 0.00 2.17
216 231 5.356190 GTCAGATGGCTCTTGATTCATTTCA 59.644 40.000 0.00 0.00 0.00 2.69
217 232 5.589050 TCAGATGGCTCTTGATTCATTTCAG 59.411 40.000 0.00 0.00 0.00 3.02
218 233 5.589050 CAGATGGCTCTTGATTCATTTCAGA 59.411 40.000 0.00 0.00 0.00 3.27
219 234 6.263392 CAGATGGCTCTTGATTCATTTCAGAT 59.737 38.462 0.00 0.00 0.00 2.90
220 235 6.834451 AGATGGCTCTTGATTCATTTCAGATT 59.166 34.615 0.00 0.00 0.00 2.40
221 236 6.845758 TGGCTCTTGATTCATTTCAGATTT 57.154 33.333 0.00 0.00 0.00 2.17
222 237 6.860080 TGGCTCTTGATTCATTTCAGATTTC 58.140 36.000 0.00 0.00 0.00 2.17
223 238 6.434965 TGGCTCTTGATTCATTTCAGATTTCA 59.565 34.615 0.00 0.00 0.00 2.69
224 239 6.750963 GGCTCTTGATTCATTTCAGATTTCAC 59.249 38.462 0.00 0.00 0.00 3.18
225 240 7.310664 GCTCTTGATTCATTTCAGATTTCACA 58.689 34.615 0.00 0.00 0.00 3.58
226 241 7.272948 GCTCTTGATTCATTTCAGATTTCACAC 59.727 37.037 0.00 0.00 0.00 3.82
227 242 8.168790 TCTTGATTCATTTCAGATTTCACACA 57.831 30.769 0.00 0.00 0.00 3.72
228 243 8.077991 TCTTGATTCATTTCAGATTTCACACAC 58.922 33.333 0.00 0.00 0.00 3.82
229 244 6.372981 TGATTCATTTCAGATTTCACACACG 58.627 36.000 0.00 0.00 0.00 4.49
230 245 4.145876 TCATTTCAGATTTCACACACGC 57.854 40.909 0.00 0.00 0.00 5.34
231 246 3.814842 TCATTTCAGATTTCACACACGCT 59.185 39.130 0.00 0.00 0.00 5.07
232 247 3.878086 TTTCAGATTTCACACACGCTC 57.122 42.857 0.00 0.00 0.00 5.03
233 248 2.820059 TCAGATTTCACACACGCTCT 57.180 45.000 0.00 0.00 0.00 4.09
234 249 2.407090 TCAGATTTCACACACGCTCTG 58.593 47.619 0.00 0.00 33.16 3.35
235 250 1.136141 CAGATTTCACACACGCTCTGC 60.136 52.381 0.00 0.00 0.00 4.26
236 251 1.151668 GATTTCACACACGCTCTGCT 58.848 50.000 0.00 0.00 0.00 4.24
237 252 2.029020 AGATTTCACACACGCTCTGCTA 60.029 45.455 0.00 0.00 0.00 3.49
238 253 2.232756 TTTCACACACGCTCTGCTAA 57.767 45.000 0.00 0.00 0.00 3.09
239 254 2.455674 TTCACACACGCTCTGCTAAT 57.544 45.000 0.00 0.00 0.00 1.73
240 255 1.996292 TCACACACGCTCTGCTAATC 58.004 50.000 0.00 0.00 0.00 1.75
241 256 1.272212 TCACACACGCTCTGCTAATCA 59.728 47.619 0.00 0.00 0.00 2.57
242 257 2.094026 TCACACACGCTCTGCTAATCAT 60.094 45.455 0.00 0.00 0.00 2.45
243 258 2.674852 CACACACGCTCTGCTAATCATT 59.325 45.455 0.00 0.00 0.00 2.57
244 259 3.865164 CACACACGCTCTGCTAATCATTA 59.135 43.478 0.00 0.00 0.00 1.90
245 260 4.026228 CACACACGCTCTGCTAATCATTAG 60.026 45.833 0.00 0.00 36.32 1.73
267 282 8.532977 TTAGCAATCCAAGCTAATTGTTTTTC 57.467 30.769 14.38 2.51 46.40 2.29
268 283 5.934043 AGCAATCCAAGCTAATTGTTTTTCC 59.066 36.000 14.38 2.00 41.32 3.13
269 284 5.700373 GCAATCCAAGCTAATTGTTTTTCCA 59.300 36.000 14.38 0.00 37.17 3.53
270 285 6.372381 GCAATCCAAGCTAATTGTTTTTCCAT 59.628 34.615 14.38 0.00 37.17 3.41
271 286 7.548780 GCAATCCAAGCTAATTGTTTTTCCATA 59.451 33.333 14.38 0.00 37.17 2.74
272 287 9.603921 CAATCCAAGCTAATTGTTTTTCCATAT 57.396 29.630 7.79 0.00 37.17 1.78
275 290 9.474313 TCCAAGCTAATTGTTTTTCCATATACT 57.526 29.630 0.00 0.00 37.17 2.12
276 291 9.520204 CCAAGCTAATTGTTTTTCCATATACTG 57.480 33.333 0.00 0.00 37.17 2.74
308 323 6.312399 TGAATGTGTTGTGTAGATGAAACC 57.688 37.500 0.00 0.00 0.00 3.27
309 324 5.825151 TGAATGTGTTGTGTAGATGAAACCA 59.175 36.000 0.00 0.00 0.00 3.67
310 325 6.319911 TGAATGTGTTGTGTAGATGAAACCAA 59.680 34.615 0.00 0.00 0.00 3.67
311 326 6.707440 ATGTGTTGTGTAGATGAAACCAAA 57.293 33.333 0.00 0.00 0.00 3.28
312 327 5.885881 TGTGTTGTGTAGATGAAACCAAAC 58.114 37.500 0.00 0.00 0.00 2.93
313 328 5.416013 TGTGTTGTGTAGATGAAACCAAACA 59.584 36.000 0.00 0.00 0.00 2.83
314 329 5.971202 GTGTTGTGTAGATGAAACCAAACAG 59.029 40.000 0.00 0.00 0.00 3.16
315 330 5.067153 TGTTGTGTAGATGAAACCAAACAGG 59.933 40.000 0.00 0.00 45.67 4.00
316 331 5.042463 TGTGTAGATGAAACCAAACAGGA 57.958 39.130 0.00 0.00 41.22 3.86
317 332 5.063204 TGTGTAGATGAAACCAAACAGGAG 58.937 41.667 0.00 0.00 41.22 3.69
318 333 4.455877 GTGTAGATGAAACCAAACAGGAGG 59.544 45.833 0.00 0.00 41.22 4.30
319 334 2.519013 AGATGAAACCAAACAGGAGGC 58.481 47.619 0.00 0.00 41.22 4.70
320 335 1.200020 GATGAAACCAAACAGGAGGCG 59.800 52.381 0.00 0.00 41.22 5.52
321 336 1.285950 GAAACCAAACAGGAGGCGC 59.714 57.895 0.00 0.00 41.22 6.53
322 337 1.452145 GAAACCAAACAGGAGGCGCA 61.452 55.000 10.83 0.00 41.22 6.09
323 338 1.040339 AAACCAAACAGGAGGCGCAA 61.040 50.000 10.83 0.00 41.22 4.85
324 339 1.040339 AACCAAACAGGAGGCGCAAA 61.040 50.000 10.83 0.00 41.22 3.68
325 340 1.040339 ACCAAACAGGAGGCGCAAAA 61.040 50.000 10.83 0.00 41.22 2.44
326 341 0.318120 CCAAACAGGAGGCGCAAAAT 59.682 50.000 10.83 0.00 41.22 1.82
327 342 1.270252 CCAAACAGGAGGCGCAAAATT 60.270 47.619 10.83 0.00 41.22 1.82
328 343 2.029470 CCAAACAGGAGGCGCAAAATTA 60.029 45.455 10.83 0.00 41.22 1.40
329 344 2.986479 CAAACAGGAGGCGCAAAATTAC 59.014 45.455 10.83 0.00 0.00 1.89
330 345 1.904287 ACAGGAGGCGCAAAATTACA 58.096 45.000 10.83 0.00 0.00 2.41
331 346 2.446435 ACAGGAGGCGCAAAATTACAT 58.554 42.857 10.83 0.00 0.00 2.29
332 347 2.825532 ACAGGAGGCGCAAAATTACATT 59.174 40.909 10.83 0.00 0.00 2.71
333 348 4.013728 ACAGGAGGCGCAAAATTACATTA 58.986 39.130 10.83 0.00 0.00 1.90
334 349 4.644685 ACAGGAGGCGCAAAATTACATTAT 59.355 37.500 10.83 0.00 0.00 1.28
335 350 5.825679 ACAGGAGGCGCAAAATTACATTATA 59.174 36.000 10.83 0.00 0.00 0.98
336 351 6.490040 ACAGGAGGCGCAAAATTACATTATAT 59.510 34.615 10.83 0.00 0.00 0.86
337 352 7.014230 ACAGGAGGCGCAAAATTACATTATATT 59.986 33.333 10.83 0.00 0.00 1.28
338 353 7.867403 CAGGAGGCGCAAAATTACATTATATTT 59.133 33.333 10.83 0.00 0.00 1.40
339 354 7.867403 AGGAGGCGCAAAATTACATTATATTTG 59.133 33.333 10.83 0.00 34.84 2.32
340 355 7.651704 GGAGGCGCAAAATTACATTATATTTGT 59.348 33.333 10.83 0.00 34.37 2.83
341 356 8.940768 AGGCGCAAAATTACATTATATTTGTT 57.059 26.923 10.83 0.00 34.37 2.83
429 444 8.519492 TGCTTCTTCATTTTGTAAAATAGCAC 57.481 30.769 15.26 2.53 38.78 4.40
430 445 8.140628 TGCTTCTTCATTTTGTAAAATAGCACA 58.859 29.630 15.26 4.26 38.78 4.57
431 446 8.427774 GCTTCTTCATTTTGTAAAATAGCACAC 58.572 33.333 13.08 0.00 36.08 3.82
432 447 9.462174 CTTCTTCATTTTGTAAAATAGCACACA 57.538 29.630 2.54 0.00 36.52 3.72
433 448 9.809096 TTCTTCATTTTGTAAAATAGCACACAA 57.191 25.926 2.54 0.00 36.52 3.33
434 449 9.809096 TCTTCATTTTGTAAAATAGCACACAAA 57.191 25.926 2.54 0.00 38.68 2.83
463 478 9.062524 TCTATATTTAAATGGACAAATGGACGG 57.937 33.333 11.05 0.00 0.00 4.79
464 479 4.792521 TTTAAATGGACAAATGGACGGG 57.207 40.909 0.00 0.00 0.00 5.28
465 480 0.894835 AAATGGACAAATGGACGGGC 59.105 50.000 0.00 0.00 0.00 6.13
466 481 1.312371 AATGGACAAATGGACGGGCG 61.312 55.000 0.00 0.00 0.00 6.13
467 482 3.810896 GGACAAATGGACGGGCGC 61.811 66.667 0.00 0.00 0.00 6.53
468 483 4.160635 GACAAATGGACGGGCGCG 62.161 66.667 22.69 22.69 0.00 6.86
490 505 4.633596 CGCGCGCCATCAACGATC 62.634 66.667 27.72 0.00 0.00 3.69
491 506 3.264897 GCGCGCCATCAACGATCT 61.265 61.111 23.24 0.00 0.00 2.75
492 507 1.949133 GCGCGCCATCAACGATCTA 60.949 57.895 23.24 0.00 0.00 1.98
493 508 1.880601 GCGCGCCATCAACGATCTAG 61.881 60.000 23.24 0.00 0.00 2.43
494 509 0.595053 CGCGCCATCAACGATCTAGT 60.595 55.000 0.00 0.00 0.00 2.57
495 510 1.334689 CGCGCCATCAACGATCTAGTA 60.335 52.381 0.00 0.00 0.00 1.82
496 511 2.668556 CGCGCCATCAACGATCTAGTAT 60.669 50.000 0.00 0.00 0.00 2.12
497 512 2.663602 GCGCCATCAACGATCTAGTATG 59.336 50.000 0.00 0.00 0.00 2.39
498 513 3.857383 GCGCCATCAACGATCTAGTATGT 60.857 47.826 0.00 0.00 0.00 2.29
499 514 4.615223 GCGCCATCAACGATCTAGTATGTA 60.615 45.833 0.00 0.00 0.00 2.29
500 515 5.641709 CGCCATCAACGATCTAGTATGTAT 58.358 41.667 0.00 0.00 0.00 2.29
501 516 5.513141 CGCCATCAACGATCTAGTATGTATG 59.487 44.000 0.00 0.00 0.00 2.39
502 517 6.390721 GCCATCAACGATCTAGTATGTATGT 58.609 40.000 0.00 0.00 0.00 2.29
503 518 7.535997 GCCATCAACGATCTAGTATGTATGTA 58.464 38.462 0.00 0.00 0.00 2.29
504 519 8.027189 GCCATCAACGATCTAGTATGTATGTAA 58.973 37.037 0.00 0.00 0.00 2.41
505 520 9.908152 CCATCAACGATCTAGTATGTATGTAAA 57.092 33.333 0.00 0.00 0.00 2.01
508 523 9.442033 TCAACGATCTAGTATGTATGTAAAACG 57.558 33.333 0.00 0.00 0.00 3.60
509 524 9.229784 CAACGATCTAGTATGTATGTAAAACGT 57.770 33.333 0.00 0.00 0.00 3.99
510 525 9.443283 AACGATCTAGTATGTATGTAAAACGTC 57.557 33.333 0.00 0.00 0.00 4.34
511 526 8.834465 ACGATCTAGTATGTATGTAAAACGTCT 58.166 33.333 0.00 0.00 0.00 4.18
512 527 9.104126 CGATCTAGTATGTATGTAAAACGTCTG 57.896 37.037 0.00 0.00 0.00 3.51
513 528 9.947669 GATCTAGTATGTATGTAAAACGTCTGT 57.052 33.333 0.00 0.00 0.00 3.41
514 529 9.947669 ATCTAGTATGTATGTAAAACGTCTGTC 57.052 33.333 0.00 0.00 0.00 3.51
515 530 9.170734 TCTAGTATGTATGTAAAACGTCTGTCT 57.829 33.333 0.00 0.00 0.00 3.41
516 531 9.222916 CTAGTATGTATGTAAAACGTCTGTCTG 57.777 37.037 0.00 0.00 0.00 3.51
517 532 7.600065 AGTATGTATGTAAAACGTCTGTCTGT 58.400 34.615 0.00 0.00 0.00 3.41
518 533 8.733458 AGTATGTATGTAAAACGTCTGTCTGTA 58.267 33.333 0.00 0.00 0.00 2.74
519 534 7.807687 ATGTATGTAAAACGTCTGTCTGTAC 57.192 36.000 0.00 0.00 0.00 2.90
520 535 6.151691 TGTATGTAAAACGTCTGTCTGTACC 58.848 40.000 0.00 0.00 0.00 3.34
521 536 3.631144 TGTAAAACGTCTGTCTGTACCG 58.369 45.455 0.00 0.00 0.00 4.02
522 537 2.877043 AAAACGTCTGTCTGTACCGT 57.123 45.000 0.00 0.00 0.00 4.83
523 538 2.129823 AAACGTCTGTCTGTACCGTG 57.870 50.000 0.00 0.00 0.00 4.94
524 539 1.027357 AACGTCTGTCTGTACCGTGT 58.973 50.000 0.00 0.00 0.00 4.49
525 540 0.590195 ACGTCTGTCTGTACCGTGTC 59.410 55.000 0.00 0.00 0.00 3.67
526 541 0.873054 CGTCTGTCTGTACCGTGTCT 59.127 55.000 0.00 0.00 0.00 3.41
527 542 1.136029 CGTCTGTCTGTACCGTGTCTC 60.136 57.143 0.00 0.00 0.00 3.36
528 543 2.152830 GTCTGTCTGTACCGTGTCTCT 58.847 52.381 0.00 0.00 0.00 3.10
529 544 3.332919 GTCTGTCTGTACCGTGTCTCTA 58.667 50.000 0.00 0.00 0.00 2.43
530 545 3.750130 GTCTGTCTGTACCGTGTCTCTAA 59.250 47.826 0.00 0.00 0.00 2.10
531 546 4.214971 GTCTGTCTGTACCGTGTCTCTAAA 59.785 45.833 0.00 0.00 0.00 1.85
532 547 4.823442 TCTGTCTGTACCGTGTCTCTAAAA 59.177 41.667 0.00 0.00 0.00 1.52
533 548 5.300034 TCTGTCTGTACCGTGTCTCTAAAAA 59.700 40.000 0.00 0.00 0.00 1.94
556 571 9.930693 AAAAACAGTACATGTCAGGTTTAAAAA 57.069 25.926 16.95 0.00 43.00 1.94
577 592 6.449830 AAAAGGAACATACTACAAGTCCCT 57.550 37.500 0.00 0.00 0.00 4.20
578 593 6.449830 AAAGGAACATACTACAAGTCCCTT 57.550 37.500 0.00 0.00 33.37 3.95
579 594 5.422214 AGGAACATACTACAAGTCCCTTG 57.578 43.478 2.54 2.54 45.85 3.61
580 595 5.091552 AGGAACATACTACAAGTCCCTTGA 58.908 41.667 10.73 0.00 43.42 3.02
598 613 4.503991 CCTTGAAGGTGCTCATAGGGATAC 60.504 50.000 2.25 0.00 0.00 2.24
602 617 2.828520 AGGTGCTCATAGGGATACGATG 59.171 50.000 0.00 0.00 37.60 3.84
609 624 3.578282 TCATAGGGATACGATGTGCATGT 59.422 43.478 0.00 0.00 33.52 3.21
610 625 2.245159 AGGGATACGATGTGCATGTG 57.755 50.000 0.00 0.00 37.60 3.21
613 628 2.279741 GGATACGATGTGCATGTGTGT 58.720 47.619 0.00 0.00 0.00 3.72
614 629 2.030823 GGATACGATGTGCATGTGTGTG 59.969 50.000 0.00 0.00 0.00 3.82
620 635 3.124976 CGATGTGCATGTGTGTGTTCATA 59.875 43.478 0.00 0.00 0.00 2.15
621 636 4.201841 CGATGTGCATGTGTGTGTTCATAT 60.202 41.667 0.00 0.00 0.00 1.78
624 639 2.754002 TGCATGTGTGTGTTCATATGGG 59.246 45.455 2.13 0.00 37.39 4.00
625 640 2.754552 GCATGTGTGTGTTCATATGGGT 59.245 45.455 2.13 0.00 37.39 4.51
628 643 4.092116 TGTGTGTGTTCATATGGGTGAA 57.908 40.909 2.13 0.00 35.84 3.18
630 645 4.458642 TGTGTGTGTTCATATGGGTGAATG 59.541 41.667 2.13 0.00 39.99 2.67
631 646 3.443329 TGTGTGTTCATATGGGTGAATGC 59.557 43.478 2.13 0.00 39.99 3.56
638 653 7.174772 GTGTTCATATGGGTGAATGCATGTATA 59.825 37.037 0.00 0.00 39.99 1.47
642 657 9.617523 TCATATGGGTGAATGCATGTATATAAG 57.382 33.333 0.00 0.00 0.00 1.73
643 658 6.764308 ATGGGTGAATGCATGTATATAAGC 57.236 37.500 0.00 0.00 0.00 3.09
644 659 4.694982 TGGGTGAATGCATGTATATAAGCG 59.305 41.667 0.00 0.00 0.00 4.68
646 661 5.163854 GGGTGAATGCATGTATATAAGCGTC 60.164 44.000 0.00 0.00 0.00 5.19
650 665 6.146021 TGAATGCATGTATATAAGCGTCTGTG 59.854 38.462 0.00 0.00 0.00 3.66
652 667 4.744631 TGCATGTATATAAGCGTCTGTGTG 59.255 41.667 0.00 0.00 0.00 3.82
654 669 5.332581 GCATGTATATAAGCGTCTGTGTGTG 60.333 44.000 0.00 0.00 0.00 3.82
655 670 5.319140 TGTATATAAGCGTCTGTGTGTGT 57.681 39.130 0.00 0.00 0.00 3.72
656 671 5.337554 TGTATATAAGCGTCTGTGTGTGTC 58.662 41.667 0.00 0.00 0.00 3.67
657 672 4.720649 ATATAAGCGTCTGTGTGTGTCT 57.279 40.909 0.00 0.00 0.00 3.41
658 673 5.830000 ATATAAGCGTCTGTGTGTGTCTA 57.170 39.130 0.00 0.00 0.00 2.59
724 740 2.872408 CTGGTAATGGGCCAGTGTG 58.128 57.895 18.22 0.00 46.22 3.82
727 743 1.315257 GGTAATGGGCCAGTGTGCTG 61.315 60.000 18.22 0.00 42.22 4.41
754 770 2.653115 CACGCTCAGTGCTCCTCA 59.347 61.111 0.00 0.00 44.72 3.86
755 771 1.005748 CACGCTCAGTGCTCCTCAA 60.006 57.895 0.00 0.00 44.72 3.02
756 772 1.005630 ACGCTCAGTGCTCCTCAAC 60.006 57.895 0.00 0.00 40.11 3.18
757 773 1.739562 CGCTCAGTGCTCCTCAACC 60.740 63.158 0.00 0.00 40.11 3.77
758 774 1.372683 GCTCAGTGCTCCTCAACCA 59.627 57.895 0.00 0.00 38.95 3.67
786 804 1.180029 CCAGAAGCCCAGAACAATGG 58.820 55.000 0.00 0.00 40.29 3.16
804 822 0.744771 GGAAGTAAGCTTGGGCGGAG 60.745 60.000 9.86 0.00 44.37 4.63
856 874 2.113986 AAAGCAGCCGACTTGCCT 59.886 55.556 0.00 0.00 42.48 4.75
857 875 2.263741 AAAGCAGCCGACTTGCCTG 61.264 57.895 0.00 0.00 42.48 4.85
1208 1249 4.143137 GGTACGACGCGAATTTTTCCTTTA 60.143 41.667 15.93 0.00 0.00 1.85
1211 1252 4.685628 ACGACGCGAATTTTTCCTTTACTA 59.314 37.500 15.93 0.00 0.00 1.82
1212 1253 5.349543 ACGACGCGAATTTTTCCTTTACTAT 59.650 36.000 15.93 0.00 0.00 2.12
1213 1254 6.531240 ACGACGCGAATTTTTCCTTTACTATA 59.469 34.615 15.93 0.00 0.00 1.31
1228 1269 3.443099 ACTATAACTAAACCGGTCGCC 57.557 47.619 8.04 0.00 0.00 5.54
1358 1399 3.668491 CGGCGGTAATGAATTCGTGTTTT 60.668 43.478 0.00 0.00 0.00 2.43
1361 1402 4.614078 GCGGTAATGAATTCGTGTTTTGGA 60.614 41.667 0.00 0.00 0.00 3.53
1398 1439 1.512926 GTGTTTCTGTGCGATGGACT 58.487 50.000 0.00 0.00 0.00 3.85
1567 1610 0.035056 AAGGTATGGCTGTGGTCTGC 60.035 55.000 0.00 0.00 37.71 4.26
1602 1645 5.840243 TGGTCAATGATGCTCTAATTTGG 57.160 39.130 0.00 0.00 0.00 3.28
1610 1653 2.446435 TGCTCTAATTTGGCAAGGACC 58.554 47.619 0.00 0.00 32.79 4.46
1612 1655 3.092301 GCTCTAATTTGGCAAGGACCTT 58.908 45.455 0.00 0.00 0.00 3.50
1614 1657 3.696548 CTCTAATTTGGCAAGGACCTTCC 59.303 47.826 2.91 9.51 36.58 3.46
1628 1671 1.209128 CCTTCCGCGATGTGTGTATC 58.791 55.000 8.23 0.00 0.00 2.24
1631 1674 0.815095 TCCGCGATGTGTGTATCAGT 59.185 50.000 8.23 0.00 0.00 3.41
1632 1675 1.200483 CCGCGATGTGTGTATCAGTC 58.800 55.000 8.23 0.00 0.00 3.51
1634 1677 2.463876 CGCGATGTGTGTATCAGTCAT 58.536 47.619 0.00 0.00 0.00 3.06
1651 1694 2.290641 GTCATAATTGGATGACGTGGCC 59.709 50.000 0.00 0.00 44.58 5.36
1654 1697 1.176527 AATTGGATGACGTGGCCTTG 58.823 50.000 3.32 0.00 0.00 3.61
1673 1716 5.742838 GCCTTGTGTTTTTGGATTTGAGGAT 60.743 40.000 0.00 0.00 0.00 3.24
1755 1803 4.574828 CCATTTTCGGTTCATAGTAGGTGG 59.425 45.833 0.00 0.00 0.00 4.61
1774 1822 2.180276 GGTAGTTGAGCTGGAGAAGGA 58.820 52.381 0.00 0.00 0.00 3.36
1939 1988 5.421056 ACTGAGGGACGATAACATCAACTTA 59.579 40.000 0.00 0.00 0.00 2.24
1946 1995 9.106070 GGGACGATAACATCAACTTAAAAGTAT 57.894 33.333 0.00 0.00 38.57 2.12
1992 2041 0.165295 CTGACATGCTGTTGTGCTCG 59.835 55.000 0.00 0.00 0.00 5.03
2177 2226 5.243507 TGTGTCACTTGTGCAATATTTCCAT 59.756 36.000 4.27 0.00 0.00 3.41
2242 2291 9.474249 GTTTGATTAGTAAGCAATAGAACGTTC 57.526 33.333 20.71 20.71 36.57 3.95
2246 2295 8.718102 ATTAGTAAGCAATAGAACGTTCATGT 57.282 30.769 28.78 12.08 0.00 3.21
2256 2306 3.069586 AGAACGTTCATGTCTTGGTGAGA 59.930 43.478 28.78 0.00 0.00 3.27
2265 2315 6.768483 TCATGTCTTGGTGAGATTTTGAGTA 58.232 36.000 0.00 0.00 36.61 2.59
2268 2318 6.533730 TGTCTTGGTGAGATTTTGAGTATGT 58.466 36.000 0.00 0.00 36.61 2.29
2429 2485 1.810030 GAGCCGCGACCGAGAAATT 60.810 57.895 8.23 0.00 36.29 1.82
2443 2499 5.012768 ACCGAGAAATTCTAGACTTCCCAAA 59.987 40.000 4.66 0.00 0.00 3.28
2448 2504 9.320352 GAGAAATTCTAGACTTCCCAAATACTC 57.680 37.037 0.00 0.00 0.00 2.59
2449 2505 8.268605 AGAAATTCTAGACTTCCCAAATACTCC 58.731 37.037 9.26 0.00 0.00 3.85
2450 2506 5.952347 TTCTAGACTTCCCAAATACTCCC 57.048 43.478 0.00 0.00 0.00 4.30
2451 2507 5.222278 TCTAGACTTCCCAAATACTCCCT 57.778 43.478 0.00 0.00 0.00 4.20
2452 2508 5.209659 TCTAGACTTCCCAAATACTCCCTC 58.790 45.833 0.00 0.00 0.00 4.30
2453 2509 3.116174 AGACTTCCCAAATACTCCCTCC 58.884 50.000 0.00 0.00 0.00 4.30
2454 2510 1.838077 ACTTCCCAAATACTCCCTCCG 59.162 52.381 0.00 0.00 0.00 4.63
2455 2511 1.838077 CTTCCCAAATACTCCCTCCGT 59.162 52.381 0.00 0.00 0.00 4.69
2456 2512 1.492764 TCCCAAATACTCCCTCCGTC 58.507 55.000 0.00 0.00 0.00 4.79
2457 2513 0.468648 CCCAAATACTCCCTCCGTCC 59.531 60.000 0.00 0.00 0.00 4.79
2458 2514 0.468648 CCAAATACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46
2459 2515 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
2460 2516 1.768870 CAAATACTCCCTCCGTCCCAT 59.231 52.381 0.00 0.00 0.00 4.00
2461 2517 2.969950 CAAATACTCCCTCCGTCCCATA 59.030 50.000 0.00 0.00 0.00 2.74
2462 2518 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
2463 2519 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2464 2520 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2465 2521 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2466 2522 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2467 2523 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2468 2524 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2469 2525 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2470 2526 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2472 2528 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2473 2529 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2474 2530 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2475 2531 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2476 2532 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2498 2554 8.883789 TTTTTGACACTAAAAACGTCTTACAG 57.116 30.769 0.00 0.00 35.32 2.74
2499 2555 7.599630 TTTGACACTAAAAACGTCTTACAGT 57.400 32.000 0.00 0.00 0.00 3.55
2500 2556 8.700722 TTTGACACTAAAAACGTCTTACAGTA 57.299 30.769 0.00 0.00 0.00 2.74
2501 2557 8.876275 TTGACACTAAAAACGTCTTACAGTAT 57.124 30.769 0.00 0.00 0.00 2.12
2502 2558 8.876275 TGACACTAAAAACGTCTTACAGTATT 57.124 30.769 0.00 0.00 0.00 1.89
2503 2559 8.757789 TGACACTAAAAACGTCTTACAGTATTG 58.242 33.333 0.00 0.00 0.00 1.90
2504 2560 8.080083 ACACTAAAAACGTCTTACAGTATTGG 57.920 34.615 0.00 0.00 0.00 3.16
2505 2561 7.927629 ACACTAAAAACGTCTTACAGTATTGGA 59.072 33.333 0.00 0.00 0.00 3.53
2506 2562 8.219105 CACTAAAAACGTCTTACAGTATTGGAC 58.781 37.037 0.00 0.00 0.00 4.02
2509 2565 3.770263 CGTCTTACAGTATTGGACGGA 57.230 47.619 16.75 0.00 43.69 4.69
2510 2566 3.692576 CGTCTTACAGTATTGGACGGAG 58.307 50.000 16.75 0.00 43.69 4.63
2511 2567 3.488721 CGTCTTACAGTATTGGACGGAGG 60.489 52.174 16.75 0.00 43.69 4.30
2512 2568 3.028850 TCTTACAGTATTGGACGGAGGG 58.971 50.000 0.00 0.00 0.00 4.30
2513 2569 2.832643 TACAGTATTGGACGGAGGGA 57.167 50.000 0.00 0.00 0.00 4.20
2514 2570 1.486211 ACAGTATTGGACGGAGGGAG 58.514 55.000 0.00 0.00 0.00 4.30
2515 2571 1.273098 ACAGTATTGGACGGAGGGAGT 60.273 52.381 0.00 0.00 0.00 3.85
2521 2577 2.195741 TGGACGGAGGGAGTATATCG 57.804 55.000 0.00 0.00 0.00 2.92
2527 2583 3.147629 CGGAGGGAGTATATCGTTCTGT 58.852 50.000 0.00 0.00 0.00 3.41
2534 2590 3.296854 AGTATATCGTTCTGTGGCTGGA 58.703 45.455 0.00 0.00 0.00 3.86
2536 2592 0.535335 TATCGTTCTGTGGCTGGACC 59.465 55.000 0.00 0.00 39.84 4.46
2776 2841 9.449719 CTTTGTGGATTCCAGTATTACTAAACT 57.550 33.333 5.39 0.00 32.34 2.66
2855 2920 6.537660 TGTGCATCTATCAGATCTTCTGTTTG 59.462 38.462 0.00 0.00 44.58 2.93
2856 2921 6.760298 GTGCATCTATCAGATCTTCTGTTTGA 59.240 38.462 0.00 3.92 44.58 2.69
3265 3398 8.870116 AGGTAAATCTATGCAGTTTTCCTTTTT 58.130 29.630 0.00 0.00 0.00 1.94
3266 3399 8.925700 GGTAAATCTATGCAGTTTTCCTTTTTG 58.074 33.333 0.00 0.00 0.00 2.44
3292 3425 9.821662 GAAGACTTGTTTTATTTACGCTGTAAT 57.178 29.630 0.00 0.00 0.00 1.89
3324 3461 9.539139 CTTCTTGCGATCTTAAATTATGCTATG 57.461 33.333 0.00 0.00 0.00 2.23
3325 3462 7.521529 TCTTGCGATCTTAAATTATGCTATGC 58.478 34.615 0.00 0.00 0.00 3.14
3326 3463 6.799926 TGCGATCTTAAATTATGCTATGCA 57.200 33.333 0.00 0.00 44.86 3.96
3602 3739 5.221145 GCAGTCGAAGGATCTGAAGAAGATA 60.221 44.000 4.30 0.00 46.12 1.98
3604 3741 6.039270 CAGTCGAAGGATCTGAAGAAGATAGT 59.961 42.308 0.00 0.00 46.12 2.12
3780 3921 9.495572 GCTTGATATAGTTAAGAAGCCAAGTAT 57.504 33.333 0.00 0.00 33.22 2.12
3794 3935 7.615365 AGAAGCCAAGTATGTTTCATTCCATTA 59.385 33.333 0.00 0.00 0.00 1.90
3841 3982 8.652810 ATTCCATTTTGTATATGCTGCTTTTC 57.347 30.769 0.00 0.00 0.00 2.29
3879 4020 5.235186 CCAAGTAGTATGAATACACAGCAGC 59.765 44.000 3.43 0.00 35.74 5.25
3901 4042 4.210328 GCGTTAAAAATGGTTTGGTTCTGG 59.790 41.667 0.00 0.00 0.00 3.86
3903 4044 5.813157 CGTTAAAAATGGTTTGGTTCTGGTT 59.187 36.000 0.00 0.00 0.00 3.67
3953 4094 5.479375 TCGTAGTGACTGGACCTCTTTATTT 59.521 40.000 0.00 0.00 0.00 1.40
3954 4095 5.577164 CGTAGTGACTGGACCTCTTTATTTG 59.423 44.000 0.00 0.00 0.00 2.32
4070 4211 6.601613 TGTTGAACTCACAGTTTTTATCCTGT 59.398 34.615 0.00 0.00 38.80 4.00
4216 4357 2.155279 GCTCAAACAGGGAGAGAAACC 58.845 52.381 0.00 0.00 34.24 3.27
4296 4437 7.171508 TGTTATCTGACTAGCTGTGAAAACAAG 59.828 37.037 0.00 0.00 0.00 3.16
4378 4519 6.261158 GGGTGCTGATTTTCTAGTTTATCTCC 59.739 42.308 0.00 0.00 0.00 3.71
4379 4520 6.018669 GGTGCTGATTTTCTAGTTTATCTCCG 60.019 42.308 0.00 0.00 0.00 4.63
4434 4575 5.050091 GCACTCTATTATCGACCCATTTGTG 60.050 44.000 0.00 0.00 0.00 3.33
4488 4629 6.491403 TCATATGACTAGTGCAGCTCTATTGA 59.509 38.462 0.00 0.00 0.00 2.57
4940 5081 6.164408 TCAAATCACTGCGTAAACATACAG 57.836 37.500 0.00 0.00 36.22 2.74
5013 5154 7.014808 CCCACAAAGATAAGGTAACCTTTTCAA 59.985 37.037 0.64 0.00 41.69 2.69
5021 5162 6.553953 AAGGTAACCTTTTCAATTTGTGGT 57.446 33.333 0.00 0.00 41.69 4.16
5027 5168 6.553953 ACCTTTTCAATTTGTGGTTTACCT 57.446 33.333 0.00 0.00 36.82 3.08
5044 5185 2.807676 ACCTTTTGCATACTTCTGGGG 58.192 47.619 0.00 0.00 0.00 4.96
5066 5208 4.142227 GGCAAATGAGATGCTCAACAGAAT 60.142 41.667 0.78 0.00 44.04 2.40
5091 5233 3.206150 CTGGATGTAGGTTTTATGCGCT 58.794 45.455 9.73 0.00 0.00 5.92
5106 5248 1.937546 GCGCTGATTGGTGGAAAGGG 61.938 60.000 0.00 0.00 0.00 3.95
5190 5333 3.580458 CGTGAGAAGATTCCCTCCCATAT 59.420 47.826 0.00 0.00 0.00 1.78
5191 5334 4.562347 CGTGAGAAGATTCCCTCCCATATG 60.562 50.000 0.00 0.00 0.00 1.78
5192 5335 4.349342 GTGAGAAGATTCCCTCCCATATGT 59.651 45.833 1.24 0.00 0.00 2.29
5237 5400 8.647226 GTTTTAACCATCTCAATTTTGAATCGG 58.353 33.333 0.00 0.00 36.64 4.18
5363 5529 5.989477 TCCAGACTATATTGGTTGACAAGG 58.011 41.667 0.00 0.00 43.48 3.61
5384 5551 3.008485 GGCATCCCAAAAACCAAACCATA 59.992 43.478 0.00 0.00 0.00 2.74
5412 5580 1.290009 GTTGGAAGCATGTGCACCC 59.710 57.895 15.69 7.53 45.16 4.61
5668 5838 8.328146 GTTTTTGTTTTACTTCAGCATTCCTTC 58.672 33.333 0.00 0.00 0.00 3.46
5710 5908 5.359292 TGTGTCATAAGATCTCTCTCACAGG 59.641 44.000 0.00 0.00 0.00 4.00
5759 5960 2.359975 GTACCTGCCCTGCACACC 60.360 66.667 0.00 0.00 33.79 4.16
5866 6069 2.983136 CTCTGAAACGCAGTGTAGACAG 59.017 50.000 0.00 8.09 45.00 3.51
5871 6074 1.174783 ACGCAGTGTAGACAGGTAGG 58.825 55.000 0.00 0.00 42.51 3.18
5874 6077 1.204941 GCAGTGTAGACAGGTAGGTGG 59.795 57.143 0.00 0.00 0.00 4.61
5895 6098 1.280066 CAAACTTGTTGCAAAGCGCT 58.720 45.000 2.64 2.64 43.06 5.92
5985 6193 1.598130 GACTCAAACCGCACTGCCT 60.598 57.895 0.00 0.00 0.00 4.75
6036 6258 2.858646 GCTTTGAAAAACTCTGCCGTCC 60.859 50.000 0.00 0.00 0.00 4.79
6042 6264 0.832135 AAACTCTGCCGTCCTCCTCA 60.832 55.000 0.00 0.00 0.00 3.86
6062 6284 1.633774 TCGGGCTTCTTCTCTCTTGT 58.366 50.000 0.00 0.00 0.00 3.16
6070 6292 2.838736 TCTTCTCTCTTGTGTTGCCAC 58.161 47.619 0.00 0.00 42.19 5.01
6092 6314 2.169789 CAGTGCGGCGAGAATCCTG 61.170 63.158 12.98 2.21 0.00 3.86
6146 6368 4.021925 GAGGTGCCACCGCTTCCT 62.022 66.667 10.66 3.49 44.90 3.36
6167 6389 0.763035 AGGTAGAACTGCCACCGTTT 59.237 50.000 11.14 0.00 37.85 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 124 5.289193 CACGACCATGAAAATTATTGGCTTG 59.711 40.000 0.00 0.00 32.26 4.01
110 125 5.410067 CACGACCATGAAAATTATTGGCTT 58.590 37.500 0.00 0.00 32.26 4.35
111 126 4.677779 GCACGACCATGAAAATTATTGGCT 60.678 41.667 0.00 0.00 32.26 4.75
112 127 3.551485 GCACGACCATGAAAATTATTGGC 59.449 43.478 0.00 0.00 32.26 4.52
113 128 4.997565 AGCACGACCATGAAAATTATTGG 58.002 39.130 0.00 0.00 35.31 3.16
114 129 5.971202 GGTAGCACGACCATGAAAATTATTG 59.029 40.000 0.00 0.00 39.51 1.90
115 130 5.885912 AGGTAGCACGACCATGAAAATTATT 59.114 36.000 2.69 0.00 42.47 1.40
116 131 5.437060 AGGTAGCACGACCATGAAAATTAT 58.563 37.500 2.69 0.00 42.47 1.28
117 132 4.839121 AGGTAGCACGACCATGAAAATTA 58.161 39.130 2.69 0.00 42.47 1.40
118 133 3.686016 AGGTAGCACGACCATGAAAATT 58.314 40.909 2.69 0.00 42.47 1.82
119 134 3.350219 AGGTAGCACGACCATGAAAAT 57.650 42.857 2.69 0.00 42.47 1.82
120 135 2.851263 AGGTAGCACGACCATGAAAA 57.149 45.000 2.69 0.00 42.47 2.29
121 136 2.811431 CAAAGGTAGCACGACCATGAAA 59.189 45.455 2.69 0.00 42.47 2.69
122 137 2.422597 CAAAGGTAGCACGACCATGAA 58.577 47.619 2.69 0.00 42.47 2.57
123 138 1.338674 CCAAAGGTAGCACGACCATGA 60.339 52.381 2.69 0.00 42.47 3.07
124 139 1.086696 CCAAAGGTAGCACGACCATG 58.913 55.000 2.69 1.56 42.47 3.66
125 140 0.690762 ACCAAAGGTAGCACGACCAT 59.309 50.000 2.69 0.00 42.47 3.55
126 141 1.340088 TACCAAAGGTAGCACGACCA 58.660 50.000 2.69 0.00 42.47 4.02
127 142 2.685850 ATACCAAAGGTAGCACGACC 57.314 50.000 2.07 0.00 41.83 4.79
128 143 3.373130 GGAAATACCAAAGGTAGCACGAC 59.627 47.826 2.07 0.00 41.83 4.34
129 144 3.262405 AGGAAATACCAAAGGTAGCACGA 59.738 43.478 2.07 0.00 41.83 4.35
130 145 3.606687 AGGAAATACCAAAGGTAGCACG 58.393 45.455 2.07 0.00 41.83 5.34
131 146 5.742063 AGTAGGAAATACCAAAGGTAGCAC 58.258 41.667 2.07 0.00 41.83 4.40
132 147 7.685849 ATAGTAGGAAATACCAAAGGTAGCA 57.314 36.000 2.07 0.00 41.83 3.49
152 167 9.712305 GCTCACTCAACAATACCAATATATAGT 57.288 33.333 0.00 0.00 0.00 2.12
153 168 9.935241 AGCTCACTCAACAATACCAATATATAG 57.065 33.333 0.00 0.00 0.00 1.31
155 170 9.060347 CAAGCTCACTCAACAATACCAATATAT 57.940 33.333 0.00 0.00 0.00 0.86
156 171 7.498900 CCAAGCTCACTCAACAATACCAATATA 59.501 37.037 0.00 0.00 0.00 0.86
157 172 6.319658 CCAAGCTCACTCAACAATACCAATAT 59.680 38.462 0.00 0.00 0.00 1.28
158 173 5.647658 CCAAGCTCACTCAACAATACCAATA 59.352 40.000 0.00 0.00 0.00 1.90
159 174 4.460382 CCAAGCTCACTCAACAATACCAAT 59.540 41.667 0.00 0.00 0.00 3.16
160 175 3.820467 CCAAGCTCACTCAACAATACCAA 59.180 43.478 0.00 0.00 0.00 3.67
161 176 3.411446 CCAAGCTCACTCAACAATACCA 58.589 45.455 0.00 0.00 0.00 3.25
162 177 2.162408 GCCAAGCTCACTCAACAATACC 59.838 50.000 0.00 0.00 0.00 2.73
163 178 3.077359 AGCCAAGCTCACTCAACAATAC 58.923 45.455 0.00 0.00 30.62 1.89
164 179 3.423539 AGCCAAGCTCACTCAACAATA 57.576 42.857 0.00 0.00 30.62 1.90
165 180 2.283145 AGCCAAGCTCACTCAACAAT 57.717 45.000 0.00 0.00 30.62 2.71
166 181 2.928801 TAGCCAAGCTCACTCAACAA 57.071 45.000 0.00 0.00 40.44 2.83
167 182 4.020218 ACTTATAGCCAAGCTCACTCAACA 60.020 41.667 0.00 0.00 40.44 3.33
168 183 4.508662 ACTTATAGCCAAGCTCACTCAAC 58.491 43.478 0.00 0.00 40.44 3.18
169 184 4.826274 ACTTATAGCCAAGCTCACTCAA 57.174 40.909 0.00 0.00 40.44 3.02
170 185 4.020218 ACAACTTATAGCCAAGCTCACTCA 60.020 41.667 0.00 0.00 40.44 3.41
171 186 4.508662 ACAACTTATAGCCAAGCTCACTC 58.491 43.478 0.00 0.00 40.44 3.51
172 187 4.020218 TGACAACTTATAGCCAAGCTCACT 60.020 41.667 0.00 0.00 40.44 3.41
173 188 4.253685 TGACAACTTATAGCCAAGCTCAC 58.746 43.478 0.00 0.00 40.44 3.51
174 189 4.222810 TCTGACAACTTATAGCCAAGCTCA 59.777 41.667 0.00 0.00 40.44 4.26
175 190 4.759782 TCTGACAACTTATAGCCAAGCTC 58.240 43.478 0.00 0.00 40.44 4.09
176 191 4.826274 TCTGACAACTTATAGCCAAGCT 57.174 40.909 0.00 0.00 43.41 3.74
177 192 4.274459 CCATCTGACAACTTATAGCCAAGC 59.726 45.833 0.00 0.00 0.00 4.01
178 193 4.274459 GCCATCTGACAACTTATAGCCAAG 59.726 45.833 0.00 0.00 0.00 3.61
179 194 4.080356 AGCCATCTGACAACTTATAGCCAA 60.080 41.667 0.00 0.00 0.00 4.52
180 195 3.455910 AGCCATCTGACAACTTATAGCCA 59.544 43.478 0.00 0.00 0.00 4.75
181 196 4.061596 GAGCCATCTGACAACTTATAGCC 58.938 47.826 0.00 0.00 0.00 3.93
182 197 4.954875 AGAGCCATCTGACAACTTATAGC 58.045 43.478 0.00 0.00 33.30 2.97
183 198 6.577103 TCAAGAGCCATCTGACAACTTATAG 58.423 40.000 0.00 0.00 35.37 1.31
184 199 6.544928 TCAAGAGCCATCTGACAACTTATA 57.455 37.500 0.00 0.00 35.37 0.98
185 200 5.426689 TCAAGAGCCATCTGACAACTTAT 57.573 39.130 0.00 0.00 35.37 1.73
186 201 4.890158 TCAAGAGCCATCTGACAACTTA 57.110 40.909 0.00 0.00 35.37 2.24
187 202 3.777106 TCAAGAGCCATCTGACAACTT 57.223 42.857 0.00 0.00 35.37 2.66
188 203 3.996921 ATCAAGAGCCATCTGACAACT 57.003 42.857 0.00 0.00 35.37 3.16
189 204 4.005650 TGAATCAAGAGCCATCTGACAAC 58.994 43.478 0.00 0.00 35.37 3.32
190 205 4.290711 TGAATCAAGAGCCATCTGACAA 57.709 40.909 0.00 0.00 35.37 3.18
191 206 3.986996 TGAATCAAGAGCCATCTGACA 57.013 42.857 0.00 0.00 35.37 3.58
192 207 5.356190 TGAAATGAATCAAGAGCCATCTGAC 59.644 40.000 0.00 0.00 35.37 3.51
193 208 5.503002 TGAAATGAATCAAGAGCCATCTGA 58.497 37.500 0.00 0.00 35.37 3.27
194 209 5.589050 TCTGAAATGAATCAAGAGCCATCTG 59.411 40.000 0.00 0.00 35.37 2.90
195 210 5.752650 TCTGAAATGAATCAAGAGCCATCT 58.247 37.500 0.00 0.00 37.39 2.90
196 211 6.636562 ATCTGAAATGAATCAAGAGCCATC 57.363 37.500 0.00 0.00 0.00 3.51
197 212 7.123697 TGAAATCTGAAATGAATCAAGAGCCAT 59.876 33.333 0.00 0.00 0.00 4.40
198 213 6.434965 TGAAATCTGAAATGAATCAAGAGCCA 59.565 34.615 0.00 0.00 0.00 4.75
199 214 6.750963 GTGAAATCTGAAATGAATCAAGAGCC 59.249 38.462 0.00 0.00 0.00 4.70
200 215 7.272948 GTGTGAAATCTGAAATGAATCAAGAGC 59.727 37.037 0.00 0.00 0.00 4.09
201 216 8.294577 TGTGTGAAATCTGAAATGAATCAAGAG 58.705 33.333 0.00 0.00 0.00 2.85
202 217 8.077991 GTGTGTGAAATCTGAAATGAATCAAGA 58.922 33.333 0.00 0.00 0.00 3.02
203 218 7.060289 CGTGTGTGAAATCTGAAATGAATCAAG 59.940 37.037 0.00 0.00 0.00 3.02
204 219 6.857451 CGTGTGTGAAATCTGAAATGAATCAA 59.143 34.615 0.00 0.00 0.00 2.57
205 220 6.372981 CGTGTGTGAAATCTGAAATGAATCA 58.627 36.000 0.00 0.00 0.00 2.57
206 221 5.284660 GCGTGTGTGAAATCTGAAATGAATC 59.715 40.000 0.00 0.00 0.00 2.52
207 222 5.048504 AGCGTGTGTGAAATCTGAAATGAAT 60.049 36.000 0.00 0.00 0.00 2.57
208 223 4.275689 AGCGTGTGTGAAATCTGAAATGAA 59.724 37.500 0.00 0.00 0.00 2.57
209 224 3.814842 AGCGTGTGTGAAATCTGAAATGA 59.185 39.130 0.00 0.00 0.00 2.57
210 225 4.083643 AGAGCGTGTGTGAAATCTGAAATG 60.084 41.667 0.00 0.00 0.00 2.32
211 226 4.067896 AGAGCGTGTGTGAAATCTGAAAT 58.932 39.130 0.00 0.00 0.00 2.17
212 227 3.248363 CAGAGCGTGTGTGAAATCTGAAA 59.752 43.478 0.00 0.00 37.03 2.69
213 228 2.802247 CAGAGCGTGTGTGAAATCTGAA 59.198 45.455 0.00 0.00 37.03 3.02
214 229 2.407090 CAGAGCGTGTGTGAAATCTGA 58.593 47.619 0.00 0.00 37.03 3.27
215 230 1.136141 GCAGAGCGTGTGTGAAATCTG 60.136 52.381 0.00 0.00 37.74 2.90
216 231 1.151668 GCAGAGCGTGTGTGAAATCT 58.848 50.000 0.00 0.00 0.00 2.40
217 232 1.151668 AGCAGAGCGTGTGTGAAATC 58.848 50.000 0.00 0.00 0.00 2.17
218 233 2.455674 TAGCAGAGCGTGTGTGAAAT 57.544 45.000 0.00 0.00 0.00 2.17
219 234 2.232756 TTAGCAGAGCGTGTGTGAAA 57.767 45.000 0.00 0.00 0.00 2.69
220 235 2.288763 TGATTAGCAGAGCGTGTGTGAA 60.289 45.455 0.00 0.00 0.00 3.18
221 236 1.272212 TGATTAGCAGAGCGTGTGTGA 59.728 47.619 0.00 0.00 0.00 3.58
222 237 1.713597 TGATTAGCAGAGCGTGTGTG 58.286 50.000 0.00 0.00 0.00 3.82
223 238 2.680312 ATGATTAGCAGAGCGTGTGT 57.320 45.000 0.00 0.00 0.00 3.72
224 239 4.705554 CTAATGATTAGCAGAGCGTGTG 57.294 45.455 0.00 0.00 0.00 3.82
243 258 7.096551 GGAAAAACAATTAGCTTGGATTGCTA 58.903 34.615 13.76 0.00 41.46 3.49
244 259 5.934043 GGAAAAACAATTAGCTTGGATTGCT 59.066 36.000 13.76 0.00 43.79 3.91
245 260 5.700373 TGGAAAAACAATTAGCTTGGATTGC 59.300 36.000 13.76 1.97 39.30 3.56
246 261 7.910441 ATGGAAAAACAATTAGCTTGGATTG 57.090 32.000 12.77 12.77 39.30 2.67
249 264 9.474313 AGTATATGGAAAAACAATTAGCTTGGA 57.526 29.630 0.00 0.00 39.30 3.53
250 265 9.520204 CAGTATATGGAAAAACAATTAGCTTGG 57.480 33.333 0.00 0.00 39.30 3.61
282 297 8.511321 GGTTTCATCTACACAACACATTCAATA 58.489 33.333 0.00 0.00 0.00 1.90
283 298 7.014134 TGGTTTCATCTACACAACACATTCAAT 59.986 33.333 0.00 0.00 0.00 2.57
284 299 6.319911 TGGTTTCATCTACACAACACATTCAA 59.680 34.615 0.00 0.00 0.00 2.69
285 300 5.825151 TGGTTTCATCTACACAACACATTCA 59.175 36.000 0.00 0.00 0.00 2.57
286 301 6.312399 TGGTTTCATCTACACAACACATTC 57.688 37.500 0.00 0.00 0.00 2.67
287 302 6.707440 TTGGTTTCATCTACACAACACATT 57.293 33.333 0.00 0.00 0.00 2.71
288 303 6.096141 TGTTTGGTTTCATCTACACAACACAT 59.904 34.615 0.00 0.00 0.00 3.21
289 304 5.416013 TGTTTGGTTTCATCTACACAACACA 59.584 36.000 0.00 0.00 0.00 3.72
290 305 5.885881 TGTTTGGTTTCATCTACACAACAC 58.114 37.500 0.00 0.00 0.00 3.32
291 306 5.067153 CCTGTTTGGTTTCATCTACACAACA 59.933 40.000 0.00 0.00 0.00 3.33
292 307 5.298276 TCCTGTTTGGTTTCATCTACACAAC 59.702 40.000 0.00 0.00 37.07 3.32
293 308 5.441500 TCCTGTTTGGTTTCATCTACACAA 58.558 37.500 0.00 0.00 37.07 3.33
294 309 5.042463 TCCTGTTTGGTTTCATCTACACA 57.958 39.130 0.00 0.00 37.07 3.72
295 310 4.455877 CCTCCTGTTTGGTTTCATCTACAC 59.544 45.833 0.00 0.00 37.07 2.90
296 311 4.651778 CCTCCTGTTTGGTTTCATCTACA 58.348 43.478 0.00 0.00 37.07 2.74
297 312 3.440522 GCCTCCTGTTTGGTTTCATCTAC 59.559 47.826 0.00 0.00 37.07 2.59
298 313 3.686016 GCCTCCTGTTTGGTTTCATCTA 58.314 45.455 0.00 0.00 37.07 1.98
299 314 2.519013 GCCTCCTGTTTGGTTTCATCT 58.481 47.619 0.00 0.00 37.07 2.90
300 315 1.200020 CGCCTCCTGTTTGGTTTCATC 59.800 52.381 0.00 0.00 37.07 2.92
301 316 1.247567 CGCCTCCTGTTTGGTTTCAT 58.752 50.000 0.00 0.00 37.07 2.57
302 317 1.452145 GCGCCTCCTGTTTGGTTTCA 61.452 55.000 0.00 0.00 37.07 2.69
303 318 1.285950 GCGCCTCCTGTTTGGTTTC 59.714 57.895 0.00 0.00 37.07 2.78
304 319 1.040339 TTGCGCCTCCTGTTTGGTTT 61.040 50.000 4.18 0.00 37.07 3.27
305 320 1.040339 TTTGCGCCTCCTGTTTGGTT 61.040 50.000 4.18 0.00 37.07 3.67
306 321 1.040339 TTTTGCGCCTCCTGTTTGGT 61.040 50.000 4.18 0.00 37.07 3.67
307 322 0.318120 ATTTTGCGCCTCCTGTTTGG 59.682 50.000 4.18 0.00 37.10 3.28
308 323 2.153366 AATTTTGCGCCTCCTGTTTG 57.847 45.000 4.18 0.00 0.00 2.93
309 324 2.625790 TGTAATTTTGCGCCTCCTGTTT 59.374 40.909 4.18 0.00 0.00 2.83
310 325 2.235016 TGTAATTTTGCGCCTCCTGTT 58.765 42.857 4.18 0.00 0.00 3.16
311 326 1.904287 TGTAATTTTGCGCCTCCTGT 58.096 45.000 4.18 0.00 0.00 4.00
312 327 3.508744 AATGTAATTTTGCGCCTCCTG 57.491 42.857 4.18 0.00 26.74 3.86
313 328 7.524717 AATATAATGTAATTTTGCGCCTCCT 57.475 32.000 4.18 0.00 37.87 3.69
314 329 7.651704 ACAAATATAATGTAATTTTGCGCCTCC 59.348 33.333 4.18 0.00 37.87 4.30
315 330 8.574196 ACAAATATAATGTAATTTTGCGCCTC 57.426 30.769 4.18 0.00 37.87 4.70
316 331 8.940768 AACAAATATAATGTAATTTTGCGCCT 57.059 26.923 4.18 0.00 37.87 5.52
403 418 9.143631 GTGCTATTTTACAAAATGAAGAAGCAT 57.856 29.630 17.93 0.00 42.29 3.79
404 419 8.140628 TGTGCTATTTTACAAAATGAAGAAGCA 58.859 29.630 13.77 13.77 40.15 3.91
405 420 8.427774 GTGTGCTATTTTACAAAATGAAGAAGC 58.572 33.333 9.64 9.98 38.90 3.86
406 421 9.462174 TGTGTGCTATTTTACAAAATGAAGAAG 57.538 29.630 9.64 1.31 38.90 2.85
407 422 9.809096 TTGTGTGCTATTTTACAAAATGAAGAA 57.191 25.926 9.64 0.00 38.90 2.52
408 423 9.809096 TTTGTGTGCTATTTTACAAAATGAAGA 57.191 25.926 9.64 0.00 39.31 2.87
437 452 9.062524 CCGTCCATTTGTCCATTTAAATATAGA 57.937 33.333 0.00 0.00 0.00 1.98
438 453 8.296713 CCCGTCCATTTGTCCATTTAAATATAG 58.703 37.037 0.00 0.00 0.00 1.31
439 454 7.255660 GCCCGTCCATTTGTCCATTTAAATATA 60.256 37.037 0.00 0.00 0.00 0.86
440 455 6.462347 GCCCGTCCATTTGTCCATTTAAATAT 60.462 38.462 0.00 0.00 0.00 1.28
441 456 5.163499 GCCCGTCCATTTGTCCATTTAAATA 60.163 40.000 0.00 0.00 0.00 1.40
442 457 4.382577 GCCCGTCCATTTGTCCATTTAAAT 60.383 41.667 0.00 0.00 0.00 1.40
443 458 3.056465 GCCCGTCCATTTGTCCATTTAAA 60.056 43.478 0.00 0.00 0.00 1.52
444 459 2.494073 GCCCGTCCATTTGTCCATTTAA 59.506 45.455 0.00 0.00 0.00 1.52
445 460 2.096248 GCCCGTCCATTTGTCCATTTA 58.904 47.619 0.00 0.00 0.00 1.40
446 461 0.894835 GCCCGTCCATTTGTCCATTT 59.105 50.000 0.00 0.00 0.00 2.32
447 462 1.312371 CGCCCGTCCATTTGTCCATT 61.312 55.000 0.00 0.00 0.00 3.16
448 463 1.748879 CGCCCGTCCATTTGTCCAT 60.749 57.895 0.00 0.00 0.00 3.41
449 464 2.359354 CGCCCGTCCATTTGTCCA 60.359 61.111 0.00 0.00 0.00 4.02
450 465 3.810896 GCGCCCGTCCATTTGTCC 61.811 66.667 0.00 0.00 0.00 4.02
451 466 4.160635 CGCGCCCGTCCATTTGTC 62.161 66.667 0.00 0.00 0.00 3.18
473 488 4.633596 GATCGTTGATGGCGCGCG 62.634 66.667 28.44 28.44 0.00 6.86
474 489 1.880601 CTAGATCGTTGATGGCGCGC 61.881 60.000 25.94 25.94 0.00 6.86
475 490 0.595053 ACTAGATCGTTGATGGCGCG 60.595 55.000 0.00 0.00 0.00 6.86
476 491 2.417339 TACTAGATCGTTGATGGCGC 57.583 50.000 0.00 0.00 0.00 6.53
477 492 3.902150 ACATACTAGATCGTTGATGGCG 58.098 45.455 0.00 0.00 0.00 5.69
478 493 6.390721 ACATACATACTAGATCGTTGATGGC 58.609 40.000 0.00 0.00 0.00 4.40
479 494 9.908152 TTTACATACATACTAGATCGTTGATGG 57.092 33.333 0.00 0.00 0.00 3.51
482 497 9.442033 CGTTTTACATACATACTAGATCGTTGA 57.558 33.333 0.00 0.00 0.00 3.18
483 498 9.229784 ACGTTTTACATACATACTAGATCGTTG 57.770 33.333 0.00 0.00 0.00 4.10
484 499 9.443283 GACGTTTTACATACATACTAGATCGTT 57.557 33.333 0.00 0.00 0.00 3.85
485 500 8.834465 AGACGTTTTACATACATACTAGATCGT 58.166 33.333 0.00 0.00 0.00 3.73
486 501 9.104126 CAGACGTTTTACATACATACTAGATCG 57.896 37.037 0.00 0.00 0.00 3.69
487 502 9.947669 ACAGACGTTTTACATACATACTAGATC 57.052 33.333 0.00 0.00 0.00 2.75
488 503 9.947669 GACAGACGTTTTACATACATACTAGAT 57.052 33.333 0.00 0.00 0.00 1.98
489 504 9.170734 AGACAGACGTTTTACATACATACTAGA 57.829 33.333 0.00 0.00 0.00 2.43
490 505 9.222916 CAGACAGACGTTTTACATACATACTAG 57.777 37.037 0.00 0.00 0.00 2.57
491 506 8.733458 ACAGACAGACGTTTTACATACATACTA 58.267 33.333 0.00 0.00 0.00 1.82
492 507 7.600065 ACAGACAGACGTTTTACATACATACT 58.400 34.615 0.00 0.00 0.00 2.12
493 508 7.807687 ACAGACAGACGTTTTACATACATAC 57.192 36.000 0.00 0.00 0.00 2.39
494 509 7.970061 GGTACAGACAGACGTTTTACATACATA 59.030 37.037 0.00 0.00 0.00 2.29
495 510 6.810182 GGTACAGACAGACGTTTTACATACAT 59.190 38.462 0.00 0.00 0.00 2.29
496 511 6.151691 GGTACAGACAGACGTTTTACATACA 58.848 40.000 0.00 0.00 0.00 2.29
497 512 5.284660 CGGTACAGACAGACGTTTTACATAC 59.715 44.000 0.00 0.00 0.00 2.39
498 513 5.048782 ACGGTACAGACAGACGTTTTACATA 60.049 40.000 0.00 0.00 33.54 2.29
499 514 4.232221 CGGTACAGACAGACGTTTTACAT 58.768 43.478 0.00 0.00 0.00 2.29
500 515 3.066621 ACGGTACAGACAGACGTTTTACA 59.933 43.478 0.00 0.00 33.54 2.41
501 516 3.423206 CACGGTACAGACAGACGTTTTAC 59.577 47.826 0.00 0.00 35.36 2.01
502 517 3.066621 ACACGGTACAGACAGACGTTTTA 59.933 43.478 0.00 0.00 35.36 1.52
503 518 2.159198 ACACGGTACAGACAGACGTTTT 60.159 45.455 0.00 0.00 35.36 2.43
504 519 1.406539 ACACGGTACAGACAGACGTTT 59.593 47.619 0.00 0.00 35.36 3.60
505 520 1.002033 GACACGGTACAGACAGACGTT 60.002 52.381 0.00 0.00 35.36 3.99
506 521 0.590195 GACACGGTACAGACAGACGT 59.410 55.000 0.00 0.00 38.43 4.34
507 522 0.873054 AGACACGGTACAGACAGACG 59.127 55.000 0.00 0.00 0.00 4.18
508 523 2.152830 AGAGACACGGTACAGACAGAC 58.847 52.381 0.00 0.00 0.00 3.51
509 524 2.563261 AGAGACACGGTACAGACAGA 57.437 50.000 0.00 0.00 0.00 3.41
510 525 4.761235 TTTAGAGACACGGTACAGACAG 57.239 45.455 0.00 0.00 0.00 3.51
511 526 5.518848 TTTTTAGAGACACGGTACAGACA 57.481 39.130 0.00 0.00 0.00 3.41
530 545 9.930693 TTTTTAAACCTGACATGTACTGTTTTT 57.069 25.926 18.48 8.72 38.54 1.94
553 568 6.849151 AGGGACTTGTAGTATGTTCCTTTTT 58.151 36.000 0.00 0.00 38.91 1.94
554 569 6.449830 AGGGACTTGTAGTATGTTCCTTTT 57.550 37.500 0.00 0.00 38.91 2.27
571 586 1.366319 ATGAGCACCTTCAAGGGACT 58.634 50.000 8.75 4.07 40.58 3.85
572 587 2.420687 CCTATGAGCACCTTCAAGGGAC 60.421 54.545 8.75 0.00 40.58 4.46
573 588 1.839994 CCTATGAGCACCTTCAAGGGA 59.160 52.381 8.75 0.00 40.58 4.20
574 589 1.133976 CCCTATGAGCACCTTCAAGGG 60.134 57.143 8.75 0.00 40.58 3.95
575 590 1.839994 TCCCTATGAGCACCTTCAAGG 59.160 52.381 0.22 0.22 42.49 3.61
576 591 3.853355 ATCCCTATGAGCACCTTCAAG 57.147 47.619 0.00 0.00 0.00 3.02
577 592 3.069586 CGTATCCCTATGAGCACCTTCAA 59.930 47.826 0.00 0.00 0.00 2.69
578 593 2.628178 CGTATCCCTATGAGCACCTTCA 59.372 50.000 0.00 0.00 0.00 3.02
579 594 2.891580 TCGTATCCCTATGAGCACCTTC 59.108 50.000 0.00 0.00 0.00 3.46
580 595 2.958818 TCGTATCCCTATGAGCACCTT 58.041 47.619 0.00 0.00 0.00 3.50
598 613 1.263752 TGAACACACACATGCACATCG 59.736 47.619 0.00 0.00 0.00 3.84
602 617 3.427909 CCCATATGAACACACACATGCAC 60.428 47.826 3.65 0.00 0.00 4.57
609 624 3.443329 GCATTCACCCATATGAACACACA 59.557 43.478 3.65 0.00 41.29 3.72
610 625 3.443329 TGCATTCACCCATATGAACACAC 59.557 43.478 3.65 0.00 41.29 3.82
613 628 4.279982 ACATGCATTCACCCATATGAACA 58.720 39.130 3.65 0.00 41.29 3.18
614 629 4.924305 ACATGCATTCACCCATATGAAC 57.076 40.909 3.65 0.00 41.29 3.18
620 635 5.355071 CGCTTATATACATGCATTCACCCAT 59.645 40.000 0.00 0.00 0.00 4.00
621 636 4.694982 CGCTTATATACATGCATTCACCCA 59.305 41.667 0.00 0.00 0.00 4.51
624 639 6.146184 ACAGACGCTTATATACATGCATTCAC 59.854 38.462 0.00 0.00 0.00 3.18
625 640 6.146021 CACAGACGCTTATATACATGCATTCA 59.854 38.462 0.00 0.00 0.00 2.57
628 643 5.406477 CACACAGACGCTTATATACATGCAT 59.594 40.000 0.00 0.00 0.00 3.96
630 645 4.745125 ACACACAGACGCTTATATACATGC 59.255 41.667 0.00 0.00 0.00 4.06
631 646 5.748630 ACACACACAGACGCTTATATACATG 59.251 40.000 0.00 0.00 0.00 3.21
638 653 4.514781 TTAGACACACACAGACGCTTAT 57.485 40.909 0.00 0.00 0.00 1.73
642 657 3.936902 TTTTTAGACACACACAGACGC 57.063 42.857 0.00 0.00 0.00 5.19
686 701 1.812571 GCTGGGACCTGTAATGTGTTG 59.187 52.381 0.00 0.00 0.00 3.33
746 762 0.179020 CCAGTGTTGGTTGAGGAGCA 60.179 55.000 0.00 0.00 39.79 4.26
747 763 0.890996 CCCAGTGTTGGTTGAGGAGC 60.891 60.000 0.00 0.00 43.40 4.70
748 764 0.890996 GCCCAGTGTTGGTTGAGGAG 60.891 60.000 0.00 0.00 43.40 3.69
749 765 1.150536 GCCCAGTGTTGGTTGAGGA 59.849 57.895 0.00 0.00 43.40 3.71
750 766 1.903404 GGCCCAGTGTTGGTTGAGG 60.903 63.158 0.00 0.00 43.40 3.86
754 770 0.468029 CTTCTGGCCCAGTGTTGGTT 60.468 55.000 11.27 0.00 43.40 3.67
755 771 1.151450 CTTCTGGCCCAGTGTTGGT 59.849 57.895 11.27 0.00 43.40 3.67
756 772 2.270986 GCTTCTGGCCCAGTGTTGG 61.271 63.158 11.27 0.00 44.60 3.77
757 773 3.359002 GCTTCTGGCCCAGTGTTG 58.641 61.111 11.27 0.96 32.61 3.33
786 804 0.249398 TCTCCGCCCAAGCTTACTTC 59.751 55.000 0.00 0.00 36.60 3.01
804 822 2.476185 GCAGGTGTCGTGTTATTGCATC 60.476 50.000 0.00 0.00 0.00 3.91
870 897 1.803519 CGACTGCAGAACTCGGAGC 60.804 63.158 23.35 0.00 0.00 4.70
1163 1204 4.473520 CCAGGGCTAGGGTGCGTG 62.474 72.222 0.00 0.00 0.00 5.34
1208 1249 2.101415 GGGCGACCGGTTTAGTTATAGT 59.899 50.000 9.42 0.00 43.64 2.12
1211 1252 3.766644 GGGCGACCGGTTTAGTTAT 57.233 52.632 9.42 0.00 43.64 1.89
1398 1439 3.369892 CCCCACACAATTTTCACAACCAA 60.370 43.478 0.00 0.00 0.00 3.67
1461 1502 1.669265 GCCACGGCTTTTATGTACTCC 59.331 52.381 0.00 0.00 38.26 3.85
1485 1528 2.045536 GGTGGCTCCTGCTTCCTG 60.046 66.667 0.00 0.00 39.59 3.86
1567 1610 6.459298 GCATCATTGACCAACTAAATCCTCAG 60.459 42.308 0.00 0.00 0.00 3.35
1602 1645 2.125106 ATCGCGGAAGGTCCTTGC 60.125 61.111 9.46 11.44 33.30 4.01
1610 1653 1.854743 CTGATACACACATCGCGGAAG 59.145 52.381 6.13 0.00 0.00 3.46
1612 1655 0.815095 ACTGATACACACATCGCGGA 59.185 50.000 6.13 0.00 0.00 5.54
1614 1657 1.908065 TGACTGATACACACATCGCG 58.092 50.000 0.00 0.00 0.00 5.87
1631 1674 2.172505 AGGCCACGTCATCCAATTATGA 59.827 45.455 5.01 0.00 33.48 2.15
1632 1675 2.575532 AGGCCACGTCATCCAATTATG 58.424 47.619 5.01 0.00 0.00 1.90
1634 1677 2.290641 ACAAGGCCACGTCATCCAATTA 60.291 45.455 5.01 0.00 0.00 1.40
1645 1688 0.457851 TCCAAAAACACAAGGCCACG 59.542 50.000 5.01 0.00 0.00 4.94
1651 1694 7.063780 GCATATCCTCAAATCCAAAAACACAAG 59.936 37.037 0.00 0.00 0.00 3.16
1654 1697 5.812127 GGCATATCCTCAAATCCAAAAACAC 59.188 40.000 0.00 0.00 0.00 3.32
1673 1716 0.991146 TCCAACTCAGGCAAGGCATA 59.009 50.000 0.00 0.00 0.00 3.14
1731 1779 4.035208 CACCTACTATGAACCGAAAATGGC 59.965 45.833 0.00 0.00 0.00 4.40
1755 1803 5.599999 TTATCCTTCTCCAGCTCAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
1774 1822 6.820656 GCAGACCGATGATAATCCTCATTTAT 59.179 38.462 0.00 0.00 36.01 1.40
1939 1988 5.509498 TGCCCTCTATTTCAGCATACTTTT 58.491 37.500 0.00 0.00 0.00 2.27
1946 1995 3.742327 CGAATCTGCCCTCTATTTCAGCA 60.742 47.826 0.00 0.00 0.00 4.41
2177 2226 3.876309 ACCTTCTTGGCAGGAAAGTAA 57.124 42.857 11.43 0.00 40.22 2.24
2242 2291 5.954296 ACTCAAAATCTCACCAAGACATG 57.046 39.130 0.00 0.00 36.65 3.21
2246 2295 7.009179 AGACATACTCAAAATCTCACCAAGA 57.991 36.000 0.00 0.00 38.72 3.02
2265 2315 8.757982 AAATATTGATAAGCAAGGTGAGACAT 57.242 30.769 0.00 0.00 40.42 3.06
2268 2318 8.806429 TGAAAATATTGATAAGCAAGGTGAGA 57.194 30.769 0.00 0.00 40.42 3.27
2317 2367 2.040412 AGGGTTAGCTCCTTTCAGTTGG 59.960 50.000 0.00 0.00 0.00 3.77
2429 2485 5.209659 GAGGGAGTATTTGGGAAGTCTAGA 58.790 45.833 0.00 0.00 0.00 2.43
2443 2499 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
2448 2504 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2449 2505 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2450 2506 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2451 2507 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2473 2529 8.505625 ACTGTAAGACGTTTTTAGTGTCAAAAA 58.494 29.630 0.00 0.00 37.43 1.94
2474 2530 8.031848 ACTGTAAGACGTTTTTAGTGTCAAAA 57.968 30.769 0.00 0.00 37.43 2.44
2475 2531 7.599630 ACTGTAAGACGTTTTTAGTGTCAAA 57.400 32.000 0.00 0.00 37.43 2.69
2476 2532 8.876275 ATACTGTAAGACGTTTTTAGTGTCAA 57.124 30.769 14.59 1.04 37.43 3.18
2477 2533 8.757789 CAATACTGTAAGACGTTTTTAGTGTCA 58.242 33.333 14.59 1.30 37.43 3.58
2478 2534 8.219105 CCAATACTGTAAGACGTTTTTAGTGTC 58.781 37.037 14.59 0.00 37.43 3.67
2479 2535 7.927629 TCCAATACTGTAAGACGTTTTTAGTGT 59.072 33.333 14.59 8.26 37.43 3.55
2480 2536 8.219105 GTCCAATACTGTAAGACGTTTTTAGTG 58.781 37.037 14.59 4.50 37.43 2.74
2481 2537 7.115378 CGTCCAATACTGTAAGACGTTTTTAGT 59.885 37.037 20.77 5.31 43.89 2.24
2482 2538 7.411157 CCGTCCAATACTGTAAGACGTTTTTAG 60.411 40.741 24.09 12.47 46.62 1.85
2483 2539 6.365789 CCGTCCAATACTGTAAGACGTTTTTA 59.634 38.462 24.09 0.00 46.62 1.52
2484 2540 5.178067 CCGTCCAATACTGTAAGACGTTTTT 59.822 40.000 24.09 0.00 46.62 1.94
2485 2541 4.687483 CCGTCCAATACTGTAAGACGTTTT 59.313 41.667 24.09 0.00 46.62 2.43
2486 2542 4.022068 TCCGTCCAATACTGTAAGACGTTT 60.022 41.667 24.09 1.87 46.62 3.60
2487 2543 3.507233 TCCGTCCAATACTGTAAGACGTT 59.493 43.478 24.09 2.44 46.62 3.99
2488 2544 3.084039 TCCGTCCAATACTGTAAGACGT 58.916 45.455 24.09 0.00 46.62 4.34
2490 2546 3.181478 CCCTCCGTCCAATACTGTAAGAC 60.181 52.174 0.00 0.00 37.43 3.01
2491 2547 3.028850 CCCTCCGTCCAATACTGTAAGA 58.971 50.000 0.00 0.00 37.43 2.10
2492 2548 3.028850 TCCCTCCGTCCAATACTGTAAG 58.971 50.000 0.00 0.00 42.29 2.34
2493 2549 3.028850 CTCCCTCCGTCCAATACTGTAA 58.971 50.000 0.00 0.00 0.00 2.41
2494 2550 2.024655 ACTCCCTCCGTCCAATACTGTA 60.025 50.000 0.00 0.00 0.00 2.74
2495 2551 1.273098 ACTCCCTCCGTCCAATACTGT 60.273 52.381 0.00 0.00 0.00 3.55
2496 2552 1.486211 ACTCCCTCCGTCCAATACTG 58.514 55.000 0.00 0.00 0.00 2.74
2497 2553 3.614568 ATACTCCCTCCGTCCAATACT 57.385 47.619 0.00 0.00 0.00 2.12
2498 2554 4.096081 CGATATACTCCCTCCGTCCAATAC 59.904 50.000 0.00 0.00 0.00 1.89
2499 2555 4.263639 ACGATATACTCCCTCCGTCCAATA 60.264 45.833 0.00 0.00 0.00 1.90
2500 2556 3.090037 CGATATACTCCCTCCGTCCAAT 58.910 50.000 0.00 0.00 0.00 3.16
2501 2557 2.158564 ACGATATACTCCCTCCGTCCAA 60.159 50.000 0.00 0.00 0.00 3.53
2502 2558 1.422781 ACGATATACTCCCTCCGTCCA 59.577 52.381 0.00 0.00 0.00 4.02
2503 2559 2.197283 ACGATATACTCCCTCCGTCC 57.803 55.000 0.00 0.00 0.00 4.79
2504 2560 3.188873 CAGAACGATATACTCCCTCCGTC 59.811 52.174 0.00 0.00 0.00 4.79
2505 2561 3.147629 CAGAACGATATACTCCCTCCGT 58.852 50.000 0.00 0.00 0.00 4.69
2506 2562 3.058155 CACAGAACGATATACTCCCTCCG 60.058 52.174 0.00 0.00 0.00 4.63
2507 2563 3.256136 CCACAGAACGATATACTCCCTCC 59.744 52.174 0.00 0.00 0.00 4.30
2508 2564 3.305471 GCCACAGAACGATATACTCCCTC 60.305 52.174 0.00 0.00 0.00 4.30
2509 2565 2.628657 GCCACAGAACGATATACTCCCT 59.371 50.000 0.00 0.00 0.00 4.20
2510 2566 2.628657 AGCCACAGAACGATATACTCCC 59.371 50.000 0.00 0.00 0.00 4.30
2511 2567 3.553096 CCAGCCACAGAACGATATACTCC 60.553 52.174 0.00 0.00 0.00 3.85
2512 2568 3.318275 TCCAGCCACAGAACGATATACTC 59.682 47.826 0.00 0.00 0.00 2.59
2513 2569 3.068307 GTCCAGCCACAGAACGATATACT 59.932 47.826 0.00 0.00 0.00 2.12
2514 2570 3.381949 GTCCAGCCACAGAACGATATAC 58.618 50.000 0.00 0.00 0.00 1.47
2515 2571 2.364324 GGTCCAGCCACAGAACGATATA 59.636 50.000 0.00 0.00 37.17 0.86
2521 2577 0.954452 CAAAGGTCCAGCCACAGAAC 59.046 55.000 0.00 0.00 40.61 3.01
2527 2583 2.032528 CTCGCAAAGGTCCAGCCA 59.967 61.111 0.00 0.00 40.61 4.75
2534 2590 6.183360 TGTTGAATCTTTTAACTCGCAAAGGT 60.183 34.615 0.00 0.00 31.86 3.50
2536 2592 7.379529 ACATGTTGAATCTTTTAACTCGCAAAG 59.620 33.333 0.00 0.00 0.00 2.77
2776 2841 8.752005 AATATGAAGCTGCCAAAAGATAAGTA 57.248 30.769 0.00 0.00 0.00 2.24
3201 3334 2.544685 CTATCCTTTGAGCCAGTCACG 58.455 52.381 0.00 0.00 33.71 4.35
3250 3383 5.659440 AGTCTTCAAAAAGGAAAACTGCA 57.341 34.783 0.00 0.00 33.03 4.41
3265 3398 7.254227 ACAGCGTAAATAAAACAAGTCTTCA 57.746 32.000 0.00 0.00 0.00 3.02
3266 3399 9.821662 ATTACAGCGTAAATAAAACAAGTCTTC 57.178 29.630 5.48 0.00 0.00 2.87
3602 3739 1.399714 TTCACAGAGACGGTGTCACT 58.600 50.000 8.09 0.00 37.52 3.41
3604 3741 2.971660 TTTTCACAGAGACGGTGTCA 57.028 45.000 8.09 0.00 37.52 3.58
3697 3834 5.885912 ACGCATATAGGAACCAAGAATTTGT 59.114 36.000 0.00 0.00 32.21 2.83
3841 3982 9.667107 TCATACTACTTGGACTGGAATAAAAAG 57.333 33.333 0.00 0.00 0.00 2.27
3879 4020 5.353111 ACCAGAACCAAACCATTTTTAACG 58.647 37.500 0.00 0.00 0.00 3.18
3901 4042 8.590719 AAGTCAAGAGTAGCTTACAACTTAAC 57.409 34.615 0.00 0.00 34.21 2.01
3903 4044 9.609346 AAAAAGTCAAGAGTAGCTTACAACTTA 57.391 29.630 0.00 0.00 34.56 2.24
3953 4094 5.047377 GGCCCATTTTCAAGTGAATAACTCA 60.047 40.000 0.00 0.00 38.56 3.41
3954 4095 5.185828 AGGCCCATTTTCAAGTGAATAACTC 59.814 40.000 0.00 0.00 38.56 3.01
4070 4211 1.771854 TGCTGAACCCTGGAGTACAAA 59.228 47.619 0.00 0.00 0.00 2.83
4216 4357 3.511540 TCTCTCGGCATACCATATTCCAG 59.488 47.826 0.00 0.00 34.57 3.86
4296 4437 3.360249 AGCACAAAAACAGCAGATGAC 57.640 42.857 0.00 0.00 0.00 3.06
4378 4519 4.031028 CAGTTTGCAAGAGACAAAACTCG 58.969 43.478 0.00 0.00 38.64 4.18
4379 4520 5.235305 TCAGTTTGCAAGAGACAAAACTC 57.765 39.130 0.00 0.00 38.64 3.01
4434 4575 6.288294 TGGACAAATATACTGTATGGACTGC 58.712 40.000 10.51 0.00 0.00 4.40
4528 4669 7.287061 TCCCACAAAACTAGAAGAAAGATTGA 58.713 34.615 0.00 0.00 0.00 2.57
4686 4827 6.925165 AGCTAATTTGAATGTGTTTCCAACAG 59.075 34.615 0.00 0.00 43.10 3.16
4737 4878 5.013599 AGAGAACTGGAAAATAGGAGCTGTT 59.986 40.000 0.00 0.00 0.00 3.16
4940 5081 5.064441 ACAGCAGGAGCAAAATCATTAAC 57.936 39.130 0.00 0.00 45.49 2.01
5013 5154 7.061566 AGTATGCAAAAGGTAAACCACAAAT 57.938 32.000 1.26 0.00 38.89 2.32
5021 5162 4.770010 CCCCAGAAGTATGCAAAAGGTAAA 59.230 41.667 0.00 0.00 0.00 2.01
5027 5168 2.300956 TGCCCCAGAAGTATGCAAAA 57.699 45.000 0.00 0.00 0.00 2.44
5044 5185 4.430137 TTCTGTTGAGCATCTCATTTGC 57.570 40.909 0.00 0.00 40.39 3.68
5066 5208 4.634004 CGCATAAAACCTACATCCAGTGAA 59.366 41.667 0.00 0.00 0.00 3.18
5091 5233 1.075374 CTGTCCCCTTTCCACCAATCA 59.925 52.381 0.00 0.00 0.00 2.57
5106 5248 1.359848 CACCACTTATCACGCTGTCC 58.640 55.000 0.00 0.00 0.00 4.02
5190 5333 4.460263 ACCTTGATAGCACAAGAACAACA 58.540 39.130 16.09 0.00 46.85 3.33
5191 5334 5.438761 AACCTTGATAGCACAAGAACAAC 57.561 39.130 16.09 0.00 46.85 3.32
5192 5335 6.463995 AAAACCTTGATAGCACAAGAACAA 57.536 33.333 16.09 0.00 46.85 2.83
5363 5529 2.629336 TGGTTTGGTTTTTGGGATGC 57.371 45.000 0.00 0.00 0.00 3.91
5613 5783 3.011949 GCCGAAGCAAAAACAATCTGA 57.988 42.857 0.00 0.00 39.53 3.27
5668 5838 4.187594 CACAAGCAAGTGTATATCAGCG 57.812 45.455 0.81 0.00 34.83 5.18
5759 5960 3.490759 GGACACCGTGCAGATGCG 61.491 66.667 0.00 0.00 45.83 4.73
5860 6063 1.626825 GTTTGGCCACCTACCTGTCTA 59.373 52.381 3.88 0.00 0.00 2.59
5866 6069 1.339929 CAACAAGTTTGGCCACCTACC 59.660 52.381 3.88 0.00 0.00 3.18
5871 6074 1.665169 CTTTGCAACAAGTTTGGCCAC 59.335 47.619 3.88 0.00 0.00 5.01
5874 6077 0.301388 CGCTTTGCAACAAGTTTGGC 59.699 50.000 0.00 0.00 0.00 4.52
5895 6098 2.357881 CAGCTTGCGCAGAGTCCA 60.358 61.111 11.31 0.00 39.10 4.02
5916 6121 3.733337 CTTGCTACTTATAGGGTGCAGG 58.267 50.000 0.00 2.85 0.00 4.85
5920 6125 3.134458 GCTGCTTGCTACTTATAGGGTG 58.866 50.000 0.00 0.00 38.95 4.61
6036 6258 1.068434 GAGAAGAAGCCCGATGAGGAG 59.932 57.143 0.00 0.00 45.00 3.69
6042 6264 2.093764 CACAAGAGAGAAGAAGCCCGAT 60.094 50.000 0.00 0.00 0.00 4.18
6077 6299 2.578163 CTTCCAGGATTCTCGCCGCA 62.578 60.000 0.00 0.00 0.00 5.69
6146 6368 1.636148 ACGGTGGCAGTTCTACCTTA 58.364 50.000 0.00 0.00 43.52 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.