Multiple sequence alignment - TraesCS2D01G185700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G185700 chr2D 100.000 2477 0 0 1 2477 130840397 130837921 0.000000e+00 4575
1 TraesCS2D01G185700 chr2D 95.304 1597 61 4 371 1957 16904756 16906348 0.000000e+00 2521
2 TraesCS2D01G185700 chr2D 95.391 1584 55 7 374 1957 142523013 142521448 0.000000e+00 2505
3 TraesCS2D01G185700 chr2D 98.936 94 1 0 172 265 130838440 130838347 4.240000e-38 169
4 TraesCS2D01G185700 chr2D 98.936 94 1 0 1958 2051 130840226 130840133 4.240000e-38 169
5 TraesCS2D01G185700 chr6D 95.758 1603 48 9 371 1957 31859422 31861020 0.000000e+00 2566
6 TraesCS2D01G185700 chr6D 95.447 1274 43 3 374 1637 147106111 147104843 0.000000e+00 2017
7 TraesCS2D01G185700 chr5D 95.862 1595 51 6 374 1957 365120077 365118487 0.000000e+00 2566
8 TraesCS2D01G185700 chr5D 95.304 1597 54 10 374 1959 12933117 12931531 0.000000e+00 2514
9 TraesCS2D01G185700 chr5D 94.566 1601 60 12 371 1959 454209624 454211209 0.000000e+00 2449
10 TraesCS2D01G185700 chr5D 97.436 117 3 0 266 382 360780998 360780882 1.500000e-47 200
11 TraesCS2D01G185700 chr1D 95.715 1587 59 5 371 1956 464935775 464937353 0.000000e+00 2545
12 TraesCS2D01G185700 chr1D 95.310 1599 58 6 371 1957 471281262 471282855 0.000000e+00 2521
13 TraesCS2D01G185700 chr1D 95.027 1508 58 7 374 1870 470557065 470555564 0.000000e+00 2353
14 TraesCS2D01G185700 chr7D 95.295 1594 58 7 374 1957 384052554 384050968 0.000000e+00 2512
15 TraesCS2D01G185700 chr7D 94.336 512 18 2 371 872 602785783 602786293 0.000000e+00 774
16 TraesCS2D01G185700 chr7D 95.968 124 3 2 259 382 37279548 37279669 1.500000e-47 200
17 TraesCS2D01G185700 chr7D 95.312 128 3 3 255 382 384053263 384053139 1.500000e-47 200
18 TraesCS2D01G185700 chr7D 97.436 117 3 0 266 382 402671999 402671883 1.500000e-47 200
19 TraesCS2D01G185700 chr7D 97.436 117 3 0 266 382 460640116 460640000 1.500000e-47 200
20 TraesCS2D01G185700 chr7D 95.968 124 3 2 259 382 464034914 464035035 1.500000e-47 200
21 TraesCS2D01G185700 chr3A 93.253 1586 97 9 374 1957 658727655 658726078 0.000000e+00 2327
22 TraesCS2D01G185700 chr1A 91.606 1108 53 10 366 1461 331281056 331282135 0.000000e+00 1495
23 TraesCS2D01G185700 chr2B 88.051 544 37 9 1958 2477 184383824 184383285 9.730000e-174 619
24 TraesCS2D01G185700 chr2B 96.759 216 7 0 49 264 184383947 184383732 6.510000e-96 361
25 TraesCS2D01G185700 chr4D 94.301 193 10 1 374 566 22550056 22549865 6.700000e-76 294
26 TraesCS2D01G185700 chr4D 97.436 117 3 0 266 382 92080585 92080469 1.500000e-47 200
27 TraesCS2D01G185700 chr4D 97.436 117 3 0 266 382 155650001 155649885 1.500000e-47 200
28 TraesCS2D01G185700 chr4D 97.436 117 3 0 266 382 488740810 488740694 1.500000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G185700 chr2D 130837921 130840397 2476 True 1637.666667 4575 99.290667 1 2477 3 chr2D.!!$R2 2476
1 TraesCS2D01G185700 chr2D 16904756 16906348 1592 False 2521.000000 2521 95.304000 371 1957 1 chr2D.!!$F1 1586
2 TraesCS2D01G185700 chr2D 142521448 142523013 1565 True 2505.000000 2505 95.391000 374 1957 1 chr2D.!!$R1 1583
3 TraesCS2D01G185700 chr6D 31859422 31861020 1598 False 2566.000000 2566 95.758000 371 1957 1 chr6D.!!$F1 1586
4 TraesCS2D01G185700 chr6D 147104843 147106111 1268 True 2017.000000 2017 95.447000 374 1637 1 chr6D.!!$R1 1263
5 TraesCS2D01G185700 chr5D 365118487 365120077 1590 True 2566.000000 2566 95.862000 374 1957 1 chr5D.!!$R3 1583
6 TraesCS2D01G185700 chr5D 12931531 12933117 1586 True 2514.000000 2514 95.304000 374 1959 1 chr5D.!!$R1 1585
7 TraesCS2D01G185700 chr5D 454209624 454211209 1585 False 2449.000000 2449 94.566000 371 1959 1 chr5D.!!$F1 1588
8 TraesCS2D01G185700 chr1D 464935775 464937353 1578 False 2545.000000 2545 95.715000 371 1956 1 chr1D.!!$F1 1585
9 TraesCS2D01G185700 chr1D 471281262 471282855 1593 False 2521.000000 2521 95.310000 371 1957 1 chr1D.!!$F2 1586
10 TraesCS2D01G185700 chr1D 470555564 470557065 1501 True 2353.000000 2353 95.027000 374 1870 1 chr1D.!!$R1 1496
11 TraesCS2D01G185700 chr7D 384050968 384053263 2295 True 1356.000000 2512 95.303500 255 1957 2 chr7D.!!$R3 1702
12 TraesCS2D01G185700 chr7D 602785783 602786293 510 False 774.000000 774 94.336000 371 872 1 chr7D.!!$F3 501
13 TraesCS2D01G185700 chr3A 658726078 658727655 1577 True 2327.000000 2327 93.253000 374 1957 1 chr3A.!!$R1 1583
14 TraesCS2D01G185700 chr1A 331281056 331282135 1079 False 1495.000000 1495 91.606000 366 1461 1 chr1A.!!$F1 1095
15 TraesCS2D01G185700 chr2B 184383285 184383947 662 True 490.000000 619 92.405000 49 2477 2 chr2B.!!$R1 2428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 1092 0.471022 GCCTTTTCCCTGTTTCCCCA 60.471 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 3212 0.313987 TCTGACGATGCACGACACTT 59.686 50.0 14.18 0.0 45.77 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.124808 TGTGTTGTACATAGTATGTCTTACCA 57.875 34.615 19.01 8.39 43.67 3.25
29 30 8.030692 TGTGTTGTACATAGTATGTCTTACCAC 58.969 37.037 19.01 18.01 43.67 4.16
30 31 7.219535 GTGTTGTACATAGTATGTCTTACCACG 59.780 40.741 19.01 0.00 43.67 4.94
31 32 6.381481 TGTACATAGTATGTCTTACCACGG 57.619 41.667 19.01 0.00 43.67 4.94
32 33 6.121590 TGTACATAGTATGTCTTACCACGGA 58.878 40.000 19.01 0.00 43.67 4.69
33 34 6.602803 TGTACATAGTATGTCTTACCACGGAA 59.397 38.462 19.01 0.00 43.67 4.30
34 35 5.899299 ACATAGTATGTCTTACCACGGAAC 58.101 41.667 10.10 0.00 39.92 3.62
35 36 3.881937 AGTATGTCTTACCACGGAACC 57.118 47.619 0.00 0.00 0.00 3.62
36 37 3.167485 AGTATGTCTTACCACGGAACCA 58.833 45.455 0.00 0.00 0.00 3.67
37 38 2.467566 ATGTCTTACCACGGAACCAC 57.532 50.000 0.00 0.00 0.00 4.16
38 39 1.121378 TGTCTTACCACGGAACCACA 58.879 50.000 0.00 0.00 0.00 4.17
39 40 1.485480 TGTCTTACCACGGAACCACAA 59.515 47.619 0.00 0.00 0.00 3.33
40 41 1.869132 GTCTTACCACGGAACCACAAC 59.131 52.381 0.00 0.00 0.00 3.32
41 42 1.764134 TCTTACCACGGAACCACAACT 59.236 47.619 0.00 0.00 0.00 3.16
42 43 2.964464 TCTTACCACGGAACCACAACTA 59.036 45.455 0.00 0.00 0.00 2.24
43 44 3.387374 TCTTACCACGGAACCACAACTAA 59.613 43.478 0.00 0.00 0.00 2.24
44 45 1.957668 ACCACGGAACCACAACTAAC 58.042 50.000 0.00 0.00 0.00 2.34
45 46 1.209990 ACCACGGAACCACAACTAACA 59.790 47.619 0.00 0.00 0.00 2.41
46 47 2.290464 CCACGGAACCACAACTAACAA 58.710 47.619 0.00 0.00 0.00 2.83
47 48 2.289547 CCACGGAACCACAACTAACAAG 59.710 50.000 0.00 0.00 0.00 3.16
52 53 4.992319 CGGAACCACAACTAACAAGACATA 59.008 41.667 0.00 0.00 0.00 2.29
66 67 3.813529 AGACATACACGCAAGAAAAGC 57.186 42.857 0.00 0.00 43.62 3.51
102 103 3.904717 ACCATGGAACCACAACTTGTAA 58.095 40.909 21.47 0.00 0.00 2.41
132 133 9.404848 CTATTGCAATGGAACCATCAGATATAT 57.595 33.333 22.27 0.00 35.31 0.86
367 368 1.145945 TCTCTCACACACACCCTCTCT 59.854 52.381 0.00 0.00 0.00 3.10
372 966 0.543174 ACACACACCCTCTCTCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
393 987 0.895559 CTTCCTCAACCTTGGGCCAC 60.896 60.000 5.23 0.00 0.00 5.01
498 1092 0.471022 GCCTTTTCCCTGTTTCCCCA 60.471 55.000 0.00 0.00 0.00 4.96
644 1248 4.803426 CGCTCTTCTTCCGCGCCT 62.803 66.667 0.00 0.00 40.42 5.52
1065 1671 3.947612 ATGGAGTACGAGAAGGAGGTA 57.052 47.619 0.00 0.00 0.00 3.08
1135 1741 0.958382 TGGTGGAGGTGTTTATGCGC 60.958 55.000 0.00 0.00 0.00 6.09
1258 1864 4.166144 GGAGGGGTGATTTCCTTCAATAGA 59.834 45.833 0.00 0.00 32.71 1.98
1431 2273 8.328146 GGAAAGTTTGCAAATGTTAAGAAACTC 58.672 33.333 16.21 5.05 33.60 3.01
1845 2796 1.555533 GGTGGGAGGAGAGACGAAAAT 59.444 52.381 0.00 0.00 0.00 1.82
1901 2852 1.229529 GGGTGGTGGGAGGAGAGAA 60.230 63.158 0.00 0.00 0.00 2.87
1959 2974 4.819105 TCACCAACTCGTCCATTAGAAT 57.181 40.909 0.00 0.00 0.00 2.40
1960 2975 5.925506 TCACCAACTCGTCCATTAGAATA 57.074 39.130 0.00 0.00 0.00 1.75
1961 2976 6.288941 TCACCAACTCGTCCATTAGAATAA 57.711 37.500 0.00 0.00 0.00 1.40
1962 2977 6.884832 TCACCAACTCGTCCATTAGAATAAT 58.115 36.000 0.00 0.00 0.00 1.28
1963 2978 6.761242 TCACCAACTCGTCCATTAGAATAATG 59.239 38.462 3.08 3.08 0.00 1.90
1964 2979 6.017934 CACCAACTCGTCCATTAGAATAATGG 60.018 42.308 18.50 18.50 46.59 3.16
1977 2992 9.288576 CATTAGAATAATGGAAGAATAGTGCCA 57.711 33.333 2.24 0.00 34.45 4.92
1978 2993 8.908786 TTAGAATAATGGAAGAATAGTGCCAG 57.091 34.615 0.00 0.00 33.26 4.85
1979 2994 6.904626 AGAATAATGGAAGAATAGTGCCAGT 58.095 36.000 0.00 0.00 33.26 4.00
1980 2995 7.349598 AGAATAATGGAAGAATAGTGCCAGTT 58.650 34.615 0.00 0.00 33.26 3.16
1981 2996 7.836183 AGAATAATGGAAGAATAGTGCCAGTTT 59.164 33.333 0.00 0.00 33.26 2.66
1982 2997 7.961326 ATAATGGAAGAATAGTGCCAGTTTT 57.039 32.000 0.00 0.00 33.26 2.43
1983 2998 6.670695 AATGGAAGAATAGTGCCAGTTTTT 57.329 33.333 0.00 0.00 33.26 1.94
1984 2999 7.775053 AATGGAAGAATAGTGCCAGTTTTTA 57.225 32.000 0.00 0.00 33.26 1.52
1985 3000 6.817765 TGGAAGAATAGTGCCAGTTTTTAG 57.182 37.500 0.00 0.00 0.00 1.85
1986 3001 6.303839 TGGAAGAATAGTGCCAGTTTTTAGT 58.696 36.000 0.00 0.00 0.00 2.24
1987 3002 6.775629 TGGAAGAATAGTGCCAGTTTTTAGTT 59.224 34.615 0.00 0.00 0.00 2.24
1988 3003 7.084486 GGAAGAATAGTGCCAGTTTTTAGTTG 58.916 38.462 0.00 0.00 0.00 3.16
1989 3004 7.040686 GGAAGAATAGTGCCAGTTTTTAGTTGA 60.041 37.037 0.00 0.00 0.00 3.18
1990 3005 7.817418 AGAATAGTGCCAGTTTTTAGTTGAA 57.183 32.000 0.00 0.00 0.00 2.69
1991 3006 8.232913 AGAATAGTGCCAGTTTTTAGTTGAAA 57.767 30.769 0.00 0.00 0.00 2.69
1992 3007 8.860088 AGAATAGTGCCAGTTTTTAGTTGAAAT 58.140 29.630 0.00 0.00 0.00 2.17
1993 3008 9.476202 GAATAGTGCCAGTTTTTAGTTGAAATT 57.524 29.630 0.00 0.00 0.00 1.82
1994 3009 9.830975 AATAGTGCCAGTTTTTAGTTGAAATTT 57.169 25.926 0.00 0.00 0.00 1.82
1995 3010 7.770801 AGTGCCAGTTTTTAGTTGAAATTTC 57.229 32.000 11.41 11.41 0.00 2.17
1996 3011 7.327214 AGTGCCAGTTTTTAGTTGAAATTTCA 58.673 30.769 16.91 16.91 34.92 2.69
1997 3012 7.821846 AGTGCCAGTTTTTAGTTGAAATTTCAA 59.178 29.630 26.01 26.01 44.31 2.69
2009 3024 5.418310 TGAAATTTCAACGAGGACTTGAC 57.582 39.130 18.45 0.00 33.55 3.18
2010 3025 4.274950 TGAAATTTCAACGAGGACTTGACC 59.725 41.667 18.45 0.00 33.55 4.02
2011 3026 2.249844 TTTCAACGAGGACTTGACCC 57.750 50.000 0.00 0.00 0.00 4.46
2012 3027 1.420430 TTCAACGAGGACTTGACCCT 58.580 50.000 0.00 0.00 36.57 4.34
2013 3028 0.966920 TCAACGAGGACTTGACCCTC 59.033 55.000 0.00 0.00 45.16 4.30
2017 3032 2.964343 GAGGACTTGACCCTCGACT 58.036 57.895 0.00 0.00 40.58 4.18
2018 3033 0.528470 GAGGACTTGACCCTCGACTG 59.472 60.000 0.00 0.00 40.58 3.51
2019 3034 0.900647 AGGACTTGACCCTCGACTGG 60.901 60.000 0.00 0.00 0.00 4.00
2031 3046 2.345991 GACTGGGTAGGCGTGCAA 59.654 61.111 0.00 0.00 0.00 4.08
2032 3047 2.032071 ACTGGGTAGGCGTGCAAC 59.968 61.111 0.00 0.00 0.00 4.17
2033 3048 2.746277 CTGGGTAGGCGTGCAACC 60.746 66.667 6.98 6.98 0.00 3.77
2034 3049 3.246112 TGGGTAGGCGTGCAACCT 61.246 61.111 13.72 13.72 41.57 3.50
2035 3050 2.033602 GGGTAGGCGTGCAACCTT 59.966 61.111 14.38 0.51 38.81 3.50
2036 3051 2.332654 GGGTAGGCGTGCAACCTTG 61.333 63.158 14.38 0.00 38.81 3.61
2054 3069 8.696410 CAACCTTGCTTTTTCTAACAAGTTAA 57.304 30.769 0.00 0.00 38.24 2.01
2055 3070 9.145865 CAACCTTGCTTTTTCTAACAAGTTAAA 57.854 29.630 0.00 0.00 38.24 1.52
2056 3071 8.697846 ACCTTGCTTTTTCTAACAAGTTAAAC 57.302 30.769 0.00 0.00 38.24 2.01
2057 3072 8.528643 ACCTTGCTTTTTCTAACAAGTTAAACT 58.471 29.630 0.00 0.00 38.24 2.66
2058 3073 9.020813 CCTTGCTTTTTCTAACAAGTTAAACTC 57.979 33.333 0.00 0.00 38.24 3.01
2059 3074 9.788960 CTTGCTTTTTCTAACAAGTTAAACTCT 57.211 29.630 0.00 0.00 35.81 3.24
2060 3075 9.567848 TTGCTTTTTCTAACAAGTTAAACTCTG 57.432 29.630 0.00 0.00 0.00 3.35
2061 3076 8.952278 TGCTTTTTCTAACAAGTTAAACTCTGA 58.048 29.630 0.00 0.00 0.00 3.27
2062 3077 9.439537 GCTTTTTCTAACAAGTTAAACTCTGAG 57.560 33.333 2.45 2.45 0.00 3.35
2066 3081 9.886132 TTTCTAACAAGTTAAACTCTGAGTTCT 57.114 29.630 22.24 12.96 37.47 3.01
2067 3082 9.530633 TTCTAACAAGTTAAACTCTGAGTTCTC 57.469 33.333 22.24 14.95 37.47 2.87
2068 3083 8.692710 TCTAACAAGTTAAACTCTGAGTTCTCA 58.307 33.333 22.24 9.03 37.47 3.27
2069 3084 9.314321 CTAACAAGTTAAACTCTGAGTTCTCAA 57.686 33.333 22.24 13.89 37.47 3.02
2070 3085 8.561738 AACAAGTTAAACTCTGAGTTCTCAAA 57.438 30.769 22.24 12.02 37.47 2.69
2071 3086 8.738645 ACAAGTTAAACTCTGAGTTCTCAAAT 57.261 30.769 22.24 13.19 37.47 2.32
2072 3087 9.178758 ACAAGTTAAACTCTGAGTTCTCAAATT 57.821 29.630 22.24 17.34 37.47 1.82
2102 3117 4.792528 AAAAACAAATTGTGTCGCCATG 57.207 36.364 0.00 0.00 40.60 3.66
2103 3118 3.451141 AAACAAATTGTGTCGCCATGT 57.549 38.095 0.00 0.00 40.60 3.21
2104 3119 3.451141 AACAAATTGTGTCGCCATGTT 57.549 38.095 0.00 0.00 40.60 2.71
2105 3120 2.741612 ACAAATTGTGTCGCCATGTTG 58.258 42.857 0.00 0.00 34.38 3.33
2106 3121 2.360483 ACAAATTGTGTCGCCATGTTGA 59.640 40.909 0.00 0.00 34.38 3.18
2107 3122 3.181482 ACAAATTGTGTCGCCATGTTGAA 60.181 39.130 0.00 0.00 34.38 2.69
2108 3123 3.724508 AATTGTGTCGCCATGTTGAAA 57.275 38.095 0.00 0.00 0.00 2.69
2109 3124 3.940209 ATTGTGTCGCCATGTTGAAAT 57.060 38.095 0.00 0.00 0.00 2.17
2110 3125 3.724508 TTGTGTCGCCATGTTGAAATT 57.275 38.095 0.00 0.00 0.00 1.82
2111 3126 4.837896 TTGTGTCGCCATGTTGAAATTA 57.162 36.364 0.00 0.00 0.00 1.40
2112 3127 4.837896 TGTGTCGCCATGTTGAAATTAA 57.162 36.364 0.00 0.00 0.00 1.40
2113 3128 5.188327 TGTGTCGCCATGTTGAAATTAAA 57.812 34.783 0.00 0.00 0.00 1.52
2114 3129 5.777802 TGTGTCGCCATGTTGAAATTAAAT 58.222 33.333 0.00 0.00 0.00 1.40
2115 3130 6.219473 TGTGTCGCCATGTTGAAATTAAATT 58.781 32.000 0.00 0.00 0.00 1.82
2116 3131 6.145209 TGTGTCGCCATGTTGAAATTAAATTG 59.855 34.615 0.00 0.00 0.00 2.32
2117 3132 6.145371 GTGTCGCCATGTTGAAATTAAATTGT 59.855 34.615 0.00 0.00 0.00 2.71
2118 3133 6.703607 TGTCGCCATGTTGAAATTAAATTGTT 59.296 30.769 0.00 0.00 0.00 2.83
2119 3134 7.008859 GTCGCCATGTTGAAATTAAATTGTTG 58.991 34.615 0.00 0.00 0.00 3.33
2120 3135 6.925718 TCGCCATGTTGAAATTAAATTGTTGA 59.074 30.769 0.00 0.00 0.00 3.18
2121 3136 7.439356 TCGCCATGTTGAAATTAAATTGTTGAA 59.561 29.630 0.00 0.00 0.00 2.69
2122 3137 7.741216 CGCCATGTTGAAATTAAATTGTTGAAG 59.259 33.333 0.00 0.00 0.00 3.02
2123 3138 8.016801 GCCATGTTGAAATTAAATTGTTGAAGG 58.983 33.333 0.00 0.00 0.00 3.46
2124 3139 9.054922 CCATGTTGAAATTAAATTGTTGAAGGT 57.945 29.630 0.00 0.00 0.00 3.50
2127 3142 9.883142 TGTTGAAATTAAATTGTTGAAGGTCTT 57.117 25.926 0.00 0.00 0.00 3.01
2135 3150 7.832503 AAATTGTTGAAGGTCTTTCTTTGTG 57.167 32.000 0.00 0.00 36.71 3.33
2136 3151 4.981806 TGTTGAAGGTCTTTCTTTGTGG 57.018 40.909 0.00 0.00 36.71 4.17
2137 3152 3.699038 TGTTGAAGGTCTTTCTTTGTGGG 59.301 43.478 0.00 0.00 36.71 4.61
2138 3153 3.943671 TGAAGGTCTTTCTTTGTGGGA 57.056 42.857 0.00 0.00 36.71 4.37
2139 3154 4.243793 TGAAGGTCTTTCTTTGTGGGAA 57.756 40.909 0.00 0.00 36.71 3.97
2140 3155 4.605183 TGAAGGTCTTTCTTTGTGGGAAA 58.395 39.130 0.00 0.00 36.71 3.13
2141 3156 4.644685 TGAAGGTCTTTCTTTGTGGGAAAG 59.355 41.667 9.17 9.17 46.28 2.62
2152 3167 8.940768 TTCTTTGTGGGAAAGAAAATAAAGTG 57.059 30.769 7.05 0.00 41.64 3.16
2153 3168 8.299990 TCTTTGTGGGAAAGAAAATAAAGTGA 57.700 30.769 0.00 0.00 33.72 3.41
2154 3169 8.754080 TCTTTGTGGGAAAGAAAATAAAGTGAA 58.246 29.630 0.00 0.00 33.72 3.18
2155 3170 8.940768 TTTGTGGGAAAGAAAATAAAGTGAAG 57.059 30.769 0.00 0.00 0.00 3.02
2156 3171 7.654022 TGTGGGAAAGAAAATAAAGTGAAGT 57.346 32.000 0.00 0.00 0.00 3.01
2157 3172 8.073467 TGTGGGAAAGAAAATAAAGTGAAGTT 57.927 30.769 0.00 0.00 0.00 2.66
2158 3173 9.191479 TGTGGGAAAGAAAATAAAGTGAAGTTA 57.809 29.630 0.00 0.00 0.00 2.24
2159 3174 9.678941 GTGGGAAAGAAAATAAAGTGAAGTTAG 57.321 33.333 0.00 0.00 0.00 2.34
2160 3175 9.416284 TGGGAAAGAAAATAAAGTGAAGTTAGT 57.584 29.630 0.00 0.00 0.00 2.24
2161 3176 9.678941 GGGAAAGAAAATAAAGTGAAGTTAGTG 57.321 33.333 0.00 0.00 0.00 2.74
2166 3181 8.560374 AGAAAATAAAGTGAAGTTAGTGTCTGC 58.440 33.333 0.00 0.00 25.42 4.26
2167 3182 8.451908 AAAATAAAGTGAAGTTAGTGTCTGCT 57.548 30.769 0.00 0.00 0.00 4.24
2168 3183 8.451908 AAATAAAGTGAAGTTAGTGTCTGCTT 57.548 30.769 0.00 0.00 0.00 3.91
2169 3184 9.555727 AAATAAAGTGAAGTTAGTGTCTGCTTA 57.444 29.630 0.00 0.00 0.00 3.09
2170 3185 8.764524 ATAAAGTGAAGTTAGTGTCTGCTTAG 57.235 34.615 0.00 0.00 0.00 2.18
2171 3186 6.406692 AAGTGAAGTTAGTGTCTGCTTAGA 57.593 37.500 0.00 0.00 0.00 2.10
2172 3187 6.406692 AGTGAAGTTAGTGTCTGCTTAGAA 57.593 37.500 0.00 0.00 0.00 2.10
2173 3188 6.817184 AGTGAAGTTAGTGTCTGCTTAGAAA 58.183 36.000 0.00 0.00 0.00 2.52
2174 3189 7.445945 AGTGAAGTTAGTGTCTGCTTAGAAAT 58.554 34.615 0.00 0.00 0.00 2.17
2175 3190 8.585881 AGTGAAGTTAGTGTCTGCTTAGAAATA 58.414 33.333 0.00 0.00 0.00 1.40
2176 3191 9.372369 GTGAAGTTAGTGTCTGCTTAGAAATAT 57.628 33.333 0.00 0.00 0.00 1.28
2177 3192 9.371136 TGAAGTTAGTGTCTGCTTAGAAATATG 57.629 33.333 0.00 0.00 0.00 1.78
2178 3193 8.723942 AAGTTAGTGTCTGCTTAGAAATATGG 57.276 34.615 0.00 0.00 0.00 2.74
2179 3194 7.275920 AGTTAGTGTCTGCTTAGAAATATGGG 58.724 38.462 0.00 0.00 0.00 4.00
2180 3195 5.957771 AGTGTCTGCTTAGAAATATGGGA 57.042 39.130 0.00 0.00 0.00 4.37
2181 3196 6.313519 AGTGTCTGCTTAGAAATATGGGAA 57.686 37.500 0.00 0.00 0.00 3.97
2182 3197 6.721318 AGTGTCTGCTTAGAAATATGGGAAA 58.279 36.000 0.00 0.00 0.00 3.13
2183 3198 7.349598 AGTGTCTGCTTAGAAATATGGGAAAT 58.650 34.615 0.00 0.00 0.00 2.17
2184 3199 8.494433 AGTGTCTGCTTAGAAATATGGGAAATA 58.506 33.333 0.00 0.00 0.00 1.40
2185 3200 9.289782 GTGTCTGCTTAGAAATATGGGAAATAT 57.710 33.333 0.00 0.00 0.00 1.28
2186 3201 9.507329 TGTCTGCTTAGAAATATGGGAAATATC 57.493 33.333 0.00 0.00 0.00 1.63
2187 3202 9.507329 GTCTGCTTAGAAATATGGGAAATATCA 57.493 33.333 0.00 0.00 0.00 2.15
2188 3203 9.730705 TCTGCTTAGAAATATGGGAAATATCAG 57.269 33.333 0.00 0.00 0.00 2.90
2189 3204 9.512588 CTGCTTAGAAATATGGGAAATATCAGT 57.487 33.333 0.00 0.00 0.00 3.41
2190 3205 9.288576 TGCTTAGAAATATGGGAAATATCAGTG 57.711 33.333 0.00 0.00 0.00 3.66
2191 3206 9.289782 GCTTAGAAATATGGGAAATATCAGTGT 57.710 33.333 0.00 0.00 0.00 3.55
2195 3210 8.723365 AGAAATATGGGAAATATCAGTGTACCA 58.277 33.333 0.00 0.00 0.00 3.25
2196 3211 9.520515 GAAATATGGGAAATATCAGTGTACCAT 57.479 33.333 0.00 0.00 40.33 3.55
2200 3215 7.446106 TGGGAAATATCAGTGTACCATAAGT 57.554 36.000 0.00 0.00 0.00 2.24
2201 3216 7.279615 TGGGAAATATCAGTGTACCATAAGTG 58.720 38.462 0.00 0.00 0.00 3.16
2202 3217 7.092623 TGGGAAATATCAGTGTACCATAAGTGT 60.093 37.037 0.00 0.00 0.00 3.55
2203 3218 7.441458 GGGAAATATCAGTGTACCATAAGTGTC 59.559 40.741 0.00 0.00 0.00 3.67
2204 3219 7.169308 GGAAATATCAGTGTACCATAAGTGTCG 59.831 40.741 0.00 0.00 0.00 4.35
2205 3220 6.710597 ATATCAGTGTACCATAAGTGTCGT 57.289 37.500 0.00 0.00 0.00 4.34
2206 3221 4.168922 TCAGTGTACCATAAGTGTCGTG 57.831 45.455 0.00 0.00 0.00 4.35
2207 3222 2.666508 CAGTGTACCATAAGTGTCGTGC 59.333 50.000 0.00 0.00 0.00 5.34
2208 3223 2.297880 AGTGTACCATAAGTGTCGTGCA 59.702 45.455 0.00 0.00 0.00 4.57
2209 3224 3.056107 AGTGTACCATAAGTGTCGTGCAT 60.056 43.478 0.00 0.00 0.00 3.96
2210 3225 3.306166 GTGTACCATAAGTGTCGTGCATC 59.694 47.826 0.00 0.00 0.00 3.91
2211 3226 1.640428 ACCATAAGTGTCGTGCATCG 58.360 50.000 0.00 0.00 41.41 3.84
2212 3227 1.067142 ACCATAAGTGTCGTGCATCGT 60.067 47.619 8.22 0.00 40.80 3.73
2213 3228 1.588404 CCATAAGTGTCGTGCATCGTC 59.412 52.381 8.22 4.36 40.80 4.20
2214 3229 2.258755 CATAAGTGTCGTGCATCGTCA 58.741 47.619 8.22 6.57 40.80 4.35
2215 3230 1.977188 TAAGTGTCGTGCATCGTCAG 58.023 50.000 8.31 0.00 38.12 3.51
2216 3231 0.313987 AAGTGTCGTGCATCGTCAGA 59.686 50.000 8.31 0.00 38.12 3.27
2217 3232 0.313987 AGTGTCGTGCATCGTCAGAA 59.686 50.000 8.31 0.00 38.12 3.02
2218 3233 1.136690 GTGTCGTGCATCGTCAGAAA 58.863 50.000 8.31 0.00 38.12 2.52
2219 3234 1.726791 GTGTCGTGCATCGTCAGAAAT 59.273 47.619 8.31 0.00 38.12 2.17
2220 3235 1.726248 TGTCGTGCATCGTCAGAAATG 59.274 47.619 8.22 0.00 40.80 2.32
2221 3236 1.061131 GTCGTGCATCGTCAGAAATGG 59.939 52.381 8.22 0.00 40.80 3.16
2222 3237 1.067213 TCGTGCATCGTCAGAAATGGA 60.067 47.619 8.22 0.00 40.80 3.41
2223 3238 1.935873 CGTGCATCGTCAGAAATGGAT 59.064 47.619 0.00 0.00 34.52 3.41
2224 3239 2.352651 CGTGCATCGTCAGAAATGGATT 59.647 45.455 0.00 0.00 34.52 3.01
2225 3240 3.555547 CGTGCATCGTCAGAAATGGATTA 59.444 43.478 0.00 0.00 34.52 1.75
2226 3241 4.318333 CGTGCATCGTCAGAAATGGATTAG 60.318 45.833 0.00 0.00 34.52 1.73
2227 3242 4.811024 GTGCATCGTCAGAAATGGATTAGA 59.189 41.667 0.00 0.00 0.00 2.10
2228 3243 5.050499 GTGCATCGTCAGAAATGGATTAGAG 60.050 44.000 0.00 0.00 0.00 2.43
2229 3244 5.163416 TGCATCGTCAGAAATGGATTAGAGA 60.163 40.000 0.00 0.00 0.00 3.10
2230 3245 5.931146 GCATCGTCAGAAATGGATTAGAGAT 59.069 40.000 0.00 0.00 0.00 2.75
2231 3246 6.128607 GCATCGTCAGAAATGGATTAGAGATG 60.129 42.308 0.00 0.00 35.19 2.90
2232 3247 5.847304 TCGTCAGAAATGGATTAGAGATGG 58.153 41.667 0.00 0.00 0.00 3.51
2233 3248 5.363868 TCGTCAGAAATGGATTAGAGATGGT 59.636 40.000 0.00 0.00 0.00 3.55
2234 3249 5.694006 CGTCAGAAATGGATTAGAGATGGTC 59.306 44.000 0.00 0.00 0.00 4.02
2235 3250 6.586344 GTCAGAAATGGATTAGAGATGGTCA 58.414 40.000 0.00 0.00 0.00 4.02
2236 3251 6.705381 GTCAGAAATGGATTAGAGATGGTCAG 59.295 42.308 0.00 0.00 0.00 3.51
2237 3252 6.385176 TCAGAAATGGATTAGAGATGGTCAGT 59.615 38.462 0.00 0.00 0.00 3.41
2238 3253 7.565029 TCAGAAATGGATTAGAGATGGTCAGTA 59.435 37.037 0.00 0.00 0.00 2.74
2239 3254 8.206867 CAGAAATGGATTAGAGATGGTCAGTAA 58.793 37.037 0.00 0.00 0.00 2.24
2240 3255 8.943085 AGAAATGGATTAGAGATGGTCAGTAAT 58.057 33.333 0.00 0.00 0.00 1.89
2241 3256 8.915057 AAATGGATTAGAGATGGTCAGTAATG 57.085 34.615 0.00 0.00 0.00 1.90
2242 3257 6.425210 TGGATTAGAGATGGTCAGTAATGG 57.575 41.667 0.00 0.00 0.00 3.16
2243 3258 5.905331 TGGATTAGAGATGGTCAGTAATGGT 59.095 40.000 0.00 0.00 0.00 3.55
2244 3259 6.386927 TGGATTAGAGATGGTCAGTAATGGTT 59.613 38.462 0.00 0.00 0.00 3.67
2245 3260 6.931840 GGATTAGAGATGGTCAGTAATGGTTC 59.068 42.308 0.00 0.00 0.00 3.62
2246 3261 6.867519 TTAGAGATGGTCAGTAATGGTTCA 57.132 37.500 0.00 0.00 0.00 3.18
2247 3262 5.762179 AGAGATGGTCAGTAATGGTTCAA 57.238 39.130 0.00 0.00 0.00 2.69
2248 3263 6.126863 AGAGATGGTCAGTAATGGTTCAAA 57.873 37.500 0.00 0.00 0.00 2.69
2249 3264 6.542821 AGAGATGGTCAGTAATGGTTCAAAA 58.457 36.000 0.00 0.00 0.00 2.44
2250 3265 6.656693 AGAGATGGTCAGTAATGGTTCAAAAG 59.343 38.462 0.00 0.00 0.00 2.27
2251 3266 6.306987 AGATGGTCAGTAATGGTTCAAAAGT 58.693 36.000 0.00 0.00 0.00 2.66
2252 3267 6.431234 AGATGGTCAGTAATGGTTCAAAAGTC 59.569 38.462 0.00 0.00 0.00 3.01
2253 3268 5.441500 TGGTCAGTAATGGTTCAAAAGTCA 58.558 37.500 0.00 0.00 0.00 3.41
2254 3269 5.888724 TGGTCAGTAATGGTTCAAAAGTCAA 59.111 36.000 0.00 0.00 0.00 3.18
2255 3270 6.549364 TGGTCAGTAATGGTTCAAAAGTCAAT 59.451 34.615 0.00 0.00 0.00 2.57
2256 3271 7.069331 TGGTCAGTAATGGTTCAAAAGTCAATT 59.931 33.333 0.00 0.00 0.00 2.32
2257 3272 7.926018 GGTCAGTAATGGTTCAAAAGTCAATTT 59.074 33.333 0.00 0.00 0.00 1.82
2258 3273 9.313118 GTCAGTAATGGTTCAAAAGTCAATTTT 57.687 29.630 0.00 0.00 41.91 1.82
2259 3274 9.883142 TCAGTAATGGTTCAAAAGTCAATTTTT 57.117 25.926 0.00 0.00 39.11 1.94
2265 3280 9.625747 ATGGTTCAAAAGTCAATTTTTAATGGT 57.374 25.926 0.00 0.00 39.11 3.55
2266 3281 9.454859 TGGTTCAAAAGTCAATTTTTAATGGTT 57.545 25.926 0.00 0.00 39.11 3.67
2295 3310 9.651718 GAAAAATCACTTATATTTCTACGCAGG 57.348 33.333 0.00 0.00 0.00 4.85
2296 3311 8.958119 AAAATCACTTATATTTCTACGCAGGA 57.042 30.769 0.00 0.00 0.00 3.86
2297 3312 8.958119 AAATCACTTATATTTCTACGCAGGAA 57.042 30.769 0.00 0.00 0.00 3.36
2298 3313 8.594881 AATCACTTATATTTCTACGCAGGAAG 57.405 34.615 0.00 0.00 0.00 3.46
2299 3314 6.513180 TCACTTATATTTCTACGCAGGAAGG 58.487 40.000 0.00 0.00 0.00 3.46
2300 3315 5.177696 CACTTATATTTCTACGCAGGAAGGC 59.822 44.000 0.00 0.00 0.00 4.35
2301 3316 5.070580 ACTTATATTTCTACGCAGGAAGGCT 59.929 40.000 0.00 0.00 0.00 4.58
2302 3317 2.789409 ATTTCTACGCAGGAAGGCTT 57.211 45.000 0.00 0.00 0.00 4.35
2303 3318 2.094762 TTTCTACGCAGGAAGGCTTC 57.905 50.000 18.98 18.98 0.00 3.86
2304 3319 0.973632 TTCTACGCAGGAAGGCTTCA 59.026 50.000 27.17 6.08 0.00 3.02
2305 3320 0.532573 TCTACGCAGGAAGGCTTCAG 59.467 55.000 27.17 19.53 0.00 3.02
2306 3321 0.532573 CTACGCAGGAAGGCTTCAGA 59.467 55.000 27.17 5.83 0.00 3.27
2307 3322 1.137872 CTACGCAGGAAGGCTTCAGAT 59.862 52.381 27.17 10.89 0.00 2.90
2308 3323 0.326264 ACGCAGGAAGGCTTCAGATT 59.674 50.000 27.17 8.10 0.00 2.40
2309 3324 0.731417 CGCAGGAAGGCTTCAGATTG 59.269 55.000 27.17 18.96 0.00 2.67
2310 3325 1.676916 CGCAGGAAGGCTTCAGATTGA 60.677 52.381 27.17 0.00 0.00 2.57
2311 3326 2.440409 GCAGGAAGGCTTCAGATTGAA 58.560 47.619 27.17 0.00 34.79 2.69
2312 3327 3.022406 GCAGGAAGGCTTCAGATTGAAT 58.978 45.455 27.17 1.32 35.59 2.57
2313 3328 3.181489 GCAGGAAGGCTTCAGATTGAATG 60.181 47.826 27.17 13.01 35.59 2.67
2314 3329 3.022406 AGGAAGGCTTCAGATTGAATGC 58.978 45.455 27.17 7.09 35.59 3.56
2315 3330 2.756760 GGAAGGCTTCAGATTGAATGCA 59.243 45.455 27.17 0.00 35.59 3.96
2316 3331 3.383825 GGAAGGCTTCAGATTGAATGCAT 59.616 43.478 27.17 0.00 35.59 3.96
2317 3332 4.499357 GGAAGGCTTCAGATTGAATGCATC 60.499 45.833 27.17 2.38 35.59 3.91
2318 3333 3.899726 AGGCTTCAGATTGAATGCATCT 58.100 40.909 0.00 0.00 35.59 2.90
2319 3334 4.279145 AGGCTTCAGATTGAATGCATCTT 58.721 39.130 0.00 0.00 35.59 2.40
2320 3335 4.098044 AGGCTTCAGATTGAATGCATCTTG 59.902 41.667 0.00 0.00 35.59 3.02
2321 3336 4.142227 GGCTTCAGATTGAATGCATCTTGT 60.142 41.667 0.00 0.00 35.59 3.16
2322 3337 5.408356 GCTTCAGATTGAATGCATCTTGTT 58.592 37.500 0.00 0.00 35.59 2.83
2323 3338 6.405065 GGCTTCAGATTGAATGCATCTTGTTA 60.405 38.462 0.00 0.00 35.59 2.41
2324 3339 7.031372 GCTTCAGATTGAATGCATCTTGTTAA 58.969 34.615 0.00 0.00 35.59 2.01
2325 3340 7.705325 GCTTCAGATTGAATGCATCTTGTTAAT 59.295 33.333 0.00 0.00 35.59 1.40
2326 3341 9.234384 CTTCAGATTGAATGCATCTTGTTAATC 57.766 33.333 0.00 2.61 35.59 1.75
2327 3342 8.515695 TCAGATTGAATGCATCTTGTTAATCT 57.484 30.769 0.00 5.02 34.87 2.40
2328 3343 8.618677 TCAGATTGAATGCATCTTGTTAATCTC 58.381 33.333 11.27 0.00 32.93 2.75
2329 3344 8.403236 CAGATTGAATGCATCTTGTTAATCTCA 58.597 33.333 11.27 0.87 32.93 3.27
2330 3345 8.963725 AGATTGAATGCATCTTGTTAATCTCAA 58.036 29.630 0.00 2.45 30.26 3.02
2331 3346 9.577110 GATTGAATGCATCTTGTTAATCTCAAA 57.423 29.630 0.00 0.00 0.00 2.69
2332 3347 8.746922 TTGAATGCATCTTGTTAATCTCAAAC 57.253 30.769 0.00 0.00 0.00 2.93
2333 3348 7.884257 TGAATGCATCTTGTTAATCTCAAACA 58.116 30.769 0.00 0.00 35.12 2.83
2334 3349 8.358895 TGAATGCATCTTGTTAATCTCAAACAA 58.641 29.630 0.00 1.88 42.83 2.83
2335 3350 9.362539 GAATGCATCTTGTTAATCTCAAACAAT 57.637 29.630 0.00 0.00 43.72 2.71
2336 3351 9.715121 AATGCATCTTGTTAATCTCAAACAATT 57.285 25.926 0.00 0.00 43.72 2.32
2338 3353 9.844790 TGCATCTTGTTAATCTCAAACAATTAG 57.155 29.630 2.21 0.00 43.72 1.73
2339 3354 9.294030 GCATCTTGTTAATCTCAAACAATTAGG 57.706 33.333 2.21 0.00 43.72 2.69
2340 3355 9.793252 CATCTTGTTAATCTCAAACAATTAGGG 57.207 33.333 2.21 0.00 43.72 3.53
2341 3356 9.753674 ATCTTGTTAATCTCAAACAATTAGGGA 57.246 29.630 2.21 0.00 43.72 4.20
2342 3357 9.753674 TCTTGTTAATCTCAAACAATTAGGGAT 57.246 29.630 2.21 0.00 43.72 3.85
2361 3376 5.104259 GGATATCTATCCCAATGGGTGAC 57.896 47.826 19.28 4.21 45.20 3.67
2362 3377 4.383118 GGATATCTATCCCAATGGGTGACG 60.383 50.000 19.28 5.82 45.20 4.35
2363 3378 1.874129 TCTATCCCAATGGGTGACGT 58.126 50.000 19.28 3.43 44.74 4.34
2364 3379 3.035055 TCTATCCCAATGGGTGACGTA 57.965 47.619 19.28 0.00 44.74 3.57
2365 3380 3.583228 TCTATCCCAATGGGTGACGTAT 58.417 45.455 19.28 5.67 44.74 3.06
2366 3381 3.971305 TCTATCCCAATGGGTGACGTATT 59.029 43.478 19.28 0.00 44.74 1.89
2367 3382 5.149239 TCTATCCCAATGGGTGACGTATTA 58.851 41.667 19.28 0.00 44.74 0.98
2368 3383 4.993705 ATCCCAATGGGTGACGTATTAT 57.006 40.909 19.28 0.00 44.74 1.28
2369 3384 4.345859 TCCCAATGGGTGACGTATTATC 57.654 45.455 19.28 0.00 44.74 1.75
2370 3385 3.971305 TCCCAATGGGTGACGTATTATCT 59.029 43.478 19.28 0.00 44.74 1.98
2371 3386 4.039973 TCCCAATGGGTGACGTATTATCTC 59.960 45.833 19.28 0.00 44.74 2.75
2372 3387 4.202315 CCCAATGGGTGACGTATTATCTCA 60.202 45.833 10.91 0.00 38.25 3.27
2373 3388 5.513094 CCCAATGGGTGACGTATTATCTCAT 60.513 44.000 10.91 0.00 38.25 2.90
2374 3389 5.639506 CCAATGGGTGACGTATTATCTCATC 59.360 44.000 0.00 0.00 0.00 2.92
2375 3390 4.499037 TGGGTGACGTATTATCTCATCG 57.501 45.455 0.00 0.00 0.00 3.84
2376 3391 3.887110 TGGGTGACGTATTATCTCATCGT 59.113 43.478 0.00 0.00 37.45 3.73
2377 3392 4.227538 GGGTGACGTATTATCTCATCGTG 58.772 47.826 0.00 0.00 34.93 4.35
2378 3393 4.261489 GGGTGACGTATTATCTCATCGTGT 60.261 45.833 0.00 0.00 34.93 4.49
2379 3394 5.279384 GGTGACGTATTATCTCATCGTGTT 58.721 41.667 0.00 0.00 34.93 3.32
2380 3395 5.398711 GGTGACGTATTATCTCATCGTGTTC 59.601 44.000 0.00 0.00 34.93 3.18
2381 3396 6.200100 GTGACGTATTATCTCATCGTGTTCT 58.800 40.000 0.00 0.00 34.93 3.01
2382 3397 6.691818 GTGACGTATTATCTCATCGTGTTCTT 59.308 38.462 0.00 0.00 34.93 2.52
2383 3398 6.910972 TGACGTATTATCTCATCGTGTTCTTC 59.089 38.462 0.00 0.00 34.93 2.87
2384 3399 5.907945 ACGTATTATCTCATCGTGTTCTTCG 59.092 40.000 0.00 0.00 33.55 3.79
2385 3400 5.907945 CGTATTATCTCATCGTGTTCTTCGT 59.092 40.000 0.00 0.00 0.00 3.85
2386 3401 6.414109 CGTATTATCTCATCGTGTTCTTCGTT 59.586 38.462 0.00 0.00 0.00 3.85
2387 3402 7.044249 CGTATTATCTCATCGTGTTCTTCGTTT 60.044 37.037 0.00 0.00 0.00 3.60
2388 3403 4.910746 ATCTCATCGTGTTCTTCGTTTG 57.089 40.909 0.00 0.00 0.00 2.93
2389 3404 3.713288 TCTCATCGTGTTCTTCGTTTGT 58.287 40.909 0.00 0.00 0.00 2.83
2390 3405 4.116961 TCTCATCGTGTTCTTCGTTTGTT 58.883 39.130 0.00 0.00 0.00 2.83
2391 3406 4.569162 TCTCATCGTGTTCTTCGTTTGTTT 59.431 37.500 0.00 0.00 0.00 2.83
2392 3407 4.583426 TCATCGTGTTCTTCGTTTGTTTG 58.417 39.130 0.00 0.00 0.00 2.93
2393 3408 3.392769 TCGTGTTCTTCGTTTGTTTGG 57.607 42.857 0.00 0.00 0.00 3.28
2394 3409 2.743126 TCGTGTTCTTCGTTTGTTTGGT 59.257 40.909 0.00 0.00 0.00 3.67
2395 3410 3.931468 TCGTGTTCTTCGTTTGTTTGGTA 59.069 39.130 0.00 0.00 0.00 3.25
2396 3411 4.023783 CGTGTTCTTCGTTTGTTTGGTAC 58.976 43.478 0.00 0.00 0.00 3.34
2397 3412 4.023783 GTGTTCTTCGTTTGTTTGGTACG 58.976 43.478 0.00 0.00 36.67 3.67
2398 3413 3.931468 TGTTCTTCGTTTGTTTGGTACGA 59.069 39.130 0.00 0.00 41.95 3.43
2409 3424 3.619483 TGTTTGGTACGAATAAGGATGCG 59.381 43.478 0.00 0.00 40.30 4.73
2418 3433 4.142687 ACGAATAAGGATGCGGACTTTTTG 60.143 41.667 0.00 0.00 38.57 2.44
2423 3438 0.733909 GATGCGGACTTTTTGCCTGC 60.734 55.000 0.00 0.00 0.00 4.85
2454 3469 9.469097 TTTTGGTGTATACATGTTTTATAGCCT 57.531 29.630 9.18 0.00 0.00 4.58
2455 3470 9.469097 TTTGGTGTATACATGTTTTATAGCCTT 57.531 29.630 9.18 0.00 0.00 4.35
2456 3471 9.469097 TTGGTGTATACATGTTTTATAGCCTTT 57.531 29.630 9.18 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.219535 CGTGGTAAGACATACTATGTACAACAC 59.780 40.741 0.00 8.02 45.03 3.32
5 6 7.252708 CGTGGTAAGACATACTATGTACAACA 58.747 38.462 0.00 0.00 45.03 3.33
6 7 6.694411 CCGTGGTAAGACATACTATGTACAAC 59.306 42.308 0.00 0.88 45.03 3.32
7 8 6.602803 TCCGTGGTAAGACATACTATGTACAA 59.397 38.462 0.00 0.00 45.03 2.41
8 9 6.121590 TCCGTGGTAAGACATACTATGTACA 58.878 40.000 0.00 0.00 45.03 2.90
9 10 6.624352 TCCGTGGTAAGACATACTATGTAC 57.376 41.667 1.45 0.00 45.03 2.90
10 11 6.039717 GGTTCCGTGGTAAGACATACTATGTA 59.960 42.308 1.45 0.00 45.03 2.29
12 13 5.163488 TGGTTCCGTGGTAAGACATACTATG 60.163 44.000 0.00 0.00 34.74 2.23
13 14 4.957954 TGGTTCCGTGGTAAGACATACTAT 59.042 41.667 0.00 0.00 34.74 2.12
14 15 4.158394 GTGGTTCCGTGGTAAGACATACTA 59.842 45.833 0.00 0.00 34.74 1.82
15 16 3.056322 GTGGTTCCGTGGTAAGACATACT 60.056 47.826 0.00 0.00 34.74 2.12
16 17 3.256558 GTGGTTCCGTGGTAAGACATAC 58.743 50.000 0.00 0.00 0.00 2.39
17 18 2.898612 TGTGGTTCCGTGGTAAGACATA 59.101 45.455 0.00 0.00 0.00 2.29
18 19 1.695242 TGTGGTTCCGTGGTAAGACAT 59.305 47.619 0.00 0.00 0.00 3.06
19 20 1.121378 TGTGGTTCCGTGGTAAGACA 58.879 50.000 0.00 0.00 0.00 3.41
20 21 1.869132 GTTGTGGTTCCGTGGTAAGAC 59.131 52.381 0.00 0.00 0.00 3.01
21 22 1.764134 AGTTGTGGTTCCGTGGTAAGA 59.236 47.619 0.00 0.00 0.00 2.10
22 23 2.249844 AGTTGTGGTTCCGTGGTAAG 57.750 50.000 0.00 0.00 0.00 2.34
23 24 3.118482 TGTTAGTTGTGGTTCCGTGGTAA 60.118 43.478 0.00 0.00 0.00 2.85
24 25 2.433604 TGTTAGTTGTGGTTCCGTGGTA 59.566 45.455 0.00 0.00 0.00 3.25
25 26 1.209990 TGTTAGTTGTGGTTCCGTGGT 59.790 47.619 0.00 0.00 0.00 4.16
26 27 1.956297 TGTTAGTTGTGGTTCCGTGG 58.044 50.000 0.00 0.00 0.00 4.94
27 28 3.001939 GTCTTGTTAGTTGTGGTTCCGTG 59.998 47.826 0.00 0.00 0.00 4.94
28 29 3.200483 GTCTTGTTAGTTGTGGTTCCGT 58.800 45.455 0.00 0.00 0.00 4.69
29 30 3.199677 TGTCTTGTTAGTTGTGGTTCCG 58.800 45.455 0.00 0.00 0.00 4.30
30 31 5.761234 TGTATGTCTTGTTAGTTGTGGTTCC 59.239 40.000 0.00 0.00 0.00 3.62
31 32 6.563381 CGTGTATGTCTTGTTAGTTGTGGTTC 60.563 42.308 0.00 0.00 0.00 3.62
32 33 5.235616 CGTGTATGTCTTGTTAGTTGTGGTT 59.764 40.000 0.00 0.00 0.00 3.67
33 34 4.748102 CGTGTATGTCTTGTTAGTTGTGGT 59.252 41.667 0.00 0.00 0.00 4.16
34 35 4.377022 GCGTGTATGTCTTGTTAGTTGTGG 60.377 45.833 0.00 0.00 0.00 4.17
35 36 4.210328 TGCGTGTATGTCTTGTTAGTTGTG 59.790 41.667 0.00 0.00 0.00 3.33
36 37 4.373527 TGCGTGTATGTCTTGTTAGTTGT 58.626 39.130 0.00 0.00 0.00 3.32
37 38 4.983215 TGCGTGTATGTCTTGTTAGTTG 57.017 40.909 0.00 0.00 0.00 3.16
38 39 5.294356 TCTTGCGTGTATGTCTTGTTAGTT 58.706 37.500 0.00 0.00 0.00 2.24
39 40 4.878439 TCTTGCGTGTATGTCTTGTTAGT 58.122 39.130 0.00 0.00 0.00 2.24
40 41 5.839262 TTCTTGCGTGTATGTCTTGTTAG 57.161 39.130 0.00 0.00 0.00 2.34
41 42 6.606234 TTTTCTTGCGTGTATGTCTTGTTA 57.394 33.333 0.00 0.00 0.00 2.41
42 43 5.493133 TTTTCTTGCGTGTATGTCTTGTT 57.507 34.783 0.00 0.00 0.00 2.83
43 44 4.554723 GCTTTTCTTGCGTGTATGTCTTGT 60.555 41.667 0.00 0.00 0.00 3.16
44 45 3.908382 GCTTTTCTTGCGTGTATGTCTTG 59.092 43.478 0.00 0.00 0.00 3.02
45 46 4.147219 GCTTTTCTTGCGTGTATGTCTT 57.853 40.909 0.00 0.00 0.00 3.01
46 47 3.813529 GCTTTTCTTGCGTGTATGTCT 57.186 42.857 0.00 0.00 0.00 3.41
66 67 2.677836 CCATGGTATCCACAAACTGACG 59.322 50.000 2.57 0.00 35.80 4.35
102 103 7.062322 TCTGATGGTTCCATTGCAATAGTATT 58.938 34.615 12.53 0.00 0.00 1.89
351 352 1.621992 GAGAGAGAGGGTGTGTGTGA 58.378 55.000 0.00 0.00 0.00 3.58
367 368 2.260822 CAAGGTTGAGGAAGAGGGAGA 58.739 52.381 0.00 0.00 0.00 3.71
372 966 0.322906 GGCCCAAGGTTGAGGAAGAG 60.323 60.000 0.00 0.00 0.00 2.85
393 987 4.160635 GAACGGCAATGTCGCGGG 62.161 66.667 7.32 0.00 36.60 6.13
498 1092 1.474077 ACGGCGAAATACCTAACGAGT 59.526 47.619 16.62 0.00 0.00 4.18
537 1141 1.307309 CCCCTGCAATGACCATGGA 59.693 57.895 21.47 0.00 0.00 3.41
544 1148 1.302949 GTGGCTACCCCTGCAATGA 59.697 57.895 0.00 0.00 0.00 2.57
621 1225 2.982130 GGAAGAAGAGCGGCAGGA 59.018 61.111 1.45 0.00 0.00 3.86
1065 1671 1.228894 TCTCCACACCTTCTCCGCT 60.229 57.895 0.00 0.00 0.00 5.52
1135 1741 2.564553 CTTCCACTCCGGCTCCTTCG 62.565 65.000 0.00 0.00 33.14 3.79
1431 2273 5.334879 CGTCACAACTTTCCTCCCAATAAAG 60.335 44.000 0.00 0.00 36.51 1.85
1755 2705 9.629878 TTTATTACAACCAGAACTTTCCTAACA 57.370 29.630 0.00 0.00 0.00 2.41
1845 2796 2.162008 GCGGTTTATTTTCGCTGGGTTA 59.838 45.455 0.00 0.00 45.16 2.85
1880 2831 4.675303 CTCCTCCCACCACCCCCA 62.675 72.222 0.00 0.00 0.00 4.96
1959 2974 7.775053 AAAAACTGGCACTATTCTTCCATTA 57.225 32.000 0.00 0.00 0.00 1.90
1960 2975 6.670695 AAAAACTGGCACTATTCTTCCATT 57.329 33.333 0.00 0.00 0.00 3.16
1961 2976 6.948309 ACTAAAAACTGGCACTATTCTTCCAT 59.052 34.615 0.00 0.00 0.00 3.41
1962 2977 6.303839 ACTAAAAACTGGCACTATTCTTCCA 58.696 36.000 0.00 0.00 0.00 3.53
1963 2978 6.819397 ACTAAAAACTGGCACTATTCTTCC 57.181 37.500 0.00 0.00 0.00 3.46
1964 2979 7.871853 TCAACTAAAAACTGGCACTATTCTTC 58.128 34.615 0.00 0.00 0.00 2.87
1965 2980 7.817418 TCAACTAAAAACTGGCACTATTCTT 57.183 32.000 0.00 0.00 0.00 2.52
1966 2981 7.817418 TTCAACTAAAAACTGGCACTATTCT 57.183 32.000 0.00 0.00 0.00 2.40
1967 2982 9.476202 AATTTCAACTAAAAACTGGCACTATTC 57.524 29.630 0.00 0.00 0.00 1.75
1968 2983 9.830975 AAATTTCAACTAAAAACTGGCACTATT 57.169 25.926 0.00 0.00 0.00 1.73
1969 2984 9.476202 GAAATTTCAACTAAAAACTGGCACTAT 57.524 29.630 13.40 0.00 0.00 2.12
1970 2985 8.470805 TGAAATTTCAACTAAAAACTGGCACTA 58.529 29.630 18.45 0.00 33.55 2.74
1971 2986 7.327214 TGAAATTTCAACTAAAAACTGGCACT 58.673 30.769 18.45 0.00 33.55 4.40
1972 2987 7.532682 TGAAATTTCAACTAAAAACTGGCAC 57.467 32.000 18.45 0.00 33.55 5.01
1986 3001 5.220970 GGTCAAGTCCTCGTTGAAATTTCAA 60.221 40.000 26.01 26.01 44.31 2.69
1987 3002 4.274950 GGTCAAGTCCTCGTTGAAATTTCA 59.725 41.667 16.91 16.91 35.71 2.69
1988 3003 4.320275 GGGTCAAGTCCTCGTTGAAATTTC 60.320 45.833 11.41 11.41 35.71 2.17
1989 3004 3.568430 GGGTCAAGTCCTCGTTGAAATTT 59.432 43.478 0.00 0.00 35.71 1.82
1990 3005 3.146847 GGGTCAAGTCCTCGTTGAAATT 58.853 45.455 0.00 0.00 35.71 1.82
1991 3006 2.372172 AGGGTCAAGTCCTCGTTGAAAT 59.628 45.455 0.00 0.00 35.71 2.17
1992 3007 1.766496 AGGGTCAAGTCCTCGTTGAAA 59.234 47.619 0.00 0.00 35.71 2.69
1993 3008 1.343465 GAGGGTCAAGTCCTCGTTGAA 59.657 52.381 0.00 0.00 41.01 2.69
1994 3009 0.966920 GAGGGTCAAGTCCTCGTTGA 59.033 55.000 0.00 0.00 41.01 3.18
1995 3010 3.516578 GAGGGTCAAGTCCTCGTTG 57.483 57.895 0.00 0.00 41.01 4.10
1999 3014 0.528470 CAGTCGAGGGTCAAGTCCTC 59.472 60.000 0.00 0.00 45.46 3.71
2000 3015 0.900647 CCAGTCGAGGGTCAAGTCCT 60.901 60.000 0.00 0.00 37.33 3.85
2001 3016 1.592223 CCAGTCGAGGGTCAAGTCC 59.408 63.158 0.00 0.00 0.00 3.85
2002 3017 1.592223 CCCAGTCGAGGGTCAAGTC 59.408 63.158 1.45 0.00 44.24 3.01
2003 3018 3.793060 CCCAGTCGAGGGTCAAGT 58.207 61.111 1.45 0.00 44.24 3.16
2010 3025 2.754658 ACGCCTACCCAGTCGAGG 60.755 66.667 0.00 0.00 0.00 4.63
2011 3026 2.490217 CACGCCTACCCAGTCGAG 59.510 66.667 0.00 0.00 0.00 4.04
2012 3027 3.755628 GCACGCCTACCCAGTCGA 61.756 66.667 0.00 0.00 0.00 4.20
2013 3028 3.583276 TTGCACGCCTACCCAGTCG 62.583 63.158 0.00 0.00 0.00 4.18
2014 3029 2.033194 GTTGCACGCCTACCCAGTC 61.033 63.158 0.00 0.00 0.00 3.51
2015 3030 2.032071 GTTGCACGCCTACCCAGT 59.968 61.111 0.00 0.00 0.00 4.00
2016 3031 2.746277 GGTTGCACGCCTACCCAG 60.746 66.667 0.00 0.00 0.00 4.45
2017 3032 2.824880 AAGGTTGCACGCCTACCCA 61.825 57.895 9.21 0.00 34.81 4.51
2018 3033 2.033602 AAGGTTGCACGCCTACCC 59.966 61.111 9.21 0.00 34.81 3.69
2019 3034 3.263941 CAAGGTTGCACGCCTACC 58.736 61.111 9.21 2.92 34.81 3.18
2029 3044 8.696410 TTAACTTGTTAGAAAAAGCAAGGTTG 57.304 30.769 7.83 0.00 41.65 3.77
2030 3045 9.146984 GTTTAACTTGTTAGAAAAAGCAAGGTT 57.853 29.630 7.83 0.00 41.65 3.50
2031 3046 8.528643 AGTTTAACTTGTTAGAAAAAGCAAGGT 58.471 29.630 7.83 3.90 41.65 3.50
2032 3047 8.926715 AGTTTAACTTGTTAGAAAAAGCAAGG 57.073 30.769 7.83 0.00 41.65 3.61
2033 3048 9.788960 AGAGTTTAACTTGTTAGAAAAAGCAAG 57.211 29.630 0.00 0.00 42.65 4.01
2034 3049 9.567848 CAGAGTTTAACTTGTTAGAAAAAGCAA 57.432 29.630 0.00 0.00 0.00 3.91
2035 3050 8.952278 TCAGAGTTTAACTTGTTAGAAAAAGCA 58.048 29.630 0.00 0.00 0.00 3.91
2036 3051 9.439537 CTCAGAGTTTAACTTGTTAGAAAAAGC 57.560 33.333 0.00 0.00 0.00 3.51
2040 3055 9.886132 AGAACTCAGAGTTTAACTTGTTAGAAA 57.114 29.630 17.19 0.00 38.80 2.52
2041 3056 9.530633 GAGAACTCAGAGTTTAACTTGTTAGAA 57.469 33.333 17.19 0.00 38.80 2.10
2042 3057 8.692710 TGAGAACTCAGAGTTTAACTTGTTAGA 58.307 33.333 17.19 0.00 38.80 2.10
2043 3058 8.873215 TGAGAACTCAGAGTTTAACTTGTTAG 57.127 34.615 17.19 0.00 38.80 2.34
2044 3059 9.661563 TTTGAGAACTCAGAGTTTAACTTGTTA 57.338 29.630 17.19 0.00 38.80 2.41
2045 3060 8.561738 TTTGAGAACTCAGAGTTTAACTTGTT 57.438 30.769 17.19 3.20 38.80 2.83
2046 3061 8.738645 ATTTGAGAACTCAGAGTTTAACTTGT 57.261 30.769 17.19 0.00 38.80 3.16
2094 3109 6.704512 ACAATTTAATTTCAACATGGCGAC 57.295 33.333 0.00 0.00 0.00 5.19
2095 3110 6.925718 TCAACAATTTAATTTCAACATGGCGA 59.074 30.769 0.00 0.00 0.00 5.54
2096 3111 7.114882 TCAACAATTTAATTTCAACATGGCG 57.885 32.000 0.00 0.00 0.00 5.69
2097 3112 8.016801 CCTTCAACAATTTAATTTCAACATGGC 58.983 33.333 0.00 0.00 0.00 4.40
2098 3113 9.054922 ACCTTCAACAATTTAATTTCAACATGG 57.945 29.630 0.00 0.00 0.00 3.66
2101 3116 9.883142 AAGACCTTCAACAATTTAATTTCAACA 57.117 25.926 0.00 0.00 0.00 3.33
2109 3124 9.364989 CACAAAGAAAGACCTTCAACAATTTAA 57.635 29.630 0.00 0.00 36.40 1.52
2110 3125 7.978975 CCACAAAGAAAGACCTTCAACAATTTA 59.021 33.333 0.00 0.00 36.40 1.40
2111 3126 6.818142 CCACAAAGAAAGACCTTCAACAATTT 59.182 34.615 0.00 0.00 36.40 1.82
2112 3127 6.340522 CCACAAAGAAAGACCTTCAACAATT 58.659 36.000 0.00 0.00 36.40 2.32
2113 3128 5.163416 CCCACAAAGAAAGACCTTCAACAAT 60.163 40.000 0.00 0.00 36.40 2.71
2114 3129 4.159506 CCCACAAAGAAAGACCTTCAACAA 59.840 41.667 0.00 0.00 36.40 2.83
2115 3130 3.699038 CCCACAAAGAAAGACCTTCAACA 59.301 43.478 0.00 0.00 36.40 3.33
2116 3131 3.951680 TCCCACAAAGAAAGACCTTCAAC 59.048 43.478 0.00 0.00 36.40 3.18
2117 3132 4.243793 TCCCACAAAGAAAGACCTTCAA 57.756 40.909 0.00 0.00 36.40 2.69
2118 3133 3.943671 TCCCACAAAGAAAGACCTTCA 57.056 42.857 0.00 0.00 36.40 3.02
2127 3142 8.754080 TCACTTTATTTTCTTTCCCACAAAGAA 58.246 29.630 5.59 5.59 42.53 2.52
2128 3143 8.299990 TCACTTTATTTTCTTTCCCACAAAGA 57.700 30.769 0.00 0.00 34.73 2.52
2129 3144 8.940768 TTCACTTTATTTTCTTTCCCACAAAG 57.059 30.769 0.00 0.00 0.00 2.77
2130 3145 8.536175 ACTTCACTTTATTTTCTTTCCCACAAA 58.464 29.630 0.00 0.00 0.00 2.83
2131 3146 8.073467 ACTTCACTTTATTTTCTTTCCCACAA 57.927 30.769 0.00 0.00 0.00 3.33
2132 3147 7.654022 ACTTCACTTTATTTTCTTTCCCACA 57.346 32.000 0.00 0.00 0.00 4.17
2133 3148 9.678941 CTAACTTCACTTTATTTTCTTTCCCAC 57.321 33.333 0.00 0.00 0.00 4.61
2134 3149 9.416284 ACTAACTTCACTTTATTTTCTTTCCCA 57.584 29.630 0.00 0.00 0.00 4.37
2135 3150 9.678941 CACTAACTTCACTTTATTTTCTTTCCC 57.321 33.333 0.00 0.00 0.00 3.97
2140 3155 8.560374 GCAGACACTAACTTCACTTTATTTTCT 58.440 33.333 0.00 0.00 0.00 2.52
2141 3156 8.560374 AGCAGACACTAACTTCACTTTATTTTC 58.440 33.333 0.00 0.00 0.00 2.29
2142 3157 8.451908 AGCAGACACTAACTTCACTTTATTTT 57.548 30.769 0.00 0.00 0.00 1.82
2143 3158 8.451908 AAGCAGACACTAACTTCACTTTATTT 57.548 30.769 0.00 0.00 0.00 1.40
2144 3159 9.209175 CTAAGCAGACACTAACTTCACTTTATT 57.791 33.333 0.00 0.00 0.00 1.40
2145 3160 8.585881 TCTAAGCAGACACTAACTTCACTTTAT 58.414 33.333 0.00 0.00 0.00 1.40
2146 3161 7.948357 TCTAAGCAGACACTAACTTCACTTTA 58.052 34.615 0.00 0.00 0.00 1.85
2147 3162 6.817184 TCTAAGCAGACACTAACTTCACTTT 58.183 36.000 0.00 0.00 0.00 2.66
2148 3163 6.406692 TCTAAGCAGACACTAACTTCACTT 57.593 37.500 0.00 0.00 0.00 3.16
2149 3164 6.406692 TTCTAAGCAGACACTAACTTCACT 57.593 37.500 0.00 0.00 0.00 3.41
2150 3165 7.659652 ATTTCTAAGCAGACACTAACTTCAC 57.340 36.000 0.00 0.00 0.00 3.18
2151 3166 9.371136 CATATTTCTAAGCAGACACTAACTTCA 57.629 33.333 0.00 0.00 0.00 3.02
2152 3167 8.821894 CCATATTTCTAAGCAGACACTAACTTC 58.178 37.037 0.00 0.00 0.00 3.01
2153 3168 7.770897 CCCATATTTCTAAGCAGACACTAACTT 59.229 37.037 0.00 0.00 0.00 2.66
2154 3169 7.125811 TCCCATATTTCTAAGCAGACACTAACT 59.874 37.037 0.00 0.00 0.00 2.24
2155 3170 7.272978 TCCCATATTTCTAAGCAGACACTAAC 58.727 38.462 0.00 0.00 0.00 2.34
2156 3171 7.432148 TCCCATATTTCTAAGCAGACACTAA 57.568 36.000 0.00 0.00 0.00 2.24
2157 3172 7.432148 TTCCCATATTTCTAAGCAGACACTA 57.568 36.000 0.00 0.00 0.00 2.74
2158 3173 5.957771 TCCCATATTTCTAAGCAGACACT 57.042 39.130 0.00 0.00 0.00 3.55
2159 3174 7.573968 ATTTCCCATATTTCTAAGCAGACAC 57.426 36.000 0.00 0.00 0.00 3.67
2160 3175 9.507329 GATATTTCCCATATTTCTAAGCAGACA 57.493 33.333 0.00 0.00 0.00 3.41
2161 3176 9.507329 TGATATTTCCCATATTTCTAAGCAGAC 57.493 33.333 0.00 0.00 0.00 3.51
2162 3177 9.730705 CTGATATTTCCCATATTTCTAAGCAGA 57.269 33.333 0.00 0.00 0.00 4.26
2163 3178 9.512588 ACTGATATTTCCCATATTTCTAAGCAG 57.487 33.333 0.00 0.00 0.00 4.24
2164 3179 9.288576 CACTGATATTTCCCATATTTCTAAGCA 57.711 33.333 0.00 0.00 0.00 3.91
2165 3180 9.289782 ACACTGATATTTCCCATATTTCTAAGC 57.710 33.333 0.00 0.00 0.00 3.09
2169 3184 8.723365 TGGTACACTGATATTTCCCATATTTCT 58.277 33.333 0.00 0.00 0.00 2.52
2170 3185 8.918202 TGGTACACTGATATTTCCCATATTTC 57.082 34.615 0.00 0.00 0.00 2.17
2188 3203 5.999663 CGATGCACGACACTTATGGTACAC 62.000 50.000 0.00 0.00 43.99 2.90
2189 3204 3.977051 CGATGCACGACACTTATGGTACA 60.977 47.826 0.00 0.00 45.05 2.90
2190 3205 2.534349 CGATGCACGACACTTATGGTAC 59.466 50.000 0.00 0.00 45.77 3.34
2191 3206 2.164827 ACGATGCACGACACTTATGGTA 59.835 45.455 14.18 0.00 45.77 3.25
2192 3207 1.067142 ACGATGCACGACACTTATGGT 60.067 47.619 14.18 0.00 45.77 3.55
2193 3208 1.588404 GACGATGCACGACACTTATGG 59.412 52.381 14.18 0.00 45.77 2.74
2194 3209 2.258755 TGACGATGCACGACACTTATG 58.741 47.619 14.18 0.00 45.77 1.90
2195 3210 2.163613 TCTGACGATGCACGACACTTAT 59.836 45.455 14.18 0.00 45.77 1.73
2196 3211 1.538075 TCTGACGATGCACGACACTTA 59.462 47.619 14.18 0.88 45.77 2.24
2197 3212 0.313987 TCTGACGATGCACGACACTT 59.686 50.000 14.18 0.00 45.77 3.16
2198 3213 0.313987 TTCTGACGATGCACGACACT 59.686 50.000 14.18 0.00 45.77 3.55
2199 3214 1.136690 TTTCTGACGATGCACGACAC 58.863 50.000 14.18 6.90 45.77 3.67
2200 3215 1.726248 CATTTCTGACGATGCACGACA 59.274 47.619 14.18 12.72 45.77 4.35
2201 3216 1.061131 CCATTTCTGACGATGCACGAC 59.939 52.381 14.18 9.27 45.77 4.34
2202 3217 1.067213 TCCATTTCTGACGATGCACGA 60.067 47.619 14.18 0.00 45.77 4.35
2204 3219 4.811024 TCTAATCCATTTCTGACGATGCAC 59.189 41.667 0.00 0.00 0.00 4.57
2205 3220 5.022282 TCTAATCCATTTCTGACGATGCA 57.978 39.130 0.00 0.00 0.00 3.96
2206 3221 5.292765 TCTCTAATCCATTTCTGACGATGC 58.707 41.667 0.00 0.00 0.00 3.91
2207 3222 6.368243 CCATCTCTAATCCATTTCTGACGATG 59.632 42.308 0.00 0.00 0.00 3.84
2208 3223 6.042552 ACCATCTCTAATCCATTTCTGACGAT 59.957 38.462 0.00 0.00 0.00 3.73
2209 3224 5.363868 ACCATCTCTAATCCATTTCTGACGA 59.636 40.000 0.00 0.00 0.00 4.20
2210 3225 5.605534 ACCATCTCTAATCCATTTCTGACG 58.394 41.667 0.00 0.00 0.00 4.35
2211 3226 6.586344 TGACCATCTCTAATCCATTTCTGAC 58.414 40.000 0.00 0.00 0.00 3.51
2212 3227 6.385176 ACTGACCATCTCTAATCCATTTCTGA 59.615 38.462 0.00 0.00 0.00 3.27
2213 3228 6.590068 ACTGACCATCTCTAATCCATTTCTG 58.410 40.000 0.00 0.00 0.00 3.02
2214 3229 6.821616 ACTGACCATCTCTAATCCATTTCT 57.178 37.500 0.00 0.00 0.00 2.52
2215 3230 8.997323 CATTACTGACCATCTCTAATCCATTTC 58.003 37.037 0.00 0.00 0.00 2.17
2216 3231 7.941238 CCATTACTGACCATCTCTAATCCATTT 59.059 37.037 0.00 0.00 0.00 2.32
2217 3232 7.072961 ACCATTACTGACCATCTCTAATCCATT 59.927 37.037 0.00 0.00 0.00 3.16
2218 3233 6.560304 ACCATTACTGACCATCTCTAATCCAT 59.440 38.462 0.00 0.00 0.00 3.41
2219 3234 5.905331 ACCATTACTGACCATCTCTAATCCA 59.095 40.000 0.00 0.00 0.00 3.41
2220 3235 6.426646 ACCATTACTGACCATCTCTAATCC 57.573 41.667 0.00 0.00 0.00 3.01
2221 3236 7.500992 TGAACCATTACTGACCATCTCTAATC 58.499 38.462 0.00 0.00 0.00 1.75
2222 3237 7.437713 TGAACCATTACTGACCATCTCTAAT 57.562 36.000 0.00 0.00 0.00 1.73
2223 3238 6.867519 TGAACCATTACTGACCATCTCTAA 57.132 37.500 0.00 0.00 0.00 2.10
2224 3239 6.867519 TTGAACCATTACTGACCATCTCTA 57.132 37.500 0.00 0.00 0.00 2.43
2225 3240 5.762179 TTGAACCATTACTGACCATCTCT 57.238 39.130 0.00 0.00 0.00 3.10
2226 3241 6.431234 ACTTTTGAACCATTACTGACCATCTC 59.569 38.462 0.00 0.00 0.00 2.75
2227 3242 6.306987 ACTTTTGAACCATTACTGACCATCT 58.693 36.000 0.00 0.00 0.00 2.90
2228 3243 6.206634 TGACTTTTGAACCATTACTGACCATC 59.793 38.462 0.00 0.00 0.00 3.51
2229 3244 6.068010 TGACTTTTGAACCATTACTGACCAT 58.932 36.000 0.00 0.00 0.00 3.55
2230 3245 5.441500 TGACTTTTGAACCATTACTGACCA 58.558 37.500 0.00 0.00 0.00 4.02
2231 3246 6.385649 TTGACTTTTGAACCATTACTGACC 57.614 37.500 0.00 0.00 0.00 4.02
2232 3247 8.871686 AAATTGACTTTTGAACCATTACTGAC 57.128 30.769 0.00 0.00 0.00 3.51
2233 3248 9.883142 AAAAATTGACTTTTGAACCATTACTGA 57.117 25.926 0.00 0.00 37.14 3.41
2239 3254 9.625747 ACCATTAAAAATTGACTTTTGAACCAT 57.374 25.926 0.00 0.00 37.14 3.55
2240 3255 9.454859 AACCATTAAAAATTGACTTTTGAACCA 57.545 25.926 0.00 0.00 37.14 3.67
2269 3284 9.651718 CCTGCGTAGAAATATAAGTGATTTTTC 57.348 33.333 0.53 0.00 36.35 2.29
2270 3285 9.391006 TCCTGCGTAGAAATATAAGTGATTTTT 57.609 29.630 0.53 0.00 0.00 1.94
2271 3286 8.958119 TCCTGCGTAGAAATATAAGTGATTTT 57.042 30.769 0.53 0.00 0.00 1.82
2272 3287 8.958119 TTCCTGCGTAGAAATATAAGTGATTT 57.042 30.769 0.53 0.00 0.00 2.17
2273 3288 7.657761 CCTTCCTGCGTAGAAATATAAGTGATT 59.342 37.037 0.53 0.00 0.00 2.57
2274 3289 7.155328 CCTTCCTGCGTAGAAATATAAGTGAT 58.845 38.462 0.53 0.00 0.00 3.06
2275 3290 6.513180 CCTTCCTGCGTAGAAATATAAGTGA 58.487 40.000 0.53 0.00 0.00 3.41
2276 3291 5.177696 GCCTTCCTGCGTAGAAATATAAGTG 59.822 44.000 0.53 0.00 0.00 3.16
2277 3292 5.070580 AGCCTTCCTGCGTAGAAATATAAGT 59.929 40.000 0.53 0.00 36.02 2.24
2278 3293 5.542779 AGCCTTCCTGCGTAGAAATATAAG 58.457 41.667 0.53 0.00 36.02 1.73
2279 3294 5.546621 AGCCTTCCTGCGTAGAAATATAA 57.453 39.130 0.53 0.00 36.02 0.98
2280 3295 5.069914 TGAAGCCTTCCTGCGTAGAAATATA 59.930 40.000 0.53 0.00 36.02 0.86
2281 3296 4.141711 TGAAGCCTTCCTGCGTAGAAATAT 60.142 41.667 0.53 0.00 36.02 1.28
2282 3297 3.196901 TGAAGCCTTCCTGCGTAGAAATA 59.803 43.478 0.53 0.00 36.02 1.40
2283 3298 2.027192 TGAAGCCTTCCTGCGTAGAAAT 60.027 45.455 0.53 0.00 36.02 2.17
2284 3299 1.346395 TGAAGCCTTCCTGCGTAGAAA 59.654 47.619 0.53 0.00 36.02 2.52
2285 3300 0.973632 TGAAGCCTTCCTGCGTAGAA 59.026 50.000 0.53 0.00 36.02 2.10
2286 3301 0.532573 CTGAAGCCTTCCTGCGTAGA 59.467 55.000 0.53 0.00 36.02 2.59
2287 3302 0.532573 TCTGAAGCCTTCCTGCGTAG 59.467 55.000 1.21 0.00 36.02 3.51
2288 3303 1.195115 ATCTGAAGCCTTCCTGCGTA 58.805 50.000 1.21 0.00 36.02 4.42
2289 3304 0.326264 AATCTGAAGCCTTCCTGCGT 59.674 50.000 1.21 0.00 36.02 5.24
2290 3305 0.731417 CAATCTGAAGCCTTCCTGCG 59.269 55.000 1.21 0.00 36.02 5.18
2291 3306 2.119801 TCAATCTGAAGCCTTCCTGC 57.880 50.000 1.21 0.00 0.00 4.85
2292 3307 3.181489 GCATTCAATCTGAAGCCTTCCTG 60.181 47.826 1.21 0.00 40.05 3.86
2293 3308 3.022406 GCATTCAATCTGAAGCCTTCCT 58.978 45.455 1.21 0.00 40.05 3.36
2294 3309 2.756760 TGCATTCAATCTGAAGCCTTCC 59.243 45.455 1.21 0.00 40.05 3.46
2295 3310 4.338682 AGATGCATTCAATCTGAAGCCTTC 59.661 41.667 0.00 0.00 40.05 3.46
2296 3311 4.279145 AGATGCATTCAATCTGAAGCCTT 58.721 39.130 0.00 0.00 40.05 4.35
2297 3312 3.899726 AGATGCATTCAATCTGAAGCCT 58.100 40.909 0.00 0.00 40.05 4.58
2298 3313 4.142227 ACAAGATGCATTCAATCTGAAGCC 60.142 41.667 0.00 0.00 40.05 4.35
2299 3314 4.995124 ACAAGATGCATTCAATCTGAAGC 58.005 39.130 0.00 0.87 40.05 3.86
2300 3315 9.234384 GATTAACAAGATGCATTCAATCTGAAG 57.766 33.333 0.00 0.00 40.05 3.02
2301 3316 8.963725 AGATTAACAAGATGCATTCAATCTGAA 58.036 29.630 0.00 0.00 41.09 3.02
2302 3317 8.515695 AGATTAACAAGATGCATTCAATCTGA 57.484 30.769 0.00 0.00 31.96 3.27
2303 3318 8.403236 TGAGATTAACAAGATGCATTCAATCTG 58.597 33.333 16.33 6.26 33.00 2.90
2304 3319 8.515695 TGAGATTAACAAGATGCATTCAATCT 57.484 30.769 0.00 8.95 34.95 2.40
2305 3320 9.577110 TTTGAGATTAACAAGATGCATTCAATC 57.423 29.630 0.00 4.51 0.00 2.67
2306 3321 9.362539 GTTTGAGATTAACAAGATGCATTCAAT 57.637 29.630 0.00 0.00 0.00 2.57
2307 3322 8.358895 TGTTTGAGATTAACAAGATGCATTCAA 58.641 29.630 0.00 0.00 32.89 2.69
2308 3323 7.884257 TGTTTGAGATTAACAAGATGCATTCA 58.116 30.769 0.00 0.00 32.89 2.57
2309 3324 8.746922 TTGTTTGAGATTAACAAGATGCATTC 57.253 30.769 0.00 0.00 39.75 2.67
2310 3325 9.715121 AATTGTTTGAGATTAACAAGATGCATT 57.285 25.926 0.00 0.00 45.50 3.56
2312 3327 9.844790 CTAATTGTTTGAGATTAACAAGATGCA 57.155 29.630 0.00 0.00 45.50 3.96
2313 3328 9.294030 CCTAATTGTTTGAGATTAACAAGATGC 57.706 33.333 0.00 0.00 45.50 3.91
2314 3329 9.793252 CCCTAATTGTTTGAGATTAACAAGATG 57.207 33.333 0.00 0.00 45.50 2.90
2315 3330 9.753674 TCCCTAATTGTTTGAGATTAACAAGAT 57.246 29.630 0.00 0.00 45.50 2.40
2316 3331 9.753674 ATCCCTAATTGTTTGAGATTAACAAGA 57.246 29.630 0.00 0.00 45.50 3.02
2350 3365 4.956085 TGAGATAATACGTCACCCATTGG 58.044 43.478 0.00 0.00 37.80 3.16
2351 3366 5.346011 CGATGAGATAATACGTCACCCATTG 59.654 44.000 0.00 0.00 0.00 2.82
2352 3367 5.010719 ACGATGAGATAATACGTCACCCATT 59.989 40.000 0.00 0.00 31.69 3.16
2353 3368 4.523173 ACGATGAGATAATACGTCACCCAT 59.477 41.667 0.00 0.00 31.69 4.00
2354 3369 3.887110 ACGATGAGATAATACGTCACCCA 59.113 43.478 0.00 0.00 31.69 4.51
2355 3370 4.227538 CACGATGAGATAATACGTCACCC 58.772 47.826 0.00 0.00 35.05 4.61
2356 3371 4.856664 ACACGATGAGATAATACGTCACC 58.143 43.478 0.00 0.00 35.05 4.02
2357 3372 6.200100 AGAACACGATGAGATAATACGTCAC 58.800 40.000 0.00 0.00 35.05 3.67
2358 3373 6.373186 AGAACACGATGAGATAATACGTCA 57.627 37.500 0.00 0.00 35.05 4.35
2359 3374 6.085198 CGAAGAACACGATGAGATAATACGTC 59.915 42.308 0.00 0.00 35.05 4.34
2360 3375 5.907945 CGAAGAACACGATGAGATAATACGT 59.092 40.000 0.00 0.00 37.68 3.57
2361 3376 5.907945 ACGAAGAACACGATGAGATAATACG 59.092 40.000 0.00 0.00 34.70 3.06
2362 3377 7.681125 AACGAAGAACACGATGAGATAATAC 57.319 36.000 0.00 0.00 34.70 1.89
2363 3378 7.758076 ACAAACGAAGAACACGATGAGATAATA 59.242 33.333 0.00 0.00 34.70 0.98
2364 3379 6.590292 ACAAACGAAGAACACGATGAGATAAT 59.410 34.615 0.00 0.00 34.70 1.28
2365 3380 5.924254 ACAAACGAAGAACACGATGAGATAA 59.076 36.000 0.00 0.00 34.70 1.75
2366 3381 5.466819 ACAAACGAAGAACACGATGAGATA 58.533 37.500 0.00 0.00 34.70 1.98
2367 3382 4.307432 ACAAACGAAGAACACGATGAGAT 58.693 39.130 0.00 0.00 34.70 2.75
2368 3383 3.713288 ACAAACGAAGAACACGATGAGA 58.287 40.909 0.00 0.00 34.70 3.27
2369 3384 4.452890 AACAAACGAAGAACACGATGAG 57.547 40.909 0.00 0.00 34.70 2.90
2370 3385 4.495019 CCAAACAAACGAAGAACACGATGA 60.495 41.667 0.00 0.00 34.70 2.92
2371 3386 3.723764 CCAAACAAACGAAGAACACGATG 59.276 43.478 0.00 0.00 34.70 3.84
2372 3387 3.375922 ACCAAACAAACGAAGAACACGAT 59.624 39.130 0.00 0.00 34.70 3.73
2373 3388 2.743126 ACCAAACAAACGAAGAACACGA 59.257 40.909 0.00 0.00 34.70 4.35
2374 3389 3.125698 ACCAAACAAACGAAGAACACG 57.874 42.857 0.00 0.00 0.00 4.49
2375 3390 4.023783 CGTACCAAACAAACGAAGAACAC 58.976 43.478 0.00 0.00 38.89 3.32
2376 3391 3.931468 TCGTACCAAACAAACGAAGAACA 59.069 39.130 0.00 0.00 42.18 3.18
2377 3392 4.519191 TCGTACCAAACAAACGAAGAAC 57.481 40.909 0.00 0.00 42.18 3.01
2382 3397 5.295950 TCCTTATTCGTACCAAACAAACGA 58.704 37.500 0.00 0.00 43.31 3.85
2383 3398 5.594724 TCCTTATTCGTACCAAACAAACG 57.405 39.130 0.00 0.00 37.96 3.60
2384 3399 5.798434 GCATCCTTATTCGTACCAAACAAAC 59.202 40.000 0.00 0.00 0.00 2.93
2385 3400 5.391097 CGCATCCTTATTCGTACCAAACAAA 60.391 40.000 0.00 0.00 0.00 2.83
2386 3401 4.093703 CGCATCCTTATTCGTACCAAACAA 59.906 41.667 0.00 0.00 0.00 2.83
2387 3402 3.619483 CGCATCCTTATTCGTACCAAACA 59.381 43.478 0.00 0.00 0.00 2.83
2388 3403 3.001939 CCGCATCCTTATTCGTACCAAAC 59.998 47.826 0.00 0.00 0.00 2.93
2389 3404 3.118702 TCCGCATCCTTATTCGTACCAAA 60.119 43.478 0.00 0.00 0.00 3.28
2390 3405 2.431419 TCCGCATCCTTATTCGTACCAA 59.569 45.455 0.00 0.00 0.00 3.67
2391 3406 2.033372 TCCGCATCCTTATTCGTACCA 58.967 47.619 0.00 0.00 0.00 3.25
2392 3407 2.035576 AGTCCGCATCCTTATTCGTACC 59.964 50.000 0.00 0.00 0.00 3.34
2393 3408 3.366440 AGTCCGCATCCTTATTCGTAC 57.634 47.619 0.00 0.00 0.00 3.67
2394 3409 4.395959 AAAGTCCGCATCCTTATTCGTA 57.604 40.909 0.00 0.00 0.00 3.43
2395 3410 2.981859 AAGTCCGCATCCTTATTCGT 57.018 45.000 0.00 0.00 0.00 3.85
2396 3411 4.342772 CAAAAAGTCCGCATCCTTATTCG 58.657 43.478 0.00 0.00 0.00 3.34
2397 3412 4.105486 GCAAAAAGTCCGCATCCTTATTC 58.895 43.478 0.00 0.00 0.00 1.75
2398 3413 3.119137 GGCAAAAAGTCCGCATCCTTATT 60.119 43.478 0.00 0.00 0.00 1.40
2399 3414 2.427095 GGCAAAAAGTCCGCATCCTTAT 59.573 45.455 0.00 0.00 0.00 1.73
2400 3415 1.816224 GGCAAAAAGTCCGCATCCTTA 59.184 47.619 0.00 0.00 0.00 2.69
2401 3416 0.603065 GGCAAAAAGTCCGCATCCTT 59.397 50.000 0.00 0.00 0.00 3.36
2409 3424 2.602257 AAGTTGCAGGCAAAAAGTCC 57.398 45.000 8.47 0.00 37.70 3.85
2418 3433 2.880963 TACACCAAAAAGTTGCAGGC 57.119 45.000 0.00 0.00 33.01 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.