Multiple sequence alignment - TraesCS2D01G184900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G184900 chr2D 100.000 2791 0 0 1 2791 129958142 129960932 0.000000e+00 5155.0
1 TraesCS2D01G184900 chr2D 92.025 163 13 0 2036 2198 56541150 56540988 2.160000e-56 230.0
2 TraesCS2D01G184900 chr2D 89.385 179 17 2 2017 2194 445733845 445733668 1.010000e-54 224.0
3 TraesCS2D01G184900 chr2D 88.889 180 19 1 2020 2198 305514858 305515037 1.300000e-53 220.0
4 TraesCS2D01G184900 chr2D 79.139 302 24 12 530 796 129911736 129912033 3.700000e-39 172.0
5 TraesCS2D01G184900 chr2D 82.000 200 33 3 37 235 304707434 304707237 1.720000e-37 167.0
6 TraesCS2D01G184900 chr2D 81.726 197 30 4 1110 1300 136181509 136181313 2.880000e-35 159.0
7 TraesCS2D01G184900 chr2D 80.714 140 21 4 1101 1234 129799225 129799364 1.370000e-18 104.0
8 TraesCS2D01G184900 chr2D 81.102 127 18 4 1114 1234 129789317 129789443 2.290000e-16 97.1
9 TraesCS2D01G184900 chr2D 89.706 68 7 0 1114 1181 129353140 129353207 1.380000e-13 87.9
10 TraesCS2D01G184900 chr2B 93.548 930 51 3 961 1887 183313926 183314849 0.000000e+00 1376.0
11 TraesCS2D01G184900 chr2B 90.057 523 25 5 2293 2791 183315052 183315571 0.000000e+00 652.0
12 TraesCS2D01G184900 chr2B 86.574 216 22 4 214 429 183309124 183309332 6.010000e-57 231.0
13 TraesCS2D01G184900 chr2B 93.043 115 7 1 558 671 183311691 183311805 1.720000e-37 167.0
14 TraesCS2D01G184900 chr2B 91.176 68 6 0 1114 1181 182936470 182936537 2.960000e-15 93.5
15 TraesCS2D01G184900 chr2A 90.233 901 48 4 990 1887 136163261 136164124 0.000000e+00 1140.0
16 TraesCS2D01G184900 chr2A 88.300 641 61 6 1017 1650 136161037 136161670 0.000000e+00 756.0
17 TraesCS2D01G184900 chr2A 82.995 788 86 20 1 771 136159891 136160647 0.000000e+00 669.0
18 TraesCS2D01G184900 chr2A 85.417 528 27 19 2293 2791 136164327 136164833 1.150000e-138 503.0
19 TraesCS2D01G184900 chr2A 84.599 461 41 18 2201 2647 136162122 136162566 5.520000e-117 431.0
20 TraesCS2D01G184900 chr2A 90.311 289 22 2 558 840 136162791 136163079 9.440000e-100 374.0
21 TraesCS2D01G184900 chr2A 86.344 227 23 2 253 472 136162571 136162796 9.990000e-60 241.0
22 TraesCS2D01G184900 chr6D 82.192 292 47 5 30 319 372808349 372808637 2.150000e-61 246.0
23 TraesCS2D01G184900 chr6D 88.770 187 19 2 2028 2214 15801273 15801089 7.780000e-56 228.0
24 TraesCS2D01G184900 chr6D 90.286 175 15 2 2021 2195 229431059 229430887 7.780000e-56 228.0
25 TraesCS2D01G184900 chr4B 93.631 157 10 0 2036 2192 483266534 483266378 4.650000e-58 235.0
26 TraesCS2D01G184900 chr7B 90.698 172 16 0 2022 2193 561750782 561750611 2.160000e-56 230.0
27 TraesCS2D01G184900 chr7D 85.455 220 29 3 30 248 585422174 585421957 2.800000e-55 226.0
28 TraesCS2D01G184900 chrUn 90.643 171 12 4 2036 2206 31220651 31220485 1.010000e-54 224.0
29 TraesCS2D01G184900 chr4D 88.298 188 16 5 2026 2208 81667559 81667745 1.300000e-53 220.0
30 TraesCS2D01G184900 chr3D 78.125 96 15 5 338 431 123616157 123616248 3.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G184900 chr2D 129958142 129960932 2790 False 5155.000000 5155 100.000000 1 2791 1 chr2D.!!$F5 2790
1 TraesCS2D01G184900 chr2B 183309124 183315571 6447 False 606.500000 1376 90.805500 214 2791 4 chr2B.!!$F2 2577
2 TraesCS2D01G184900 chr2A 136159891 136164833 4942 False 587.714286 1140 86.885571 1 2791 7 chr2A.!!$F1 2790


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 6285 0.033228 CGAGCAGGGGAATCTAGCAG 59.967 60.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 7214 0.032952 GACAGACCTACACCGTGCAA 59.967 55.0 0.0 0.0 0.0 4.08 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.235016 GTAATGTTGCCCTGGTGACAA 58.765 47.619 0.00 0.00 42.06 3.18
30 31 0.603065 GTTGCCCTGGTGACAAATCC 59.397 55.000 0.00 0.00 42.06 3.01
60 61 1.667830 CTGCCCAAAGCTTCGTCGA 60.668 57.895 0.00 0.00 44.23 4.20
79 80 2.683933 AAGGGGATCGAGTGCCGT 60.684 61.111 0.00 0.00 39.69 5.68
98 99 3.061322 CGTCACACTTATTCCAAACGGA 58.939 45.455 0.00 0.00 0.00 4.69
120 121 0.036164 CCGTCATCCCCAACTCAACA 59.964 55.000 0.00 0.00 0.00 3.33
144 145 0.389948 CGCCAAGACCACTGACCTAC 60.390 60.000 0.00 0.00 0.00 3.18
155 156 4.197750 CCACTGACCTACTATCTACACGT 58.802 47.826 0.00 0.00 0.00 4.49
157 158 4.874396 CACTGACCTACTATCTACACGTCA 59.126 45.833 0.00 0.00 0.00 4.35
158 159 5.353400 CACTGACCTACTATCTACACGTCAA 59.647 44.000 0.00 0.00 0.00 3.18
159 160 6.038382 CACTGACCTACTATCTACACGTCAAT 59.962 42.308 0.00 0.00 0.00 2.57
160 161 6.038382 ACTGACCTACTATCTACACGTCAATG 59.962 42.308 0.00 0.00 0.00 2.82
167 168 0.249120 CTACACGTCAATGCCCCAGA 59.751 55.000 0.00 0.00 0.00 3.86
169 170 0.908910 ACACGTCAATGCCCCAGATA 59.091 50.000 0.00 0.00 0.00 1.98
170 171 1.490490 ACACGTCAATGCCCCAGATAT 59.510 47.619 0.00 0.00 0.00 1.63
174 175 2.303022 CGTCAATGCCCCAGATATAGGT 59.697 50.000 0.00 0.00 0.00 3.08
176 177 4.729868 GTCAATGCCCCAGATATAGGTTT 58.270 43.478 0.00 0.00 0.00 3.27
181 182 2.716969 GCCCCAGATATAGGTTTCCCTT 59.283 50.000 0.00 0.00 42.66 3.95
196 197 2.507992 CTTGCTCTCCTGCCGTCG 60.508 66.667 0.00 0.00 0.00 5.12
200 201 4.200283 CTCTCCTGCCGTCGGAGC 62.200 72.222 17.49 0.06 46.11 4.70
251 252 2.186903 CCAACGGCGGACTAGCAT 59.813 61.111 13.24 0.00 39.27 3.79
265 266 4.202472 GGACTAGCATAATTGGGTAGCCTT 60.202 45.833 13.11 1.35 39.36 4.35
271 272 5.360999 AGCATAATTGGGTAGCCTTCTTTTC 59.639 40.000 13.11 0.00 0.00 2.29
309 310 0.038892 GAGGAACCGCTTCGTGTGTA 60.039 55.000 0.00 0.00 0.00 2.90
410 412 6.863126 GGTTTCAGATATGAAAGTTGTGGTTG 59.137 38.462 15.54 0.00 38.32 3.77
434 436 1.639722 TGAGGACATTTGAGGGACGA 58.360 50.000 0.00 0.00 0.00 4.20
442 451 2.725203 TTTGAGGGACGAGTTGGCGG 62.725 60.000 0.00 0.00 35.12 6.13
459 468 2.751688 GGAACGTGTAGGGGGCAA 59.248 61.111 0.00 0.00 0.00 4.52
465 474 0.958876 CGTGTAGGGGGCAAGGTTTC 60.959 60.000 0.00 0.00 0.00 2.78
470 479 1.155155 GGGGGCAAGGTTTCCTCAA 59.845 57.895 0.00 0.00 30.89 3.02
474 483 0.811281 GGCAAGGTTTCCTCAATCCG 59.189 55.000 0.00 0.00 30.89 4.18
476 485 0.811281 CAAGGTTTCCTCAATCCGGC 59.189 55.000 0.00 0.00 30.89 6.13
477 486 0.323451 AAGGTTTCCTCAATCCGGCC 60.323 55.000 0.00 0.00 30.89 6.13
484 493 0.393077 CCTCAATCCGGCCGTAGATT 59.607 55.000 26.12 22.53 32.95 2.40
485 494 1.202651 CCTCAATCCGGCCGTAGATTT 60.203 52.381 26.12 6.92 30.29 2.17
487 496 2.544267 CTCAATCCGGCCGTAGATTTTC 59.456 50.000 26.12 0.00 30.29 2.29
496 505 4.267928 CGGCCGTAGATTTTCTTAGAACAG 59.732 45.833 19.50 0.00 0.00 3.16
546 555 5.885230 TTATGTCTGCTTGGATCAACTTG 57.115 39.130 0.00 0.00 0.00 3.16
554 563 3.304928 GCTTGGATCAACTTGTCACAAGG 60.305 47.826 21.71 5.01 35.60 3.61
556 565 1.197721 GGATCAACTTGTCACAAGGCG 59.802 52.381 21.71 11.78 0.00 5.52
587 4026 0.313672 TGCGCAAAGTGAAATCCACC 59.686 50.000 8.16 0.00 46.87 4.61
741 5555 2.107204 ACACTTTCCTCAGTCAGCCATT 59.893 45.455 0.00 0.00 0.00 3.16
743 5557 2.089980 CTTTCCTCAGTCAGCCATTGG 58.910 52.381 0.00 0.00 0.00 3.16
759 5573 0.107263 TTGGCACAGCTTCTGTCACA 60.107 50.000 0.00 0.00 43.43 3.58
760 5574 0.107263 TGGCACAGCTTCTGTCACAA 60.107 50.000 0.00 0.00 43.43 3.33
774 5588 1.135689 GTCACAACGCCATAAAGCCAG 60.136 52.381 0.00 0.00 0.00 4.85
836 5971 3.364441 GCGTTGCACATGGGCAGA 61.364 61.111 23.95 11.61 45.88 4.26
840 5975 0.890542 GTTGCACATGGGCAGAGTCA 60.891 55.000 23.95 4.68 45.88 3.41
844 5979 1.340889 GCACATGGGCAGAGTCAAAAA 59.659 47.619 16.99 0.00 0.00 1.94
848 5983 2.727123 TGGGCAGAGTCAAAAACAGA 57.273 45.000 0.00 0.00 0.00 3.41
853 5988 2.604132 GCAGAGTCAAAAACAGAGCTGC 60.604 50.000 0.00 0.00 40.34 5.25
855 5990 3.065786 CAGAGTCAAAAACAGAGCTGCAA 59.934 43.478 1.02 0.00 0.00 4.08
863 5998 1.818642 ACAGAGCTGCAATCAAGACC 58.181 50.000 1.02 0.00 0.00 3.85
865 6000 1.467734 CAGAGCTGCAATCAAGACCAC 59.532 52.381 1.02 0.00 0.00 4.16
866 6001 0.807496 GAGCTGCAATCAAGACCACC 59.193 55.000 1.02 0.00 0.00 4.61
870 6005 0.109532 TGCAATCAAGACCACCGGAA 59.890 50.000 9.46 0.00 0.00 4.30
871 6006 0.521735 GCAATCAAGACCACCGGAAC 59.478 55.000 9.46 0.00 0.00 3.62
896 6128 3.347590 CCCTTCTTCCCCCACCCC 61.348 72.222 0.00 0.00 0.00 4.95
898 6130 2.204306 CTTCTTCCCCCACCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
899 6131 2.534272 TTCTTCCCCCACCCCCTG 60.534 66.667 0.00 0.00 0.00 4.45
914 6179 1.071471 CCTGAGCCGAAACACCAGT 59.929 57.895 0.00 0.00 0.00 4.00
915 6180 1.230635 CCTGAGCCGAAACACCAGTG 61.231 60.000 0.00 0.00 0.00 3.66
926 6191 1.807814 ACACCAGTGGAGAGAAACCT 58.192 50.000 18.40 0.00 34.19 3.50
928 6193 2.104963 ACACCAGTGGAGAGAAACCTTC 59.895 50.000 18.40 0.00 34.19 3.46
938 6203 1.518367 AGAAACCTTCTCCACCACCA 58.482 50.000 0.00 0.00 34.07 4.17
939 6204 2.065799 AGAAACCTTCTCCACCACCAT 58.934 47.619 0.00 0.00 34.07 3.55
940 6205 3.256704 AGAAACCTTCTCCACCACCATA 58.743 45.455 0.00 0.00 34.07 2.74
941 6206 3.009143 AGAAACCTTCTCCACCACCATAC 59.991 47.826 0.00 0.00 34.07 2.39
942 6207 0.902531 ACCTTCTCCACCACCATACG 59.097 55.000 0.00 0.00 0.00 3.06
943 6208 0.902531 CCTTCTCCACCACCATACGT 59.097 55.000 0.00 0.00 0.00 3.57
944 6209 1.134788 CCTTCTCCACCACCATACGTC 60.135 57.143 0.00 0.00 0.00 4.34
945 6210 0.899720 TTCTCCACCACCATACGTCC 59.100 55.000 0.00 0.00 0.00 4.79
965 6252 6.043938 ACGTCCATACCTCCATTATTTACCAT 59.956 38.462 0.00 0.00 0.00 3.55
978 6265 4.778213 ATTTACCATCAGCTAGCTTGGA 57.222 40.909 32.81 21.53 33.36 3.53
993 6280 0.909610 TTGGACGAGCAGGGGAATCT 60.910 55.000 0.00 0.00 0.00 2.40
998 6285 0.033228 CGAGCAGGGGAATCTAGCAG 59.967 60.000 0.00 0.00 0.00 4.24
1033 6323 0.987081 AGCCATCCTGCTCCTCATGT 60.987 55.000 0.00 0.00 36.75 3.21
1254 6544 4.093952 CCGCGCTTCAGCAACCTG 62.094 66.667 5.56 0.00 42.21 4.00
1262 6552 4.680237 CAGCAACCTGACCGCCGA 62.680 66.667 0.00 0.00 41.77 5.54
1325 6615 4.504916 CGGCGAGGTGGAGCTCTG 62.505 72.222 14.64 0.00 0.00 3.35
1365 6655 3.989698 AATCGAGGTGCGGACGCTG 62.990 63.158 18.04 3.15 42.51 5.18
1404 6694 3.873883 GGCGTGCTCAGCATCTGC 61.874 66.667 0.54 7.86 41.91 4.26
1823 7113 2.182842 CCAGAGTTGCGCCATAGGC 61.183 63.158 4.18 0.00 46.75 3.93
1864 7154 3.736483 CTGGTGTTCAGCGCAGTT 58.264 55.556 11.47 0.00 36.60 3.16
1893 7183 1.355210 CACTGTTGGTGGCACGTTC 59.645 57.895 12.17 4.68 41.90 3.95
1894 7184 2.177580 ACTGTTGGTGGCACGTTCG 61.178 57.895 12.17 1.43 0.00 3.95
1895 7185 2.892334 CTGTTGGTGGCACGTTCGG 61.892 63.158 12.17 5.37 0.00 4.30
1896 7186 2.898343 GTTGGTGGCACGTTCGGT 60.898 61.111 12.17 0.00 0.00 4.69
1897 7187 2.589442 TTGGTGGCACGTTCGGTC 60.589 61.111 12.17 0.00 0.00 4.79
1898 7188 4.612412 TGGTGGCACGTTCGGTCC 62.612 66.667 12.17 0.00 0.00 4.46
1899 7189 4.612412 GGTGGCACGTTCGGTCCA 62.612 66.667 12.17 0.84 0.00 4.02
1900 7190 2.358247 GTGGCACGTTCGGTCCAT 60.358 61.111 0.00 0.00 31.49 3.41
1901 7191 2.358125 TGGCACGTTCGGTCCATG 60.358 61.111 0.00 0.00 0.00 3.66
1902 7192 2.358247 GGCACGTTCGGTCCATGT 60.358 61.111 0.00 0.00 0.00 3.21
1903 7193 1.079681 GGCACGTTCGGTCCATGTA 60.080 57.895 0.00 0.00 0.00 2.29
1904 7194 0.461339 GGCACGTTCGGTCCATGTAT 60.461 55.000 0.00 0.00 0.00 2.29
1905 7195 0.928229 GCACGTTCGGTCCATGTATC 59.072 55.000 0.00 0.00 0.00 2.24
1906 7196 1.567504 CACGTTCGGTCCATGTATCC 58.432 55.000 0.00 0.00 0.00 2.59
1907 7197 0.462789 ACGTTCGGTCCATGTATCCC 59.537 55.000 0.00 0.00 0.00 3.85
1908 7198 0.462375 CGTTCGGTCCATGTATCCCA 59.538 55.000 0.00 0.00 0.00 4.37
1909 7199 1.070134 CGTTCGGTCCATGTATCCCAT 59.930 52.381 0.00 0.00 0.00 4.00
1910 7200 2.767505 GTTCGGTCCATGTATCCCATC 58.232 52.381 0.00 0.00 0.00 3.51
1911 7201 1.348064 TCGGTCCATGTATCCCATCC 58.652 55.000 0.00 0.00 0.00 3.51
1912 7202 1.055849 CGGTCCATGTATCCCATCCA 58.944 55.000 0.00 0.00 0.00 3.41
1913 7203 1.630369 CGGTCCATGTATCCCATCCAT 59.370 52.381 0.00 0.00 0.00 3.41
1914 7204 2.616256 CGGTCCATGTATCCCATCCATG 60.616 54.545 0.00 0.00 36.56 3.66
1916 7206 1.843368 CCATGTATCCCATCCATGGC 58.157 55.000 6.96 0.00 46.45 4.40
1917 7207 1.617804 CCATGTATCCCATCCATGGCC 60.618 57.143 6.96 0.00 46.45 5.36
1918 7208 0.329261 ATGTATCCCATCCATGGCCG 59.671 55.000 6.96 0.00 46.70 6.13
1919 7209 1.059584 TGTATCCCATCCATGGCCGT 61.060 55.000 6.96 0.00 46.70 5.68
1920 7210 0.321653 GTATCCCATCCATGGCCGTC 60.322 60.000 6.96 0.00 46.70 4.79
1921 7211 1.826340 TATCCCATCCATGGCCGTCG 61.826 60.000 6.96 0.00 46.70 5.12
1922 7212 4.175337 CCCATCCATGGCCGTCGT 62.175 66.667 6.96 0.00 46.70 4.34
1923 7213 2.124736 CCATCCATGGCCGTCGTT 60.125 61.111 6.96 0.00 41.75 3.85
1924 7214 1.748879 CCATCCATGGCCGTCGTTT 60.749 57.895 6.96 0.00 41.75 3.60
1925 7215 1.312371 CCATCCATGGCCGTCGTTTT 61.312 55.000 6.96 0.00 41.75 2.43
1926 7216 0.179166 CATCCATGGCCGTCGTTTTG 60.179 55.000 6.96 0.00 0.00 2.44
1927 7217 1.933115 ATCCATGGCCGTCGTTTTGC 61.933 55.000 6.96 0.00 0.00 3.68
1928 7218 2.642129 CATGGCCGTCGTTTTGCA 59.358 55.556 0.00 0.00 0.00 4.08
1929 7219 1.729131 CATGGCCGTCGTTTTGCAC 60.729 57.895 0.00 0.00 0.00 4.57
1938 7228 2.313267 CGTTTTGCACGGTGTAGGT 58.687 52.632 10.24 0.00 45.89 3.08
1939 7229 0.233848 CGTTTTGCACGGTGTAGGTC 59.766 55.000 10.24 0.00 45.89 3.85
1940 7230 1.589803 GTTTTGCACGGTGTAGGTCT 58.410 50.000 10.24 0.00 0.00 3.85
1941 7231 1.263217 GTTTTGCACGGTGTAGGTCTG 59.737 52.381 10.24 0.00 0.00 3.51
1942 7232 0.466543 TTTGCACGGTGTAGGTCTGT 59.533 50.000 10.24 0.00 0.00 3.41
1943 7233 0.032952 TTGCACGGTGTAGGTCTGTC 59.967 55.000 10.24 0.00 0.00 3.51
1944 7234 1.110518 TGCACGGTGTAGGTCTGTCA 61.111 55.000 10.24 0.00 0.00 3.58
1945 7235 0.666577 GCACGGTGTAGGTCTGTCAC 60.667 60.000 10.24 0.00 0.00 3.67
1946 7236 0.959553 CACGGTGTAGGTCTGTCACT 59.040 55.000 0.00 0.00 33.30 3.41
1947 7237 1.340248 CACGGTGTAGGTCTGTCACTT 59.660 52.381 0.00 0.00 33.30 3.16
1948 7238 1.340248 ACGGTGTAGGTCTGTCACTTG 59.660 52.381 0.00 0.00 33.30 3.16
1949 7239 1.340248 CGGTGTAGGTCTGTCACTTGT 59.660 52.381 0.00 0.00 33.30 3.16
1950 7240 2.607282 CGGTGTAGGTCTGTCACTTGTC 60.607 54.545 0.00 0.00 33.30 3.18
1951 7241 2.628657 GGTGTAGGTCTGTCACTTGTCT 59.371 50.000 0.00 0.00 33.30 3.41
1952 7242 3.825014 GGTGTAGGTCTGTCACTTGTCTA 59.175 47.826 0.00 0.00 33.30 2.59
1953 7243 4.280174 GGTGTAGGTCTGTCACTTGTCTAA 59.720 45.833 0.00 0.00 33.30 2.10
1954 7244 5.221382 GGTGTAGGTCTGTCACTTGTCTAAA 60.221 44.000 0.00 0.00 33.30 1.85
1955 7245 5.690857 GTGTAGGTCTGTCACTTGTCTAAAC 59.309 44.000 0.00 0.00 0.00 2.01
1956 7246 5.361571 TGTAGGTCTGTCACTTGTCTAAACA 59.638 40.000 0.00 0.00 0.00 2.83
1957 7247 4.694339 AGGTCTGTCACTTGTCTAAACAC 58.306 43.478 0.00 0.00 34.35 3.32
1958 7248 4.406003 AGGTCTGTCACTTGTCTAAACACT 59.594 41.667 0.00 0.00 34.35 3.55
1959 7249 5.597182 AGGTCTGTCACTTGTCTAAACACTA 59.403 40.000 0.00 0.00 34.35 2.74
1960 7250 5.921408 GGTCTGTCACTTGTCTAAACACTAG 59.079 44.000 0.00 0.00 34.35 2.57
1961 7251 6.461231 GGTCTGTCACTTGTCTAAACACTAGT 60.461 42.308 0.00 0.00 34.35 2.57
1962 7252 7.255381 GGTCTGTCACTTGTCTAAACACTAGTA 60.255 40.741 0.00 0.00 34.35 1.82
1963 7253 7.590689 GTCTGTCACTTGTCTAAACACTAGTAC 59.409 40.741 0.00 0.00 34.35 2.73
1964 7254 7.501559 TCTGTCACTTGTCTAAACACTAGTACT 59.498 37.037 0.00 0.00 34.35 2.73
1965 7255 8.681486 TGTCACTTGTCTAAACACTAGTACTA 57.319 34.615 1.89 1.89 34.35 1.82
1966 7256 8.562892 TGTCACTTGTCTAAACACTAGTACTAC 58.437 37.037 0.00 0.00 34.35 2.73
1967 7257 8.020244 GTCACTTGTCTAAACACTAGTACTACC 58.980 40.741 0.00 0.00 34.35 3.18
1968 7258 7.720957 TCACTTGTCTAAACACTAGTACTACCA 59.279 37.037 0.00 0.00 34.35 3.25
1969 7259 8.521176 CACTTGTCTAAACACTAGTACTACCAT 58.479 37.037 0.00 0.00 34.35 3.55
1970 7260 8.738106 ACTTGTCTAAACACTAGTACTACCATC 58.262 37.037 0.00 0.00 34.35 3.51
1971 7261 8.874744 TTGTCTAAACACTAGTACTACCATCT 57.125 34.615 0.00 0.00 34.35 2.90
1972 7262 8.503458 TGTCTAAACACTAGTACTACCATCTC 57.497 38.462 0.00 0.00 0.00 2.75
1973 7263 7.555554 TGTCTAAACACTAGTACTACCATCTCC 59.444 40.741 0.00 0.00 0.00 3.71
1974 7264 7.774625 GTCTAAACACTAGTACTACCATCTCCT 59.225 40.741 0.00 0.00 0.00 3.69
1975 7265 6.777213 AAACACTAGTACTACCATCTCCTG 57.223 41.667 0.00 0.00 0.00 3.86
1976 7266 5.453866 ACACTAGTACTACCATCTCCTGT 57.546 43.478 0.00 0.00 0.00 4.00
1977 7267 5.194432 ACACTAGTACTACCATCTCCTGTG 58.806 45.833 0.00 5.19 0.00 3.66
1978 7268 4.036971 CACTAGTACTACCATCTCCTGTGC 59.963 50.000 0.00 0.00 0.00 4.57
1979 7269 3.390175 AGTACTACCATCTCCTGTGCT 57.610 47.619 0.00 0.00 0.00 4.40
1980 7270 3.714144 AGTACTACCATCTCCTGTGCTT 58.286 45.455 0.00 0.00 0.00 3.91
1981 7271 3.449018 AGTACTACCATCTCCTGTGCTTG 59.551 47.826 0.00 0.00 0.00 4.01
1982 7272 2.260822 ACTACCATCTCCTGTGCTTGT 58.739 47.619 0.00 0.00 0.00 3.16
1983 7273 2.027745 ACTACCATCTCCTGTGCTTGTG 60.028 50.000 0.00 0.00 0.00 3.33
1984 7274 0.767375 ACCATCTCCTGTGCTTGTGT 59.233 50.000 0.00 0.00 0.00 3.72
1985 7275 1.162698 CCATCTCCTGTGCTTGTGTG 58.837 55.000 0.00 0.00 0.00 3.82
1986 7276 1.544093 CCATCTCCTGTGCTTGTGTGT 60.544 52.381 0.00 0.00 0.00 3.72
1987 7277 2.224606 CATCTCCTGTGCTTGTGTGTT 58.775 47.619 0.00 0.00 0.00 3.32
1988 7278 1.953559 TCTCCTGTGCTTGTGTGTTC 58.046 50.000 0.00 0.00 0.00 3.18
1989 7279 1.486310 TCTCCTGTGCTTGTGTGTTCT 59.514 47.619 0.00 0.00 0.00 3.01
1990 7280 1.869767 CTCCTGTGCTTGTGTGTTCTC 59.130 52.381 0.00 0.00 0.00 2.87
1991 7281 1.486310 TCCTGTGCTTGTGTGTTCTCT 59.514 47.619 0.00 0.00 0.00 3.10
1992 7282 2.698274 TCCTGTGCTTGTGTGTTCTCTA 59.302 45.455 0.00 0.00 0.00 2.43
1993 7283 3.324846 TCCTGTGCTTGTGTGTTCTCTAT 59.675 43.478 0.00 0.00 0.00 1.98
1994 7284 3.681897 CCTGTGCTTGTGTGTTCTCTATC 59.318 47.826 0.00 0.00 0.00 2.08
1995 7285 4.562347 CCTGTGCTTGTGTGTTCTCTATCT 60.562 45.833 0.00 0.00 0.00 1.98
1996 7286 4.960938 TGTGCTTGTGTGTTCTCTATCTT 58.039 39.130 0.00 0.00 0.00 2.40
1997 7287 4.751600 TGTGCTTGTGTGTTCTCTATCTTG 59.248 41.667 0.00 0.00 0.00 3.02
1998 7288 4.752101 GTGCTTGTGTGTTCTCTATCTTGT 59.248 41.667 0.00 0.00 0.00 3.16
1999 7289 5.926542 GTGCTTGTGTGTTCTCTATCTTGTA 59.073 40.000 0.00 0.00 0.00 2.41
2000 7290 6.591834 GTGCTTGTGTGTTCTCTATCTTGTAT 59.408 38.462 0.00 0.00 0.00 2.29
2001 7291 7.759886 GTGCTTGTGTGTTCTCTATCTTGTATA 59.240 37.037 0.00 0.00 0.00 1.47
2002 7292 8.478066 TGCTTGTGTGTTCTCTATCTTGTATAT 58.522 33.333 0.00 0.00 0.00 0.86
2003 7293 9.967346 GCTTGTGTGTTCTCTATCTTGTATATA 57.033 33.333 0.00 0.00 0.00 0.86
2015 7305 9.140286 TCTATCTTGTATATATTTGTTGCGAGC 57.860 33.333 0.00 0.00 0.00 5.03
2016 7306 7.728847 ATCTTGTATATATTTGTTGCGAGCA 57.271 32.000 0.00 0.00 0.00 4.26
2017 7307 7.546778 TCTTGTATATATTTGTTGCGAGCAA 57.453 32.000 6.39 6.39 0.00 3.91
2032 7322 7.786178 TTGCGAGCAACTATTTCTATGTATT 57.214 32.000 6.39 0.00 0.00 1.89
2033 7323 7.408132 TGCGAGCAACTATTTCTATGTATTC 57.592 36.000 0.00 0.00 0.00 1.75
2035 7325 7.382488 TGCGAGCAACTATTTCTATGTATTCTC 59.618 37.037 0.00 0.00 0.00 2.87
2036 7326 7.596995 GCGAGCAACTATTTCTATGTATTCTCT 59.403 37.037 0.00 0.00 0.00 3.10
2037 7327 9.123709 CGAGCAACTATTTCTATGTATTCTCTC 57.876 37.037 0.00 0.00 0.00 3.20
2038 7328 9.418045 GAGCAACTATTTCTATGTATTCTCTCC 57.582 37.037 0.00 0.00 0.00 3.71
2085 7375 9.950496 ATAGAGATTTCATTATGGACCACATAC 57.050 33.333 0.00 0.00 41.61 2.39
2086 7376 6.931281 AGAGATTTCATTATGGACCACATACG 59.069 38.462 0.00 0.00 41.61 3.06
2087 7377 6.826668 AGATTTCATTATGGACCACATACGA 58.173 36.000 0.00 0.00 41.61 3.43
2088 7378 7.279615 AGATTTCATTATGGACCACATACGAA 58.720 34.615 0.00 0.00 41.61 3.85
2089 7379 7.939039 AGATTTCATTATGGACCACATACGAAT 59.061 33.333 0.00 0.00 41.61 3.34
2090 7380 6.859420 TTCATTATGGACCACATACGAATG 57.141 37.500 0.00 0.95 41.61 2.67
2092 7382 7.056844 TCATTATGGACCACATACGAATGTA 57.943 36.000 0.00 0.00 44.70 2.29
2093 7383 7.676004 TCATTATGGACCACATACGAATGTAT 58.324 34.615 0.00 0.00 44.70 2.29
2094 7384 8.808092 TCATTATGGACCACATACGAATGTATA 58.192 33.333 0.00 0.00 44.70 1.47
2095 7385 9.599866 CATTATGGACCACATACGAATGTATAT 57.400 33.333 0.00 0.00 44.70 0.86
2098 7388 8.589701 ATGGACCACATACGAATGTATATAGA 57.410 34.615 0.00 0.00 44.70 1.98
2099 7389 8.589701 TGGACCACATACGAATGTATATAGAT 57.410 34.615 0.00 0.00 44.70 1.98
2100 7390 8.466798 TGGACCACATACGAATGTATATAGATG 58.533 37.037 0.00 0.00 44.70 2.90
2101 7391 7.435488 GGACCACATACGAATGTATATAGATGC 59.565 40.741 0.00 0.00 44.70 3.91
2102 7392 7.836842 ACCACATACGAATGTATATAGATGCA 58.163 34.615 0.00 0.00 44.70 3.96
2103 7393 8.478066 ACCACATACGAATGTATATAGATGCAT 58.522 33.333 0.00 0.00 44.70 3.96
2122 7412 9.624373 AGATGCATTTTAGAGTGTAGATTCATT 57.376 29.630 0.00 0.00 0.00 2.57
2123 7413 9.875675 GATGCATTTTAGAGTGTAGATTCATTC 57.124 33.333 0.00 0.00 0.00 2.67
2124 7414 8.791327 TGCATTTTAGAGTGTAGATTCATTCA 57.209 30.769 0.00 0.00 0.00 2.57
2125 7415 9.399797 TGCATTTTAGAGTGTAGATTCATTCAT 57.600 29.630 0.00 0.00 0.00 2.57
2131 7421 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
2132 7422 8.345724 AGAGTGTAGATTCATTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
2133 7423 8.457261 AGAGTGTAGATTCATTCATTTTGCTTC 58.543 33.333 0.00 0.00 0.00 3.86
2134 7424 8.114331 AGTGTAGATTCATTCATTTTGCTTCA 57.886 30.769 0.00 0.00 0.00 3.02
2135 7425 8.746530 AGTGTAGATTCATTCATTTTGCTTCAT 58.253 29.630 0.00 0.00 0.00 2.57
2144 7434 8.623903 TCATTCATTTTGCTTCATATGTAGTCC 58.376 33.333 10.61 0.00 0.00 3.85
2145 7435 7.936496 TTCATTTTGCTTCATATGTAGTCCA 57.064 32.000 10.61 0.00 0.00 4.02
2146 7436 8.523915 TTCATTTTGCTTCATATGTAGTCCAT 57.476 30.769 10.61 0.00 37.58 3.41
2147 7437 9.625747 TTCATTTTGCTTCATATGTAGTCCATA 57.374 29.630 10.61 0.00 40.27 2.74
2148 7438 9.276590 TCATTTTGCTTCATATGTAGTCCATAG 57.723 33.333 10.61 0.00 39.36 2.23
2149 7439 9.060347 CATTTTGCTTCATATGTAGTCCATAGT 57.940 33.333 10.61 0.00 39.36 2.12
2150 7440 8.437360 TTTTGCTTCATATGTAGTCCATAGTG 57.563 34.615 10.61 0.00 39.36 2.74
2151 7441 6.976934 TGCTTCATATGTAGTCCATAGTGA 57.023 37.500 10.61 0.00 39.36 3.41
2152 7442 7.360113 TGCTTCATATGTAGTCCATAGTGAA 57.640 36.000 10.61 0.00 39.36 3.18
2153 7443 7.791029 TGCTTCATATGTAGTCCATAGTGAAA 58.209 34.615 10.61 0.00 39.36 2.69
2154 7444 8.432013 TGCTTCATATGTAGTCCATAGTGAAAT 58.568 33.333 10.61 0.00 39.36 2.17
2155 7445 8.930760 GCTTCATATGTAGTCCATAGTGAAATC 58.069 37.037 10.61 0.00 39.36 2.17
2158 7448 9.593565 TCATATGTAGTCCATAGTGAAATCTCT 57.406 33.333 1.90 0.00 39.36 3.10
2161 7451 7.260558 TGTAGTCCATAGTGAAATCTCTACG 57.739 40.000 0.00 0.00 0.00 3.51
2162 7452 7.052248 TGTAGTCCATAGTGAAATCTCTACGA 58.948 38.462 0.00 0.00 0.00 3.43
2163 7453 7.555195 TGTAGTCCATAGTGAAATCTCTACGAA 59.445 37.037 0.00 0.00 0.00 3.85
2164 7454 7.033530 AGTCCATAGTGAAATCTCTACGAAG 57.966 40.000 0.00 0.00 0.00 3.79
2165 7455 6.829298 AGTCCATAGTGAAATCTCTACGAAGA 59.171 38.462 0.00 0.00 0.00 2.87
2166 7456 6.913673 GTCCATAGTGAAATCTCTACGAAGAC 59.086 42.308 0.00 0.00 0.00 3.01
2167 7457 6.829298 TCCATAGTGAAATCTCTACGAAGACT 59.171 38.462 0.00 0.00 0.00 3.24
2168 7458 7.339721 TCCATAGTGAAATCTCTACGAAGACTT 59.660 37.037 0.00 0.00 0.00 3.01
2169 7459 8.622157 CCATAGTGAAATCTCTACGAAGACTTA 58.378 37.037 0.00 0.00 0.00 2.24
2181 7471 9.596677 CTCTACGAAGACTTATATTTAGGAACG 57.403 37.037 0.00 0.00 0.00 3.95
2182 7472 8.562892 TCTACGAAGACTTATATTTAGGAACGG 58.437 37.037 0.00 0.00 0.00 4.44
2183 7473 7.338800 ACGAAGACTTATATTTAGGAACGGA 57.661 36.000 0.00 0.00 0.00 4.69
2184 7474 7.424001 ACGAAGACTTATATTTAGGAACGGAG 58.576 38.462 0.00 0.00 0.00 4.63
2185 7475 6.862090 CGAAGACTTATATTTAGGAACGGAGG 59.138 42.308 0.00 0.00 0.00 4.30
2186 7476 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2187 7477 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2188 7478 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2189 7479 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2190 7480 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2191 7481 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2192 7482 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
2194 7484 8.912614 ATATTTAGGAACGGAGGGAGTATATT 57.087 34.615 0.00 0.00 0.00 1.28
2196 7486 8.912614 ATTTAGGAACGGAGGGAGTATATTAT 57.087 34.615 0.00 0.00 0.00 1.28
2198 7488 9.471702 TTTAGGAACGGAGGGAGTATATTATAG 57.528 37.037 0.00 0.00 0.00 1.31
2199 7489 6.433441 AGGAACGGAGGGAGTATATTATAGG 58.567 44.000 0.00 0.00 0.00 2.57
2202 7492 7.836183 GGAACGGAGGGAGTATATTATAGGTAA 59.164 40.741 0.00 0.00 0.00 2.85
2219 7509 9.774413 TTATAGGTAATTACTTTTGGAGCTAGC 57.226 33.333 15.05 6.62 0.00 3.42
2222 7512 5.886474 GGTAATTACTTTTGGAGCTAGCCTT 59.114 40.000 12.13 0.00 0.00 4.35
2224 7514 2.498644 ACTTTTGGAGCTAGCCTTCC 57.501 50.000 12.13 13.61 0.00 3.46
2227 7517 0.620556 TTTGGAGCTAGCCTTCCTGG 59.379 55.000 20.37 0.00 39.35 4.45
2228 7518 1.274703 TTGGAGCTAGCCTTCCTGGG 61.275 60.000 20.37 0.00 36.00 4.45
2232 7522 1.228094 GCTAGCCTTCCTGGGATGC 60.228 63.158 2.29 0.00 36.00 3.91
2254 7544 3.405823 AGAAAATGTTGTTGGCCATGG 57.594 42.857 6.09 7.63 0.00 3.66
2264 7554 2.041485 TGTTGGCCATGGATTCTTCTGA 59.959 45.455 18.40 0.00 0.00 3.27
2278 7568 9.096823 TGGATTCTTCTGAACCTAACTTAGTAA 57.903 33.333 0.00 0.00 34.71 2.24
2279 7569 9.589111 GGATTCTTCTGAACCTAACTTAGTAAG 57.411 37.037 8.41 8.41 34.71 2.34
2281 7571 9.930693 ATTCTTCTGAACCTAACTTAGTAAGTG 57.069 33.333 16.22 6.79 37.09 3.16
2282 7572 8.701908 TCTTCTGAACCTAACTTAGTAAGTGA 57.298 34.615 16.22 8.10 41.91 3.41
2284 7574 9.760077 CTTCTGAACCTAACTTAGTAAGTGAAA 57.240 33.333 16.22 4.84 41.91 2.69
2288 7578 9.321562 TGAACCTAACTTAGTAAGTGAAAACAG 57.678 33.333 16.22 7.05 41.91 3.16
2289 7579 8.672823 AACCTAACTTAGTAAGTGAAAACAGG 57.327 34.615 16.22 15.74 41.91 4.00
2291 7581 8.148999 ACCTAACTTAGTAAGTGAAAACAGGAG 58.851 37.037 16.22 3.66 41.91 3.69
2297 7672 6.867662 AGTAAGTGAAAACAGGAGACATTG 57.132 37.500 0.00 0.00 0.00 2.82
2320 7695 8.574251 TTGTATTGCTAGCTCAAGGATAAAAA 57.426 30.769 17.23 0.00 0.00 1.94
2356 7732 2.100749 ACACCTGCAAGCTTAAACAACC 59.899 45.455 0.00 0.00 0.00 3.77
2389 7766 8.518702 CATTAGACTATTGATTGATCGAGGAGA 58.481 37.037 0.00 0.00 0.00 3.71
2390 7767 6.325919 AGACTATTGATTGATCGAGGAGAC 57.674 41.667 0.00 0.00 0.00 3.36
2445 7827 3.502256 TGGTTCGTTAACGCTTTTACG 57.498 42.857 22.96 8.02 38.74 3.18
2485 7867 1.101049 AGTGTTTGCACCAGGGAACG 61.101 55.000 0.00 0.00 46.35 3.95
2498 7880 2.264794 GAACGGGTGCGGATCAGT 59.735 61.111 0.00 0.00 0.00 3.41
2515 7897 1.341531 CAGTGAACTCGGGAACTCAGT 59.658 52.381 0.00 0.00 0.00 3.41
2530 7912 3.722147 ACTCAGTACAGCAGTTGACAAG 58.278 45.455 0.00 0.00 0.00 3.16
2542 7924 2.287915 AGTTGACAAGCTAAAGCACACG 59.712 45.455 4.54 0.00 45.16 4.49
2615 7997 2.549282 CGCAACCTGAACGAACCG 59.451 61.111 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.143889 TGTCACCAGGGCAACATTACA 59.856 47.619 0.00 0.00 39.74 2.41
18 19 0.605319 GGCGAGTGGATTTGTCACCA 60.605 55.000 0.00 0.00 35.87 4.17
26 27 0.674895 GCAGAGTTGGCGAGTGGATT 60.675 55.000 0.00 0.00 0.00 3.01
60 61 2.427245 CGGCACTCGATCCCCTTCT 61.427 63.158 0.00 0.00 42.43 2.85
73 74 1.803334 TGGAATAAGTGTGACGGCAC 58.197 50.000 16.50 16.50 45.35 5.01
74 75 2.550606 GTTTGGAATAAGTGTGACGGCA 59.449 45.455 0.00 0.00 0.00 5.69
98 99 1.125093 TGAGTTGGGGATGACGGTGT 61.125 55.000 0.00 0.00 0.00 4.16
138 139 5.213675 GCATTGACGTGTAGATAGTAGGTC 58.786 45.833 0.00 0.00 0.00 3.85
144 145 2.102420 TGGGGCATTGACGTGTAGATAG 59.898 50.000 0.00 0.00 0.00 2.08
155 156 4.202567 GGAAACCTATATCTGGGGCATTGA 60.203 45.833 0.00 0.00 0.00 2.57
157 158 4.388577 GGAAACCTATATCTGGGGCATT 57.611 45.455 0.00 0.00 0.00 3.56
174 175 1.380302 GGCAGGAGAGCAAGGGAAA 59.620 57.895 0.00 0.00 35.83 3.13
176 177 3.393970 CGGCAGGAGAGCAAGGGA 61.394 66.667 0.00 0.00 35.83 4.20
237 238 1.540363 CCAATTATGCTAGTCCGCCGT 60.540 52.381 0.00 0.00 0.00 5.68
247 248 4.526438 AAGAAGGCTACCCAATTATGCT 57.474 40.909 0.00 0.00 0.00 3.79
251 252 3.692593 GCGAAAAGAAGGCTACCCAATTA 59.307 43.478 0.00 0.00 0.00 1.40
265 266 0.309612 GTTGCGAAAGGGCGAAAAGA 59.690 50.000 0.00 0.00 35.06 2.52
271 272 1.082104 GTTCTGTTGCGAAAGGGCG 60.082 57.895 0.00 0.00 35.06 6.13
309 310 3.470645 AGTAACTGAAACGAGCAACCT 57.529 42.857 0.00 0.00 0.00 3.50
354 355 2.803386 TGCAAACACATACACGTCGATT 59.197 40.909 0.00 0.00 0.00 3.34
426 428 4.452733 CCCGCCAACTCGTCCCTC 62.453 72.222 0.00 0.00 0.00 4.30
429 431 2.741211 GTTCCCGCCAACTCGTCC 60.741 66.667 0.00 0.00 0.00 4.79
432 434 2.752322 TACACGTTCCCGCCAACTCG 62.752 60.000 0.00 0.00 37.70 4.18
434 436 1.005394 CTACACGTTCCCGCCAACT 60.005 57.895 0.00 0.00 37.70 3.16
442 451 1.376812 CTTGCCCCCTACACGTTCC 60.377 63.158 0.00 0.00 0.00 3.62
447 456 0.611062 GGAAACCTTGCCCCCTACAC 60.611 60.000 0.00 0.00 0.00 2.90
459 468 1.303282 GGCCGGATTGAGGAAACCT 59.697 57.895 5.05 0.00 36.03 3.50
465 474 0.393077 AATCTACGGCCGGATTGAGG 59.607 55.000 31.76 8.98 31.88 3.86
470 479 3.640029 TCTAAGAAAATCTACGGCCGGAT 59.360 43.478 31.76 20.41 0.00 4.18
474 483 4.571176 CCTGTTCTAAGAAAATCTACGGCC 59.429 45.833 0.00 0.00 0.00 6.13
476 485 8.654215 GTTAACCTGTTCTAAGAAAATCTACGG 58.346 37.037 0.00 0.00 0.00 4.02
477 486 9.420551 AGTTAACCTGTTCTAAGAAAATCTACG 57.579 33.333 0.88 0.00 0.00 3.51
484 493 7.133133 ACCAGAGTTAACCTGTTCTAAGAAA 57.867 36.000 17.46 0.00 0.00 2.52
485 494 6.742559 ACCAGAGTTAACCTGTTCTAAGAA 57.257 37.500 17.46 0.00 0.00 2.52
487 496 6.522054 TGAACCAGAGTTAACCTGTTCTAAG 58.478 40.000 21.81 11.50 35.94 2.18
546 555 5.207768 CAATGATATTTAGCGCCTTGTGAC 58.792 41.667 2.29 0.00 0.00 3.67
556 565 5.273170 TCACTTTGCGCAATGATATTTAGC 58.727 37.500 34.44 0.00 0.00 3.09
741 5555 0.107263 TTGTGACAGAAGCTGTGCCA 60.107 50.000 4.60 0.00 45.44 4.92
743 5557 0.041839 CGTTGTGACAGAAGCTGTGC 60.042 55.000 4.60 0.00 45.44 4.57
759 5573 0.684153 ATGGCTGGCTTTATGGCGTT 60.684 50.000 2.00 0.00 45.14 4.84
760 5574 0.684153 AATGGCTGGCTTTATGGCGT 60.684 50.000 2.00 0.00 45.14 5.68
799 5806 1.604147 CCCGGTTGCCATTTTCTCCC 61.604 60.000 0.00 0.00 0.00 4.30
836 5971 3.633525 TGATTGCAGCTCTGTTTTTGACT 59.366 39.130 0.00 0.00 0.00 3.41
840 5975 4.500375 GGTCTTGATTGCAGCTCTGTTTTT 60.500 41.667 0.00 0.00 0.00 1.94
844 5979 1.072806 TGGTCTTGATTGCAGCTCTGT 59.927 47.619 0.00 0.00 0.00 3.41
848 5983 0.957395 CGGTGGTCTTGATTGCAGCT 60.957 55.000 0.00 0.00 0.00 4.24
853 5988 1.165270 GGTTCCGGTGGTCTTGATTG 58.835 55.000 0.00 0.00 0.00 2.67
855 5990 1.131303 TGGGTTCCGGTGGTCTTGAT 61.131 55.000 0.00 0.00 0.00 2.57
863 5998 0.757561 AGGGTTTTTGGGTTCCGGTG 60.758 55.000 0.00 0.00 0.00 4.94
865 6000 0.677288 GAAGGGTTTTTGGGTTCCGG 59.323 55.000 0.00 0.00 0.00 5.14
866 6001 1.699730 AGAAGGGTTTTTGGGTTCCG 58.300 50.000 0.00 0.00 0.00 4.30
870 6005 1.413953 GGGGAAGAAGGGTTTTTGGGT 60.414 52.381 0.00 0.00 0.00 4.51
871 6006 1.348064 GGGGAAGAAGGGTTTTTGGG 58.652 55.000 0.00 0.00 0.00 4.12
896 6128 1.071471 ACTGGTGTTTCGGCTCAGG 59.929 57.895 0.00 0.00 0.00 3.86
898 6130 1.227823 CCACTGGTGTTTCGGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
899 6131 0.951040 CTCCACTGGTGTTTCGGCTC 60.951 60.000 0.00 0.00 0.00 4.70
904 6169 2.879026 GGTTTCTCTCCACTGGTGTTTC 59.121 50.000 0.00 0.00 0.00 2.78
926 6191 0.899720 GGACGTATGGTGGTGGAGAA 59.100 55.000 0.00 0.00 0.00 2.87
928 6193 0.830648 ATGGACGTATGGTGGTGGAG 59.169 55.000 0.00 0.00 0.00 3.86
935 6200 2.464796 TGGAGGTATGGACGTATGGT 57.535 50.000 0.00 0.00 0.00 3.55
936 6201 5.677319 ATAATGGAGGTATGGACGTATGG 57.323 43.478 0.00 0.00 0.00 2.74
937 6202 7.548075 GGTAAATAATGGAGGTATGGACGTATG 59.452 40.741 0.00 0.00 0.00 2.39
938 6203 7.236019 TGGTAAATAATGGAGGTATGGACGTAT 59.764 37.037 0.00 0.00 0.00 3.06
939 6204 6.554228 TGGTAAATAATGGAGGTATGGACGTA 59.446 38.462 0.00 0.00 0.00 3.57
940 6205 5.367352 TGGTAAATAATGGAGGTATGGACGT 59.633 40.000 0.00 0.00 0.00 4.34
941 6206 5.860611 TGGTAAATAATGGAGGTATGGACG 58.139 41.667 0.00 0.00 0.00 4.79
942 6207 7.458397 TGATGGTAAATAATGGAGGTATGGAC 58.542 38.462 0.00 0.00 0.00 4.02
943 6208 7.640577 TGATGGTAAATAATGGAGGTATGGA 57.359 36.000 0.00 0.00 0.00 3.41
944 6209 6.375455 GCTGATGGTAAATAATGGAGGTATGG 59.625 42.308 0.00 0.00 0.00 2.74
945 6210 7.170965 AGCTGATGGTAAATAATGGAGGTATG 58.829 38.462 0.00 0.00 0.00 2.39
965 6252 1.250840 TGCTCGTCCAAGCTAGCTGA 61.251 55.000 20.16 9.55 42.94 4.26
978 6265 0.687757 TGCTAGATTCCCCTGCTCGT 60.688 55.000 0.00 0.00 0.00 4.18
1310 6600 4.828925 GCCAGAGCTCCACCTCGC 62.829 72.222 10.93 0.00 36.95 5.03
1346 6636 3.554692 GCGTCCGCACCTCGATTG 61.555 66.667 6.82 0.00 41.67 2.67
1347 6637 3.760035 AGCGTCCGCACCTCGATT 61.760 61.111 14.70 0.00 44.88 3.34
1384 6674 3.857854 GATGCTGAGCACGCCGTG 61.858 66.667 10.33 13.95 43.04 4.94
1397 6687 1.449353 CCTCCCAGGTAGCAGATGC 59.551 63.158 0.00 0.00 42.49 3.91
1404 6694 3.164269 ATGGCGCCTCCCAGGTAG 61.164 66.667 29.70 0.00 38.50 3.18
1500 6790 0.663688 CGATGAGGTAGACGGTGAGG 59.336 60.000 0.00 0.00 0.00 3.86
1823 7113 2.357952 TGTACATCAAGGACGGAGATCG 59.642 50.000 0.00 0.00 45.88 3.69
1864 7154 2.132996 CAACAGTGCCCTTTGCCCA 61.133 57.895 0.00 0.00 40.16 5.36
1887 7177 1.567504 GGATACATGGACCGAACGTG 58.432 55.000 0.00 0.00 0.00 4.49
1890 7180 2.550208 GGATGGGATACATGGACCGAAC 60.550 54.545 0.00 0.00 40.72 3.95
1893 7183 1.055849 TGGATGGGATACATGGACCG 58.944 55.000 0.00 0.00 40.72 4.79
1894 7184 3.077484 CATGGATGGGATACATGGACC 57.923 52.381 0.00 0.00 45.84 4.46
1907 7197 0.179166 CAAAACGACGGCCATGGATG 60.179 55.000 18.40 9.22 0.00 3.51
1908 7198 1.933115 GCAAAACGACGGCCATGGAT 61.933 55.000 18.40 0.00 0.00 3.41
1909 7199 2.622011 GCAAAACGACGGCCATGGA 61.622 57.895 18.40 0.00 0.00 3.41
1910 7200 2.126502 GCAAAACGACGGCCATGG 60.127 61.111 7.63 7.63 0.00 3.66
1911 7201 1.729131 GTGCAAAACGACGGCCATG 60.729 57.895 2.24 0.00 0.00 3.66
1912 7202 2.642700 GTGCAAAACGACGGCCAT 59.357 55.556 2.24 0.00 0.00 4.40
1921 7211 1.263217 CAGACCTACACCGTGCAAAAC 59.737 52.381 0.00 0.00 0.00 2.43
1922 7212 1.134340 ACAGACCTACACCGTGCAAAA 60.134 47.619 0.00 0.00 0.00 2.44
1923 7213 0.466543 ACAGACCTACACCGTGCAAA 59.533 50.000 0.00 0.00 0.00 3.68
1924 7214 0.032952 GACAGACCTACACCGTGCAA 59.967 55.000 0.00 0.00 0.00 4.08
1925 7215 1.110518 TGACAGACCTACACCGTGCA 61.111 55.000 0.00 0.00 0.00 4.57
1926 7216 0.666577 GTGACAGACCTACACCGTGC 60.667 60.000 0.00 0.00 0.00 5.34
1927 7217 0.959553 AGTGACAGACCTACACCGTG 59.040 55.000 0.00 0.00 35.47 4.94
1928 7218 1.340248 CAAGTGACAGACCTACACCGT 59.660 52.381 0.00 0.00 35.47 4.83
1929 7219 1.340248 ACAAGTGACAGACCTACACCG 59.660 52.381 0.00 0.00 35.47 4.94
1930 7220 2.628657 AGACAAGTGACAGACCTACACC 59.371 50.000 0.00 0.00 35.47 4.16
1931 7221 5.449107 TTAGACAAGTGACAGACCTACAC 57.551 43.478 0.00 0.00 35.15 2.90
1932 7222 5.361571 TGTTTAGACAAGTGACAGACCTACA 59.638 40.000 0.00 0.00 31.49 2.74
1933 7223 5.690857 GTGTTTAGACAAGTGACAGACCTAC 59.309 44.000 0.00 0.00 37.57 3.18
1934 7224 5.597182 AGTGTTTAGACAAGTGACAGACCTA 59.403 40.000 0.00 0.00 37.57 3.08
1935 7225 4.406003 AGTGTTTAGACAAGTGACAGACCT 59.594 41.667 0.00 0.00 37.57 3.85
1936 7226 4.694339 AGTGTTTAGACAAGTGACAGACC 58.306 43.478 0.00 0.00 37.57 3.85
1937 7227 6.505272 ACTAGTGTTTAGACAAGTGACAGAC 58.495 40.000 0.00 0.00 37.57 3.51
1938 7228 6.710597 ACTAGTGTTTAGACAAGTGACAGA 57.289 37.500 0.00 0.00 37.57 3.41
1939 7229 7.649973 AGTACTAGTGTTTAGACAAGTGACAG 58.350 38.462 5.39 0.00 37.57 3.51
1940 7230 7.578310 AGTACTAGTGTTTAGACAAGTGACA 57.422 36.000 5.39 0.00 37.57 3.58
1941 7231 8.020244 GGTAGTACTAGTGTTTAGACAAGTGAC 58.980 40.741 5.39 0.00 37.57 3.67
1942 7232 7.720957 TGGTAGTACTAGTGTTTAGACAAGTGA 59.279 37.037 5.39 0.00 37.57 3.41
1943 7233 7.879070 TGGTAGTACTAGTGTTTAGACAAGTG 58.121 38.462 5.39 0.00 37.57 3.16
1944 7234 8.647256 ATGGTAGTACTAGTGTTTAGACAAGT 57.353 34.615 5.39 0.00 37.57 3.16
1945 7235 8.958506 AGATGGTAGTACTAGTGTTTAGACAAG 58.041 37.037 5.39 0.00 37.57 3.16
1946 7236 8.874744 AGATGGTAGTACTAGTGTTTAGACAA 57.125 34.615 5.39 0.00 37.57 3.18
1947 7237 7.555554 GGAGATGGTAGTACTAGTGTTTAGACA 59.444 40.741 5.39 0.00 0.00 3.41
1948 7238 7.774625 AGGAGATGGTAGTACTAGTGTTTAGAC 59.225 40.741 5.39 0.00 0.00 2.59
1949 7239 7.774157 CAGGAGATGGTAGTACTAGTGTTTAGA 59.226 40.741 5.39 0.00 0.00 2.10
1950 7240 7.556996 ACAGGAGATGGTAGTACTAGTGTTTAG 59.443 40.741 5.39 0.00 0.00 1.85
1951 7241 7.338703 CACAGGAGATGGTAGTACTAGTGTTTA 59.661 40.741 5.39 0.00 0.00 2.01
1952 7242 6.153000 CACAGGAGATGGTAGTACTAGTGTTT 59.847 42.308 5.39 0.00 0.00 2.83
1953 7243 5.652891 CACAGGAGATGGTAGTACTAGTGTT 59.347 44.000 5.39 0.00 0.00 3.32
1954 7244 5.194432 CACAGGAGATGGTAGTACTAGTGT 58.806 45.833 5.39 0.00 0.00 3.55
1955 7245 4.036971 GCACAGGAGATGGTAGTACTAGTG 59.963 50.000 5.39 5.88 0.00 2.74
1956 7246 4.079672 AGCACAGGAGATGGTAGTACTAGT 60.080 45.833 1.87 0.00 0.00 2.57
1957 7247 4.465886 AGCACAGGAGATGGTAGTACTAG 58.534 47.826 1.87 0.00 0.00 2.57
1958 7248 4.521536 AGCACAGGAGATGGTAGTACTA 57.478 45.455 0.00 0.00 0.00 1.82
1959 7249 3.390175 AGCACAGGAGATGGTAGTACT 57.610 47.619 0.00 0.00 0.00 2.73
1960 7250 3.195825 ACAAGCACAGGAGATGGTAGTAC 59.804 47.826 0.00 0.00 0.00 2.73
1961 7251 3.195610 CACAAGCACAGGAGATGGTAGTA 59.804 47.826 0.00 0.00 0.00 1.82
1962 7252 2.027745 CACAAGCACAGGAGATGGTAGT 60.028 50.000 0.00 0.00 0.00 2.73
1963 7253 2.027745 ACACAAGCACAGGAGATGGTAG 60.028 50.000 0.00 0.00 0.00 3.18
1964 7254 1.977854 ACACAAGCACAGGAGATGGTA 59.022 47.619 0.00 0.00 0.00 3.25
1965 7255 0.767375 ACACAAGCACAGGAGATGGT 59.233 50.000 0.00 0.00 0.00 3.55
1966 7256 1.162698 CACACAAGCACAGGAGATGG 58.837 55.000 0.00 0.00 0.00 3.51
1967 7257 1.888215 ACACACAAGCACAGGAGATG 58.112 50.000 0.00 0.00 0.00 2.90
1968 7258 2.105477 AGAACACACAAGCACAGGAGAT 59.895 45.455 0.00 0.00 0.00 2.75
1969 7259 1.486310 AGAACACACAAGCACAGGAGA 59.514 47.619 0.00 0.00 0.00 3.71
1970 7260 1.869767 GAGAACACACAAGCACAGGAG 59.130 52.381 0.00 0.00 0.00 3.69
1971 7261 1.486310 AGAGAACACACAAGCACAGGA 59.514 47.619 0.00 0.00 0.00 3.86
1972 7262 1.959042 AGAGAACACACAAGCACAGG 58.041 50.000 0.00 0.00 0.00 4.00
1973 7263 4.564041 AGATAGAGAACACACAAGCACAG 58.436 43.478 0.00 0.00 0.00 3.66
1974 7264 4.607293 AGATAGAGAACACACAAGCACA 57.393 40.909 0.00 0.00 0.00 4.57
1975 7265 4.752101 ACAAGATAGAGAACACACAAGCAC 59.248 41.667 0.00 0.00 0.00 4.40
1976 7266 4.960938 ACAAGATAGAGAACACACAAGCA 58.039 39.130 0.00 0.00 0.00 3.91
1977 7267 8.879342 ATATACAAGATAGAGAACACACAAGC 57.121 34.615 0.00 0.00 0.00 4.01
1989 7279 9.140286 GCTCGCAACAAATATATACAAGATAGA 57.860 33.333 0.00 0.00 0.00 1.98
1990 7280 8.925700 TGCTCGCAACAAATATATACAAGATAG 58.074 33.333 0.00 0.00 0.00 2.08
1991 7281 8.825667 TGCTCGCAACAAATATATACAAGATA 57.174 30.769 0.00 0.00 0.00 1.98
1992 7282 7.728847 TGCTCGCAACAAATATATACAAGAT 57.271 32.000 0.00 0.00 0.00 2.40
1993 7283 7.546778 TTGCTCGCAACAAATATATACAAGA 57.453 32.000 0.00 0.00 0.00 3.02
2008 7298 7.710907 AGAATACATAGAAATAGTTGCTCGCAA 59.289 33.333 0.00 0.00 0.00 4.85
2009 7299 7.210174 AGAATACATAGAAATAGTTGCTCGCA 58.790 34.615 0.00 0.00 0.00 5.10
2010 7300 7.596995 AGAGAATACATAGAAATAGTTGCTCGC 59.403 37.037 0.00 0.00 0.00 5.03
2011 7301 9.123709 GAGAGAATACATAGAAATAGTTGCTCG 57.876 37.037 0.00 0.00 0.00 5.03
2012 7302 9.418045 GGAGAGAATACATAGAAATAGTTGCTC 57.582 37.037 0.00 0.00 0.00 4.26
2013 7303 9.153479 AGGAGAGAATACATAGAAATAGTTGCT 57.847 33.333 0.00 0.00 0.00 3.91
2014 7304 9.771534 AAGGAGAGAATACATAGAAATAGTTGC 57.228 33.333 0.00 0.00 0.00 4.17
2059 7349 9.950496 GTATGTGGTCCATAATGAAATCTCTAT 57.050 33.333 0.00 0.00 37.77 1.98
2060 7350 8.088365 CGTATGTGGTCCATAATGAAATCTCTA 58.912 37.037 0.00 0.00 37.77 2.43
2061 7351 6.931281 CGTATGTGGTCCATAATGAAATCTCT 59.069 38.462 0.00 0.00 37.77 3.10
2062 7352 6.929049 TCGTATGTGGTCCATAATGAAATCTC 59.071 38.462 0.00 0.00 37.77 2.75
2063 7353 6.826668 TCGTATGTGGTCCATAATGAAATCT 58.173 36.000 0.00 0.00 37.77 2.40
2064 7354 7.490962 TTCGTATGTGGTCCATAATGAAATC 57.509 36.000 0.00 0.00 37.77 2.17
2065 7355 7.502226 ACATTCGTATGTGGTCCATAATGAAAT 59.498 33.333 6.89 0.00 43.29 2.17
2066 7356 6.826231 ACATTCGTATGTGGTCCATAATGAAA 59.174 34.615 6.89 0.00 43.29 2.69
2067 7357 6.353323 ACATTCGTATGTGGTCCATAATGAA 58.647 36.000 6.89 1.74 43.29 2.57
2068 7358 5.924356 ACATTCGTATGTGGTCCATAATGA 58.076 37.500 6.89 0.00 43.29 2.57
2069 7359 7.905604 ATACATTCGTATGTGGTCCATAATG 57.094 36.000 16.91 1.01 44.56 1.90
2072 7362 9.689501 TCTATATACATTCGTATGTGGTCCATA 57.310 33.333 16.91 7.34 44.56 2.74
2073 7363 8.589701 TCTATATACATTCGTATGTGGTCCAT 57.410 34.615 16.91 5.45 44.56 3.41
2074 7364 8.466798 CATCTATATACATTCGTATGTGGTCCA 58.533 37.037 16.91 0.00 44.56 4.02
2075 7365 7.435488 GCATCTATATACATTCGTATGTGGTCC 59.565 40.741 16.91 0.00 44.56 4.46
2076 7366 7.973944 TGCATCTATATACATTCGTATGTGGTC 59.026 37.037 16.91 0.00 44.56 4.02
2077 7367 7.836842 TGCATCTATATACATTCGTATGTGGT 58.163 34.615 16.91 8.59 44.56 4.16
2078 7368 8.877808 ATGCATCTATATACATTCGTATGTGG 57.122 34.615 16.91 3.59 44.56 4.17
2096 7386 9.624373 AATGAATCTACACTCTAAAATGCATCT 57.376 29.630 0.00 0.00 0.00 2.90
2097 7387 9.875675 GAATGAATCTACACTCTAAAATGCATC 57.124 33.333 0.00 0.00 0.00 3.91
2098 7388 9.399797 TGAATGAATCTACACTCTAAAATGCAT 57.600 29.630 0.00 0.00 0.00 3.96
2099 7389 8.791327 TGAATGAATCTACACTCTAAAATGCA 57.209 30.769 0.00 0.00 0.00 3.96
2105 7395 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2106 7396 9.453572 AAGCAAAATGAATGAATCTACACTCTA 57.546 29.630 0.00 0.00 0.00 2.43
2107 7397 7.934855 AGCAAAATGAATGAATCTACACTCT 57.065 32.000 0.00 0.00 0.00 3.24
2108 7398 8.239314 TGAAGCAAAATGAATGAATCTACACTC 58.761 33.333 0.00 0.00 0.00 3.51
2109 7399 8.114331 TGAAGCAAAATGAATGAATCTACACT 57.886 30.769 0.00 0.00 0.00 3.55
2110 7400 8.922058 ATGAAGCAAAATGAATGAATCTACAC 57.078 30.769 0.00 0.00 0.00 2.90
2118 7408 8.623903 GGACTACATATGAAGCAAAATGAATGA 58.376 33.333 10.38 0.00 0.00 2.57
2119 7409 8.407832 TGGACTACATATGAAGCAAAATGAATG 58.592 33.333 10.38 0.00 0.00 2.67
2120 7410 8.523915 TGGACTACATATGAAGCAAAATGAAT 57.476 30.769 10.38 0.00 0.00 2.57
2121 7411 7.936496 TGGACTACATATGAAGCAAAATGAA 57.064 32.000 10.38 0.00 0.00 2.57
2122 7412 9.276590 CTATGGACTACATATGAAGCAAAATGA 57.723 33.333 10.38 0.00 41.07 2.57
2123 7413 9.060347 ACTATGGACTACATATGAAGCAAAATG 57.940 33.333 10.38 0.00 41.07 2.32
2124 7414 9.060347 CACTATGGACTACATATGAAGCAAAAT 57.940 33.333 10.38 0.00 41.07 1.82
2125 7415 8.264347 TCACTATGGACTACATATGAAGCAAAA 58.736 33.333 10.38 0.00 41.07 2.44
2126 7416 7.791029 TCACTATGGACTACATATGAAGCAAA 58.209 34.615 10.38 0.00 41.07 3.68
2127 7417 7.360113 TCACTATGGACTACATATGAAGCAA 57.640 36.000 10.38 0.00 41.07 3.91
2128 7418 6.976934 TCACTATGGACTACATATGAAGCA 57.023 37.500 10.38 0.00 41.07 3.91
2129 7419 8.839310 ATTTCACTATGGACTACATATGAAGC 57.161 34.615 10.38 0.00 41.07 3.86
2132 7422 9.593565 AGAGATTTCACTATGGACTACATATGA 57.406 33.333 10.38 0.00 41.07 2.15
2135 7425 9.000486 CGTAGAGATTTCACTATGGACTACATA 58.000 37.037 0.00 0.00 41.03 2.29
2136 7426 7.720074 TCGTAGAGATTTCACTATGGACTACAT 59.280 37.037 0.00 0.00 43.68 2.29
2137 7427 7.052248 TCGTAGAGATTTCACTATGGACTACA 58.948 38.462 0.00 0.00 30.34 2.74
2138 7428 7.493743 TCGTAGAGATTTCACTATGGACTAC 57.506 40.000 0.00 0.00 30.34 2.73
2139 7429 7.991460 TCTTCGTAGAGATTTCACTATGGACTA 59.009 37.037 4.96 0.00 38.43 2.59
2140 7430 6.829298 TCTTCGTAGAGATTTCACTATGGACT 59.171 38.462 4.96 0.00 38.43 3.85
2141 7431 6.913673 GTCTTCGTAGAGATTTCACTATGGAC 59.086 42.308 0.00 2.91 38.43 4.02
2142 7432 6.829298 AGTCTTCGTAGAGATTTCACTATGGA 59.171 38.462 0.00 0.00 38.43 3.41
2143 7433 7.033530 AGTCTTCGTAGAGATTTCACTATGG 57.966 40.000 0.00 0.00 38.43 2.74
2155 7445 9.596677 CGTTCCTAAATATAAGTCTTCGTAGAG 57.403 37.037 0.00 0.00 38.43 2.43
2156 7446 8.562892 CCGTTCCTAAATATAAGTCTTCGTAGA 58.437 37.037 0.00 0.00 0.00 2.59
2157 7447 8.562892 TCCGTTCCTAAATATAAGTCTTCGTAG 58.437 37.037 0.00 0.00 0.00 3.51
2158 7448 8.450578 TCCGTTCCTAAATATAAGTCTTCGTA 57.549 34.615 0.00 0.00 0.00 3.43
2159 7449 7.338800 TCCGTTCCTAAATATAAGTCTTCGT 57.661 36.000 0.00 0.00 0.00 3.85
2160 7450 6.862090 CCTCCGTTCCTAAATATAAGTCTTCG 59.138 42.308 0.00 0.00 0.00 3.79
2161 7451 7.015001 TCCCTCCGTTCCTAAATATAAGTCTTC 59.985 40.741 0.00 0.00 0.00 2.87
2162 7452 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2163 7453 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2164 7454 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2165 7455 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2166 7456 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2169 7459 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2171 7461 8.912614 ATAATATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
2172 7462 9.471702 CTATAATATACTCCCTCCGTTCCTAAA 57.528 37.037 0.00 0.00 0.00 1.85
2173 7463 8.057623 CCTATAATATACTCCCTCCGTTCCTAA 58.942 40.741 0.00 0.00 0.00 2.69
2174 7464 7.185304 ACCTATAATATACTCCCTCCGTTCCTA 59.815 40.741 0.00 0.00 0.00 2.94
2175 7465 6.010918 ACCTATAATATACTCCCTCCGTTCCT 60.011 42.308 0.00 0.00 0.00 3.36
2176 7466 6.193504 ACCTATAATATACTCCCTCCGTTCC 58.806 44.000 0.00 0.00 0.00 3.62
2177 7467 8.814038 TTACCTATAATATACTCCCTCCGTTC 57.186 38.462 0.00 0.00 0.00 3.95
2178 7468 9.779951 AATTACCTATAATATACTCCCTCCGTT 57.220 33.333 0.00 0.00 30.42 4.44
2193 7483 9.774413 GCTAGCTCCAAAAGTAATTACCTATAA 57.226 33.333 12.05 0.00 0.00 0.98
2194 7484 8.373220 GGCTAGCTCCAAAAGTAATTACCTATA 58.627 37.037 15.72 0.00 0.00 1.31
2195 7485 7.072581 AGGCTAGCTCCAAAAGTAATTACCTAT 59.927 37.037 15.72 0.00 0.00 2.57
2196 7486 6.386050 AGGCTAGCTCCAAAAGTAATTACCTA 59.614 38.462 15.72 3.46 0.00 3.08
2197 7487 5.191921 AGGCTAGCTCCAAAAGTAATTACCT 59.808 40.000 15.72 0.00 0.00 3.08
2198 7488 5.437946 AGGCTAGCTCCAAAAGTAATTACC 58.562 41.667 15.72 0.00 0.00 2.85
2199 7489 6.038382 GGAAGGCTAGCTCCAAAAGTAATTAC 59.962 42.308 15.72 7.57 0.00 1.89
2202 7492 4.228438 AGGAAGGCTAGCTCCAAAAGTAAT 59.772 41.667 21.53 0.00 33.83 1.89
2214 7504 1.228094 GCATCCCAGGAAGGCTAGC 60.228 63.158 6.04 6.04 35.39 3.42
2219 7509 2.220653 TTTCTTGCATCCCAGGAAGG 57.779 50.000 0.00 0.00 40.16 3.46
2222 7512 3.173953 ACATTTTCTTGCATCCCAGGA 57.826 42.857 0.00 0.00 0.00 3.86
2224 7514 4.261578 ACAACATTTTCTTGCATCCCAG 57.738 40.909 0.00 0.00 0.00 4.45
2227 7517 3.187022 GCCAACAACATTTTCTTGCATCC 59.813 43.478 0.00 0.00 0.00 3.51
2228 7518 3.187022 GGCCAACAACATTTTCTTGCATC 59.813 43.478 0.00 0.00 0.00 3.91
2232 7522 3.499157 CCATGGCCAACAACATTTTCTTG 59.501 43.478 10.96 0.00 0.00 3.02
2264 7554 8.488668 TCCTGTTTTCACTTACTAAGTTAGGTT 58.511 33.333 14.36 0.00 40.46 3.50
2278 7568 6.294176 GCAATACAATGTCTCCTGTTTTCACT 60.294 38.462 0.00 0.00 0.00 3.41
2279 7569 5.858581 GCAATACAATGTCTCCTGTTTTCAC 59.141 40.000 0.00 0.00 0.00 3.18
2280 7570 5.769662 AGCAATACAATGTCTCCTGTTTTCA 59.230 36.000 0.00 0.00 0.00 2.69
2281 7571 6.259550 AGCAATACAATGTCTCCTGTTTTC 57.740 37.500 0.00 0.00 0.00 2.29
2282 7572 6.127897 GCTAGCAATACAATGTCTCCTGTTTT 60.128 38.462 10.63 0.00 0.00 2.43
2284 7574 4.878397 GCTAGCAATACAATGTCTCCTGTT 59.122 41.667 10.63 0.00 0.00 3.16
2285 7575 4.163078 AGCTAGCAATACAATGTCTCCTGT 59.837 41.667 18.83 0.00 0.00 4.00
2288 7578 4.697514 TGAGCTAGCAATACAATGTCTCC 58.302 43.478 18.83 0.00 0.00 3.71
2289 7579 5.236047 CCTTGAGCTAGCAATACAATGTCTC 59.764 44.000 18.83 1.20 0.00 3.36
2291 7581 5.118990 TCCTTGAGCTAGCAATACAATGTC 58.881 41.667 18.83 2.54 0.00 3.06
2320 7695 1.047801 GGTGTGGGCAGGTTTTCATT 58.952 50.000 0.00 0.00 0.00 2.57
2322 7697 0.754957 CAGGTGTGGGCAGGTTTTCA 60.755 55.000 0.00 0.00 0.00 2.69
2356 7732 7.889589 TCAATCAATAGTCTAATGTATGGCG 57.110 36.000 0.00 0.00 0.00 5.69
2389 7766 3.230976 TCAGTCATGTGTACCTCTGTGT 58.769 45.455 0.00 0.00 0.00 3.72
2390 7767 3.507622 TCTCAGTCATGTGTACCTCTGTG 59.492 47.826 0.00 0.00 0.00 3.66
2445 7827 0.376152 CAGTGGCGATTCTGTGATGC 59.624 55.000 0.00 0.00 0.00 3.91
2481 7863 2.100631 CACTGATCCGCACCCGTTC 61.101 63.158 0.00 0.00 0.00 3.95
2485 7867 0.741221 GAGTTCACTGATCCGCACCC 60.741 60.000 0.00 0.00 0.00 4.61
2498 7880 2.557056 CTGTACTGAGTTCCCGAGTTCA 59.443 50.000 0.00 0.00 0.00 3.18
2515 7897 3.498397 GCTTTAGCTTGTCAACTGCTGTA 59.502 43.478 9.07 0.00 37.62 2.74
2549 7931 1.881973 TGACAAGGCATTTCAGTGCTC 59.118 47.619 0.00 0.00 44.45 4.26
2615 7997 3.067833 GAGCAAGTCTTGTAGTTGGACC 58.932 50.000 14.03 0.00 38.71 4.46



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.