Multiple sequence alignment - TraesCS2D01G184800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G184800 chr2D 100.000 2546 0 0 1 2546 129946661 129944116 0.000000e+00 4702
1 TraesCS2D01G184800 chr2D 96.711 973 29 2 1577 2546 293151864 293150892 0.000000e+00 1616
2 TraesCS2D01G184800 chr2D 81.293 433 52 14 797 1217 129839799 129839384 8.790000e-85 324
3 TraesCS2D01G184800 chr2D 77.186 469 59 23 789 1217 131161645 131162105 1.970000e-56 230
4 TraesCS2D01G184800 chr5D 97.325 972 24 1 1577 2546 544156409 544157380 0.000000e+00 1650
5 TraesCS2D01G184800 chr5D 97.231 975 24 2 1575 2546 496196481 496197455 0.000000e+00 1648
6 TraesCS2D01G184800 chr5D 97.020 973 26 2 1577 2546 480982984 480982012 0.000000e+00 1633
7 TraesCS2D01G184800 chr5D 96.516 976 30 3 1574 2546 386063942 386062968 0.000000e+00 1611
8 TraesCS2D01G184800 chr5D 98.625 291 3 1 4 294 361590384 361590095 4.860000e-142 514
9 TraesCS2D01G184800 chr5D 96.815 157 4 1 291 446 361588868 361588712 6.990000e-66 261
10 TraesCS2D01G184800 chr7D 96.920 974 28 1 1575 2546 4651658 4650685 0.000000e+00 1631
11 TraesCS2D01G184800 chr7D 96.817 974 28 2 1576 2546 489125469 489124496 0.000000e+00 1624
12 TraesCS2D01G184800 chr7D 90.230 348 30 3 449 794 600257155 600257500 3.860000e-123 451
13 TraesCS2D01G184800 chr4D 96.814 973 28 2 1577 2546 34653017 34653989 0.000000e+00 1622
14 TraesCS2D01G184800 chr4D 93.452 336 20 2 449 784 448164766 448165099 4.890000e-137 497
15 TraesCS2D01G184800 chr1D 96.711 973 29 2 1577 2546 475846846 475847818 0.000000e+00 1616
16 TraesCS2D01G184800 chr1D 88.920 361 34 5 449 805 138203142 138203500 8.360000e-120 440
17 TraesCS2D01G184800 chr2B 86.369 807 48 16 793 1576 183263327 183262560 0.000000e+00 824
18 TraesCS2D01G184800 chr2B 81.227 277 26 11 967 1217 184661046 184661322 1.540000e-47 200
19 TraesCS2D01G184800 chr2B 90.816 98 9 0 1106 1203 794021056 794020959 5.720000e-27 132
20 TraesCS2D01G184800 chr1A 91.034 435 27 8 4 437 497216967 497216544 6.110000e-161 577
21 TraesCS2D01G184800 chr1A 74.710 431 58 31 25 446 403663561 403663173 7.340000e-31 145
22 TraesCS2D01G184800 chr3D 91.594 345 25 3 449 791 495301529 495301871 8.240000e-130 473
23 TraesCS2D01G184800 chr2A 91.304 345 27 2 449 791 2337745 2337402 3.840000e-128 468
24 TraesCS2D01G184800 chr2A 77.056 462 39 23 967 1363 137256256 137256715 1.190000e-48 204
25 TraesCS2D01G184800 chr3B 91.014 345 26 3 449 791 459410548 459410207 6.420000e-126 460
26 TraesCS2D01G184800 chr3B 90.517 348 30 2 449 794 829557847 829558193 8.300000e-125 457
27 TraesCS2D01G184800 chr7B 90.751 346 28 3 449 792 694533254 694532911 2.310000e-125 459
28 TraesCS2D01G184800 chr6D 91.150 339 27 2 449 785 433213824 433213487 8.300000e-125 457
29 TraesCS2D01G184800 chr4B 90.179 112 11 0 1106 1217 668616336 668616225 2.040000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G184800 chr2D 129944116 129946661 2545 True 4702.0 4702 100.000 1 2546 1 chr2D.!!$R2 2545
1 TraesCS2D01G184800 chr2D 293150892 293151864 972 True 1616.0 1616 96.711 1577 2546 1 chr2D.!!$R3 969
2 TraesCS2D01G184800 chr5D 544156409 544157380 971 False 1650.0 1650 97.325 1577 2546 1 chr5D.!!$F2 969
3 TraesCS2D01G184800 chr5D 496196481 496197455 974 False 1648.0 1648 97.231 1575 2546 1 chr5D.!!$F1 971
4 TraesCS2D01G184800 chr5D 480982012 480982984 972 True 1633.0 1633 97.020 1577 2546 1 chr5D.!!$R2 969
5 TraesCS2D01G184800 chr5D 386062968 386063942 974 True 1611.0 1611 96.516 1574 2546 1 chr5D.!!$R1 972
6 TraesCS2D01G184800 chr5D 361588712 361590384 1672 True 387.5 514 97.720 4 446 2 chr5D.!!$R3 442
7 TraesCS2D01G184800 chr7D 4650685 4651658 973 True 1631.0 1631 96.920 1575 2546 1 chr7D.!!$R1 971
8 TraesCS2D01G184800 chr7D 489124496 489125469 973 True 1624.0 1624 96.817 1576 2546 1 chr7D.!!$R2 970
9 TraesCS2D01G184800 chr4D 34653017 34653989 972 False 1622.0 1622 96.814 1577 2546 1 chr4D.!!$F1 969
10 TraesCS2D01G184800 chr1D 475846846 475847818 972 False 1616.0 1616 96.711 1577 2546 1 chr1D.!!$F2 969
11 TraesCS2D01G184800 chr2B 183262560 183263327 767 True 824.0 824 86.369 793 1576 1 chr2B.!!$R1 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 1810 0.107703 TGATTGGAGGCTACGGCAAG 60.108 55.0 0.00 0.00 40.87 4.01 F
757 1989 0.108851 CCGGGTGCAATGCTTAAACC 60.109 55.0 6.82 5.28 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 2727 0.179145 ATAAGGTCGCACGAAGGTCG 60.179 55.0 0.00 0.0 46.93 4.79 R
2175 3433 1.033746 TCGTCTACGATGTGTCCCCC 61.034 60.0 0.14 0.0 44.22 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
226 227 0.409484 AACTAGGCCAGGCAAATGGT 59.591 50.000 15.19 3.62 42.75 3.55
393 1625 0.460459 TCGAGATCTGACGACGCTCT 60.460 55.000 0.00 0.00 33.62 4.09
446 1678 4.377021 GGTGTGCCAGATACATTTATCGA 58.623 43.478 0.00 0.00 39.43 3.59
447 1679 4.211374 GGTGTGCCAGATACATTTATCGAC 59.789 45.833 0.00 0.00 39.43 4.20
448 1680 4.048504 TGTGCCAGATACATTTATCGACG 58.951 43.478 0.00 0.00 39.43 5.12
449 1681 4.202070 TGTGCCAGATACATTTATCGACGA 60.202 41.667 0.00 0.00 39.43 4.20
450 1682 4.923871 GTGCCAGATACATTTATCGACGAT 59.076 41.667 15.74 15.74 39.43 3.73
451 1683 6.090783 GTGCCAGATACATTTATCGACGATA 58.909 40.000 13.47 13.47 39.43 2.92
452 1684 6.584942 GTGCCAGATACATTTATCGACGATAA 59.415 38.462 23.03 23.03 39.43 1.75
453 1685 7.115805 GTGCCAGATACATTTATCGACGATAAA 59.884 37.037 33.41 33.41 44.88 1.40
454 1686 7.654116 TGCCAGATACATTTATCGACGATAAAA 59.346 33.333 34.35 23.79 44.28 1.52
455 1687 8.492748 GCCAGATACATTTATCGACGATAAAAA 58.507 33.333 34.35 25.57 44.28 1.94
469 1701 8.965172 TCGACGATAAAAATACTTCTCTTATGC 58.035 33.333 0.00 0.00 0.00 3.14
470 1702 8.752254 CGACGATAAAAATACTTCTCTTATGCA 58.248 33.333 0.00 0.00 0.00 3.96
472 1704 9.046296 ACGATAAAAATACTTCTCTTATGCAGG 57.954 33.333 0.00 0.00 0.00 4.85
473 1705 9.046296 CGATAAAAATACTTCTCTTATGCAGGT 57.954 33.333 0.00 0.00 0.00 4.00
481 1713 7.661536 ACTTCTCTTATGCAGGTTATCTACA 57.338 36.000 0.00 0.00 0.00 2.74
482 1714 8.079211 ACTTCTCTTATGCAGGTTATCTACAA 57.921 34.615 0.00 0.00 0.00 2.41
483 1715 8.540388 ACTTCTCTTATGCAGGTTATCTACAAA 58.460 33.333 0.00 0.00 0.00 2.83
484 1716 9.553064 CTTCTCTTATGCAGGTTATCTACAAAT 57.447 33.333 0.00 0.00 0.00 2.32
485 1717 8.893219 TCTCTTATGCAGGTTATCTACAAATG 57.107 34.615 0.00 0.00 0.00 2.32
486 1718 8.486210 TCTCTTATGCAGGTTATCTACAAATGT 58.514 33.333 0.00 0.00 0.00 2.71
487 1719 9.764363 CTCTTATGCAGGTTATCTACAAATGTA 57.236 33.333 0.00 0.00 0.00 2.29
488 1720 9.542462 TCTTATGCAGGTTATCTACAAATGTAC 57.458 33.333 0.00 0.00 0.00 2.90
489 1721 8.671384 TTATGCAGGTTATCTACAAATGTACC 57.329 34.615 0.00 0.00 0.00 3.34
490 1722 5.113383 TGCAGGTTATCTACAAATGTACCG 58.887 41.667 0.00 0.00 0.00 4.02
491 1723 4.510340 GCAGGTTATCTACAAATGTACCGG 59.490 45.833 0.00 0.00 0.00 5.28
492 1724 5.054477 CAGGTTATCTACAAATGTACCGGG 58.946 45.833 6.32 0.00 0.00 5.73
493 1725 4.964262 AGGTTATCTACAAATGTACCGGGA 59.036 41.667 6.32 0.00 0.00 5.14
494 1726 5.605488 AGGTTATCTACAAATGTACCGGGAT 59.395 40.000 6.32 0.00 0.00 3.85
495 1727 6.100714 AGGTTATCTACAAATGTACCGGGATT 59.899 38.462 6.32 0.00 0.00 3.01
496 1728 6.426025 GGTTATCTACAAATGTACCGGGATTC 59.574 42.308 6.32 0.00 0.00 2.52
497 1729 5.888982 ATCTACAAATGTACCGGGATTCT 57.111 39.130 6.32 0.00 0.00 2.40
498 1730 5.687166 TCTACAAATGTACCGGGATTCTT 57.313 39.130 6.32 0.00 0.00 2.52
499 1731 6.057321 TCTACAAATGTACCGGGATTCTTT 57.943 37.500 6.32 0.00 0.00 2.52
500 1732 5.878116 TCTACAAATGTACCGGGATTCTTTG 59.122 40.000 6.32 11.38 0.00 2.77
501 1733 3.761752 ACAAATGTACCGGGATTCTTTGG 59.238 43.478 17.70 1.08 0.00 3.28
502 1734 3.732048 AATGTACCGGGATTCTTTGGT 57.268 42.857 6.32 0.00 38.51 3.67
503 1735 3.732048 ATGTACCGGGATTCTTTGGTT 57.268 42.857 6.32 0.00 35.93 3.67
504 1736 4.847990 ATGTACCGGGATTCTTTGGTTA 57.152 40.909 6.32 0.00 35.93 2.85
505 1737 4.847990 TGTACCGGGATTCTTTGGTTAT 57.152 40.909 6.32 0.00 35.93 1.89
506 1738 4.519213 TGTACCGGGATTCTTTGGTTATG 58.481 43.478 6.32 0.00 35.93 1.90
507 1739 3.012934 ACCGGGATTCTTTGGTTATGG 57.987 47.619 6.32 0.00 0.00 2.74
508 1740 2.310647 ACCGGGATTCTTTGGTTATGGT 59.689 45.455 6.32 0.00 0.00 3.55
509 1741 2.949644 CCGGGATTCTTTGGTTATGGTC 59.050 50.000 0.00 0.00 0.00 4.02
510 1742 2.949644 CGGGATTCTTTGGTTATGGTCC 59.050 50.000 0.00 0.00 0.00 4.46
511 1743 3.371595 CGGGATTCTTTGGTTATGGTCCT 60.372 47.826 0.00 0.00 0.00 3.85
512 1744 4.207955 GGGATTCTTTGGTTATGGTCCTC 58.792 47.826 0.00 0.00 0.00 3.71
513 1745 4.079730 GGGATTCTTTGGTTATGGTCCTCT 60.080 45.833 0.00 0.00 0.00 3.69
514 1746 5.126779 GGATTCTTTGGTTATGGTCCTCTC 58.873 45.833 0.00 0.00 0.00 3.20
515 1747 5.104318 GGATTCTTTGGTTATGGTCCTCTCT 60.104 44.000 0.00 0.00 0.00 3.10
516 1748 6.099845 GGATTCTTTGGTTATGGTCCTCTCTA 59.900 42.308 0.00 0.00 0.00 2.43
517 1749 5.934402 TCTTTGGTTATGGTCCTCTCTAC 57.066 43.478 0.00 0.00 0.00 2.59
518 1750 5.338632 TCTTTGGTTATGGTCCTCTCTACA 58.661 41.667 0.00 0.00 0.00 2.74
519 1751 5.783360 TCTTTGGTTATGGTCCTCTCTACAA 59.217 40.000 0.00 0.00 0.00 2.41
520 1752 5.416271 TTGGTTATGGTCCTCTCTACAAC 57.584 43.478 0.00 0.00 0.00 3.32
521 1753 3.446161 TGGTTATGGTCCTCTCTACAACG 59.554 47.826 0.00 0.00 0.00 4.10
522 1754 3.698040 GGTTATGGTCCTCTCTACAACGA 59.302 47.826 0.00 0.00 0.00 3.85
523 1755 4.202030 GGTTATGGTCCTCTCTACAACGAG 60.202 50.000 0.00 0.00 0.00 4.18
524 1756 2.581216 TGGTCCTCTCTACAACGAGT 57.419 50.000 0.00 0.00 32.83 4.18
525 1757 2.160205 TGGTCCTCTCTACAACGAGTG 58.840 52.381 0.00 0.00 32.83 3.51
526 1758 2.224695 TGGTCCTCTCTACAACGAGTGA 60.225 50.000 0.00 0.00 32.83 3.41
527 1759 2.818432 GGTCCTCTCTACAACGAGTGAA 59.182 50.000 0.00 0.00 32.83 3.18
528 1760 3.119779 GGTCCTCTCTACAACGAGTGAAG 60.120 52.174 0.00 0.00 32.83 3.02
529 1761 3.752222 GTCCTCTCTACAACGAGTGAAGA 59.248 47.826 0.00 0.00 32.83 2.87
530 1762 4.215827 GTCCTCTCTACAACGAGTGAAGAA 59.784 45.833 0.00 0.00 32.83 2.52
531 1763 5.010933 TCCTCTCTACAACGAGTGAAGAAT 58.989 41.667 0.00 0.00 32.83 2.40
532 1764 5.124138 TCCTCTCTACAACGAGTGAAGAATC 59.876 44.000 0.00 0.00 32.83 2.52
533 1765 4.971008 TCTCTACAACGAGTGAAGAATCG 58.029 43.478 0.00 0.00 44.36 3.34
534 1766 4.694037 TCTCTACAACGAGTGAAGAATCGA 59.306 41.667 1.13 0.00 41.40 3.59
535 1767 4.971008 TCTACAACGAGTGAAGAATCGAG 58.029 43.478 1.13 0.00 41.40 4.04
536 1768 3.917329 ACAACGAGTGAAGAATCGAGA 57.083 42.857 1.13 0.00 41.40 4.04
537 1769 3.566523 ACAACGAGTGAAGAATCGAGAC 58.433 45.455 1.13 0.00 41.40 3.36
538 1770 2.917971 CAACGAGTGAAGAATCGAGACC 59.082 50.000 1.13 0.00 41.40 3.85
539 1771 2.438411 ACGAGTGAAGAATCGAGACCT 58.562 47.619 1.13 0.00 41.40 3.85
540 1772 2.162608 ACGAGTGAAGAATCGAGACCTG 59.837 50.000 1.13 0.00 41.40 4.00
541 1773 2.162608 CGAGTGAAGAATCGAGACCTGT 59.837 50.000 0.00 0.00 41.40 4.00
542 1774 3.366476 CGAGTGAAGAATCGAGACCTGTT 60.366 47.826 0.00 0.00 41.40 3.16
543 1775 4.561105 GAGTGAAGAATCGAGACCTGTTT 58.439 43.478 0.00 0.00 0.00 2.83
544 1776 5.619309 CGAGTGAAGAATCGAGACCTGTTTA 60.619 44.000 0.00 0.00 41.40 2.01
545 1777 5.471257 AGTGAAGAATCGAGACCTGTTTAC 58.529 41.667 0.00 0.00 0.00 2.01
546 1778 4.323868 GTGAAGAATCGAGACCTGTTTACG 59.676 45.833 0.00 0.00 0.00 3.18
547 1779 3.505464 AGAATCGAGACCTGTTTACGG 57.495 47.619 0.00 0.00 0.00 4.02
548 1780 3.087031 AGAATCGAGACCTGTTTACGGA 58.913 45.455 0.00 0.00 0.00 4.69
549 1781 3.128938 AGAATCGAGACCTGTTTACGGAG 59.871 47.826 0.00 0.00 0.00 4.63
550 1782 1.171308 TCGAGACCTGTTTACGGAGG 58.829 55.000 0.00 0.00 35.26 4.30
551 1783 0.886563 CGAGACCTGTTTACGGAGGT 59.113 55.000 0.00 0.00 45.73 3.85
552 1784 1.402456 CGAGACCTGTTTACGGAGGTG 60.402 57.143 0.00 0.00 42.95 4.00
553 1785 1.617357 GAGACCTGTTTACGGAGGTGT 59.383 52.381 0.00 0.00 42.95 4.16
554 1786 1.343465 AGACCTGTTTACGGAGGTGTG 59.657 52.381 0.00 0.00 42.95 3.82
555 1787 1.069668 GACCTGTTTACGGAGGTGTGT 59.930 52.381 0.00 0.00 42.95 3.72
556 1788 2.297033 GACCTGTTTACGGAGGTGTGTA 59.703 50.000 0.00 0.00 42.95 2.90
557 1789 2.036346 ACCTGTTTACGGAGGTGTGTAC 59.964 50.000 0.00 0.00 41.27 2.90
558 1790 2.036217 CCTGTTTACGGAGGTGTGTACA 59.964 50.000 0.00 0.00 0.00 2.90
559 1791 3.306502 CCTGTTTACGGAGGTGTGTACAT 60.307 47.826 0.00 0.00 0.00 2.29
560 1792 3.655486 TGTTTACGGAGGTGTGTACATG 58.345 45.455 0.00 0.00 0.00 3.21
561 1793 3.321396 TGTTTACGGAGGTGTGTACATGA 59.679 43.478 0.00 0.00 0.00 3.07
562 1794 4.020928 TGTTTACGGAGGTGTGTACATGAT 60.021 41.667 0.00 0.00 0.00 2.45
563 1795 4.811969 TTACGGAGGTGTGTACATGATT 57.188 40.909 0.00 0.00 0.00 2.57
564 1796 2.972625 ACGGAGGTGTGTACATGATTG 58.027 47.619 0.00 0.00 0.00 2.67
565 1797 2.279741 CGGAGGTGTGTACATGATTGG 58.720 52.381 0.00 0.00 0.00 3.16
566 1798 2.093711 CGGAGGTGTGTACATGATTGGA 60.094 50.000 0.00 0.00 0.00 3.53
567 1799 3.535561 GGAGGTGTGTACATGATTGGAG 58.464 50.000 0.00 0.00 0.00 3.86
568 1800 3.535561 GAGGTGTGTACATGATTGGAGG 58.464 50.000 0.00 0.00 0.00 4.30
569 1801 2.017049 GGTGTGTACATGATTGGAGGC 58.983 52.381 0.00 0.00 0.00 4.70
570 1802 2.356125 GGTGTGTACATGATTGGAGGCT 60.356 50.000 0.00 0.00 0.00 4.58
571 1803 3.118408 GGTGTGTACATGATTGGAGGCTA 60.118 47.826 0.00 0.00 0.00 3.93
572 1804 3.871594 GTGTGTACATGATTGGAGGCTAC 59.128 47.826 0.00 0.00 0.00 3.58
573 1805 3.123804 GTGTACATGATTGGAGGCTACG 58.876 50.000 0.00 0.00 0.00 3.51
574 1806 2.102420 TGTACATGATTGGAGGCTACGG 59.898 50.000 0.00 0.00 0.00 4.02
575 1807 0.179045 ACATGATTGGAGGCTACGGC 60.179 55.000 0.00 0.00 37.82 5.68
576 1808 0.179048 CATGATTGGAGGCTACGGCA 60.179 55.000 0.00 0.00 40.87 5.69
577 1809 0.546122 ATGATTGGAGGCTACGGCAA 59.454 50.000 0.00 0.00 40.87 4.52
578 1810 0.107703 TGATTGGAGGCTACGGCAAG 60.108 55.000 0.00 0.00 40.87 4.01
579 1811 0.178068 GATTGGAGGCTACGGCAAGA 59.822 55.000 0.00 0.00 40.87 3.02
580 1812 0.839946 ATTGGAGGCTACGGCAAGAT 59.160 50.000 0.00 0.00 40.87 2.40
581 1813 1.491668 TTGGAGGCTACGGCAAGATA 58.508 50.000 0.00 0.00 40.87 1.98
582 1814 1.717032 TGGAGGCTACGGCAAGATAT 58.283 50.000 0.00 0.00 40.87 1.63
583 1815 2.884320 TGGAGGCTACGGCAAGATATA 58.116 47.619 0.00 0.00 40.87 0.86
584 1816 3.441101 TGGAGGCTACGGCAAGATATAT 58.559 45.455 0.00 0.00 40.87 0.86
585 1817 3.838317 TGGAGGCTACGGCAAGATATATT 59.162 43.478 0.00 0.00 40.87 1.28
586 1818 4.286032 TGGAGGCTACGGCAAGATATATTT 59.714 41.667 0.00 0.00 40.87 1.40
587 1819 5.221843 TGGAGGCTACGGCAAGATATATTTT 60.222 40.000 0.00 0.00 40.87 1.82
588 1820 5.705905 GGAGGCTACGGCAAGATATATTTTT 59.294 40.000 0.00 0.00 40.87 1.94
589 1821 6.877322 GGAGGCTACGGCAAGATATATTTTTA 59.123 38.462 0.00 0.00 40.87 1.52
590 1822 7.553044 GGAGGCTACGGCAAGATATATTTTTAT 59.447 37.037 0.00 0.00 40.87 1.40
591 1823 8.494016 AGGCTACGGCAAGATATATTTTTATC 57.506 34.615 0.00 0.00 40.87 1.75
592 1824 7.553044 AGGCTACGGCAAGATATATTTTTATCC 59.447 37.037 0.00 0.00 40.87 2.59
593 1825 7.335924 GGCTACGGCAAGATATATTTTTATCCA 59.664 37.037 0.00 0.00 40.87 3.41
594 1826 8.726988 GCTACGGCAAGATATATTTTTATCCAA 58.273 33.333 0.00 0.00 38.54 3.53
596 1828 7.581476 ACGGCAAGATATATTTTTATCCAACG 58.419 34.615 0.00 0.00 30.29 4.10
597 1829 7.227910 ACGGCAAGATATATTTTTATCCAACGT 59.772 33.333 0.00 0.00 30.29 3.99
598 1830 7.533900 CGGCAAGATATATTTTTATCCAACGTG 59.466 37.037 0.00 0.00 30.29 4.49
599 1831 7.807907 GGCAAGATATATTTTTATCCAACGTGG 59.192 37.037 0.00 0.00 39.43 4.94
600 1832 7.807907 GCAAGATATATTTTTATCCAACGTGGG 59.192 37.037 1.09 1.09 38.32 4.61
601 1833 8.846211 CAAGATATATTTTTATCCAACGTGGGT 58.154 33.333 9.33 1.71 38.32 4.51
602 1834 8.391075 AGATATATTTTTATCCAACGTGGGTG 57.609 34.615 9.33 0.00 38.32 4.61
603 1835 5.845391 ATATTTTTATCCAACGTGGGTGG 57.155 39.130 9.33 3.24 38.32 4.61
604 1836 1.249407 TTTTATCCAACGTGGGTGGC 58.751 50.000 9.33 0.00 38.32 5.01
605 1837 0.110678 TTTATCCAACGTGGGTGGCA 59.889 50.000 9.33 0.00 38.32 4.92
606 1838 0.322098 TTATCCAACGTGGGTGGCAG 60.322 55.000 9.33 0.00 38.32 4.85
607 1839 2.813226 TATCCAACGTGGGTGGCAGC 62.813 60.000 9.33 8.47 38.32 5.25
609 1841 2.985282 CAACGTGGGTGGCAGCAT 60.985 61.111 19.48 0.00 0.00 3.79
610 1842 2.985282 AACGTGGGTGGCAGCATG 60.985 61.111 19.48 12.03 40.87 4.06
611 1843 3.490031 AACGTGGGTGGCAGCATGA 62.490 57.895 19.48 0.00 39.69 3.07
612 1844 2.438975 CGTGGGTGGCAGCATGAT 60.439 61.111 19.48 0.00 39.69 2.45
613 1845 2.475466 CGTGGGTGGCAGCATGATC 61.475 63.158 19.48 0.71 39.69 2.92
614 1846 1.077212 GTGGGTGGCAGCATGATCT 60.077 57.895 19.48 0.00 39.69 2.75
615 1847 0.682209 GTGGGTGGCAGCATGATCTT 60.682 55.000 19.48 0.00 39.69 2.40
616 1848 0.918258 TGGGTGGCAGCATGATCTTA 59.082 50.000 19.48 0.00 39.69 2.10
617 1849 1.134007 TGGGTGGCAGCATGATCTTAG 60.134 52.381 19.48 0.00 39.69 2.18
618 1850 1.602311 GGTGGCAGCATGATCTTAGG 58.398 55.000 12.58 0.00 39.69 2.69
619 1851 1.141657 GGTGGCAGCATGATCTTAGGA 59.858 52.381 12.58 0.00 39.69 2.94
620 1852 2.224719 GGTGGCAGCATGATCTTAGGAT 60.225 50.000 12.58 0.00 39.69 3.24
621 1853 3.484407 GTGGCAGCATGATCTTAGGATT 58.516 45.455 0.00 0.00 39.69 3.01
622 1854 4.505566 GGTGGCAGCATGATCTTAGGATTA 60.506 45.833 12.58 0.00 39.69 1.75
623 1855 4.694509 GTGGCAGCATGATCTTAGGATTAG 59.305 45.833 0.00 0.00 39.69 1.73
624 1856 4.260170 GGCAGCATGATCTTAGGATTAGG 58.740 47.826 0.00 0.00 39.69 2.69
625 1857 3.688673 GCAGCATGATCTTAGGATTAGGC 59.311 47.826 7.99 7.99 42.75 3.93
626 1858 4.260170 CAGCATGATCTTAGGATTAGGCC 58.740 47.826 11.73 0.00 43.20 5.19
627 1859 3.912528 AGCATGATCTTAGGATTAGGCCA 59.087 43.478 11.73 0.00 43.20 5.36
628 1860 4.006319 GCATGATCTTAGGATTAGGCCAC 58.994 47.826 5.01 0.00 38.65 5.01
629 1861 4.583871 CATGATCTTAGGATTAGGCCACC 58.416 47.826 5.01 2.48 31.46 4.61
630 1862 3.941629 TGATCTTAGGATTAGGCCACCT 58.058 45.455 5.01 10.72 37.76 4.00
631 1863 4.307259 TGATCTTAGGATTAGGCCACCTT 58.693 43.478 5.01 0.00 35.52 3.50
632 1864 4.348168 TGATCTTAGGATTAGGCCACCTTC 59.652 45.833 5.01 3.47 35.52 3.46
633 1865 3.731431 TCTTAGGATTAGGCCACCTTCA 58.269 45.455 5.01 0.00 34.61 3.02
634 1866 3.711704 TCTTAGGATTAGGCCACCTTCAG 59.288 47.826 5.01 7.93 34.61 3.02
635 1867 1.972588 AGGATTAGGCCACCTTCAGT 58.027 50.000 5.01 0.00 34.61 3.41
636 1868 2.279173 AGGATTAGGCCACCTTCAGTT 58.721 47.619 5.01 0.00 34.61 3.16
637 1869 2.649816 AGGATTAGGCCACCTTCAGTTT 59.350 45.455 5.01 0.00 34.61 2.66
638 1870 3.850173 AGGATTAGGCCACCTTCAGTTTA 59.150 43.478 5.01 0.00 34.61 2.01
639 1871 3.945921 GGATTAGGCCACCTTCAGTTTAC 59.054 47.826 5.01 0.00 34.61 2.01
640 1872 2.754946 TAGGCCACCTTCAGTTTACG 57.245 50.000 5.01 0.00 34.61 3.18
641 1873 0.605589 AGGCCACCTTCAGTTTACGC 60.606 55.000 5.01 0.00 0.00 4.42
642 1874 1.495951 GCCACCTTCAGTTTACGCG 59.504 57.895 3.53 3.53 0.00 6.01
643 1875 1.226030 GCCACCTTCAGTTTACGCGT 61.226 55.000 19.17 19.17 0.00 6.01
644 1876 1.223187 CCACCTTCAGTTTACGCGTT 58.777 50.000 20.78 0.80 0.00 4.84
645 1877 2.406130 CCACCTTCAGTTTACGCGTTA 58.594 47.619 20.78 5.00 0.00 3.18
646 1878 2.997986 CCACCTTCAGTTTACGCGTTAT 59.002 45.455 20.78 0.00 0.00 1.89
647 1879 4.175516 CCACCTTCAGTTTACGCGTTATA 58.824 43.478 20.78 0.00 0.00 0.98
648 1880 4.807304 CCACCTTCAGTTTACGCGTTATAT 59.193 41.667 20.78 0.00 0.00 0.86
649 1881 5.978919 CCACCTTCAGTTTACGCGTTATATA 59.021 40.000 20.78 0.00 0.00 0.86
650 1882 6.143438 CCACCTTCAGTTTACGCGTTATATAG 59.857 42.308 20.78 6.78 0.00 1.31
651 1883 6.914215 CACCTTCAGTTTACGCGTTATATAGA 59.086 38.462 20.78 6.47 0.00 1.98
652 1884 7.433131 CACCTTCAGTTTACGCGTTATATAGAA 59.567 37.037 20.78 14.03 0.00 2.10
653 1885 8.139989 ACCTTCAGTTTACGCGTTATATAGAAT 58.860 33.333 20.78 0.00 0.00 2.40
654 1886 8.975439 CCTTCAGTTTACGCGTTATATAGAATT 58.025 33.333 20.78 0.00 0.00 2.17
655 1887 9.990888 CTTCAGTTTACGCGTTATATAGAATTC 57.009 33.333 20.78 0.00 0.00 2.17
656 1888 9.518906 TTCAGTTTACGCGTTATATAGAATTCA 57.481 29.630 20.78 0.00 0.00 2.57
657 1889 9.687210 TCAGTTTACGCGTTATATAGAATTCAT 57.313 29.630 20.78 2.21 0.00 2.57
660 1892 9.737025 GTTTACGCGTTATATAGAATTCATTCC 57.263 33.333 20.78 0.00 37.51 3.01
661 1893 9.701098 TTTACGCGTTATATAGAATTCATTCCT 57.299 29.630 20.78 0.00 37.51 3.36
662 1894 9.701098 TTACGCGTTATATAGAATTCATTCCTT 57.299 29.630 20.78 0.00 37.51 3.36
664 1896 9.871238 ACGCGTTATATAGAATTCATTCCTTAT 57.129 29.630 5.58 0.00 37.51 1.73
693 1925 8.647143 TTGCCTTCTTCTTTTATTTTGACTTG 57.353 30.769 0.00 0.00 0.00 3.16
694 1926 7.209475 TGCCTTCTTCTTTTATTTTGACTTGG 58.791 34.615 0.00 0.00 0.00 3.61
695 1927 7.147742 TGCCTTCTTCTTTTATTTTGACTTGGT 60.148 33.333 0.00 0.00 0.00 3.67
696 1928 7.169813 GCCTTCTTCTTTTATTTTGACTTGGTG 59.830 37.037 0.00 0.00 0.00 4.17
697 1929 8.197439 CCTTCTTCTTTTATTTTGACTTGGTGT 58.803 33.333 0.00 0.00 0.00 4.16
698 1930 8.925161 TTCTTCTTTTATTTTGACTTGGTGTG 57.075 30.769 0.00 0.00 0.00 3.82
699 1931 8.287439 TCTTCTTTTATTTTGACTTGGTGTGA 57.713 30.769 0.00 0.00 0.00 3.58
700 1932 8.405531 TCTTCTTTTATTTTGACTTGGTGTGAG 58.594 33.333 0.00 0.00 0.00 3.51
701 1933 7.038154 TCTTTTATTTTGACTTGGTGTGAGG 57.962 36.000 0.00 0.00 0.00 3.86
702 1934 6.831353 TCTTTTATTTTGACTTGGTGTGAGGA 59.169 34.615 0.00 0.00 0.00 3.71
703 1935 6.385649 TTTATTTTGACTTGGTGTGAGGAC 57.614 37.500 0.00 0.00 0.00 3.85
704 1936 3.644966 TTTTGACTTGGTGTGAGGACT 57.355 42.857 0.00 0.00 0.00 3.85
705 1937 3.644966 TTTGACTTGGTGTGAGGACTT 57.355 42.857 0.00 0.00 0.00 3.01
706 1938 3.644966 TTGACTTGGTGTGAGGACTTT 57.355 42.857 0.00 0.00 0.00 2.66
707 1939 4.764050 TTGACTTGGTGTGAGGACTTTA 57.236 40.909 0.00 0.00 0.00 1.85
708 1940 4.974645 TGACTTGGTGTGAGGACTTTAT 57.025 40.909 0.00 0.00 0.00 1.40
709 1941 5.304686 TGACTTGGTGTGAGGACTTTATT 57.695 39.130 0.00 0.00 0.00 1.40
710 1942 6.428083 TGACTTGGTGTGAGGACTTTATTA 57.572 37.500 0.00 0.00 0.00 0.98
711 1943 6.833041 TGACTTGGTGTGAGGACTTTATTAA 58.167 36.000 0.00 0.00 0.00 1.40
712 1944 6.708949 TGACTTGGTGTGAGGACTTTATTAAC 59.291 38.462 0.00 0.00 0.00 2.01
713 1945 6.838382 ACTTGGTGTGAGGACTTTATTAACT 58.162 36.000 0.00 0.00 0.00 2.24
714 1946 6.710744 ACTTGGTGTGAGGACTTTATTAACTG 59.289 38.462 0.00 0.00 0.00 3.16
715 1947 6.182507 TGGTGTGAGGACTTTATTAACTGT 57.817 37.500 0.00 0.00 0.00 3.55
716 1948 5.995282 TGGTGTGAGGACTTTATTAACTGTG 59.005 40.000 0.00 0.00 0.00 3.66
717 1949 5.995897 GGTGTGAGGACTTTATTAACTGTGT 59.004 40.000 0.00 0.00 0.00 3.72
718 1950 6.073222 GGTGTGAGGACTTTATTAACTGTGTG 60.073 42.308 0.00 0.00 0.00 3.82
719 1951 5.468746 TGTGAGGACTTTATTAACTGTGTGC 59.531 40.000 0.00 0.00 0.00 4.57
720 1952 5.468746 GTGAGGACTTTATTAACTGTGTGCA 59.531 40.000 0.00 0.00 0.00 4.57
721 1953 6.149474 GTGAGGACTTTATTAACTGTGTGCAT 59.851 38.462 0.00 0.00 0.00 3.96
722 1954 6.371548 TGAGGACTTTATTAACTGTGTGCATC 59.628 38.462 0.00 0.00 0.00 3.91
723 1955 6.476378 AGGACTTTATTAACTGTGTGCATCT 58.524 36.000 0.00 0.00 0.00 2.90
724 1956 6.942576 AGGACTTTATTAACTGTGTGCATCTT 59.057 34.615 0.00 0.00 0.00 2.40
725 1957 8.100791 AGGACTTTATTAACTGTGTGCATCTTA 58.899 33.333 0.00 0.00 0.00 2.10
726 1958 8.726988 GGACTTTATTAACTGTGTGCATCTTAA 58.273 33.333 0.00 0.00 0.00 1.85
740 1972 4.675190 CATCTTAATTATGCAGAGGCCG 57.325 45.455 0.00 0.00 40.13 6.13
741 1973 3.126001 TCTTAATTATGCAGAGGCCGG 57.874 47.619 0.00 0.00 40.13 6.13
742 1974 2.154462 CTTAATTATGCAGAGGCCGGG 58.846 52.381 2.18 0.00 40.13 5.73
743 1975 1.136828 TAATTATGCAGAGGCCGGGT 58.863 50.000 2.18 0.00 40.13 5.28
744 1976 0.466189 AATTATGCAGAGGCCGGGTG 60.466 55.000 2.18 0.00 40.13 4.61
745 1977 2.965716 ATTATGCAGAGGCCGGGTGC 62.966 60.000 17.31 17.31 40.13 5.01
749 1981 3.136123 CAGAGGCCGGGTGCAATG 61.136 66.667 2.18 0.00 43.89 2.82
752 1984 4.684134 AGGCCGGGTGCAATGCTT 62.684 61.111 6.82 0.00 43.89 3.91
753 1985 2.753849 GGCCGGGTGCAATGCTTA 60.754 61.111 6.82 0.00 43.89 3.09
754 1986 2.347322 GGCCGGGTGCAATGCTTAA 61.347 57.895 6.82 0.00 43.89 1.85
755 1987 1.589113 GCCGGGTGCAATGCTTAAA 59.411 52.632 6.82 0.00 40.77 1.52
756 1988 0.735978 GCCGGGTGCAATGCTTAAAC 60.736 55.000 6.82 0.00 40.77 2.01
757 1989 0.108851 CCGGGTGCAATGCTTAAACC 60.109 55.000 6.82 5.28 0.00 3.27
758 1990 0.887933 CGGGTGCAATGCTTAAACCT 59.112 50.000 6.82 0.00 0.00 3.50
759 1991 1.272212 CGGGTGCAATGCTTAAACCTT 59.728 47.619 6.82 0.00 0.00 3.50
760 1992 2.288763 CGGGTGCAATGCTTAAACCTTT 60.289 45.455 6.82 0.00 0.00 3.11
761 1993 3.738982 GGGTGCAATGCTTAAACCTTTT 58.261 40.909 6.82 0.00 0.00 2.27
762 1994 4.559704 CGGGTGCAATGCTTAAACCTTTTA 60.560 41.667 6.82 0.00 0.00 1.52
763 1995 5.301555 GGGTGCAATGCTTAAACCTTTTAA 58.698 37.500 6.82 0.00 0.00 1.52
764 1996 5.408299 GGGTGCAATGCTTAAACCTTTTAAG 59.592 40.000 6.82 12.23 35.63 1.85
765 1997 5.989168 GGTGCAATGCTTAAACCTTTTAAGT 59.011 36.000 16.14 0.01 35.14 2.24
766 1998 7.149307 GGTGCAATGCTTAAACCTTTTAAGTA 58.851 34.615 16.14 13.37 35.14 2.24
767 1999 7.654116 GGTGCAATGCTTAAACCTTTTAAGTAA 59.346 33.333 16.14 8.47 35.14 2.24
768 2000 9.203421 GTGCAATGCTTAAACCTTTTAAGTAAT 57.797 29.630 16.14 9.88 35.14 1.89
774 2006 9.615295 TGCTTAAACCTTTTAAGTAATAAAGCG 57.385 29.630 16.14 0.00 35.03 4.68
775 2007 8.581263 GCTTAAACCTTTTAAGTAATAAAGCGC 58.419 33.333 16.14 0.00 35.03 5.92
776 2008 8.969121 TTAAACCTTTTAAGTAATAAAGCGCC 57.031 30.769 2.29 0.00 35.03 6.53
777 2009 5.571784 ACCTTTTAAGTAATAAAGCGCCC 57.428 39.130 2.29 0.00 35.03 6.13
778 2010 4.400251 ACCTTTTAAGTAATAAAGCGCCCC 59.600 41.667 2.29 0.00 35.03 5.80
779 2011 4.643334 CCTTTTAAGTAATAAAGCGCCCCT 59.357 41.667 2.29 0.00 35.03 4.79
780 2012 5.126545 CCTTTTAAGTAATAAAGCGCCCCTT 59.873 40.000 2.29 0.00 35.03 3.95
781 2013 6.350696 CCTTTTAAGTAATAAAGCGCCCCTTT 60.351 38.462 2.29 0.06 45.44 3.11
782 2014 6.593268 TTTAAGTAATAAAGCGCCCCTTTT 57.407 33.333 2.29 0.00 40.85 2.27
783 2015 4.713824 AAGTAATAAAGCGCCCCTTTTC 57.286 40.909 2.29 0.00 40.85 2.29
784 2016 2.681344 AGTAATAAAGCGCCCCTTTTCG 59.319 45.455 2.29 0.00 40.85 3.46
785 2017 1.828979 AATAAAGCGCCCCTTTTCGA 58.171 45.000 2.29 0.00 40.85 3.71
786 2018 1.828979 ATAAAGCGCCCCTTTTCGAA 58.171 45.000 2.29 0.00 40.85 3.71
787 2019 1.161843 TAAAGCGCCCCTTTTCGAAG 58.838 50.000 2.29 0.00 40.85 3.79
788 2020 0.536460 AAAGCGCCCCTTTTCGAAGA 60.536 50.000 2.29 0.00 40.85 2.87
789 2021 0.536460 AAGCGCCCCTTTTCGAAGAA 60.536 50.000 2.29 0.00 45.90 2.52
790 2022 0.536460 AGCGCCCCTTTTCGAAGAAA 60.536 50.000 2.29 0.00 45.90 2.52
791 2023 0.312729 GCGCCCCTTTTCGAAGAAAA 59.687 50.000 0.00 7.58 45.90 2.29
838 2070 1.076332 GATCACCCGTCAGTTTTCCG 58.924 55.000 0.00 0.00 0.00 4.30
845 2077 1.671845 CCGTCAGTTTTCCGACCAAAA 59.328 47.619 0.00 0.00 0.00 2.44
876 2108 0.172352 CACACACACGCCAAAACCTT 59.828 50.000 0.00 0.00 0.00 3.50
889 2121 3.056179 CCAAAACCTTCCAAACACACAGT 60.056 43.478 0.00 0.00 0.00 3.55
899 2131 1.705002 AACACACAGTGCCCAGCCTA 61.705 55.000 0.00 0.00 36.98 3.93
904 2136 1.895131 CACAGTGCCCAGCCTAAAAAT 59.105 47.619 0.00 0.00 0.00 1.82
922 2154 0.541863 ATCAGACGGATCACCAACCC 59.458 55.000 0.00 0.00 35.59 4.11
930 2162 1.542375 ATCACCAACCCAGAGGCCT 60.542 57.895 3.86 3.86 36.11 5.19
931 2163 1.566298 ATCACCAACCCAGAGGCCTC 61.566 60.000 26.22 26.22 36.11 4.70
959 2193 4.470334 AAAAACACACTTCCTGCAACAT 57.530 36.364 0.00 0.00 0.00 2.71
963 2197 4.568152 ACACACTTCCTGCAACATAAAC 57.432 40.909 0.00 0.00 0.00 2.01
968 2202 4.074970 ACTTCCTGCAACATAAACCTCAG 58.925 43.478 0.00 0.00 0.00 3.35
991 2225 2.728383 CGCACCGTCGTTCGTTCT 60.728 61.111 0.00 0.00 37.94 3.01
1001 2235 0.317603 CGTTCGTTCTGTCACGTCCT 60.318 55.000 0.00 0.00 41.16 3.85
1007 2241 4.256110 TCGTTCTGTCACGTCCTATAAGA 58.744 43.478 0.00 0.00 41.16 2.10
1012 2246 4.880120 TCTGTCACGTCCTATAAGAACGAT 59.120 41.667 0.71 0.00 39.59 3.73
1029 2263 1.926510 CGATTGCGCACTAGAACATCA 59.073 47.619 11.12 0.00 0.00 3.07
1072 2306 1.767759 CCCCAAGAAAGCCATCGATT 58.232 50.000 0.00 0.00 0.00 3.34
1081 2315 0.179062 AGCCATCGATTGAGCTCCAC 60.179 55.000 12.15 1.50 29.20 4.02
1104 2338 2.247358 GGCATGGTTTCCTCCAAGAAA 58.753 47.619 0.00 0.00 41.09 2.52
1120 2354 1.947456 AGAAAACCGCGCTTCTTTTCT 59.053 42.857 21.46 21.46 38.72 2.52
1126 2360 1.080501 GCGCTTCTTTTCTTGGCCC 60.081 57.895 0.00 0.00 0.00 5.80
1135 2369 2.645394 TTTCTTGGCCCTGCTGCTGT 62.645 55.000 0.00 0.00 0.00 4.40
1191 2425 3.532155 GAGGAGACGGCGCCTGAT 61.532 66.667 22.14 10.01 45.01 2.90
1197 2431 3.774959 GACGGCGCCTGATGACGAT 62.775 63.158 26.68 0.00 0.00 3.73
1209 2443 1.678598 ATGACGATTACCCGGCCGAA 61.679 55.000 30.73 14.41 36.58 4.30
1269 2509 2.108566 TTGCCGTCGTTCCCGAAA 59.891 55.556 0.00 0.00 46.26 3.46
1275 2515 0.661187 CGTCGTTCCCGAAAGTCGAA 60.661 55.000 0.00 0.00 46.26 3.71
1281 2521 2.380410 CCCGAAAGTCGAACTGCCG 61.380 63.158 0.00 0.00 43.74 5.69
1313 2568 2.041115 GGTTCAGCTTTCCCGAGCC 61.041 63.158 0.00 0.00 43.74 4.70
1387 2642 5.681543 TGATACTCAGAATCGATCGTTTTCG 59.318 40.000 15.94 14.17 45.64 3.46
1388 2643 3.179830 ACTCAGAATCGATCGTTTTCGG 58.820 45.455 15.94 18.04 44.25 4.30
1391 2646 3.128068 TCAGAATCGATCGTTTTCGGAGA 59.872 43.478 21.79 18.14 44.25 3.71
1392 2647 3.240861 CAGAATCGATCGTTTTCGGAGAC 59.759 47.826 15.94 0.00 44.25 3.36
1406 2661 1.664965 GAGACAGTGTGTGCCGTCC 60.665 63.158 0.00 0.00 0.00 4.79
1407 2662 2.108157 GACAGTGTGTGCCGTCCA 59.892 61.111 0.00 0.00 0.00 4.02
1408 2663 1.956170 GACAGTGTGTGCCGTCCAG 60.956 63.158 0.00 0.00 0.00 3.86
1409 2664 2.666190 CAGTGTGTGCCGTCCAGG 60.666 66.667 0.00 0.00 44.97 4.45
1418 2673 3.068881 CCGTCCAGGCTCCTTTGA 58.931 61.111 0.00 0.00 0.00 2.69
1419 2674 1.078848 CCGTCCAGGCTCCTTTGAG 60.079 63.158 0.00 0.00 41.84 3.02
1420 2675 1.078848 CGTCCAGGCTCCTTTGAGG 60.079 63.158 0.00 0.00 39.14 3.86
1421 2676 1.831652 CGTCCAGGCTCCTTTGAGGT 61.832 60.000 0.00 0.00 39.14 3.85
1456 2711 1.817520 CGTTGTGGTGTGCTGTGGA 60.818 57.895 0.00 0.00 0.00 4.02
1457 2712 1.727467 GTTGTGGTGTGCTGTGGAC 59.273 57.895 0.00 0.00 0.00 4.02
1458 2713 1.453015 TTGTGGTGTGCTGTGGACC 60.453 57.895 0.00 0.00 0.00 4.46
1459 2714 1.920734 TTGTGGTGTGCTGTGGACCT 61.921 55.000 0.00 0.00 0.00 3.85
1460 2715 1.893808 GTGGTGTGCTGTGGACCTG 60.894 63.158 0.00 0.00 0.00 4.00
1461 2716 2.374525 TGGTGTGCTGTGGACCTGT 61.375 57.895 0.00 0.00 0.00 4.00
1462 2717 1.893808 GGTGTGCTGTGGACCTGTG 60.894 63.158 0.00 0.00 0.00 3.66
1463 2718 1.893808 GTGTGCTGTGGACCTGTGG 60.894 63.158 0.00 0.00 0.00 4.17
1464 2719 2.374525 TGTGCTGTGGACCTGTGGT 61.375 57.895 0.00 0.00 39.44 4.16
1465 2720 1.893808 GTGCTGTGGACCTGTGGTG 60.894 63.158 0.00 0.00 35.25 4.17
1466 2721 2.374525 TGCTGTGGACCTGTGGTGT 61.375 57.895 0.00 0.00 35.25 4.16
1467 2722 1.152963 GCTGTGGACCTGTGGTGTT 60.153 57.895 0.00 0.00 35.25 3.32
1468 2723 1.166531 GCTGTGGACCTGTGGTGTTC 61.167 60.000 0.00 0.00 35.25 3.18
1469 2724 0.880278 CTGTGGACCTGTGGTGTTCG 60.880 60.000 0.00 0.00 35.25 3.95
1470 2725 1.145377 GTGGACCTGTGGTGTTCGT 59.855 57.895 0.00 0.00 35.25 3.85
1471 2726 1.145156 TGGACCTGTGGTGTTCGTG 59.855 57.895 0.00 0.00 35.25 4.35
1472 2727 2.251642 GGACCTGTGGTGTTCGTGC 61.252 63.158 0.00 0.00 35.25 5.34
1473 2728 2.587753 ACCTGTGGTGTTCGTGCG 60.588 61.111 0.00 0.00 32.98 5.34
1474 2729 2.279851 CCTGTGGTGTTCGTGCGA 60.280 61.111 0.00 0.00 0.00 5.10
1475 2730 2.594962 CCTGTGGTGTTCGTGCGAC 61.595 63.158 0.00 0.00 0.00 5.19
1476 2731 2.586635 TGTGGTGTTCGTGCGACC 60.587 61.111 0.00 0.00 0.00 4.79
1483 2738 3.033764 TTCGTGCGACCTTCGTGC 61.034 61.111 0.00 0.00 42.81 5.34
1510 2765 6.599244 ACCTTATTGGATTGTGATACAGTGTG 59.401 38.462 5.88 0.00 39.71 3.82
1512 2767 2.345876 TGGATTGTGATACAGTGTGCG 58.654 47.619 5.88 0.00 0.00 5.34
1513 2768 2.028567 TGGATTGTGATACAGTGTGCGA 60.029 45.455 5.88 0.00 0.00 5.10
1564 2819 4.067896 CCCATTGAAATATCCAGGTCTCG 58.932 47.826 0.00 0.00 0.00 4.04
1586 2841 3.877559 CACATGGCATCTGTTAGAAGGA 58.122 45.455 0.00 0.00 0.00 3.36
1614 2870 6.014242 AGAGAGGATTGTTGCGGAATATGATA 60.014 38.462 0.00 0.00 0.00 2.15
1677 2933 3.121030 CTTGGAGGGCAAGACGCG 61.121 66.667 3.53 3.53 43.84 6.01
2066 3324 4.373116 GGAGTCGCCGTGAAGCCA 62.373 66.667 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.630769 CACTATGCCAGAATGCAATCTGT 59.369 43.478 26.12 13.37 45.84 3.41
1 2 3.881089 TCACTATGCCAGAATGCAATCTG 59.119 43.478 22.56 22.56 45.84 2.90
2 3 4.160642 TCACTATGCCAGAATGCAATCT 57.839 40.909 0.00 0.00 45.84 2.40
17 18 2.017049 GAAACCTGCCGCATTCACTAT 58.983 47.619 0.00 0.00 0.00 2.12
155 156 3.948719 TGTGGCCACGACTTCCCC 61.949 66.667 30.07 4.19 0.00 4.81
294 295 0.878523 TACGATAACTGCGCATGCCC 60.879 55.000 12.24 3.10 41.78 5.36
296 297 1.593006 AGTTACGATAACTGCGCATGC 59.407 47.619 12.24 7.91 43.20 4.06
337 1568 2.245438 CTTTGCTCGTCCTCCTCCCC 62.245 65.000 0.00 0.00 0.00 4.81
393 1625 2.018544 CAAAACTGCCGAACGACCA 58.981 52.632 0.00 0.00 0.00 4.02
446 1678 9.046296 CCTGCATAAGAGAAGTATTTTTATCGT 57.954 33.333 0.00 0.00 0.00 3.73
447 1679 9.046296 ACCTGCATAAGAGAAGTATTTTTATCG 57.954 33.333 0.00 0.00 0.00 2.92
455 1687 9.368416 TGTAGATAACCTGCATAAGAGAAGTAT 57.632 33.333 0.00 0.00 32.40 2.12
456 1688 8.762481 TGTAGATAACCTGCATAAGAGAAGTA 57.238 34.615 0.00 0.00 32.40 2.24
457 1689 7.661536 TGTAGATAACCTGCATAAGAGAAGT 57.338 36.000 0.00 0.00 32.40 3.01
458 1690 8.948631 TTTGTAGATAACCTGCATAAGAGAAG 57.051 34.615 0.00 0.00 37.35 2.85
459 1691 9.330063 CATTTGTAGATAACCTGCATAAGAGAA 57.670 33.333 0.00 0.00 37.35 2.87
460 1692 8.486210 ACATTTGTAGATAACCTGCATAAGAGA 58.514 33.333 0.00 0.00 37.35 3.10
461 1693 8.668510 ACATTTGTAGATAACCTGCATAAGAG 57.331 34.615 0.00 0.00 37.35 2.85
462 1694 9.542462 GTACATTTGTAGATAACCTGCATAAGA 57.458 33.333 0.00 0.00 37.35 2.10
463 1695 8.774586 GGTACATTTGTAGATAACCTGCATAAG 58.225 37.037 0.00 0.00 37.35 1.73
464 1696 7.439955 CGGTACATTTGTAGATAACCTGCATAA 59.560 37.037 0.00 0.00 37.35 1.90
465 1697 6.926826 CGGTACATTTGTAGATAACCTGCATA 59.073 38.462 0.00 0.00 37.35 3.14
466 1698 5.758296 CGGTACATTTGTAGATAACCTGCAT 59.242 40.000 0.00 0.00 37.35 3.96
467 1699 5.113383 CGGTACATTTGTAGATAACCTGCA 58.887 41.667 0.00 0.00 35.65 4.41
468 1700 4.510340 CCGGTACATTTGTAGATAACCTGC 59.490 45.833 0.00 0.00 0.00 4.85
469 1701 5.054477 CCCGGTACATTTGTAGATAACCTG 58.946 45.833 0.00 0.00 0.00 4.00
470 1702 4.964262 TCCCGGTACATTTGTAGATAACCT 59.036 41.667 0.00 0.00 0.00 3.50
471 1703 5.280654 TCCCGGTACATTTGTAGATAACC 57.719 43.478 0.00 0.00 0.00 2.85
472 1704 7.215085 AGAATCCCGGTACATTTGTAGATAAC 58.785 38.462 0.00 0.00 0.00 1.89
473 1705 7.369551 AGAATCCCGGTACATTTGTAGATAA 57.630 36.000 0.00 0.00 0.00 1.75
474 1706 6.989155 AGAATCCCGGTACATTTGTAGATA 57.011 37.500 0.00 0.00 0.00 1.98
475 1707 5.888982 AGAATCCCGGTACATTTGTAGAT 57.111 39.130 0.00 0.00 0.00 1.98
476 1708 5.687166 AAGAATCCCGGTACATTTGTAGA 57.313 39.130 0.00 0.00 0.00 2.59
477 1709 5.065988 CCAAAGAATCCCGGTACATTTGTAG 59.934 44.000 0.00 0.00 0.00 2.74
478 1710 4.944930 CCAAAGAATCCCGGTACATTTGTA 59.055 41.667 0.00 0.00 0.00 2.41
479 1711 3.761752 CCAAAGAATCCCGGTACATTTGT 59.238 43.478 0.00 0.00 0.00 2.83
480 1712 3.761752 ACCAAAGAATCCCGGTACATTTG 59.238 43.478 0.00 5.14 0.00 2.32
481 1713 4.042271 ACCAAAGAATCCCGGTACATTT 57.958 40.909 0.00 0.00 0.00 2.32
482 1714 3.732048 ACCAAAGAATCCCGGTACATT 57.268 42.857 0.00 0.00 0.00 2.71
483 1715 3.732048 AACCAAAGAATCCCGGTACAT 57.268 42.857 0.00 0.00 0.00 2.29
484 1716 4.519213 CATAACCAAAGAATCCCGGTACA 58.481 43.478 0.00 0.00 0.00 2.90
485 1717 3.881089 CCATAACCAAAGAATCCCGGTAC 59.119 47.826 0.00 0.00 0.00 3.34
486 1718 3.524380 ACCATAACCAAAGAATCCCGGTA 59.476 43.478 0.00 0.00 0.00 4.02
487 1719 2.310647 ACCATAACCAAAGAATCCCGGT 59.689 45.455 0.00 0.00 0.00 5.28
488 1720 2.949644 GACCATAACCAAAGAATCCCGG 59.050 50.000 0.00 0.00 0.00 5.73
489 1721 2.949644 GGACCATAACCAAAGAATCCCG 59.050 50.000 0.00 0.00 0.00 5.14
490 1722 4.079730 AGAGGACCATAACCAAAGAATCCC 60.080 45.833 0.00 0.00 0.00 3.85
491 1723 5.104318 AGAGAGGACCATAACCAAAGAATCC 60.104 44.000 0.00 0.00 0.00 3.01
492 1724 5.995446 AGAGAGGACCATAACCAAAGAATC 58.005 41.667 0.00 0.00 0.00 2.52
493 1725 6.443849 TGTAGAGAGGACCATAACCAAAGAAT 59.556 38.462 0.00 0.00 0.00 2.40
494 1726 5.783360 TGTAGAGAGGACCATAACCAAAGAA 59.217 40.000 0.00 0.00 0.00 2.52
495 1727 5.338632 TGTAGAGAGGACCATAACCAAAGA 58.661 41.667 0.00 0.00 0.00 2.52
496 1728 5.677319 TGTAGAGAGGACCATAACCAAAG 57.323 43.478 0.00 0.00 0.00 2.77
497 1729 5.568023 CGTTGTAGAGAGGACCATAACCAAA 60.568 44.000 0.00 0.00 0.00 3.28
498 1730 4.081862 CGTTGTAGAGAGGACCATAACCAA 60.082 45.833 0.00 0.00 0.00 3.67
499 1731 3.446161 CGTTGTAGAGAGGACCATAACCA 59.554 47.826 0.00 0.00 0.00 3.67
500 1732 3.698040 TCGTTGTAGAGAGGACCATAACC 59.302 47.826 0.00 0.00 0.00 2.85
501 1733 4.398673 ACTCGTTGTAGAGAGGACCATAAC 59.601 45.833 0.62 0.00 40.57 1.89
502 1734 4.398358 CACTCGTTGTAGAGAGGACCATAA 59.602 45.833 0.62 0.00 40.57 1.90
503 1735 3.945921 CACTCGTTGTAGAGAGGACCATA 59.054 47.826 0.62 0.00 40.57 2.74
504 1736 2.755655 CACTCGTTGTAGAGAGGACCAT 59.244 50.000 0.62 0.00 40.57 3.55
505 1737 2.160205 CACTCGTTGTAGAGAGGACCA 58.840 52.381 0.62 0.00 40.57 4.02
506 1738 2.434428 TCACTCGTTGTAGAGAGGACC 58.566 52.381 0.62 0.00 40.57 4.46
507 1739 3.752222 TCTTCACTCGTTGTAGAGAGGAC 59.248 47.826 0.62 0.00 40.57 3.85
508 1740 4.017177 TCTTCACTCGTTGTAGAGAGGA 57.983 45.455 0.62 0.00 40.57 3.71
509 1741 4.768130 TTCTTCACTCGTTGTAGAGAGG 57.232 45.455 0.62 0.00 40.57 3.69
510 1742 5.025190 CGATTCTTCACTCGTTGTAGAGAG 58.975 45.833 0.62 0.00 40.57 3.20
511 1743 4.694037 TCGATTCTTCACTCGTTGTAGAGA 59.306 41.667 0.62 0.00 40.57 3.10
512 1744 4.971008 TCGATTCTTCACTCGTTGTAGAG 58.029 43.478 0.00 0.00 43.56 2.43
513 1745 4.694037 TCTCGATTCTTCACTCGTTGTAGA 59.306 41.667 0.00 0.00 36.33 2.59
514 1746 4.789119 GTCTCGATTCTTCACTCGTTGTAG 59.211 45.833 0.00 0.00 36.33 2.74
515 1747 4.379186 GGTCTCGATTCTTCACTCGTTGTA 60.379 45.833 0.00 0.00 36.33 2.41
516 1748 3.566523 GTCTCGATTCTTCACTCGTTGT 58.433 45.455 0.00 0.00 36.33 3.32
517 1749 2.917971 GGTCTCGATTCTTCACTCGTTG 59.082 50.000 0.00 0.00 36.33 4.10
518 1750 2.820787 AGGTCTCGATTCTTCACTCGTT 59.179 45.455 0.00 0.00 36.33 3.85
519 1751 2.162608 CAGGTCTCGATTCTTCACTCGT 59.837 50.000 0.00 0.00 36.33 4.18
520 1752 2.162608 ACAGGTCTCGATTCTTCACTCG 59.837 50.000 0.00 0.00 36.25 4.18
521 1753 3.859411 ACAGGTCTCGATTCTTCACTC 57.141 47.619 0.00 0.00 0.00 3.51
522 1754 4.608948 AAACAGGTCTCGATTCTTCACT 57.391 40.909 0.00 0.00 0.00 3.41
523 1755 4.323868 CGTAAACAGGTCTCGATTCTTCAC 59.676 45.833 0.00 0.00 0.00 3.18
524 1756 4.482386 CGTAAACAGGTCTCGATTCTTCA 58.518 43.478 0.00 0.00 0.00 3.02
525 1757 3.858238 CCGTAAACAGGTCTCGATTCTTC 59.142 47.826 0.00 0.00 0.00 2.87
526 1758 3.508793 TCCGTAAACAGGTCTCGATTCTT 59.491 43.478 0.00 0.00 0.00 2.52
527 1759 3.087031 TCCGTAAACAGGTCTCGATTCT 58.913 45.455 0.00 0.00 0.00 2.40
528 1760 3.436496 CTCCGTAAACAGGTCTCGATTC 58.564 50.000 0.00 0.00 0.00 2.52
529 1761 2.165845 CCTCCGTAAACAGGTCTCGATT 59.834 50.000 0.00 0.00 0.00 3.34
530 1762 1.749634 CCTCCGTAAACAGGTCTCGAT 59.250 52.381 0.00 0.00 0.00 3.59
531 1763 1.171308 CCTCCGTAAACAGGTCTCGA 58.829 55.000 0.00 0.00 0.00 4.04
532 1764 0.886563 ACCTCCGTAAACAGGTCTCG 59.113 55.000 0.00 0.00 38.83 4.04
533 1765 1.617357 ACACCTCCGTAAACAGGTCTC 59.383 52.381 0.00 0.00 41.41 3.36
534 1766 1.343465 CACACCTCCGTAAACAGGTCT 59.657 52.381 0.00 0.00 41.41 3.85
535 1767 1.069668 ACACACCTCCGTAAACAGGTC 59.930 52.381 0.00 0.00 41.41 3.85
536 1768 1.125633 ACACACCTCCGTAAACAGGT 58.874 50.000 0.00 0.00 44.42 4.00
537 1769 2.036217 TGTACACACCTCCGTAAACAGG 59.964 50.000 0.00 0.00 35.69 4.00
538 1770 3.374220 TGTACACACCTCCGTAAACAG 57.626 47.619 0.00 0.00 0.00 3.16
539 1771 3.321396 TCATGTACACACCTCCGTAAACA 59.679 43.478 0.00 0.00 0.00 2.83
540 1772 3.916761 TCATGTACACACCTCCGTAAAC 58.083 45.455 0.00 0.00 0.00 2.01
541 1773 4.811969 ATCATGTACACACCTCCGTAAA 57.188 40.909 0.00 0.00 0.00 2.01
542 1774 4.500127 CAATCATGTACACACCTCCGTAA 58.500 43.478 0.00 0.00 0.00 3.18
543 1775 3.118920 CCAATCATGTACACACCTCCGTA 60.119 47.826 0.00 0.00 0.00 4.02
544 1776 2.354704 CCAATCATGTACACACCTCCGT 60.355 50.000 0.00 0.00 0.00 4.69
545 1777 2.093711 TCCAATCATGTACACACCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
546 1778 3.535561 CTCCAATCATGTACACACCTCC 58.464 50.000 0.00 0.00 0.00 4.30
547 1779 3.535561 CCTCCAATCATGTACACACCTC 58.464 50.000 0.00 0.00 0.00 3.85
548 1780 2.356125 GCCTCCAATCATGTACACACCT 60.356 50.000 0.00 0.00 0.00 4.00
549 1781 2.017049 GCCTCCAATCATGTACACACC 58.983 52.381 0.00 0.00 0.00 4.16
550 1782 2.991250 AGCCTCCAATCATGTACACAC 58.009 47.619 0.00 0.00 0.00 3.82
551 1783 3.430236 CGTAGCCTCCAATCATGTACACA 60.430 47.826 0.00 0.00 0.00 3.72
552 1784 3.123804 CGTAGCCTCCAATCATGTACAC 58.876 50.000 0.00 0.00 0.00 2.90
553 1785 2.102420 CCGTAGCCTCCAATCATGTACA 59.898 50.000 0.00 0.00 0.00 2.90
554 1786 2.755650 CCGTAGCCTCCAATCATGTAC 58.244 52.381 0.00 0.00 0.00 2.90
555 1787 1.070134 GCCGTAGCCTCCAATCATGTA 59.930 52.381 0.00 0.00 0.00 2.29
556 1788 0.179045 GCCGTAGCCTCCAATCATGT 60.179 55.000 0.00 0.00 0.00 3.21
557 1789 0.179048 TGCCGTAGCCTCCAATCATG 60.179 55.000 0.00 0.00 38.69 3.07
558 1790 0.546122 TTGCCGTAGCCTCCAATCAT 59.454 50.000 0.00 0.00 38.69 2.45
559 1791 0.107703 CTTGCCGTAGCCTCCAATCA 60.108 55.000 0.00 0.00 38.69 2.57
560 1792 0.178068 TCTTGCCGTAGCCTCCAATC 59.822 55.000 0.00 0.00 38.69 2.67
561 1793 0.839946 ATCTTGCCGTAGCCTCCAAT 59.160 50.000 0.00 0.00 38.69 3.16
562 1794 1.491668 TATCTTGCCGTAGCCTCCAA 58.508 50.000 0.00 0.00 38.69 3.53
563 1795 1.717032 ATATCTTGCCGTAGCCTCCA 58.283 50.000 0.00 0.00 38.69 3.86
564 1796 4.473477 AATATATCTTGCCGTAGCCTCC 57.527 45.455 0.00 0.00 38.69 4.30
565 1797 6.803154 AAAAATATATCTTGCCGTAGCCTC 57.197 37.500 0.00 0.00 38.69 4.70
566 1798 7.553044 GGATAAAAATATATCTTGCCGTAGCCT 59.447 37.037 0.00 0.00 33.96 4.58
567 1799 7.335924 TGGATAAAAATATATCTTGCCGTAGCC 59.664 37.037 0.00 0.00 33.96 3.93
568 1800 8.263940 TGGATAAAAATATATCTTGCCGTAGC 57.736 34.615 0.00 0.00 34.72 3.58
570 1802 8.714179 CGTTGGATAAAAATATATCTTGCCGTA 58.286 33.333 0.00 0.00 33.63 4.02
571 1803 7.227910 ACGTTGGATAAAAATATATCTTGCCGT 59.772 33.333 0.00 0.00 33.63 5.68
572 1804 7.533900 CACGTTGGATAAAAATATATCTTGCCG 59.466 37.037 0.00 0.00 33.63 5.69
573 1805 7.807907 CCACGTTGGATAAAAATATATCTTGCC 59.192 37.037 0.00 0.00 40.96 4.52
574 1806 7.807907 CCCACGTTGGATAAAAATATATCTTGC 59.192 37.037 0.00 0.00 40.96 4.01
575 1807 8.846211 ACCCACGTTGGATAAAAATATATCTTG 58.154 33.333 13.50 0.00 40.96 3.02
576 1808 8.846211 CACCCACGTTGGATAAAAATATATCTT 58.154 33.333 13.50 0.00 40.96 2.40
577 1809 7.447238 CCACCCACGTTGGATAAAAATATATCT 59.553 37.037 13.50 0.00 40.96 1.98
578 1810 7.590279 CCACCCACGTTGGATAAAAATATATC 58.410 38.462 13.50 0.00 40.96 1.63
579 1811 6.015772 GCCACCCACGTTGGATAAAAATATAT 60.016 38.462 13.50 0.00 40.96 0.86
580 1812 5.299782 GCCACCCACGTTGGATAAAAATATA 59.700 40.000 13.50 0.00 40.96 0.86
581 1813 4.098807 GCCACCCACGTTGGATAAAAATAT 59.901 41.667 13.50 0.00 40.96 1.28
582 1814 3.444388 GCCACCCACGTTGGATAAAAATA 59.556 43.478 13.50 0.00 40.96 1.40
583 1815 2.232696 GCCACCCACGTTGGATAAAAAT 59.767 45.455 13.50 0.00 40.96 1.82
584 1816 1.614413 GCCACCCACGTTGGATAAAAA 59.386 47.619 13.50 0.00 40.96 1.94
585 1817 1.249407 GCCACCCACGTTGGATAAAA 58.751 50.000 13.50 0.00 40.96 1.52
586 1818 0.110678 TGCCACCCACGTTGGATAAA 59.889 50.000 13.50 0.00 40.96 1.40
587 1819 0.322098 CTGCCACCCACGTTGGATAA 60.322 55.000 13.50 0.00 40.96 1.75
588 1820 1.298340 CTGCCACCCACGTTGGATA 59.702 57.895 13.50 0.00 40.96 2.59
589 1821 2.034066 CTGCCACCCACGTTGGAT 59.966 61.111 13.50 0.00 40.96 3.41
590 1822 4.947147 GCTGCCACCCACGTTGGA 62.947 66.667 13.50 0.00 40.96 3.53
592 1824 2.985282 ATGCTGCCACCCACGTTG 60.985 61.111 0.00 0.00 0.00 4.10
593 1825 2.769652 ATCATGCTGCCACCCACGTT 62.770 55.000 0.00 0.00 0.00 3.99
594 1826 3.272364 ATCATGCTGCCACCCACGT 62.272 57.895 0.00 0.00 0.00 4.49
595 1827 2.438975 ATCATGCTGCCACCCACG 60.439 61.111 0.00 0.00 0.00 4.94
596 1828 0.682209 AAGATCATGCTGCCACCCAC 60.682 55.000 0.00 0.00 0.00 4.61
597 1829 0.918258 TAAGATCATGCTGCCACCCA 59.082 50.000 0.00 0.00 0.00 4.51
598 1830 1.602311 CTAAGATCATGCTGCCACCC 58.398 55.000 0.00 0.00 0.00 4.61
599 1831 1.141657 TCCTAAGATCATGCTGCCACC 59.858 52.381 0.00 0.00 0.00 4.61
600 1832 2.627515 TCCTAAGATCATGCTGCCAC 57.372 50.000 0.00 0.00 0.00 5.01
601 1833 3.870538 AATCCTAAGATCATGCTGCCA 57.129 42.857 0.00 0.00 0.00 4.92
602 1834 4.260170 CCTAATCCTAAGATCATGCTGCC 58.740 47.826 0.00 0.00 0.00 4.85
603 1835 3.688673 GCCTAATCCTAAGATCATGCTGC 59.311 47.826 0.00 0.00 0.00 5.25
604 1836 4.260170 GGCCTAATCCTAAGATCATGCTG 58.740 47.826 0.00 0.00 0.00 4.41
605 1837 3.912528 TGGCCTAATCCTAAGATCATGCT 59.087 43.478 3.32 0.00 0.00 3.79
606 1838 4.006319 GTGGCCTAATCCTAAGATCATGC 58.994 47.826 3.32 0.00 0.00 4.06
607 1839 4.288105 AGGTGGCCTAATCCTAAGATCATG 59.712 45.833 3.32 0.00 28.47 3.07
608 1840 4.507342 AGGTGGCCTAATCCTAAGATCAT 58.493 43.478 3.32 0.00 28.47 2.45
609 1841 3.941629 AGGTGGCCTAATCCTAAGATCA 58.058 45.455 3.32 0.00 28.47 2.92
610 1842 4.348168 TGAAGGTGGCCTAATCCTAAGATC 59.652 45.833 3.32 2.38 31.13 2.75
611 1843 4.307259 TGAAGGTGGCCTAATCCTAAGAT 58.693 43.478 3.32 0.00 31.13 2.40
612 1844 3.711704 CTGAAGGTGGCCTAATCCTAAGA 59.288 47.826 3.32 0.00 31.13 2.10
613 1845 3.456277 ACTGAAGGTGGCCTAATCCTAAG 59.544 47.826 3.32 10.20 31.13 2.18
614 1846 3.460825 ACTGAAGGTGGCCTAATCCTAA 58.539 45.455 3.32 0.00 31.13 2.69
615 1847 3.130734 ACTGAAGGTGGCCTAATCCTA 57.869 47.619 3.32 0.00 31.13 2.94
616 1848 1.972588 ACTGAAGGTGGCCTAATCCT 58.027 50.000 3.32 3.81 31.13 3.24
617 1849 2.808906 AACTGAAGGTGGCCTAATCC 57.191 50.000 3.32 1.20 31.13 3.01
618 1850 3.621715 CGTAAACTGAAGGTGGCCTAATC 59.378 47.826 3.32 0.00 31.13 1.75
619 1851 3.606687 CGTAAACTGAAGGTGGCCTAAT 58.393 45.455 3.32 0.00 31.13 1.73
620 1852 2.872842 GCGTAAACTGAAGGTGGCCTAA 60.873 50.000 3.32 0.00 31.13 2.69
621 1853 1.338389 GCGTAAACTGAAGGTGGCCTA 60.338 52.381 3.32 0.00 31.13 3.93
622 1854 0.605589 GCGTAAACTGAAGGTGGCCT 60.606 55.000 3.32 0.00 33.87 5.19
623 1855 1.873863 GCGTAAACTGAAGGTGGCC 59.126 57.895 0.00 0.00 0.00 5.36
624 1856 1.226030 ACGCGTAAACTGAAGGTGGC 61.226 55.000 11.67 0.00 0.00 5.01
625 1857 1.223187 AACGCGTAAACTGAAGGTGG 58.777 50.000 14.46 0.00 0.00 4.61
626 1858 5.961395 ATATAACGCGTAAACTGAAGGTG 57.039 39.130 14.46 0.00 0.00 4.00
627 1859 7.031226 TCTATATAACGCGTAAACTGAAGGT 57.969 36.000 14.46 0.00 0.00 3.50
628 1860 7.919313 TTCTATATAACGCGTAAACTGAAGG 57.081 36.000 14.46 0.00 0.00 3.46
629 1861 9.990888 GAATTCTATATAACGCGTAAACTGAAG 57.009 33.333 14.46 4.87 0.00 3.02
630 1862 9.518906 TGAATTCTATATAACGCGTAAACTGAA 57.481 29.630 14.46 13.50 0.00 3.02
631 1863 9.687210 ATGAATTCTATATAACGCGTAAACTGA 57.313 29.630 14.46 4.32 0.00 3.41
634 1866 9.737025 GGAATGAATTCTATATAACGCGTAAAC 57.263 33.333 14.46 0.96 37.00 2.01
635 1867 9.701098 AGGAATGAATTCTATATAACGCGTAAA 57.299 29.630 14.46 3.95 37.00 2.01
636 1868 9.701098 AAGGAATGAATTCTATATAACGCGTAA 57.299 29.630 14.46 0.28 37.00 3.18
638 1870 9.871238 ATAAGGAATGAATTCTATATAACGCGT 57.129 29.630 5.58 5.58 37.00 6.01
667 1899 9.264719 CAAGTCAAAATAAAAGAAGAAGGCAAT 57.735 29.630 0.00 0.00 0.00 3.56
668 1900 7.710475 CCAAGTCAAAATAAAAGAAGAAGGCAA 59.290 33.333 0.00 0.00 0.00 4.52
669 1901 7.147742 ACCAAGTCAAAATAAAAGAAGAAGGCA 60.148 33.333 0.00 0.00 0.00 4.75
670 1902 7.169813 CACCAAGTCAAAATAAAAGAAGAAGGC 59.830 37.037 0.00 0.00 0.00 4.35
671 1903 8.197439 ACACCAAGTCAAAATAAAAGAAGAAGG 58.803 33.333 0.00 0.00 0.00 3.46
672 1904 9.023967 CACACCAAGTCAAAATAAAAGAAGAAG 57.976 33.333 0.00 0.00 0.00 2.85
673 1905 8.744652 TCACACCAAGTCAAAATAAAAGAAGAA 58.255 29.630 0.00 0.00 0.00 2.52
674 1906 8.287439 TCACACCAAGTCAAAATAAAAGAAGA 57.713 30.769 0.00 0.00 0.00 2.87
675 1907 7.649306 CCTCACACCAAGTCAAAATAAAAGAAG 59.351 37.037 0.00 0.00 0.00 2.85
676 1908 7.340743 TCCTCACACCAAGTCAAAATAAAAGAA 59.659 33.333 0.00 0.00 0.00 2.52
677 1909 6.831353 TCCTCACACCAAGTCAAAATAAAAGA 59.169 34.615 0.00 0.00 0.00 2.52
678 1910 6.918022 GTCCTCACACCAAGTCAAAATAAAAG 59.082 38.462 0.00 0.00 0.00 2.27
679 1911 6.605594 AGTCCTCACACCAAGTCAAAATAAAA 59.394 34.615 0.00 0.00 0.00 1.52
680 1912 6.126409 AGTCCTCACACCAAGTCAAAATAAA 58.874 36.000 0.00 0.00 0.00 1.40
681 1913 5.690865 AGTCCTCACACCAAGTCAAAATAA 58.309 37.500 0.00 0.00 0.00 1.40
682 1914 5.304686 AGTCCTCACACCAAGTCAAAATA 57.695 39.130 0.00 0.00 0.00 1.40
683 1915 4.170468 AGTCCTCACACCAAGTCAAAAT 57.830 40.909 0.00 0.00 0.00 1.82
684 1916 3.644966 AGTCCTCACACCAAGTCAAAA 57.355 42.857 0.00 0.00 0.00 2.44
685 1917 3.644966 AAGTCCTCACACCAAGTCAAA 57.355 42.857 0.00 0.00 0.00 2.69
686 1918 3.644966 AAAGTCCTCACACCAAGTCAA 57.355 42.857 0.00 0.00 0.00 3.18
687 1919 4.974645 ATAAAGTCCTCACACCAAGTCA 57.025 40.909 0.00 0.00 0.00 3.41
688 1920 6.935208 AGTTAATAAAGTCCTCACACCAAGTC 59.065 38.462 0.00 0.00 0.00 3.01
689 1921 6.710744 CAGTTAATAAAGTCCTCACACCAAGT 59.289 38.462 0.00 0.00 0.00 3.16
690 1922 6.710744 ACAGTTAATAAAGTCCTCACACCAAG 59.289 38.462 0.00 0.00 0.00 3.61
691 1923 6.485313 CACAGTTAATAAAGTCCTCACACCAA 59.515 38.462 0.00 0.00 0.00 3.67
692 1924 5.995282 CACAGTTAATAAAGTCCTCACACCA 59.005 40.000 0.00 0.00 0.00 4.17
693 1925 5.995897 ACACAGTTAATAAAGTCCTCACACC 59.004 40.000 0.00 0.00 0.00 4.16
694 1926 6.565999 GCACACAGTTAATAAAGTCCTCACAC 60.566 42.308 0.00 0.00 0.00 3.82
695 1927 5.468746 GCACACAGTTAATAAAGTCCTCACA 59.531 40.000 0.00 0.00 0.00 3.58
696 1928 5.468746 TGCACACAGTTAATAAAGTCCTCAC 59.531 40.000 0.00 0.00 0.00 3.51
697 1929 5.616270 TGCACACAGTTAATAAAGTCCTCA 58.384 37.500 0.00 0.00 0.00 3.86
698 1930 6.595716 AGATGCACACAGTTAATAAAGTCCTC 59.404 38.462 0.00 0.00 0.00 3.71
699 1931 6.476378 AGATGCACACAGTTAATAAAGTCCT 58.524 36.000 0.00 0.00 0.00 3.85
700 1932 6.743575 AGATGCACACAGTTAATAAAGTCC 57.256 37.500 0.00 0.00 0.00 3.85
719 1951 3.438087 CCGGCCTCTGCATAATTAAGATG 59.562 47.826 0.00 0.00 40.13 2.90
720 1952 3.560025 CCCGGCCTCTGCATAATTAAGAT 60.560 47.826 0.00 0.00 40.13 2.40
721 1953 2.224523 CCCGGCCTCTGCATAATTAAGA 60.225 50.000 0.00 0.00 40.13 2.10
722 1954 2.154462 CCCGGCCTCTGCATAATTAAG 58.846 52.381 0.00 0.00 40.13 1.85
723 1955 1.493022 ACCCGGCCTCTGCATAATTAA 59.507 47.619 0.00 0.00 40.13 1.40
724 1956 1.136828 ACCCGGCCTCTGCATAATTA 58.863 50.000 0.00 0.00 40.13 1.40
725 1957 0.466189 CACCCGGCCTCTGCATAATT 60.466 55.000 0.00 0.00 40.13 1.40
726 1958 1.149174 CACCCGGCCTCTGCATAAT 59.851 57.895 0.00 0.00 40.13 1.28
727 1959 2.589540 CACCCGGCCTCTGCATAA 59.410 61.111 0.00 0.00 40.13 1.90
728 1960 4.175337 GCACCCGGCCTCTGCATA 62.175 66.667 0.00 0.00 40.13 3.14
732 1964 3.136123 CATTGCACCCGGCCTCTG 61.136 66.667 0.00 0.00 43.89 3.35
735 1967 2.779742 TTAAGCATTGCACCCGGCCT 62.780 55.000 11.91 0.00 43.89 5.19
736 1968 1.882989 TTTAAGCATTGCACCCGGCC 61.883 55.000 11.91 0.00 43.89 6.13
737 1969 0.735978 GTTTAAGCATTGCACCCGGC 60.736 55.000 11.91 0.00 45.13 6.13
738 1970 0.108851 GGTTTAAGCATTGCACCCGG 60.109 55.000 11.91 0.00 0.00 5.73
739 1971 0.887933 AGGTTTAAGCATTGCACCCG 59.112 50.000 11.91 0.00 33.27 5.28
740 1972 3.401033 AAAGGTTTAAGCATTGCACCC 57.599 42.857 11.91 2.98 33.27 4.61
741 1973 5.989168 ACTTAAAAGGTTTAAGCATTGCACC 59.011 36.000 16.65 9.48 35.88 5.01
742 1974 8.582433 TTACTTAAAAGGTTTAAGCATTGCAC 57.418 30.769 16.65 0.00 35.88 4.57
748 1980 9.615295 CGCTTTATTACTTAAAAGGTTTAAGCA 57.385 29.630 16.65 5.22 35.88 3.91
749 1981 8.581263 GCGCTTTATTACTTAAAAGGTTTAAGC 58.419 33.333 16.65 0.00 35.88 3.09
750 1982 9.069078 GGCGCTTTATTACTTAAAAGGTTTAAG 57.931 33.333 7.64 15.59 37.84 1.85
751 1983 8.028354 GGGCGCTTTATTACTTAAAAGGTTTAA 58.972 33.333 7.64 0.00 34.07 1.52
752 1984 7.362834 GGGGCGCTTTATTACTTAAAAGGTTTA 60.363 37.037 7.64 0.00 34.07 2.01
753 1985 6.392354 GGGCGCTTTATTACTTAAAAGGTTT 58.608 36.000 7.64 0.00 34.07 3.27
754 1986 5.105635 GGGGCGCTTTATTACTTAAAAGGTT 60.106 40.000 7.64 0.00 34.07 3.50
755 1987 4.400251 GGGGCGCTTTATTACTTAAAAGGT 59.600 41.667 7.64 0.00 34.07 3.50
756 1988 4.643334 AGGGGCGCTTTATTACTTAAAAGG 59.357 41.667 7.64 0.00 34.07 3.11
757 1989 5.830000 AGGGGCGCTTTATTACTTAAAAG 57.170 39.130 7.64 0.00 36.09 2.27
758 1990 6.593268 AAAGGGGCGCTTTATTACTTAAAA 57.407 33.333 25.79 0.00 29.52 1.52
759 1991 6.593268 AAAAGGGGCGCTTTATTACTTAAA 57.407 33.333 26.94 0.00 0.00 1.52
760 1992 5.163733 CGAAAAGGGGCGCTTTATTACTTAA 60.164 40.000 26.94 0.00 0.00 1.85
761 1993 4.333372 CGAAAAGGGGCGCTTTATTACTTA 59.667 41.667 26.94 0.00 0.00 2.24
762 1994 3.128068 CGAAAAGGGGCGCTTTATTACTT 59.872 43.478 26.94 12.46 0.00 2.24
763 1995 2.681344 CGAAAAGGGGCGCTTTATTACT 59.319 45.455 26.94 13.15 0.00 2.24
764 1996 2.679336 TCGAAAAGGGGCGCTTTATTAC 59.321 45.455 26.94 17.42 0.00 1.89
765 1997 2.988570 TCGAAAAGGGGCGCTTTATTA 58.011 42.857 26.94 13.79 0.00 0.98
766 1998 1.828979 TCGAAAAGGGGCGCTTTATT 58.171 45.000 26.94 14.56 0.00 1.40
767 1999 1.743394 CTTCGAAAAGGGGCGCTTTAT 59.257 47.619 26.94 17.61 0.00 1.40
768 2000 1.161843 CTTCGAAAAGGGGCGCTTTA 58.838 50.000 26.94 11.41 0.00 1.85
769 2001 0.536460 TCTTCGAAAAGGGGCGCTTT 60.536 50.000 22.23 22.23 33.03 3.51
770 2002 0.536460 TTCTTCGAAAAGGGGCGCTT 60.536 50.000 11.46 11.46 33.03 4.68
771 2003 0.536460 TTTCTTCGAAAAGGGGCGCT 60.536 50.000 7.64 0.00 33.03 5.92
772 2004 0.312729 TTTTCTTCGAAAAGGGGCGC 59.687 50.000 0.00 0.00 33.03 6.53
773 2005 2.785713 TTTTTCTTCGAAAAGGGGCG 57.214 45.000 0.00 0.00 33.03 6.13
838 2070 2.635338 GTGTCCCGCGTTTTGGTC 59.365 61.111 4.92 0.00 0.00 4.02
860 2092 0.681564 TGGAAGGTTTTGGCGTGTGT 60.682 50.000 0.00 0.00 0.00 3.72
861 2093 0.457851 TTGGAAGGTTTTGGCGTGTG 59.542 50.000 0.00 0.00 0.00 3.82
862 2094 1.134936 GTTTGGAAGGTTTTGGCGTGT 60.135 47.619 0.00 0.00 0.00 4.49
876 2108 0.751277 CTGGGCACTGTGTGTTTGGA 60.751 55.000 9.86 0.00 35.75 3.53
889 2121 2.446435 GTCTGATTTTTAGGCTGGGCA 58.554 47.619 0.00 0.00 0.00 5.36
899 2131 3.506067 GGTTGGTGATCCGTCTGATTTTT 59.494 43.478 0.00 0.00 32.41 1.94
904 2136 0.834261 TGGGTTGGTGATCCGTCTGA 60.834 55.000 0.00 0.00 36.30 3.27
943 2175 3.569701 AGGTTTATGTTGCAGGAAGTGTG 59.430 43.478 0.00 0.00 0.00 3.82
950 2184 1.474077 GCCTGAGGTTTATGTTGCAGG 59.526 52.381 0.00 0.00 44.32 4.85
954 2188 2.416547 CGTCAGCCTGAGGTTTATGTTG 59.583 50.000 6.25 0.00 0.00 3.33
959 2193 0.320421 GTGCGTCAGCCTGAGGTTTA 60.320 55.000 15.20 1.03 44.33 2.01
980 2214 0.768846 GACGTGACAGAACGAACGAC 59.231 55.000 0.00 0.00 46.49 4.34
983 2217 2.693797 TAGGACGTGACAGAACGAAC 57.306 50.000 0.00 0.00 46.49 3.95
984 2218 4.696877 TCTTATAGGACGTGACAGAACGAA 59.303 41.667 0.00 0.00 46.49 3.85
991 2225 5.337554 CAATCGTTCTTATAGGACGTGACA 58.662 41.667 7.34 0.00 0.00 3.58
1001 2235 5.177725 TCTAGTGCGCAATCGTTCTTATA 57.822 39.130 16.15 0.00 38.14 0.98
1007 2241 1.790755 TGTTCTAGTGCGCAATCGTT 58.209 45.000 16.15 0.00 38.14 3.85
1012 2246 2.162319 TGTGATGTTCTAGTGCGCAA 57.838 45.000 14.00 0.00 0.00 4.85
1029 2263 3.750130 GCTTGTGTTGATCTCTGTGATGT 59.250 43.478 0.00 0.00 35.14 3.06
1072 2306 2.580815 CATGCCGAGTGGAGCTCA 59.419 61.111 17.19 0.00 44.33 4.26
1081 2315 0.322456 TTGGAGGAAACCATGCCGAG 60.322 55.000 0.00 0.00 39.82 4.63
1104 2338 0.310854 CCAAGAAAAGAAGCGCGGTT 59.689 50.000 25.34 25.34 0.00 4.44
1120 2354 2.598394 GAACAGCAGCAGGGCCAA 60.598 61.111 6.18 0.00 0.00 4.52
1126 2360 2.858868 GCACGAGAACAGCAGCAG 59.141 61.111 0.00 0.00 0.00 4.24
1191 2425 2.287457 CTTCGGCCGGGTAATCGTCA 62.287 60.000 27.83 0.00 0.00 4.35
1269 2509 3.706373 ATGGGCGGCAGTTCGACT 61.706 61.111 12.47 0.00 38.41 4.18
1387 2642 1.664965 GACGGCACACACTGTCTCC 60.665 63.158 0.00 0.00 41.80 3.71
1388 2643 1.664965 GGACGGCACACACTGTCTC 60.665 63.158 0.00 0.00 44.03 3.36
1391 2646 2.108976 CTGGACGGCACACACTGT 59.891 61.111 0.00 0.00 0.00 3.55
1392 2647 2.666190 CCTGGACGGCACACACTG 60.666 66.667 0.00 0.00 0.00 3.66
1406 2661 1.072965 ACAAGACCTCAAAGGAGCCTG 59.927 52.381 0.00 0.00 37.67 4.85
1407 2662 1.439543 ACAAGACCTCAAAGGAGCCT 58.560 50.000 0.00 0.00 37.67 4.58
1408 2663 3.636153 ATACAAGACCTCAAAGGAGCC 57.364 47.619 0.00 0.00 37.67 4.70
1409 2664 4.113354 CGTATACAAGACCTCAAAGGAGC 58.887 47.826 3.32 0.00 37.67 4.70
1410 2665 5.326200 ACGTATACAAGACCTCAAAGGAG 57.674 43.478 3.32 0.00 37.67 3.69
1411 2666 5.011329 ACAACGTATACAAGACCTCAAAGGA 59.989 40.000 3.32 0.00 37.67 3.36
1412 2667 5.235516 ACAACGTATACAAGACCTCAAAGG 58.764 41.667 3.32 0.00 42.49 3.11
1413 2668 6.309737 GGTACAACGTATACAAGACCTCAAAG 59.690 42.308 3.32 0.00 0.00 2.77
1414 2669 6.158598 GGTACAACGTATACAAGACCTCAAA 58.841 40.000 3.32 0.00 0.00 2.69
1415 2670 5.619757 CGGTACAACGTATACAAGACCTCAA 60.620 44.000 3.32 0.00 0.00 3.02
1416 2671 4.142622 CGGTACAACGTATACAAGACCTCA 60.143 45.833 3.32 0.00 0.00 3.86
1417 2672 4.142600 ACGGTACAACGTATACAAGACCTC 60.143 45.833 3.32 0.00 46.58 3.85
1418 2673 3.758554 ACGGTACAACGTATACAAGACCT 59.241 43.478 3.32 0.00 46.58 3.85
1419 2674 4.096732 ACGGTACAACGTATACAAGACC 57.903 45.455 3.32 2.08 46.58 3.85
1456 2711 2.587753 CGCACGAACACCACAGGT 60.588 61.111 0.00 0.00 35.62 4.00
1457 2712 2.279851 TCGCACGAACACCACAGG 60.280 61.111 0.00 0.00 0.00 4.00
1458 2713 2.594962 GGTCGCACGAACACCACAG 61.595 63.158 2.65 0.00 0.00 3.66
1459 2714 2.581208 AAGGTCGCACGAACACCACA 62.581 55.000 11.12 0.00 33.52 4.17
1460 2715 1.828331 GAAGGTCGCACGAACACCAC 61.828 60.000 11.12 0.00 33.52 4.16
1461 2716 1.593209 GAAGGTCGCACGAACACCA 60.593 57.895 11.12 0.00 33.52 4.17
1462 2717 2.654912 CGAAGGTCGCACGAACACC 61.655 63.158 11.12 0.94 33.52 4.16
1463 2718 1.947642 ACGAAGGTCGCACGAACAC 60.948 57.895 11.12 3.28 45.12 3.32
1464 2719 1.947146 CACGAAGGTCGCACGAACA 60.947 57.895 11.12 0.00 45.12 3.18
1465 2720 2.844146 CACGAAGGTCGCACGAAC 59.156 61.111 0.00 0.00 45.12 3.95
1466 2721 3.033764 GCACGAAGGTCGCACGAA 61.034 61.111 0.00 0.00 45.12 3.85
1469 2724 3.764049 GTCGCACGAAGGTCGCAC 61.764 66.667 0.00 0.00 45.12 5.34
1471 2726 2.807631 TAAGGTCGCACGAAGGTCGC 62.808 60.000 0.00 0.00 45.12 5.19
1472 2727 0.179145 ATAAGGTCGCACGAAGGTCG 60.179 55.000 0.00 0.00 46.93 4.79
1473 2728 1.659098 CAATAAGGTCGCACGAAGGTC 59.341 52.381 0.00 0.00 0.00 3.85
1474 2729 1.674817 CCAATAAGGTCGCACGAAGGT 60.675 52.381 0.00 0.00 0.00 3.50
1475 2730 1.006832 CCAATAAGGTCGCACGAAGG 58.993 55.000 0.00 0.00 0.00 3.46
1476 2731 2.004583 TCCAATAAGGTCGCACGAAG 57.995 50.000 0.00 0.00 39.02 3.79
1483 2738 6.018751 CACTGTATCACAATCCAATAAGGTCG 60.019 42.308 0.00 0.00 39.02 4.79
1564 2819 2.357009 CCTTCTAACAGATGCCATGTGC 59.643 50.000 1.08 0.00 41.77 4.57
1586 2841 1.902508 TCCGCAACAATCCTCTCTCTT 59.097 47.619 0.00 0.00 0.00 2.85
1614 2870 4.221703 CCCTCGAGGCTCAATAATACATCT 59.778 45.833 26.87 0.00 0.00 2.90
1677 2933 4.456662 TCCTACCTTATCTCCAGGAGAC 57.543 50.000 22.34 0.00 41.76 3.36
1974 3232 1.945354 CTCGACCACGGCTACACCAT 61.945 60.000 0.00 0.00 39.03 3.55
2175 3433 1.033746 TCGTCTACGATGTGTCCCCC 61.034 60.000 0.14 0.00 44.22 5.40
2281 3539 3.608662 GTCCACGACGTGTCCCCA 61.609 66.667 25.18 2.36 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.