Multiple sequence alignment - TraesCS2D01G184200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G184200 chr2D 100.000 2871 0 0 1 2871 129347629 129350499 0.000000e+00 5302.0
1 TraesCS2D01G184200 chr2D 100.000 2019 0 0 3244 5262 129350872 129352890 0.000000e+00 3729.0
2 TraesCS2D01G184200 chr2D 90.892 538 41 3 3543 4079 129351033 129351563 0.000000e+00 715.0
3 TraesCS2D01G184200 chr2D 90.892 538 41 3 3405 3935 129351171 129351707 0.000000e+00 715.0
4 TraesCS2D01G184200 chr2D 82.552 384 49 10 4867 5248 129788745 129789112 6.570000e-84 322.0
5 TraesCS2D01G184200 chr2D 87.770 139 17 0 3257 3395 129350333 129350471 4.220000e-36 163.0
6 TraesCS2D01G184200 chr2D 87.770 139 17 0 2705 2843 129350885 129351023 4.220000e-36 163.0
7 TraesCS2D01G184200 chr2D 95.876 97 4 0 3304 3400 129350872 129350968 1.960000e-34 158.0
8 TraesCS2D01G184200 chr2D 95.876 97 4 0 3244 3340 129350932 129351028 1.960000e-34 158.0
9 TraesCS2D01G184200 chr2D 82.418 91 12 4 5170 5258 129798905 129798993 5.650000e-10 76.8
10 TraesCS2D01G184200 chr2B 93.846 2421 115 17 471 2871 182931124 182933530 0.000000e+00 3615.0
11 TraesCS2D01G184200 chr2B 94.869 916 39 5 3576 4484 182934562 182935476 0.000000e+00 1424.0
12 TraesCS2D01G184200 chr2B 90.693 505 39 3 3438 3935 182934562 182935065 0.000000e+00 665.0
13 TraesCS2D01G184200 chr2B 89.344 366 31 3 3715 4079 182934563 182934921 2.230000e-123 453.0
14 TraesCS2D01G184200 chr2B 87.532 393 38 7 4874 5262 183128777 183129162 1.340000e-120 444.0
15 TraesCS2D01G184200 chr2B 85.922 412 44 5 3404 3802 182934666 182935076 1.350000e-115 427.0
16 TraesCS2D01G184200 chr2B 86.146 397 39 12 4874 5262 183060400 183060788 1.050000e-111 414.0
17 TraesCS2D01G184200 chr2B 84.758 433 23 10 4830 5260 182935877 182936268 1.370000e-105 394.0
18 TraesCS2D01G184200 chr2B 88.657 335 13 4 4482 4801 182935568 182935892 8.270000e-103 385.0
19 TraesCS2D01G184200 chr2B 83.503 394 36 14 4874 5262 182959199 182959568 1.810000e-89 340.0
20 TraesCS2D01G184200 chr2B 88.210 229 22 3 189 414 182928795 182929021 8.690000e-68 268.0
21 TraesCS2D01G184200 chr2B 85.375 253 31 1 3404 3650 182934810 182935062 1.880000e-64 257.0
22 TraesCS2D01G184200 chr2B 89.510 143 15 0 3246 3388 182933413 182933555 1.160000e-41 182.0
23 TraesCS2D01G184200 chr2B 81.385 231 26 6 188 414 182930778 182930995 7.010000e-39 172.0
24 TraesCS2D01G184200 chr2B 88.636 132 14 1 1 131 182930630 182930761 5.450000e-35 159.0
25 TraesCS2D01G184200 chr2B 98.630 73 0 1 411 483 182931037 182931108 1.540000e-25 128.0
26 TraesCS2D01G184200 chr2B 92.941 85 6 0 3244 3328 182933471 182933555 1.990000e-24 124.0
27 TraesCS2D01G184200 chr2B 96.000 75 3 0 2705 2779 182933484 182933558 7.160000e-24 122.0
28 TraesCS2D01G184200 chr2B 87.273 110 10 4 5142 5248 183198986 183199094 7.160000e-24 122.0
29 TraesCS2D01G184200 chr2B 86.607 112 11 2 15 122 182928656 182928767 2.570000e-23 121.0
30 TraesCS2D01G184200 chr2B 88.235 68 2 1 410 471 182929058 182929125 5.650000e-10 76.8
31 TraesCS2D01G184200 chr2A 92.468 2496 123 21 410 2871 136121043 136123507 0.000000e+00 3507.0
32 TraesCS2D01G184200 chr2A 93.654 520 22 4 4059 4569 136124877 136125394 0.000000e+00 767.0
33 TraesCS2D01G184200 chr2A 87.549 257 18 10 4886 5140 136125386 136125630 8.620000e-73 285.0
34 TraesCS2D01G184200 chr2A 86.111 144 20 0 3257 3400 136123341 136123484 7.060000e-34 156.0
35 TraesCS2D01G184200 chr2A 88.800 125 14 0 3244 3368 136123388 136123512 2.540000e-33 154.0
36 TraesCS2D01G184200 chr2A 96.970 66 2 0 63 128 136117432 136117497 1.550000e-20 111.0
37 TraesCS2D01G184200 chr2A 84.874 119 9 6 5142 5259 136125692 136125802 1.550000e-20 111.0
38 TraesCS2D01G184200 chr2A 95.385 65 3 0 3244 3308 136123448 136123512 2.590000e-18 104.0
39 TraesCS2D01G184200 chr2A 92.593 54 3 1 2703 2756 136123460 136123512 5.650000e-10 76.8
40 TraesCS2D01G184200 chr3A 81.481 135 23 1 1 133 13513088 13512954 5.570000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G184200 chr2D 129347629 129352890 5261 False 1387.875000 5302 93.634500 1 5262 8 chr2D.!!$F3 5261
1 TraesCS2D01G184200 chr2B 182928656 182936268 7612 False 527.811765 3615 89.624588 1 5260 17 chr2B.!!$F5 5259
2 TraesCS2D01G184200 chr2A 136117432 136125802 8370 False 585.755556 3507 90.933778 63 5259 9 chr2A.!!$F1 5196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 6365 0.468226 TTCTTCTTCAGTGCCCGTGT 59.532 50.000 0.0 0.0 0.00 4.49 F
992 6380 0.537188 CGTGTTCTGTAGCAGGGGAT 59.463 55.000 0.0 0.0 31.51 3.85 F
1851 7254 1.205655 GCAAGCATCTTCCCTTTTCCC 59.794 52.381 0.0 0.0 0.00 3.97 F
3480 8893 0.034896 ACCGGCAGTTTCAGTAGTGG 59.965 55.000 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2568 7981 0.112995 ACCATTGCCCGCATATCCAT 59.887 50.0 0.00 0.00 0.00 3.41 R
2613 8026 0.255890 ACCATATCCACCACCACTGC 59.744 55.0 0.00 0.00 0.00 4.40 R
3531 8944 0.033601 GGCACCATACATGTTGGGGA 60.034 55.0 24.71 0.97 40.29 4.81 R
5172 11522 0.104855 CAGTGCCTAGCCTATCGCAA 59.895 55.0 0.00 0.00 41.38 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.402192 GCAAGATGAGCGCGTAGA 57.598 55.556 8.43 0.00 0.00 2.59
18 19 2.665777 GCAAGATGAGCGCGTAGAA 58.334 52.632 8.43 0.00 0.00 2.10
26 27 0.863144 GAGCGCGTAGAAAACCACAA 59.137 50.000 8.43 0.00 0.00 3.33
30 31 1.003331 CGCGTAGAAAACCACAAGCAA 60.003 47.619 0.00 0.00 0.00 3.91
31 32 2.539953 CGCGTAGAAAACCACAAGCAAA 60.540 45.455 0.00 0.00 0.00 3.68
32 33 2.787129 GCGTAGAAAACCACAAGCAAAC 59.213 45.455 0.00 0.00 0.00 2.93
154 158 7.615365 TGTGGGAAGCATAATTTTAACATCTCT 59.385 33.333 0.00 0.00 0.00 3.10
179 183 6.385649 TTTTTAGGCAAACATCTCGTTTCT 57.614 33.333 0.00 0.00 44.78 2.52
180 184 5.607119 TTTAGGCAAACATCTCGTTTCTC 57.393 39.130 0.00 0.00 44.78 2.87
181 185 2.427506 AGGCAAACATCTCGTTTCTCC 58.572 47.619 0.00 0.00 44.78 3.71
182 186 2.151202 GGCAAACATCTCGTTTCTCCA 58.849 47.619 0.00 0.00 44.78 3.86
183 187 2.095718 GGCAAACATCTCGTTTCTCCAC 60.096 50.000 0.00 0.00 44.78 4.02
184 188 2.808543 GCAAACATCTCGTTTCTCCACT 59.191 45.455 0.00 0.00 44.78 4.00
185 189 3.364366 GCAAACATCTCGTTTCTCCACTG 60.364 47.826 0.00 0.00 44.78 3.66
186 190 2.751166 ACATCTCGTTTCTCCACTGG 57.249 50.000 0.00 0.00 0.00 4.00
187 191 1.276421 ACATCTCGTTTCTCCACTGGG 59.724 52.381 0.00 0.00 0.00 4.45
197 201 2.517959 TCTCCACTGGGCAAGAATTTG 58.482 47.619 0.00 0.00 37.36 2.32
199 203 1.146774 TCCACTGGGCAAGAATTTGGA 59.853 47.619 0.00 0.00 34.79 3.53
206 210 2.369394 GGCAAGAATTTGGATCGACCT 58.631 47.619 0.00 0.00 39.86 3.85
214 218 6.653989 AGAATTTGGATCGACCTGAAATACT 58.346 36.000 0.00 0.00 39.86 2.12
215 219 6.763610 AGAATTTGGATCGACCTGAAATACTC 59.236 38.462 0.00 0.00 39.86 2.59
218 222 5.201713 TGGATCGACCTGAAATACTCATC 57.798 43.478 0.00 0.00 39.86 2.92
221 225 3.284617 TCGACCTGAAATACTCATCGGA 58.715 45.455 0.00 0.00 37.23 4.55
231 235 5.359194 AATACTCATCGGACCAACAAGAT 57.641 39.130 0.00 0.00 0.00 2.40
234 238 2.932614 CTCATCGGACCAACAAGATCAC 59.067 50.000 0.00 0.00 0.00 3.06
239 243 2.289072 CGGACCAACAAGATCACTGACT 60.289 50.000 0.00 0.00 0.00 3.41
257 261 8.523658 TCACTGACTATTCTTTATATGGATCGG 58.476 37.037 0.00 0.00 0.00 4.18
284 288 1.098050 CCTCTCAAATTGGCCTTCGG 58.902 55.000 3.32 0.00 0.00 4.30
285 289 1.098050 CTCTCAAATTGGCCTTCGGG 58.902 55.000 3.32 0.00 38.37 5.14
333 337 4.988598 CGGATCGGCCCATTCCCG 62.989 72.222 0.00 0.00 46.88 5.14
346 350 2.180159 ATTCCCGTCCTGACCCAACG 62.180 60.000 0.00 0.00 36.22 4.10
350 354 2.668550 GTCCTGACCCAACGGTGC 60.669 66.667 0.00 0.00 44.88 5.01
385 3709 1.272480 GGGTCCTTTGTGCATAAGGGT 60.272 52.381 21.19 0.00 42.02 4.34
386 3710 2.525368 GGTCCTTTGTGCATAAGGGTT 58.475 47.619 21.19 0.00 42.02 4.11
402 3726 1.268113 GGTTGACGCGTGTGCAATTG 61.268 55.000 20.70 0.00 42.97 2.32
454 5804 5.719173 TGAAAAATAAAAATCGAGGCCCTG 58.281 37.500 0.00 0.00 0.00 4.45
502 5880 4.652679 AGGGTTTAACAGGAAGGTTAGG 57.347 45.455 0.00 0.00 34.92 2.69
505 5883 4.287845 GGGTTTAACAGGAAGGTTAGGAGA 59.712 45.833 0.00 0.00 34.92 3.71
506 5884 5.489249 GGTTTAACAGGAAGGTTAGGAGAG 58.511 45.833 0.00 0.00 34.92 3.20
507 5885 4.820894 TTAACAGGAAGGTTAGGAGAGC 57.179 45.455 0.00 0.00 34.92 4.09
578 5959 2.203938 TCCCTCCACTCCCACCAC 60.204 66.667 0.00 0.00 0.00 4.16
649 6030 2.417936 GGACGCGAATCCCCTCTC 59.582 66.667 15.93 0.00 31.94 3.20
703 6084 1.424638 CGGTAAGGATCATGGACCCT 58.575 55.000 6.22 0.00 0.00 4.34
704 6085 2.605257 CGGTAAGGATCATGGACCCTA 58.395 52.381 6.22 0.00 0.00 3.53
729 6112 1.451067 CTCGGAGTACTGTTCGTCCT 58.549 55.000 0.00 0.00 0.00 3.85
750 6133 2.187599 CTCCTGCCTTTTCGTTGCCG 62.188 60.000 0.00 0.00 0.00 5.69
810 6193 3.217626 GGGTTCCATTTCCTGCATCTAG 58.782 50.000 0.00 0.00 0.00 2.43
823 6206 5.127194 TCCTGCATCTAGAACGAATTAGTGT 59.873 40.000 0.00 0.00 0.00 3.55
827 6210 7.097192 TGCATCTAGAACGAATTAGTGTTTCT 58.903 34.615 0.00 0.00 0.00 2.52
884 6272 5.367937 TGATTTGAGAAAATTTGGGGGTTCA 59.632 36.000 0.00 0.00 0.00 3.18
896 6284 1.077716 GGGTTCAACTGGATCCCCG 60.078 63.158 9.90 2.65 46.12 5.73
942 6330 2.481969 GCAGCCGTGAATCTGTCTCATA 60.482 50.000 0.00 0.00 33.09 2.15
977 6365 0.468226 TTCTTCTTCAGTGCCCGTGT 59.532 50.000 0.00 0.00 0.00 4.49
992 6380 0.537188 CGTGTTCTGTAGCAGGGGAT 59.463 55.000 0.00 0.00 31.51 3.85
995 6383 3.010420 GTGTTCTGTAGCAGGGGATTTC 58.990 50.000 0.00 0.00 31.51 2.17
997 6385 4.081087 GTGTTCTGTAGCAGGGGATTTCTA 60.081 45.833 0.00 0.00 31.51 2.10
1003 6391 2.119495 AGCAGGGGATTTCTACGATGT 58.881 47.619 0.00 0.00 0.00 3.06
1146 6534 4.774726 TGAGATCACTGTTCTAGCTCCTTT 59.225 41.667 0.00 0.00 0.00 3.11
1184 6572 4.083581 GCATATTATTGATGCCGGTGAC 57.916 45.455 1.90 0.00 43.24 3.67
1189 6577 7.362056 GCATATTATTGATGCCGGTGACTTATT 60.362 37.037 1.90 0.00 43.24 1.40
1199 6587 7.254227 TGCCGGTGACTTATTTAATTACATC 57.746 36.000 1.90 0.00 0.00 3.06
1217 6605 9.588096 AATTACATCTCTGTTTTACCTCCTTTT 57.412 29.630 0.00 0.00 36.79 2.27
1308 6696 4.600692 AGGTTGTTTTCCCAATTAGTGC 57.399 40.909 0.00 0.00 0.00 4.40
1335 6724 9.316730 GACACATTTGATGTATATTTTTGCCAT 57.683 29.630 0.00 0.00 42.70 4.40
1336 6725 9.100554 ACACATTTGATGTATATTTTTGCCATG 57.899 29.630 0.00 0.00 42.70 3.66
1337 6726 9.100554 CACATTTGATGTATATTTTTGCCATGT 57.899 29.630 0.00 0.00 42.70 3.21
1416 6805 1.973812 GTCTGGCAGGTCAAAGGGC 60.974 63.158 15.73 0.00 0.00 5.19
1440 6829 7.260603 GCTTTGGATTTGTTACTTATGCATCT 58.739 34.615 0.19 0.00 0.00 2.90
1443 6832 8.800370 TTGGATTTGTTACTTATGCATCTACA 57.200 30.769 0.19 0.00 0.00 2.74
1505 6894 7.404396 CAGGGTGATTTTAGAGATATCCCCTAT 59.596 40.741 8.12 0.00 37.18 2.57
1516 6905 6.501805 AGAGATATCCCCTATGTGTTATTGCA 59.498 38.462 0.00 0.00 0.00 4.08
1547 6938 7.147863 TGCTATGACATTCATGCCTATTGTTTT 60.148 33.333 0.00 0.00 37.70 2.43
1585 6976 2.095263 CCACTTTGCAAATGTAGTCCCG 60.095 50.000 13.23 0.00 31.84 5.14
1752 7155 6.351327 AGCGTTATTGTCTTGATCTAAAGC 57.649 37.500 0.00 0.00 0.00 3.51
1784 7187 7.033791 GTCTGAATTTGCATTGATTCACTGAT 58.966 34.615 13.50 0.00 37.35 2.90
1799 7202 4.650734 TCACTGATCATTAAACTGTGCCA 58.349 39.130 0.00 0.00 34.91 4.92
1819 7222 5.711506 TGCCACTCATCAATTTATGTTCTGT 59.288 36.000 0.00 0.00 0.00 3.41
1851 7254 1.205655 GCAAGCATCTTCCCTTTTCCC 59.794 52.381 0.00 0.00 0.00 3.97
2395 7805 5.125900 TCACGGACGAATGATAAAGGTAGAA 59.874 40.000 0.00 0.00 0.00 2.10
2519 7929 2.034124 GATATGCTGGCAATGGTGGTT 58.966 47.619 0.00 0.00 0.00 3.67
2568 7981 1.843851 GGGATATGGAAGTGGTGGTGA 59.156 52.381 0.00 0.00 0.00 4.02
2613 8026 0.106569 TATGGAAGTGCAGGGCATGG 60.107 55.000 0.00 0.00 41.91 3.66
2723 8136 4.488136 CTGGTGGCTATGGCGGCA 62.488 66.667 16.34 16.34 39.81 5.69
2724 8137 3.779850 CTGGTGGCTATGGCGGCAT 62.780 63.158 28.47 28.47 41.72 4.40
2784 8197 1.595382 CTGGTAGCTATGGCGGTGC 60.595 63.158 0.00 0.00 44.37 5.01
2786 8199 1.146263 GGTAGCTATGGCGGTGCTT 59.854 57.895 0.00 0.00 44.37 3.91
2868 8281 3.885484 CGGAAGCTACAATAATGCCAG 57.115 47.619 0.00 0.00 0.00 4.85
2869 8282 2.031682 CGGAAGCTACAATAATGCCAGC 60.032 50.000 0.00 0.00 37.90 4.85
2870 8283 2.951642 GGAAGCTACAATAATGCCAGCA 59.048 45.455 7.50 0.00 39.30 4.41
3260 8673 2.743718 ACTCGGGTGGAAGTGCTG 59.256 61.111 0.00 0.00 0.00 4.41
3261 8674 2.046892 CTCGGGTGGAAGTGCTGG 60.047 66.667 0.00 0.00 0.00 4.85
3262 8675 2.847234 TCGGGTGGAAGTGCTGGT 60.847 61.111 0.00 0.00 0.00 4.00
3263 8676 2.669569 CGGGTGGAAGTGCTGGTG 60.670 66.667 0.00 0.00 0.00 4.17
3264 8677 2.282462 GGGTGGAAGTGCTGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
3265 8678 2.985847 GGTGGAAGTGCTGGTGGC 60.986 66.667 0.00 0.00 42.22 5.01
3266 8679 2.113986 GTGGAAGTGCTGGTGGCT 59.886 61.111 0.00 0.00 42.39 4.75
3267 8680 1.374947 GTGGAAGTGCTGGTGGCTA 59.625 57.895 0.00 0.00 42.39 3.93
3268 8681 0.955919 GTGGAAGTGCTGGTGGCTAC 60.956 60.000 0.00 0.00 42.39 3.58
3269 8682 1.741770 GGAAGTGCTGGTGGCTACG 60.742 63.158 0.00 0.00 42.39 3.51
3270 8683 1.741770 GAAGTGCTGGTGGCTACGG 60.742 63.158 0.00 0.00 42.39 4.02
3271 8684 3.901797 AAGTGCTGGTGGCTACGGC 62.902 63.158 9.23 9.23 42.39 5.68
3310 8723 0.255890 ATAATGCCAGCAACTCGGGT 59.744 50.000 0.00 0.00 32.16 5.28
3323 8736 2.669569 CGGGTGGAAGTGCTGGTG 60.670 66.667 0.00 0.00 0.00 4.17
3328 8741 0.955919 GTGGAAGTGCTGGTGGCTAC 60.956 60.000 0.00 0.00 42.39 3.58
3331 8744 3.901797 AAGTGCTGGTGGCTACGGC 62.902 63.158 9.23 9.23 42.39 5.68
3360 8773 3.885484 CGGAAGCTACAATAATGCCAG 57.115 47.619 0.00 0.00 0.00 4.85
3361 8774 2.031682 CGGAAGCTACAATAATGCCAGC 60.032 50.000 0.00 0.00 37.90 4.85
3362 8775 2.951642 GGAAGCTACAATAATGCCAGCA 59.048 45.455 7.50 0.00 39.30 4.41
3363 8776 3.381272 GGAAGCTACAATAATGCCAGCAA 59.619 43.478 0.00 0.00 39.30 3.91
3364 8777 4.038402 GGAAGCTACAATAATGCCAGCAAT 59.962 41.667 0.00 0.00 39.30 3.56
3365 8778 5.452356 GGAAGCTACAATAATGCCAGCAATT 60.452 40.000 0.00 0.00 39.30 2.32
3366 8779 5.192327 AGCTACAATAATGCCAGCAATTC 57.808 39.130 0.00 0.00 39.30 2.17
3367 8780 3.976942 GCTACAATAATGCCAGCAATTCG 59.023 43.478 0.00 0.00 37.68 3.34
3368 8781 3.441496 ACAATAATGCCAGCAATTCGG 57.559 42.857 0.00 0.00 0.00 4.30
3369 8782 2.101249 ACAATAATGCCAGCAATTCGGG 59.899 45.455 0.00 0.00 0.00 5.14
3370 8783 2.071778 ATAATGCCAGCAATTCGGGT 57.928 45.000 0.00 0.00 32.16 5.28
3371 8784 1.102154 TAATGCCAGCAATTCGGGTG 58.898 50.000 0.00 0.00 36.08 4.61
3375 8788 3.909662 CAGCAATTCGGGTGGAGG 58.090 61.111 0.00 0.00 32.80 4.30
3376 8789 1.002134 CAGCAATTCGGGTGGAGGT 60.002 57.895 0.00 0.00 32.80 3.85
3377 8790 1.002134 AGCAATTCGGGTGGAGGTG 60.002 57.895 0.00 0.00 0.00 4.00
3378 8791 2.700773 GCAATTCGGGTGGAGGTGC 61.701 63.158 0.00 0.00 0.00 5.01
3379 8792 1.002134 CAATTCGGGTGGAGGTGCT 60.002 57.895 0.00 0.00 0.00 4.40
3380 8793 1.002134 AATTCGGGTGGAGGTGCTG 60.002 57.895 0.00 0.00 0.00 4.41
3381 8794 2.484287 AATTCGGGTGGAGGTGCTGG 62.484 60.000 0.00 0.00 0.00 4.85
3382 8795 4.954118 TCGGGTGGAGGTGCTGGT 62.954 66.667 0.00 0.00 0.00 4.00
3383 8796 3.000819 CGGGTGGAGGTGCTGGTA 61.001 66.667 0.00 0.00 0.00 3.25
3384 8797 2.990479 GGGTGGAGGTGCTGGTAG 59.010 66.667 0.00 0.00 0.00 3.18
3385 8798 2.269241 GGTGGAGGTGCTGGTAGC 59.731 66.667 0.00 0.00 42.82 3.58
3386 8799 2.294078 GGTGGAGGTGCTGGTAGCT 61.294 63.158 2.24 0.00 42.97 3.32
3387 8800 0.976073 GGTGGAGGTGCTGGTAGCTA 60.976 60.000 2.24 0.00 42.97 3.32
3388 8801 0.175989 GTGGAGGTGCTGGTAGCTAC 59.824 60.000 15.88 15.88 42.97 3.58
3389 8802 1.320344 TGGAGGTGCTGGTAGCTACG 61.320 60.000 17.48 6.12 42.97 3.51
3390 8803 1.437986 GAGGTGCTGGTAGCTACGG 59.562 63.158 17.48 13.33 42.97 4.02
3391 8804 2.202892 GGTGCTGGTAGCTACGGC 60.203 66.667 24.33 24.33 42.97 5.68
3392 8805 2.582498 GTGCTGGTAGCTACGGCG 60.582 66.667 24.89 4.80 42.97 6.46
3393 8806 3.833645 TGCTGGTAGCTACGGCGG 61.834 66.667 24.89 16.27 42.97 6.13
3395 8808 4.925576 CTGGTAGCTACGGCGGCG 62.926 72.222 31.06 31.06 44.37 6.46
3420 8833 2.108157 CTATGGCGCGGGCAACTA 59.892 61.111 26.61 12.43 42.43 2.24
3421 8834 2.202960 TATGGCGCGGGCAACTAC 60.203 61.111 26.61 8.75 42.43 2.73
3422 8835 2.916502 CTATGGCGCGGGCAACTACA 62.917 60.000 26.61 14.47 42.43 2.74
3423 8836 2.523453 TATGGCGCGGGCAACTACAA 62.523 55.000 26.61 2.54 42.43 2.41
3424 8837 4.097863 GGCGCGGGCAACTACAAC 62.098 66.667 26.61 1.82 42.47 3.32
3425 8838 3.350612 GCGCGGGCAACTACAACA 61.351 61.111 20.76 0.00 39.62 3.33
3426 8839 2.860293 CGCGGGCAACTACAACAG 59.140 61.111 0.00 0.00 0.00 3.16
3427 8840 2.561373 GCGGGCAACTACAACAGC 59.439 61.111 0.00 0.00 0.00 4.40
3428 8841 2.860293 CGGGCAACTACAACAGCG 59.140 61.111 0.00 0.00 0.00 5.18
3429 8842 2.677003 CGGGCAACTACAACAGCGG 61.677 63.158 0.00 0.00 0.00 5.52
3430 8843 1.302192 GGGCAACTACAACAGCGGA 60.302 57.895 0.00 0.00 0.00 5.54
3431 8844 1.298859 GGGCAACTACAACAGCGGAG 61.299 60.000 0.00 0.00 0.00 4.63
3446 8859 4.189188 GAGCTGGCGGCAATGCAG 62.189 66.667 22.28 3.77 44.79 4.41
3448 8861 4.487412 GCTGGCGGCAATGCAGTC 62.487 66.667 14.48 5.02 41.35 3.51
3449 8862 2.749044 CTGGCGGCAATGCAGTCT 60.749 61.111 14.48 0.00 36.28 3.24
3450 8863 2.282391 TGGCGGCAATGCAGTCTT 60.282 55.556 10.22 0.00 36.28 3.01
3451 8864 2.262471 CTGGCGGCAATGCAGTCTTC 62.262 60.000 14.48 0.00 36.28 2.87
3452 8865 2.099062 GCGGCAATGCAGTCTTCG 59.901 61.111 7.79 0.79 34.15 3.79
3453 8866 2.787249 CGGCAATGCAGTCTTCGG 59.213 61.111 7.79 0.00 0.00 4.30
3454 8867 2.486966 GGCAATGCAGTCTTCGGC 59.513 61.111 7.79 0.00 35.44 5.54
3455 8868 2.099062 GCAATGCAGTCTTCGGCG 59.901 61.111 0.00 0.00 37.57 6.46
3456 8869 2.390599 GCAATGCAGTCTTCGGCGA 61.391 57.895 4.99 4.99 37.57 5.54
3457 8870 1.911293 GCAATGCAGTCTTCGGCGAA 61.911 55.000 22.33 22.33 37.57 4.70
3458 8871 0.516877 CAATGCAGTCTTCGGCGAAA 59.483 50.000 23.81 11.65 37.57 3.46
3459 8872 1.069296 CAATGCAGTCTTCGGCGAAAA 60.069 47.619 23.81 7.88 37.57 2.29
3460 8873 0.798776 ATGCAGTCTTCGGCGAAAAG 59.201 50.000 23.81 13.07 37.57 2.27
3461 8874 0.249699 TGCAGTCTTCGGCGAAAAGA 60.250 50.000 23.81 15.36 37.57 2.52
3470 8883 3.340789 GCGAAAAGACCGGCAGTT 58.659 55.556 0.00 0.00 0.00 3.16
3471 8884 1.652563 GCGAAAAGACCGGCAGTTT 59.347 52.632 0.00 0.00 0.00 2.66
3472 8885 0.385598 GCGAAAAGACCGGCAGTTTC 60.386 55.000 0.00 7.82 0.00 2.78
3473 8886 0.941542 CGAAAAGACCGGCAGTTTCA 59.058 50.000 18.84 0.00 31.66 2.69
3474 8887 1.069906 CGAAAAGACCGGCAGTTTCAG 60.070 52.381 18.84 10.98 31.66 3.02
3475 8888 1.947456 GAAAAGACCGGCAGTTTCAGT 59.053 47.619 15.69 0.00 31.66 3.41
3476 8889 2.922740 AAAGACCGGCAGTTTCAGTA 57.077 45.000 0.00 0.00 0.00 2.74
3477 8890 2.457366 AAGACCGGCAGTTTCAGTAG 57.543 50.000 0.00 0.00 0.00 2.57
3478 8891 1.339097 AGACCGGCAGTTTCAGTAGT 58.661 50.000 0.00 0.00 0.00 2.73
3479 8892 1.000955 AGACCGGCAGTTTCAGTAGTG 59.999 52.381 0.00 0.00 0.00 2.74
3480 8893 0.034896 ACCGGCAGTTTCAGTAGTGG 59.965 55.000 0.00 0.00 0.00 4.00
3481 8894 0.673644 CCGGCAGTTTCAGTAGTGGG 60.674 60.000 0.00 0.00 0.00 4.61
3482 8895 0.034896 CGGCAGTTTCAGTAGTGGGT 59.965 55.000 0.00 0.00 0.00 4.51
3483 8896 1.274167 CGGCAGTTTCAGTAGTGGGTA 59.726 52.381 0.00 0.00 0.00 3.69
3484 8897 2.093658 CGGCAGTTTCAGTAGTGGGTAT 60.094 50.000 0.00 0.00 0.00 2.73
3485 8898 3.618997 CGGCAGTTTCAGTAGTGGGTATT 60.619 47.826 0.00 0.00 0.00 1.89
3486 8899 3.939592 GGCAGTTTCAGTAGTGGGTATTC 59.060 47.826 0.00 0.00 0.00 1.75
3487 8900 4.323562 GGCAGTTTCAGTAGTGGGTATTCT 60.324 45.833 0.00 0.00 0.00 2.40
3488 8901 4.631813 GCAGTTTCAGTAGTGGGTATTCTG 59.368 45.833 0.00 0.96 0.00 3.02
3489 8902 4.631813 CAGTTTCAGTAGTGGGTATTCTGC 59.368 45.833 0.00 0.00 0.00 4.26
3490 8903 4.532521 AGTTTCAGTAGTGGGTATTCTGCT 59.467 41.667 0.00 0.00 0.00 4.24
3491 8904 4.471904 TTCAGTAGTGGGTATTCTGCTG 57.528 45.455 0.00 0.00 42.66 4.41
3492 8905 3.441101 TCAGTAGTGGGTATTCTGCTGT 58.559 45.455 9.28 0.00 42.21 4.40
3493 8906 3.838317 TCAGTAGTGGGTATTCTGCTGTT 59.162 43.478 9.28 0.00 42.21 3.16
3494 8907 3.935203 CAGTAGTGGGTATTCTGCTGTTG 59.065 47.826 0.00 0.00 38.76 3.33
3495 8908 1.826385 AGTGGGTATTCTGCTGTTGC 58.174 50.000 0.00 0.00 40.20 4.17
3496 8909 1.352352 AGTGGGTATTCTGCTGTTGCT 59.648 47.619 0.00 0.00 40.48 3.91
3497 8910 1.470098 GTGGGTATTCTGCTGTTGCTG 59.530 52.381 0.00 0.00 40.48 4.41
3498 8911 1.098050 GGGTATTCTGCTGTTGCTGG 58.902 55.000 0.00 0.00 40.48 4.85
3499 8912 1.614317 GGGTATTCTGCTGTTGCTGGT 60.614 52.381 0.00 0.00 40.48 4.00
3500 8913 1.470098 GGTATTCTGCTGTTGCTGGTG 59.530 52.381 0.00 0.00 40.48 4.17
3501 8914 1.470098 GTATTCTGCTGTTGCTGGTGG 59.530 52.381 0.00 0.00 40.48 4.61
3502 8915 1.530013 ATTCTGCTGTTGCTGGTGGC 61.530 55.000 0.00 0.00 40.48 5.01
3519 8932 4.688419 CAACAACGGCAGCGCTGG 62.688 66.667 36.47 23.91 39.57 4.85
3528 8941 2.594303 CAGCGCTGGTGGGAACAA 60.594 61.111 29.88 0.00 46.06 2.83
3529 8942 1.973281 CAGCGCTGGTGGGAACAAT 60.973 57.895 29.88 0.00 46.06 2.71
3530 8943 1.228552 AGCGCTGGTGGGAACAATT 60.229 52.632 10.39 0.00 46.06 2.32
3531 8944 0.827507 AGCGCTGGTGGGAACAATTT 60.828 50.000 10.39 0.00 46.06 1.82
3532 8945 0.388520 GCGCTGGTGGGAACAATTTC 60.389 55.000 0.00 0.00 46.06 2.17
3544 8957 5.675684 GGAACAATTTCCCCAACATGTAT 57.324 39.130 0.00 0.00 45.27 2.29
3545 8958 5.418676 GGAACAATTTCCCCAACATGTATG 58.581 41.667 0.00 0.00 45.27 2.39
3546 8959 5.418676 GAACAATTTCCCCAACATGTATGG 58.581 41.667 15.95 15.95 37.71 2.74
3547 8960 4.424842 ACAATTTCCCCAACATGTATGGT 58.575 39.130 19.30 2.50 36.14 3.55
3548 8961 4.222588 ACAATTTCCCCAACATGTATGGTG 59.777 41.667 19.30 12.21 44.93 4.17
3549 8962 1.846007 TTCCCCAACATGTATGGTGC 58.154 50.000 19.30 0.00 44.01 5.01
3550 8963 0.033601 TCCCCAACATGTATGGTGCC 60.034 55.000 19.30 0.00 44.01 5.01
3551 8964 1.383456 CCCCAACATGTATGGTGCCG 61.383 60.000 19.30 8.93 44.01 5.69
3552 8965 1.383456 CCCAACATGTATGGTGCCGG 61.383 60.000 19.30 0.00 44.01 6.13
3553 8966 1.433064 CAACATGTATGGTGCCGGC 59.567 57.895 22.73 22.73 38.84 6.13
3554 8967 1.001517 AACATGTATGGTGCCGGCA 60.002 52.632 29.03 29.03 0.00 5.69
3555 8968 0.610509 AACATGTATGGTGCCGGCAA 60.611 50.000 34.66 18.73 0.00 4.52
3556 8969 1.312371 ACATGTATGGTGCCGGCAAC 61.312 55.000 37.68 37.68 0.00 4.17
3557 8970 1.031571 CATGTATGGTGCCGGCAACT 61.032 55.000 41.74 29.27 34.17 3.16
3558 8971 0.544223 ATGTATGGTGCCGGCAACTA 59.456 50.000 41.74 29.04 34.17 2.24
3559 8972 0.391927 TGTATGGTGCCGGCAACTAC 60.392 55.000 41.74 35.25 34.17 2.73
3560 8973 0.391927 GTATGGTGCCGGCAACTACA 60.392 55.000 41.74 30.67 34.17 2.74
3561 8974 0.325272 TATGGTGCCGGCAACTACAA 59.675 50.000 41.74 24.99 34.17 2.41
3562 8975 1.241315 ATGGTGCCGGCAACTACAAC 61.241 55.000 41.74 23.05 34.17 3.32
3563 8976 1.894756 GGTGCCGGCAACTACAACA 60.895 57.895 37.07 4.97 0.00 3.33
3564 8977 1.574428 GTGCCGGCAACTACAACAG 59.426 57.895 34.66 0.00 0.00 3.16
3565 8978 2.258013 TGCCGGCAACTACAACAGC 61.258 57.895 30.74 0.00 0.00 4.40
3566 8979 2.860293 CCGGCAACTACAACAGCG 59.140 61.111 0.00 0.00 0.00 5.18
3567 8980 2.677003 CCGGCAACTACAACAGCGG 61.677 63.158 0.00 0.00 0.00 5.52
3568 8981 1.666553 CGGCAACTACAACAGCGGA 60.667 57.895 0.00 0.00 0.00 5.54
3569 8982 1.626654 CGGCAACTACAACAGCGGAG 61.627 60.000 0.00 0.00 0.00 4.63
3601 9773 1.270358 GCAGTCCTCGGTGAAAAGACT 60.270 52.381 0.00 0.00 38.30 3.24
3720 9892 4.189188 CGGAGCTGGCAGCAATGC 62.189 66.667 38.09 23.83 45.56 3.56
3754 9926 1.040646 AGACCGACAGTTTCAGCAGA 58.959 50.000 0.00 0.00 0.00 4.26
3765 9937 3.073650 AGTTTCAGCAGAGGGAATTCTGT 59.926 43.478 5.23 0.00 45.07 3.41
3796 9968 1.959226 CAACAACGGCGGCTACAGT 60.959 57.895 13.24 0.00 0.00 3.55
3805 9977 2.942796 CGGCTACAGTGCTGGTGGA 61.943 63.158 4.11 0.00 35.80 4.02
3940 10112 1.959226 CAACAACGGCGGCTACAGT 60.959 57.895 13.24 0.00 0.00 3.55
3944 10116 3.530910 AACGGCGGCTACAGTGCTT 62.531 57.895 13.24 0.00 0.00 3.91
4109 10287 2.319472 GAAATGTGAGCGGCAACTTTC 58.681 47.619 1.45 8.37 0.00 2.62
4287 10465 0.033504 AGTGTCGCGGAACATCTTGT 59.966 50.000 6.13 0.00 0.00 3.16
4377 10555 3.738434 TGCCTCTGGGGTAGGTTATTAA 58.262 45.455 0.00 0.00 36.43 1.40
4470 10651 1.666189 GCTTCTGGCAACGATTACTCC 59.334 52.381 0.00 0.00 41.35 3.85
4530 10804 3.057969 CCTGTTGATTAGGCTGTGTGA 57.942 47.619 0.00 0.00 0.00 3.58
4596 10870 0.107654 GCGCAGGTAAGAGGGATGTT 60.108 55.000 0.30 0.00 0.00 2.71
4601 10875 2.092212 CAGGTAAGAGGGATGTTGCCAT 60.092 50.000 0.00 0.00 31.25 4.40
4644 10932 8.947115 GTAGTCATTTGCTTTACCTCAACTTAT 58.053 33.333 0.00 0.00 0.00 1.73
4648 10936 5.514500 TTGCTTTACCTCAACTTATCCCT 57.486 39.130 0.00 0.00 0.00 4.20
4691 10980 1.331756 GCCCGCTTGTAGATTGATGTG 59.668 52.381 0.00 0.00 0.00 3.21
4739 11028 0.179161 CTGTGCTCGGTCCGTTAGAG 60.179 60.000 11.88 1.94 35.28 2.43
4772 11061 1.545841 CTAACCCTGCTTCAAACCCC 58.454 55.000 0.00 0.00 0.00 4.95
4777 11066 1.699083 CCCTGCTTCAAACCCCAATTT 59.301 47.619 0.00 0.00 0.00 1.82
4778 11067 2.289631 CCCTGCTTCAAACCCCAATTTC 60.290 50.000 0.00 0.00 0.00 2.17
4780 11069 2.035632 TGCTTCAAACCCCAATTTCGT 58.964 42.857 0.00 0.00 0.00 3.85
4788 11077 1.674322 CCCAATTTCGTGCCCGAGT 60.674 57.895 0.00 0.00 45.24 4.18
4789 11078 1.644786 CCCAATTTCGTGCCCGAGTC 61.645 60.000 0.00 0.00 45.24 3.36
4790 11079 0.673644 CCAATTTCGTGCCCGAGTCT 60.674 55.000 0.00 0.00 45.24 3.24
4791 11080 1.156736 CAATTTCGTGCCCGAGTCTT 58.843 50.000 0.00 0.00 45.24 3.01
4792 11081 2.343101 CAATTTCGTGCCCGAGTCTTA 58.657 47.619 0.00 0.00 45.24 2.10
4793 11082 2.936498 CAATTTCGTGCCCGAGTCTTAT 59.064 45.455 0.00 0.00 45.24 1.73
4794 11083 4.116961 CAATTTCGTGCCCGAGTCTTATA 58.883 43.478 0.00 0.00 45.24 0.98
4795 11084 4.602340 ATTTCGTGCCCGAGTCTTATAT 57.398 40.909 0.00 0.00 45.24 0.86
4796 11085 5.717078 ATTTCGTGCCCGAGTCTTATATA 57.283 39.130 0.00 0.00 45.24 0.86
4797 11086 5.518848 TTTCGTGCCCGAGTCTTATATAA 57.481 39.130 0.00 0.00 45.24 0.98
4798 11087 5.717078 TTCGTGCCCGAGTCTTATATAAT 57.283 39.130 0.00 0.00 45.24 1.28
4799 11088 5.306532 TCGTGCCCGAGTCTTATATAATC 57.693 43.478 0.00 0.00 38.40 1.75
4800 11089 4.763279 TCGTGCCCGAGTCTTATATAATCA 59.237 41.667 0.00 0.00 38.40 2.57
4801 11090 5.096169 CGTGCCCGAGTCTTATATAATCAG 58.904 45.833 0.00 0.00 35.63 2.90
4802 11091 5.335740 CGTGCCCGAGTCTTATATAATCAGT 60.336 44.000 0.00 0.00 35.63 3.41
4803 11092 6.456501 GTGCCCGAGTCTTATATAATCAGTT 58.543 40.000 0.00 0.00 0.00 3.16
4804 11093 6.366332 GTGCCCGAGTCTTATATAATCAGTTG 59.634 42.308 0.00 0.00 0.00 3.16
4805 11094 5.348997 GCCCGAGTCTTATATAATCAGTTGC 59.651 44.000 0.00 0.00 0.00 4.17
4806 11095 6.692486 CCCGAGTCTTATATAATCAGTTGCT 58.308 40.000 0.00 0.00 0.00 3.91
4807 11096 7.155328 CCCGAGTCTTATATAATCAGTTGCTT 58.845 38.462 0.00 0.00 0.00 3.91
4808 11097 7.657761 CCCGAGTCTTATATAATCAGTTGCTTT 59.342 37.037 0.00 0.00 0.00 3.51
4809 11098 9.692749 CCGAGTCTTATATAATCAGTTGCTTTA 57.307 33.333 0.00 0.00 0.00 1.85
4830 11119 7.815398 TTTATATGTAAAGCGTGTTTCGAGA 57.185 32.000 0.00 0.00 42.86 4.04
4831 11120 7.815398 TTATATGTAAAGCGTGTTTCGAGAA 57.185 32.000 0.00 0.00 42.86 2.87
4872 11161 3.813529 AAGTTATGTCTGCTTCAACGC 57.186 42.857 0.00 0.00 0.00 4.84
4880 11169 1.063912 TCTGCTTCAACGCAACACAAG 59.936 47.619 0.00 0.00 39.80 3.16
4888 11177 4.847255 GCAACACAAGGCGCTAAG 57.153 55.556 7.64 0.00 0.00 2.18
4895 11184 3.458189 ACACAAGGCGCTAAGTATCATC 58.542 45.455 7.64 0.00 0.00 2.92
4912 11201 3.673902 TCATCGCTCAAAGTGAAATCCA 58.326 40.909 0.00 0.00 38.36 3.41
4926 11215 6.229561 GTGAAATCCACTGTAACTCAACTC 57.770 41.667 0.00 0.00 42.44 3.01
4936 11226 5.581085 ACTGTAACTCAACTCTTGAACACAC 59.419 40.000 0.00 0.00 39.58 3.82
5140 11430 3.897239 TCACTCACCAACACCATCTTTT 58.103 40.909 0.00 0.00 0.00 2.27
5142 11432 3.631686 CACTCACCAACACCATCTTTTGA 59.368 43.478 0.00 0.00 0.00 2.69
5151 11501 4.277476 ACACCATCTTTTGAGTGTCCAAA 58.723 39.130 0.00 0.00 35.91 3.28
5153 11503 3.319122 ACCATCTTTTGAGTGTCCAAAGC 59.681 43.478 0.00 0.00 37.34 3.51
5154 11504 3.318839 CCATCTTTTGAGTGTCCAAAGCA 59.681 43.478 0.00 0.00 37.34 3.91
5157 11507 4.743493 TCTTTTGAGTGTCCAAAGCAAAC 58.257 39.130 0.00 0.00 37.34 2.93
5172 11522 2.567615 AGCAAACTGGAATCGAGGTAGT 59.432 45.455 0.00 0.00 0.00 2.73
5194 11545 1.115930 CGATAGGCTAGGCACTGGGT 61.116 60.000 19.70 0.00 41.52 4.51
5200 11551 1.901085 CTAGGCACTGGGTCTGGAC 59.099 63.158 0.00 0.00 41.52 4.02
5205 11556 1.476007 GCACTGGGTCTGGACTCTGT 61.476 60.000 7.21 7.21 43.45 3.41
5239 11590 1.697432 CCAAAAACCCTCTTTTCCCCC 59.303 52.381 0.00 0.00 0.00 5.40
5260 11611 1.274358 TGTTCATCTCCATCCTCCCCA 60.274 52.381 0.00 0.00 0.00 4.96
5261 11612 1.419387 GTTCATCTCCATCCTCCCCAG 59.581 57.143 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.999406 TTTCTACGCGCTCATCTTGC 59.001 50.000 5.73 0.00 0.00 4.01
1 2 2.222819 GGTTTTCTACGCGCTCATCTTG 60.223 50.000 5.73 0.00 0.00 3.02
2 3 2.000447 GGTTTTCTACGCGCTCATCTT 59.000 47.619 5.73 0.00 0.00 2.40
4 5 1.060698 GTGGTTTTCTACGCGCTCATC 59.939 52.381 5.73 0.00 0.00 2.92
5 6 1.076332 GTGGTTTTCTACGCGCTCAT 58.924 50.000 5.73 0.00 0.00 2.90
6 7 0.249531 TGTGGTTTTCTACGCGCTCA 60.250 50.000 5.73 0.00 33.88 4.26
7 8 0.863144 TTGTGGTTTTCTACGCGCTC 59.137 50.000 5.73 0.00 33.88 5.03
8 9 0.865769 CTTGTGGTTTTCTACGCGCT 59.134 50.000 5.73 0.00 33.88 5.92
9 10 0.724785 GCTTGTGGTTTTCTACGCGC 60.725 55.000 5.73 0.00 33.88 6.86
10 11 0.584396 TGCTTGTGGTTTTCTACGCG 59.416 50.000 3.53 3.53 33.88 6.01
11 12 2.766970 TTGCTTGTGGTTTTCTACGC 57.233 45.000 0.00 0.00 33.88 4.42
12 13 3.033185 CGTTTGCTTGTGGTTTTCTACG 58.967 45.455 0.00 0.00 33.88 3.51
13 14 3.368495 CCGTTTGCTTGTGGTTTTCTAC 58.632 45.455 0.00 0.00 0.00 2.59
14 15 2.223618 GCCGTTTGCTTGTGGTTTTCTA 60.224 45.455 0.00 0.00 36.87 2.10
15 16 1.470805 GCCGTTTGCTTGTGGTTTTCT 60.471 47.619 0.00 0.00 36.87 2.52
16 17 0.927537 GCCGTTTGCTTGTGGTTTTC 59.072 50.000 0.00 0.00 36.87 2.29
17 18 3.058115 GCCGTTTGCTTGTGGTTTT 57.942 47.368 0.00 0.00 36.87 2.43
18 19 4.825377 GCCGTTTGCTTGTGGTTT 57.175 50.000 0.00 0.00 36.87 3.27
128 132 7.615365 AGAGATGTTAAAATTATGCTTCCCACA 59.385 33.333 0.00 0.00 0.00 4.17
129 133 8.000780 AGAGATGTTAAAATTATGCTTCCCAC 57.999 34.615 0.00 0.00 0.00 4.61
130 134 8.593945 AAGAGATGTTAAAATTATGCTTCCCA 57.406 30.769 0.00 0.00 0.00 4.37
131 135 9.875691 AAAAGAGATGTTAAAATTATGCTTCCC 57.124 29.630 0.00 0.00 0.00 3.97
166 170 2.289694 CCCAGTGGAGAAACGAGATGTT 60.290 50.000 11.95 0.00 44.59 2.71
170 174 1.118965 TGCCCAGTGGAGAAACGAGA 61.119 55.000 11.95 0.00 0.00 4.04
171 175 0.250295 TTGCCCAGTGGAGAAACGAG 60.250 55.000 11.95 0.00 0.00 4.18
172 176 0.250295 CTTGCCCAGTGGAGAAACGA 60.250 55.000 11.95 0.00 0.00 3.85
173 177 0.250295 TCTTGCCCAGTGGAGAAACG 60.250 55.000 11.95 0.00 0.00 3.60
174 178 1.981256 TTCTTGCCCAGTGGAGAAAC 58.019 50.000 11.95 0.00 0.00 2.78
175 179 2.978156 ATTCTTGCCCAGTGGAGAAA 57.022 45.000 11.95 0.46 30.65 2.52
176 180 2.892852 CAAATTCTTGCCCAGTGGAGAA 59.107 45.455 11.95 12.45 31.22 2.87
177 181 2.517959 CAAATTCTTGCCCAGTGGAGA 58.482 47.619 11.95 2.33 0.00 3.71
178 182 1.547372 CCAAATTCTTGCCCAGTGGAG 59.453 52.381 11.95 0.00 0.00 3.86
179 183 1.146774 TCCAAATTCTTGCCCAGTGGA 59.853 47.619 11.95 0.00 0.00 4.02
180 184 1.631405 TCCAAATTCTTGCCCAGTGG 58.369 50.000 0.63 0.63 0.00 4.00
181 185 2.159338 CGATCCAAATTCTTGCCCAGTG 60.159 50.000 0.00 0.00 0.00 3.66
182 186 2.094675 CGATCCAAATTCTTGCCCAGT 58.905 47.619 0.00 0.00 0.00 4.00
183 187 2.098117 GTCGATCCAAATTCTTGCCCAG 59.902 50.000 0.00 0.00 0.00 4.45
184 188 2.091541 GTCGATCCAAATTCTTGCCCA 58.908 47.619 0.00 0.00 0.00 5.36
185 189 1.405463 GGTCGATCCAAATTCTTGCCC 59.595 52.381 0.00 0.00 35.97 5.36
186 190 2.098117 CAGGTCGATCCAAATTCTTGCC 59.902 50.000 0.00 0.00 39.02 4.52
187 191 3.009723 TCAGGTCGATCCAAATTCTTGC 58.990 45.455 0.00 0.00 39.02 4.01
197 201 4.230657 CGATGAGTATTTCAGGTCGATCC 58.769 47.826 0.00 0.00 39.52 3.36
199 203 3.889538 TCCGATGAGTATTTCAGGTCGAT 59.110 43.478 0.00 0.00 39.52 3.59
206 210 4.545208 TGTTGGTCCGATGAGTATTTCA 57.455 40.909 0.00 0.00 40.85 2.69
214 218 2.567169 AGTGATCTTGTTGGTCCGATGA 59.433 45.455 0.00 0.00 0.00 2.92
215 219 2.674852 CAGTGATCTTGTTGGTCCGATG 59.325 50.000 0.00 0.00 0.00 3.84
218 222 2.069273 GTCAGTGATCTTGTTGGTCCG 58.931 52.381 0.00 0.00 0.00 4.79
221 225 6.365970 AGAATAGTCAGTGATCTTGTTGGT 57.634 37.500 0.00 0.00 0.00 3.67
231 235 8.523658 CCGATCCATATAAAGAATAGTCAGTGA 58.476 37.037 0.00 0.00 0.00 3.41
234 238 6.758886 GGCCGATCCATATAAAGAATAGTCAG 59.241 42.308 0.00 0.00 34.01 3.51
239 243 4.468510 ACGGGCCGATCCATATAAAGAATA 59.531 41.667 35.78 0.00 36.21 1.75
333 337 2.668550 GCACCGTTGGGTCAGGAC 60.669 66.667 0.00 0.00 46.01 3.85
385 3709 0.938008 TACAATTGCACACGCGTCAA 59.062 45.000 9.86 12.06 42.97 3.18
386 3710 0.510790 CTACAATTGCACACGCGTCA 59.489 50.000 9.86 0.55 42.97 4.35
402 3726 2.937149 GCAGGGATCCGAAGAAAACTAC 59.063 50.000 5.45 0.00 0.00 2.73
492 5870 1.138069 GCTCTGCTCTCCTAACCTTCC 59.862 57.143 0.00 0.00 0.00 3.46
558 5939 2.689034 GTGGGAGTGGAGGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
578 5959 1.144057 GGTCGTAGCAGGGGTGATG 59.856 63.158 0.00 0.00 0.00 3.07
663 6044 3.486252 GAGAGGAATCGCGTCGGGG 62.486 68.421 5.77 0.00 36.53 5.73
703 6084 1.835494 ACAGTACTCCGAGCAAGCTA 58.165 50.000 0.00 0.00 0.00 3.32
704 6085 0.969894 AACAGTACTCCGAGCAAGCT 59.030 50.000 0.00 0.00 0.00 3.74
729 6112 1.795170 GCAACGAAAAGGCAGGAGCA 61.795 55.000 0.00 0.00 44.61 4.26
810 6193 7.457060 GGAATCTCAGAAACACTAATTCGTTC 58.543 38.462 0.00 0.00 32.04 3.95
823 6206 4.512944 GCTATTGATGCGGAATCTCAGAAA 59.487 41.667 0.00 0.00 36.15 2.52
827 6210 2.550855 GGGCTATTGATGCGGAATCTCA 60.551 50.000 0.00 0.00 36.15 3.27
884 6272 2.987125 CCGAACGGGGATCCAGTT 59.013 61.111 20.49 20.49 34.32 3.16
896 6284 2.014857 GCAGAAGGATTAACCCCGAAC 58.985 52.381 0.00 0.00 40.05 3.95
924 6312 3.165058 TGTATGAGACAGATTCACGGC 57.835 47.619 0.00 0.00 32.86 5.68
954 6342 2.072298 CGGGCACTGAAGAAGAAGAAG 58.928 52.381 0.00 0.00 36.31 2.85
977 6365 3.132289 CGTAGAAATCCCCTGCTACAGAA 59.868 47.826 0.00 0.00 34.38 3.02
992 6380 7.033791 CCTACTAGCAAAAGACATCGTAGAAA 58.966 38.462 0.00 0.00 43.58 2.52
995 6383 6.132791 TCCTACTAGCAAAAGACATCGTAG 57.867 41.667 0.00 0.00 0.00 3.51
997 6385 5.352284 CATCCTACTAGCAAAAGACATCGT 58.648 41.667 0.00 0.00 0.00 3.73
1003 6391 3.731431 TCCCCATCCTACTAGCAAAAGA 58.269 45.455 0.00 0.00 0.00 2.52
1199 6587 6.770542 AGTCCTAAAAGGAGGTAAAACAGAG 58.229 40.000 0.00 0.00 46.90 3.35
1217 6605 6.153510 GTCATCTGTGGCATATGATAGTCCTA 59.846 42.308 6.97 0.00 31.53 2.94
1275 6663 3.277142 AAACAACCTTCAAGGACGTCT 57.723 42.857 11.59 0.00 37.67 4.18
1308 6696 7.487509 TGGCAAAAATATACATCAAATGTGTCG 59.512 33.333 2.88 0.00 44.60 4.35
1335 6724 9.535878 AAAAGAAAGAAAGTGTTAACAACAACA 57.464 25.926 10.51 0.00 44.16 3.33
1336 6725 9.791838 CAAAAGAAAGAAAGTGTTAACAACAAC 57.208 29.630 10.51 3.18 44.16 3.32
1337 6726 8.983724 CCAAAAGAAAGAAAGTGTTAACAACAA 58.016 29.630 10.51 0.00 44.16 2.83
1416 6805 9.722056 GTAGATGCATAAGTAACAAATCCAAAG 57.278 33.333 0.00 0.00 0.00 2.77
1481 6870 7.182930 ACATAGGGGATATCTCTAAAATCACCC 59.817 40.741 1.82 0.54 43.12 4.61
1516 6905 6.063496 AGGCATGAATGTCATAGCATATCT 57.937 37.500 0.00 1.32 34.28 1.98
1547 6938 2.040278 AGTGGTGCAGAGGATAAAAGCA 59.960 45.455 0.00 0.00 0.00 3.91
1577 6968 2.418976 GCAACCTGAAATTCGGGACTAC 59.581 50.000 26.32 9.48 45.95 2.73
1607 6998 2.289694 GGACAAGCTACTCCTGAAGCAA 60.290 50.000 2.81 0.00 41.32 3.91
1608 6999 1.276421 GGACAAGCTACTCCTGAAGCA 59.724 52.381 2.81 0.00 41.32 3.91
1752 7155 4.095334 TCAATGCAAATTCAGACATCTCCG 59.905 41.667 0.00 0.00 0.00 4.63
1784 7187 4.650734 TGATGAGTGGCACAGTTTAATGA 58.349 39.130 21.41 0.00 45.14 2.57
1799 7202 7.884877 TCCTTGACAGAACATAAATTGATGAGT 59.115 33.333 9.95 2.79 0.00 3.41
1819 7222 4.174704 AGATGCTTGCCATTATCCTTGA 57.825 40.909 0.00 0.00 33.29 3.02
1851 7254 2.159282 AGGTATGTCGTGAACTAAGGCG 60.159 50.000 0.00 0.00 0.00 5.52
2309 7719 8.621532 AAAGATAAACATAACAGTCAGCTTGA 57.378 30.769 0.00 0.00 0.00 3.02
2395 7805 2.125673 GCACGGTCACTGGCGTAT 60.126 61.111 0.00 0.00 0.00 3.06
2519 7929 1.184431 TATCCGCCACTTCCGTAACA 58.816 50.000 0.00 0.00 0.00 2.41
2568 7981 0.112995 ACCATTGCCCGCATATCCAT 59.887 50.000 0.00 0.00 0.00 3.41
2613 8026 0.255890 ACCATATCCACCACCACTGC 59.744 55.000 0.00 0.00 0.00 4.40
2723 8136 4.275936 GGCATTATTGTAGCTTCCGTCAAT 59.724 41.667 0.00 0.00 35.24 2.57
2724 8137 3.625764 GGCATTATTGTAGCTTCCGTCAA 59.374 43.478 0.00 0.00 0.00 3.18
2784 8197 5.820131 TGGCATTATTGTAGATTTCGCAAG 58.180 37.500 0.00 0.00 0.00 4.01
2786 8199 4.261155 GCTGGCATTATTGTAGATTTCGCA 60.261 41.667 0.00 0.00 0.00 5.10
3243 8656 2.743718 CAGCACTTCCACCCGAGT 59.256 61.111 0.00 0.00 0.00 4.18
3244 8657 2.046892 CCAGCACTTCCACCCGAG 60.047 66.667 0.00 0.00 0.00 4.63
3245 8658 2.847234 ACCAGCACTTCCACCCGA 60.847 61.111 0.00 0.00 0.00 5.14
3246 8659 2.669569 CACCAGCACTTCCACCCG 60.670 66.667 0.00 0.00 0.00 5.28
3247 8660 2.282462 CCACCAGCACTTCCACCC 60.282 66.667 0.00 0.00 0.00 4.61
3248 8661 2.985847 GCCACCAGCACTTCCACC 60.986 66.667 0.00 0.00 42.97 4.61
3273 8686 4.752879 TGTAGCTTCCGCCACCGC 62.753 66.667 0.00 0.00 36.60 5.68
3274 8687 0.179094 TATTGTAGCTTCCGCCACCG 60.179 55.000 0.00 0.00 36.60 4.94
3275 8688 2.032680 TTATTGTAGCTTCCGCCACC 57.967 50.000 0.00 0.00 36.60 4.61
3276 8689 2.287009 GCATTATTGTAGCTTCCGCCAC 60.287 50.000 0.00 0.00 36.60 5.01
3277 8690 1.946768 GCATTATTGTAGCTTCCGCCA 59.053 47.619 0.00 0.00 36.60 5.69
3278 8691 1.266989 GGCATTATTGTAGCTTCCGCC 59.733 52.381 0.00 0.00 36.60 6.13
3279 8692 1.946768 TGGCATTATTGTAGCTTCCGC 59.053 47.619 0.00 0.00 0.00 5.54
3280 8693 2.031682 GCTGGCATTATTGTAGCTTCCG 60.032 50.000 0.00 0.00 34.44 4.30
3281 8694 2.951642 TGCTGGCATTATTGTAGCTTCC 59.048 45.455 0.00 0.00 36.65 3.46
3282 8695 4.096984 AGTTGCTGGCATTATTGTAGCTTC 59.903 41.667 0.00 0.00 36.65 3.86
3283 8696 4.019174 AGTTGCTGGCATTATTGTAGCTT 58.981 39.130 0.00 0.00 36.65 3.74
3284 8697 3.624777 AGTTGCTGGCATTATTGTAGCT 58.375 40.909 13.36 0.00 36.65 3.32
3285 8698 3.546815 CGAGTTGCTGGCATTATTGTAGC 60.547 47.826 0.00 8.25 36.41 3.58
3286 8699 3.002656 CCGAGTTGCTGGCATTATTGTAG 59.997 47.826 0.00 0.00 0.00 2.74
3287 8700 2.942376 CCGAGTTGCTGGCATTATTGTA 59.058 45.455 0.00 0.00 0.00 2.41
3288 8701 1.745087 CCGAGTTGCTGGCATTATTGT 59.255 47.619 0.00 0.00 0.00 2.71
3289 8702 1.066002 CCCGAGTTGCTGGCATTATTG 59.934 52.381 0.00 0.00 0.00 1.90
3290 8703 1.340991 ACCCGAGTTGCTGGCATTATT 60.341 47.619 0.00 0.00 0.00 1.40
3291 8704 0.255890 ACCCGAGTTGCTGGCATTAT 59.744 50.000 0.00 0.00 0.00 1.28
3292 8705 0.676466 CACCCGAGTTGCTGGCATTA 60.676 55.000 0.00 0.00 0.00 1.90
3293 8706 1.973281 CACCCGAGTTGCTGGCATT 60.973 57.895 0.00 0.00 0.00 3.56
3294 8707 2.360350 CACCCGAGTTGCTGGCAT 60.360 61.111 0.00 0.00 0.00 4.40
3295 8708 4.641645 CCACCCGAGTTGCTGGCA 62.642 66.667 0.00 0.00 0.00 4.92
3296 8709 3.842925 TTCCACCCGAGTTGCTGGC 62.843 63.158 0.00 0.00 0.00 4.85
3297 8710 1.672356 CTTCCACCCGAGTTGCTGG 60.672 63.158 0.00 0.00 0.00 4.85
3298 8711 1.071471 ACTTCCACCCGAGTTGCTG 59.929 57.895 0.00 0.00 0.00 4.41
3333 8746 4.752879 TGTAGCTTCCGCCACCGC 62.753 66.667 0.00 0.00 36.60 5.68
3334 8747 0.179094 TATTGTAGCTTCCGCCACCG 60.179 55.000 0.00 0.00 36.60 4.94
3335 8748 2.032680 TTATTGTAGCTTCCGCCACC 57.967 50.000 0.00 0.00 36.60 4.61
3336 8749 2.287009 GCATTATTGTAGCTTCCGCCAC 60.287 50.000 0.00 0.00 36.60 5.01
3337 8750 1.946768 GCATTATTGTAGCTTCCGCCA 59.053 47.619 0.00 0.00 36.60 5.69
3338 8751 1.266989 GGCATTATTGTAGCTTCCGCC 59.733 52.381 0.00 0.00 36.60 6.13
3339 8752 1.946768 TGGCATTATTGTAGCTTCCGC 59.053 47.619 0.00 0.00 0.00 5.54
3340 8753 2.031682 GCTGGCATTATTGTAGCTTCCG 60.032 50.000 0.00 0.00 34.44 4.30
3341 8754 2.951642 TGCTGGCATTATTGTAGCTTCC 59.048 45.455 0.00 0.00 36.65 3.46
3342 8755 4.637483 TTGCTGGCATTATTGTAGCTTC 57.363 40.909 0.00 0.00 36.65 3.86
3343 8756 5.594926 GAATTGCTGGCATTATTGTAGCTT 58.405 37.500 0.00 4.89 36.65 3.74
3344 8757 4.261322 CGAATTGCTGGCATTATTGTAGCT 60.261 41.667 13.36 0.00 36.65 3.32
3345 8758 3.976942 CGAATTGCTGGCATTATTGTAGC 59.023 43.478 0.00 8.25 36.41 3.58
3346 8759 4.539870 CCGAATTGCTGGCATTATTGTAG 58.460 43.478 0.00 0.00 0.00 2.74
3347 8760 3.317711 CCCGAATTGCTGGCATTATTGTA 59.682 43.478 0.00 0.00 0.00 2.41
3348 8761 2.101249 CCCGAATTGCTGGCATTATTGT 59.899 45.455 0.00 0.00 0.00 2.71
3349 8762 2.101249 ACCCGAATTGCTGGCATTATTG 59.899 45.455 0.00 0.00 0.00 1.90
3350 8763 2.101249 CACCCGAATTGCTGGCATTATT 59.899 45.455 0.00 0.00 0.00 1.40
3351 8764 1.682854 CACCCGAATTGCTGGCATTAT 59.317 47.619 0.00 0.00 0.00 1.28
3352 8765 1.102154 CACCCGAATTGCTGGCATTA 58.898 50.000 0.00 0.00 0.00 1.90
3353 8766 1.606885 CCACCCGAATTGCTGGCATT 61.607 55.000 0.00 0.00 0.00 3.56
3354 8767 2.053865 CCACCCGAATTGCTGGCAT 61.054 57.895 0.00 0.00 0.00 4.40
3355 8768 2.676121 CCACCCGAATTGCTGGCA 60.676 61.111 0.00 0.00 0.00 4.92
3356 8769 2.361104 TCCACCCGAATTGCTGGC 60.361 61.111 0.00 0.00 0.00 4.85
3357 8770 1.750399 CCTCCACCCGAATTGCTGG 60.750 63.158 0.00 0.00 0.00 4.85
3358 8771 1.002134 ACCTCCACCCGAATTGCTG 60.002 57.895 0.00 0.00 0.00 4.41
3359 8772 1.002134 CACCTCCACCCGAATTGCT 60.002 57.895 0.00 0.00 0.00 3.91
3360 8773 2.700773 GCACCTCCACCCGAATTGC 61.701 63.158 0.00 0.00 0.00 3.56
3361 8774 1.002134 AGCACCTCCACCCGAATTG 60.002 57.895 0.00 0.00 0.00 2.32
3362 8775 1.002134 CAGCACCTCCACCCGAATT 60.002 57.895 0.00 0.00 0.00 2.17
3363 8776 2.671070 CAGCACCTCCACCCGAAT 59.329 61.111 0.00 0.00 0.00 3.34
3364 8777 3.636231 CCAGCACCTCCACCCGAA 61.636 66.667 0.00 0.00 0.00 4.30
3365 8778 3.533079 TACCAGCACCTCCACCCGA 62.533 63.158 0.00 0.00 0.00 5.14
3366 8779 3.000819 TACCAGCACCTCCACCCG 61.001 66.667 0.00 0.00 0.00 5.28
3367 8780 2.990479 CTACCAGCACCTCCACCC 59.010 66.667 0.00 0.00 0.00 4.61
3368 8781 0.976073 TAGCTACCAGCACCTCCACC 60.976 60.000 0.38 0.00 45.56 4.61
3369 8782 0.175989 GTAGCTACCAGCACCTCCAC 59.824 60.000 13.20 0.00 45.56 4.02
3370 8783 1.320344 CGTAGCTACCAGCACCTCCA 61.320 60.000 18.16 0.00 45.56 3.86
3371 8784 1.437986 CGTAGCTACCAGCACCTCC 59.562 63.158 18.16 0.00 45.56 4.30
3372 8785 1.437986 CCGTAGCTACCAGCACCTC 59.562 63.158 18.16 0.00 45.56 3.85
3373 8786 2.722201 GCCGTAGCTACCAGCACCT 61.722 63.158 22.41 0.00 45.56 4.00
3374 8787 2.202892 GCCGTAGCTACCAGCACC 60.203 66.667 22.41 2.60 45.56 5.01
3375 8788 2.582498 CGCCGTAGCTACCAGCAC 60.582 66.667 25.15 9.32 45.56 4.40
3376 8789 3.833645 CCGCCGTAGCTACCAGCA 61.834 66.667 25.15 0.00 45.56 4.41
3378 8791 4.925576 CGCCGCCGTAGCTACCAG 62.926 72.222 18.16 10.88 36.60 4.00
3403 8816 2.108157 TAGTTGCCCGCGCCATAG 59.892 61.111 0.00 0.00 0.00 2.23
3404 8817 2.202960 GTAGTTGCCCGCGCCATA 60.203 61.111 0.00 0.00 0.00 2.74
3405 8818 3.910914 TTGTAGTTGCCCGCGCCAT 62.911 57.895 0.00 0.00 0.00 4.40
3406 8819 4.627801 TTGTAGTTGCCCGCGCCA 62.628 61.111 0.00 0.00 0.00 5.69
3407 8820 4.097863 GTTGTAGTTGCCCGCGCC 62.098 66.667 0.00 0.00 0.00 6.53
3408 8821 3.308878 CTGTTGTAGTTGCCCGCGC 62.309 63.158 0.00 0.00 0.00 6.86
3409 8822 2.860293 CTGTTGTAGTTGCCCGCG 59.140 61.111 0.00 0.00 0.00 6.46
3410 8823 2.561373 GCTGTTGTAGTTGCCCGC 59.439 61.111 0.00 0.00 0.00 6.13
3411 8824 2.677003 CCGCTGTTGTAGTTGCCCG 61.677 63.158 0.00 0.00 0.00 6.13
3412 8825 1.298859 CTCCGCTGTTGTAGTTGCCC 61.299 60.000 0.00 0.00 0.00 5.36
3413 8826 1.912371 GCTCCGCTGTTGTAGTTGCC 61.912 60.000 0.00 0.00 0.00 4.52
3414 8827 0.951040 AGCTCCGCTGTTGTAGTTGC 60.951 55.000 0.00 0.00 37.57 4.17
3415 8828 3.217242 AGCTCCGCTGTTGTAGTTG 57.783 52.632 0.00 0.00 37.57 3.16
3429 8842 4.189188 CTGCATTGCCGCCAGCTC 62.189 66.667 6.12 0.00 44.23 4.09
3431 8844 4.487412 GACTGCATTGCCGCCAGC 62.487 66.667 6.12 0.00 44.14 4.85
3432 8845 2.262471 GAAGACTGCATTGCCGCCAG 62.262 60.000 6.12 0.00 0.00 4.85
3433 8846 2.282391 AAGACTGCATTGCCGCCA 60.282 55.556 6.12 0.00 0.00 5.69
3434 8847 2.486966 GAAGACTGCATTGCCGCC 59.513 61.111 6.12 0.00 0.00 6.13
3435 8848 2.099062 CGAAGACTGCATTGCCGC 59.901 61.111 6.12 0.00 0.00 6.53
3436 8849 2.787249 CCGAAGACTGCATTGCCG 59.213 61.111 6.12 1.84 0.00 5.69
3437 8850 2.486966 GCCGAAGACTGCATTGCC 59.513 61.111 6.12 0.00 0.00 4.52
3438 8851 1.911293 TTCGCCGAAGACTGCATTGC 61.911 55.000 0.46 0.46 0.00 3.56
3439 8852 0.516877 TTTCGCCGAAGACTGCATTG 59.483 50.000 0.00 0.00 0.00 2.82
3440 8853 1.197721 CTTTTCGCCGAAGACTGCATT 59.802 47.619 0.00 0.00 0.00 3.56
3441 8854 0.798776 CTTTTCGCCGAAGACTGCAT 59.201 50.000 0.00 0.00 0.00 3.96
3442 8855 0.249699 TCTTTTCGCCGAAGACTGCA 60.250 50.000 0.00 0.00 0.00 4.41
3443 8856 0.164002 GTCTTTTCGCCGAAGACTGC 59.836 55.000 10.84 0.00 45.94 4.40
3451 8864 3.788766 CTGCCGGTCTTTTCGCCG 61.789 66.667 1.90 0.00 46.80 6.46
3452 8865 1.792118 AAACTGCCGGTCTTTTCGCC 61.792 55.000 1.90 0.00 0.00 5.54
3453 8866 0.385598 GAAACTGCCGGTCTTTTCGC 60.386 55.000 1.90 0.00 0.00 4.70
3454 8867 0.941542 TGAAACTGCCGGTCTTTTCG 59.058 50.000 1.90 0.00 31.76 3.46
3455 8868 1.947456 ACTGAAACTGCCGGTCTTTTC 59.053 47.619 1.90 9.85 0.00 2.29
3456 8869 2.052782 ACTGAAACTGCCGGTCTTTT 57.947 45.000 1.90 0.00 0.00 2.27
3457 8870 2.104281 ACTACTGAAACTGCCGGTCTTT 59.896 45.455 1.90 0.00 0.00 2.52
3458 8871 1.692519 ACTACTGAAACTGCCGGTCTT 59.307 47.619 1.90 0.00 0.00 3.01
3459 8872 1.000955 CACTACTGAAACTGCCGGTCT 59.999 52.381 1.90 0.00 0.00 3.85
3460 8873 1.429463 CACTACTGAAACTGCCGGTC 58.571 55.000 1.90 0.00 0.00 4.79
3461 8874 0.034896 CCACTACTGAAACTGCCGGT 59.965 55.000 1.90 0.00 0.00 5.28
3462 8875 0.673644 CCCACTACTGAAACTGCCGG 60.674 60.000 0.00 0.00 0.00 6.13
3463 8876 0.034896 ACCCACTACTGAAACTGCCG 59.965 55.000 0.00 0.00 0.00 5.69
3464 8877 3.629142 ATACCCACTACTGAAACTGCC 57.371 47.619 0.00 0.00 0.00 4.85
3465 8878 4.631813 CAGAATACCCACTACTGAAACTGC 59.368 45.833 0.00 0.00 0.00 4.40
3466 8879 4.631813 GCAGAATACCCACTACTGAAACTG 59.368 45.833 0.00 0.00 0.00 3.16
3467 8880 4.532521 AGCAGAATACCCACTACTGAAACT 59.467 41.667 0.00 0.00 0.00 2.66
3468 8881 4.631813 CAGCAGAATACCCACTACTGAAAC 59.368 45.833 0.00 0.00 31.43 2.78
3469 8882 4.286032 ACAGCAGAATACCCACTACTGAAA 59.714 41.667 0.00 0.00 33.35 2.69
3470 8883 3.838317 ACAGCAGAATACCCACTACTGAA 59.162 43.478 0.00 0.00 33.35 3.02
3471 8884 3.441101 ACAGCAGAATACCCACTACTGA 58.559 45.455 0.00 0.00 33.35 3.41
3472 8885 3.895232 ACAGCAGAATACCCACTACTG 57.105 47.619 0.00 0.00 34.72 2.74
3473 8886 3.619979 GCAACAGCAGAATACCCACTACT 60.620 47.826 0.00 0.00 0.00 2.57
3474 8887 2.678336 GCAACAGCAGAATACCCACTAC 59.322 50.000 0.00 0.00 0.00 2.73
3475 8888 2.571653 AGCAACAGCAGAATACCCACTA 59.428 45.455 0.00 0.00 0.00 2.74
3476 8889 1.352352 AGCAACAGCAGAATACCCACT 59.648 47.619 0.00 0.00 0.00 4.00
3477 8890 1.470098 CAGCAACAGCAGAATACCCAC 59.530 52.381 0.00 0.00 0.00 4.61
3478 8891 1.614051 CCAGCAACAGCAGAATACCCA 60.614 52.381 0.00 0.00 0.00 4.51
3479 8892 1.098050 CCAGCAACAGCAGAATACCC 58.902 55.000 0.00 0.00 0.00 3.69
3480 8893 1.470098 CACCAGCAACAGCAGAATACC 59.530 52.381 0.00 0.00 0.00 2.73
3481 8894 1.470098 CCACCAGCAACAGCAGAATAC 59.530 52.381 0.00 0.00 0.00 1.89
3482 8895 1.825090 CCACCAGCAACAGCAGAATA 58.175 50.000 0.00 0.00 0.00 1.75
3483 8896 1.530013 GCCACCAGCAACAGCAGAAT 61.530 55.000 0.00 0.00 42.97 2.40
3484 8897 2.195567 GCCACCAGCAACAGCAGAA 61.196 57.895 0.00 0.00 42.97 3.02
3485 8898 2.595463 GCCACCAGCAACAGCAGA 60.595 61.111 0.00 0.00 42.97 4.26
3494 8907 4.645921 GCCGTTGTTGCCACCAGC 62.646 66.667 0.00 0.00 44.14 4.85
3495 8908 3.198236 CTGCCGTTGTTGCCACCAG 62.198 63.158 0.00 0.00 0.00 4.00
3496 8909 3.215568 CTGCCGTTGTTGCCACCA 61.216 61.111 0.00 0.00 0.00 4.17
3497 8910 4.645921 GCTGCCGTTGTTGCCACC 62.646 66.667 0.00 0.00 0.00 4.61
3498 8911 4.980903 CGCTGCCGTTGTTGCCAC 62.981 66.667 0.00 0.00 0.00 5.01
3502 8915 4.688419 CCAGCGCTGCCGTTGTTG 62.688 66.667 31.96 11.77 43.06 3.33
3511 8924 1.526575 AATTGTTCCCACCAGCGCTG 61.527 55.000 30.52 30.52 0.00 5.18
3512 8925 0.827507 AAATTGTTCCCACCAGCGCT 60.828 50.000 2.64 2.64 0.00 5.92
3513 8926 0.388520 GAAATTGTTCCCACCAGCGC 60.389 55.000 0.00 0.00 0.00 5.92
3514 8927 0.243636 GGAAATTGTTCCCACCAGCG 59.756 55.000 0.00 0.00 46.84 5.18
3523 8936 5.046663 ACCATACATGTTGGGGAAATTGTTC 60.047 40.000 22.74 0.00 38.64 3.18
3524 8937 4.843516 ACCATACATGTTGGGGAAATTGTT 59.156 37.500 22.74 4.55 38.64 2.83
3525 8938 4.222588 CACCATACATGTTGGGGAAATTGT 59.777 41.667 22.74 3.59 40.29 2.71
3526 8939 4.757594 CACCATACATGTTGGGGAAATTG 58.242 43.478 22.74 12.16 40.29 2.32
3527 8940 3.197549 GCACCATACATGTTGGGGAAATT 59.802 43.478 24.71 6.63 40.29 1.82
3528 8941 2.765699 GCACCATACATGTTGGGGAAAT 59.234 45.455 24.71 1.94 40.29 2.17
3529 8942 2.175202 GCACCATACATGTTGGGGAAA 58.825 47.619 24.71 0.00 40.29 3.13
3530 8943 1.618345 GGCACCATACATGTTGGGGAA 60.618 52.381 24.71 0.27 40.29 3.97
3531 8944 0.033601 GGCACCATACATGTTGGGGA 60.034 55.000 24.71 0.97 40.29 4.81
3532 8945 1.383456 CGGCACCATACATGTTGGGG 61.383 60.000 22.74 21.06 40.84 4.96
3533 8946 1.383456 CCGGCACCATACATGTTGGG 61.383 60.000 22.74 18.23 38.64 4.12
3534 8947 2.003658 GCCGGCACCATACATGTTGG 62.004 60.000 24.80 19.38 40.26 3.77
3535 8948 1.311651 TGCCGGCACCATACATGTTG 61.312 55.000 29.03 2.25 0.00 3.33
3536 8949 0.610509 TTGCCGGCACCATACATGTT 60.611 50.000 32.95 0.00 0.00 2.71
3537 8950 1.001517 TTGCCGGCACCATACATGT 60.002 52.632 32.95 2.69 0.00 3.21
3538 8951 1.031571 AGTTGCCGGCACCATACATG 61.032 55.000 32.95 0.00 0.00 3.21
3539 8952 0.544223 TAGTTGCCGGCACCATACAT 59.456 50.000 32.95 16.03 0.00 2.29
3540 8953 0.391927 GTAGTTGCCGGCACCATACA 60.392 55.000 32.95 11.21 0.00 2.29
3541 8954 0.391927 TGTAGTTGCCGGCACCATAC 60.392 55.000 32.95 28.82 0.00 2.39
3542 8955 0.325272 TTGTAGTTGCCGGCACCATA 59.675 50.000 32.95 19.29 0.00 2.74
3543 8956 1.074072 TTGTAGTTGCCGGCACCAT 59.926 52.632 32.95 20.44 0.00 3.55
3544 8957 1.894756 GTTGTAGTTGCCGGCACCA 60.895 57.895 32.95 20.39 0.00 4.17
3545 8958 1.852067 CTGTTGTAGTTGCCGGCACC 61.852 60.000 32.95 25.11 0.00 5.01
3546 8959 1.574428 CTGTTGTAGTTGCCGGCAC 59.426 57.895 32.95 23.86 0.00 5.01
3547 8960 2.258013 GCTGTTGTAGTTGCCGGCA 61.258 57.895 29.03 29.03 0.00 5.69
3548 8961 2.561373 GCTGTTGTAGTTGCCGGC 59.439 61.111 22.73 22.73 0.00 6.13
3549 8962 2.677003 CCGCTGTTGTAGTTGCCGG 61.677 63.158 0.00 0.00 0.00 6.13
3550 8963 1.626654 CTCCGCTGTTGTAGTTGCCG 61.627 60.000 0.00 0.00 0.00 5.69
3551 8964 1.912371 GCTCCGCTGTTGTAGTTGCC 61.912 60.000 0.00 0.00 0.00 4.52
3552 8965 0.951040 AGCTCCGCTGTTGTAGTTGC 60.951 55.000 0.00 0.00 37.57 4.17
3553 8966 3.217242 AGCTCCGCTGTTGTAGTTG 57.783 52.632 0.00 0.00 37.57 3.16
3567 8980 4.189188 CTGCATTGCCGCCAGCTC 62.189 66.667 6.12 0.00 44.23 4.09
3569 8982 4.487412 GACTGCATTGCCGCCAGC 62.487 66.667 6.12 0.00 44.14 4.85
3570 8983 3.818787 GGACTGCATTGCCGCCAG 61.819 66.667 6.12 0.00 0.00 4.85
3571 8984 4.349503 AGGACTGCATTGCCGCCA 62.350 61.111 6.12 0.00 0.00 5.69
3572 8985 3.512516 GAGGACTGCATTGCCGCC 61.513 66.667 6.12 4.88 0.00 6.13
3573 8986 3.869272 CGAGGACTGCATTGCCGC 61.869 66.667 6.12 0.00 0.00 6.53
3574 8987 3.197790 CCGAGGACTGCATTGCCG 61.198 66.667 6.12 1.84 0.00 5.69
3601 9773 1.529010 CCCACTGCTGAAACTGCCA 60.529 57.895 0.00 0.00 0.00 4.92
3623 9795 2.595463 GCCACCAGCAACAGCAGA 60.595 61.111 0.00 0.00 42.97 4.26
3713 9885 2.393768 CGCCGAAGACTGCATTGCT 61.394 57.895 10.49 0.00 0.00 3.91
3741 9913 3.073650 AGAATTCCCTCTGCTGAAACTGT 59.926 43.478 0.65 0.00 0.00 3.55
3754 9926 2.242043 CCAGCAACAACAGAATTCCCT 58.758 47.619 0.65 0.00 0.00 4.20
3796 9968 1.064017 GGGGAATTGTATCCACCAGCA 60.064 52.381 0.00 0.00 41.55 4.41
3805 9977 3.837731 CAAAGGTGTTGGGGGAATTGTAT 59.162 43.478 0.00 0.00 0.00 2.29
3887 10059 1.589716 GAATGCCCGCTGCTGAAACT 61.590 55.000 0.00 0.00 42.00 2.66
4005 10177 1.518903 GCTTCCACCCAAGACTGCAC 61.519 60.000 0.00 0.00 0.00 4.57
4287 10465 7.492020 GCATTCATTATTGTTACCTTTGCATCA 59.508 33.333 0.00 0.00 0.00 3.07
4397 10577 4.143052 GCATGCAAAACCAAAGCAGAATAC 60.143 41.667 14.21 0.00 42.14 1.89
4469 10650 8.027189 TCCATCTCGATATACACGATAAAAAGG 58.973 37.037 0.00 0.00 39.02 3.11
4470 10651 8.965986 TCCATCTCGATATACACGATAAAAAG 57.034 34.615 0.00 0.00 39.02 2.27
4530 10804 2.158842 GCAGTAGGATGAACAGGCTGAT 60.159 50.000 23.66 9.90 0.00 2.90
4596 10870 3.814842 CACTGTCAACTGTAAAGATGGCA 59.185 43.478 0.00 0.00 0.00 4.92
4601 10875 6.459670 TGACTACACTGTCAACTGTAAAGA 57.540 37.500 0.00 0.00 43.08 2.52
4644 10932 0.535335 GCACATACACGAGGAAGGGA 59.465 55.000 0.00 0.00 0.00 4.20
4648 10936 0.682292 TGTGGCACATACACGAGGAA 59.318 50.000 17.96 0.00 44.52 3.36
4677 10966 4.096833 GCTGAATGCCACATCAATCTACAA 59.903 41.667 0.00 0.00 35.15 2.41
4691 10980 3.067601 TGATGACATCATTGCTGAATGCC 59.932 43.478 14.24 0.00 39.16 4.40
4701 10990 7.232822 GCACAGATGCCATGATGACATCATT 62.233 44.000 25.19 13.13 45.75 2.57
4778 11067 5.055642 TGATTATATAAGACTCGGGCACG 57.944 43.478 0.00 0.00 42.74 5.34
4780 11069 6.455647 CAACTGATTATATAAGACTCGGGCA 58.544 40.000 1.02 0.00 0.00 5.36
4805 11094 7.891782 TCTCGAAACACGCTTTACATATAAAG 58.108 34.615 0.00 0.00 46.95 1.85
4806 11095 7.815398 TCTCGAAACACGCTTTACATATAAA 57.185 32.000 0.00 0.00 42.26 1.40
4807 11096 7.815398 TTCTCGAAACACGCTTTACATATAA 57.185 32.000 0.00 0.00 42.26 0.98
4808 11097 7.919091 AGATTCTCGAAACACGCTTTACATATA 59.081 33.333 0.00 0.00 42.26 0.86
4809 11098 6.757010 AGATTCTCGAAACACGCTTTACATAT 59.243 34.615 0.00 0.00 42.26 1.78
4810 11099 6.097356 AGATTCTCGAAACACGCTTTACATA 58.903 36.000 0.00 0.00 42.26 2.29
4811 11100 4.929808 AGATTCTCGAAACACGCTTTACAT 59.070 37.500 0.00 0.00 42.26 2.29
4812 11101 4.304110 AGATTCTCGAAACACGCTTTACA 58.696 39.130 0.00 0.00 42.26 2.41
4813 11102 4.905412 AGATTCTCGAAACACGCTTTAC 57.095 40.909 0.00 0.00 42.26 2.01
4814 11103 8.867112 ATATAAGATTCTCGAAACACGCTTTA 57.133 30.769 0.00 0.00 42.26 1.85
4815 11104 7.772332 ATATAAGATTCTCGAAACACGCTTT 57.228 32.000 0.00 0.00 42.26 3.51
4816 11105 8.867112 TTATATAAGATTCTCGAAACACGCTT 57.133 30.769 0.00 0.00 42.26 4.68
4817 11106 9.130312 GATTATATAAGATTCTCGAAACACGCT 57.870 33.333 1.02 0.00 42.26 5.07
4818 11107 8.912658 TGATTATATAAGATTCTCGAAACACGC 58.087 33.333 1.02 0.00 42.26 5.34
4853 11142 2.766313 TGCGTTGAAGCAGACATAACT 58.234 42.857 0.00 0.00 42.92 2.24
4872 11161 3.000041 TGATACTTAGCGCCTTGTGTTG 59.000 45.455 2.29 0.00 0.00 3.33
4883 11172 5.043903 TCACTTTGAGCGATGATACTTAGC 58.956 41.667 0.00 0.00 0.00 3.09
4888 11177 5.294306 TGGATTTCACTTTGAGCGATGATAC 59.706 40.000 0.00 0.00 0.00 2.24
4912 11201 5.581085 GTGTGTTCAAGAGTTGAGTTACAGT 59.419 40.000 0.00 0.00 41.38 3.55
4936 11226 0.784250 GTATGTTGCGCACGTGAACG 60.784 55.000 22.23 15.61 46.33 3.95
4946 11236 1.060553 GACACGTCATGGTATGTTGCG 59.939 52.381 0.00 0.00 0.00 4.85
5140 11430 2.023673 CCAGTTTGCTTTGGACACTCA 58.976 47.619 0.00 0.00 36.55 3.41
5142 11432 2.435372 TCCAGTTTGCTTTGGACACT 57.565 45.000 0.00 0.00 38.53 3.55
5151 11501 2.567615 ACTACCTCGATTCCAGTTTGCT 59.432 45.455 0.00 0.00 0.00 3.91
5153 11503 3.125316 GCAACTACCTCGATTCCAGTTTG 59.875 47.826 0.00 0.00 0.00 2.93
5154 11504 3.335579 GCAACTACCTCGATTCCAGTTT 58.664 45.455 0.00 0.00 0.00 2.66
5157 11507 1.134367 TCGCAACTACCTCGATTCCAG 59.866 52.381 0.00 0.00 0.00 3.86
5172 11522 0.104855 CAGTGCCTAGCCTATCGCAA 59.895 55.000 0.00 0.00 41.38 4.85
5194 11545 2.563179 GCCTTCAACTACAGAGTCCAGA 59.437 50.000 0.00 0.00 33.58 3.86
5200 11551 0.741221 GCCGGCCTTCAACTACAGAG 60.741 60.000 18.11 0.00 0.00 3.35
5205 11556 0.178987 TTTTGGCCGGCCTTCAACTA 60.179 50.000 43.34 21.57 36.94 2.24
5239 11590 1.419387 GGGGAGGATGGAGATGAACAG 59.581 57.143 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.