Multiple sequence alignment - TraesCS2D01G182100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G182100 chr2D 100.000 2684 0 0 1 2684 126945630 126948313 0.000000e+00 4957.0
1 TraesCS2D01G182100 chr2D 76.732 765 123 34 1930 2674 126958540 126959269 2.520000e-100 375.0
2 TraesCS2D01G182100 chr2D 76.957 677 131 19 1025 1697 126958614 126959269 1.960000e-96 363.0
3 TraesCS2D01G182100 chr2B 95.262 2153 59 17 552 2684 180539437 180541566 0.000000e+00 3371.0
4 TraesCS2D01G182100 chr2B 76.618 680 126 23 1025 1697 180546256 180546909 7.110000e-91 344.0
5 TraesCS2D01G182100 chr2B 77.686 484 65 27 17 475 180538799 180539264 3.430000e-64 255.0
6 TraesCS2D01G182100 chr2B 87.179 78 10 0 461 538 180539278 180539355 3.680000e-14 89.8
7 TraesCS2D01G182100 chr2A 94.465 1861 65 13 838 2684 133472925 133474761 0.000000e+00 2832.0
8 TraesCS2D01G182100 chr2A 81.081 851 101 39 1 837 133471709 133472513 2.270000e-175 625.0
9 TraesCS2D01G182100 chr2A 76.320 663 115 33 2003 2646 133484893 133485532 1.550000e-82 316.0
10 TraesCS2D01G182100 chr2A 76.131 641 125 19 1025 1660 133484907 133485524 7.220000e-81 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G182100 chr2D 126945630 126948313 2683 False 4957.0 4957 100.0000 1 2684 1 chr2D.!!$F1 2683
1 TraesCS2D01G182100 chr2D 126958540 126959269 729 False 369.0 375 76.8445 1025 2674 2 chr2D.!!$F2 1649
2 TraesCS2D01G182100 chr2B 180538799 180541566 2767 False 1238.6 3371 86.7090 17 2684 3 chr2B.!!$F2 2667
3 TraesCS2D01G182100 chr2B 180546256 180546909 653 False 344.0 344 76.6180 1025 1697 1 chr2B.!!$F1 672
4 TraesCS2D01G182100 chr2A 133471709 133474761 3052 False 1728.5 2832 87.7730 1 2684 2 chr2A.!!$F1 2683
5 TraesCS2D01G182100 chr2A 133484893 133485532 639 False 313.5 316 76.2255 1025 2646 2 chr2A.!!$F2 1621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 374 0.035739 GTTGCGGGTTCTAGGTCCAA 59.964 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 2249 0.173708 ATCGGAGAGAAGAACGCACC 59.826 55.0 0.0 0.0 43.63 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.865978 GTTCACCAATTTTTCTAAAAAGTTCGT 58.134 29.630 6.74 0.99 40.78 3.85
133 137 9.994432 ACAAATTTTTAAAAATGTGCATTTCGA 57.006 22.222 30.88 3.74 44.00 3.71
186 200 9.874205 AAACATGATGAAAGAAAAGAAACAGAA 57.126 25.926 0.00 0.00 0.00 3.02
247 277 2.922740 AACGGCTGGAGAAAGTGTAA 57.077 45.000 0.00 0.00 0.00 2.41
250 280 3.139077 ACGGCTGGAGAAAGTGTAAAAG 58.861 45.455 0.00 0.00 0.00 2.27
251 281 2.095718 CGGCTGGAGAAAGTGTAAAAGC 60.096 50.000 0.00 0.00 0.00 3.51
252 282 2.884639 GGCTGGAGAAAGTGTAAAAGCA 59.115 45.455 0.00 0.00 0.00 3.91
253 283 3.507622 GGCTGGAGAAAGTGTAAAAGCAT 59.492 43.478 0.00 0.00 0.00 3.79
283 313 8.974060 AAGGAAATATATTATCACCACGTGTT 57.026 30.769 15.65 0.00 34.79 3.32
284 314 8.378172 AGGAAATATATTATCACCACGTGTTG 57.622 34.615 15.65 11.31 34.79 3.33
303 333 2.028130 TGTTTGCCTGGTTGGTTAGTG 58.972 47.619 0.00 0.00 38.35 2.74
304 334 2.028876 GTTTGCCTGGTTGGTTAGTGT 58.971 47.619 0.00 0.00 38.35 3.55
305 335 1.686355 TTGCCTGGTTGGTTAGTGTG 58.314 50.000 0.00 0.00 38.35 3.82
306 336 0.840617 TGCCTGGTTGGTTAGTGTGA 59.159 50.000 0.00 0.00 38.35 3.58
307 337 1.202758 TGCCTGGTTGGTTAGTGTGAG 60.203 52.381 0.00 0.00 38.35 3.51
308 338 1.202770 GCCTGGTTGGTTAGTGTGAGT 60.203 52.381 0.00 0.00 38.35 3.41
309 339 2.748465 GCCTGGTTGGTTAGTGTGAGTT 60.748 50.000 0.00 0.00 38.35 3.01
316 346 6.038825 TGGTTGGTTAGTGTGAGTTAAACATG 59.961 38.462 0.00 0.00 0.00 3.21
327 357 5.531287 GTGAGTTAAACATGAGTTGGAGGTT 59.469 40.000 0.00 0.00 38.17 3.50
330 360 1.238439 AACATGAGTTGGAGGTTGCG 58.762 50.000 0.00 0.00 36.39 4.85
336 366 1.228154 GTTGGAGGTTGCGGGTTCT 60.228 57.895 0.00 0.00 0.00 3.01
338 368 0.323629 TTGGAGGTTGCGGGTTCTAG 59.676 55.000 0.00 0.00 0.00 2.43
339 369 1.221021 GGAGGTTGCGGGTTCTAGG 59.779 63.158 0.00 0.00 0.00 3.02
340 370 1.551019 GGAGGTTGCGGGTTCTAGGT 61.551 60.000 0.00 0.00 0.00 3.08
341 371 0.108281 GAGGTTGCGGGTTCTAGGTC 60.108 60.000 0.00 0.00 0.00 3.85
342 372 1.078637 GGTTGCGGGTTCTAGGTCC 60.079 63.158 0.00 0.00 0.00 4.46
343 373 1.675219 GTTGCGGGTTCTAGGTCCA 59.325 57.895 0.00 0.00 0.00 4.02
344 374 0.035739 GTTGCGGGTTCTAGGTCCAA 59.964 55.000 0.00 0.00 0.00 3.53
345 375 0.035739 TTGCGGGTTCTAGGTCCAAC 59.964 55.000 0.00 0.00 0.00 3.77
346 376 1.122632 TGCGGGTTCTAGGTCCAACA 61.123 55.000 0.00 1.98 0.00 3.33
347 377 0.672711 GCGGGTTCTAGGTCCAACAC 60.673 60.000 0.00 0.00 0.00 3.32
348 378 0.974383 CGGGTTCTAGGTCCAACACT 59.026 55.000 0.00 0.00 0.00 3.55
363 393 1.208358 CACTTCAGCCACGCATGTG 59.792 57.895 4.30 4.30 46.00 3.21
367 397 0.743688 TTCAGCCACGCATGTGTTTT 59.256 45.000 9.73 0.00 44.92 2.43
449 483 4.158764 CCGGTTTGCCAAATGACCTATAAA 59.841 41.667 0.00 0.00 34.09 1.40
468 530 1.805945 CCGGCGTCTGAAGTGCTAC 60.806 63.158 6.01 0.00 0.00 3.58
475 537 3.243569 GCGTCTGAAGTGCTACATAGGAT 60.244 47.826 0.00 0.00 0.00 3.24
486 548 1.531423 ACATAGGATACGCCGTCGAT 58.469 50.000 0.00 0.00 43.43 3.59
534 596 8.116753 CCGACTAAGACATGTCAATAAAATCAC 58.883 37.037 27.02 7.25 33.18 3.06
546 608 8.519526 TGTCAATAAAATCACAAGATTACCACC 58.480 33.333 0.00 0.00 43.52 4.61
548 610 6.693315 ATAAAATCACAAGATTACCACCCG 57.307 37.500 0.00 0.00 43.52 5.28
549 611 2.038387 ATCACAAGATTACCACCCGC 57.962 50.000 0.00 0.00 0.00 6.13
550 612 0.687920 TCACAAGATTACCACCCGCA 59.312 50.000 0.00 0.00 0.00 5.69
629 761 9.226606 CTAGGTCCAACACTTTTATGTAATGAA 57.773 33.333 0.00 0.00 30.75 2.57
651 783 1.228306 CAGTGTACCCGGCCCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
654 786 0.824595 GTGTACCCGGCCCAAAAAGT 60.825 55.000 0.00 0.00 0.00 2.66
679 812 6.902416 TGAGATTCCATTGGACCCAAAATATT 59.098 34.615 4.45 0.00 39.55 1.28
718 852 1.081376 GACACACACCGGACGAGAG 60.081 63.158 9.46 0.00 0.00 3.20
996 1554 1.965754 AATCGCAGCAGGAGGAGGAC 61.966 60.000 0.00 0.00 0.00 3.85
1665 2223 2.122813 CCCAGCCCTCCGATACCT 60.123 66.667 0.00 0.00 0.00 3.08
1684 2242 3.067180 ACCTTCGTTCGACTACAAGTGAA 59.933 43.478 0.00 0.00 0.00 3.18
1720 2280 6.531948 CGTTCTTCTCTCCGATCTGTATTTTT 59.468 38.462 0.00 0.00 0.00 1.94
1728 2288 7.109501 TCTCCGATCTGTATTTTTGGATTCAA 58.890 34.615 0.00 0.00 0.00 2.69
1745 2305 8.059798 TGGATTCAATTTCAGATCTTTTCTCC 57.940 34.615 0.00 0.00 29.93 3.71
1746 2306 7.892241 TGGATTCAATTTCAGATCTTTTCTCCT 59.108 33.333 0.00 0.00 29.93 3.69
1747 2307 8.189460 GGATTCAATTTCAGATCTTTTCTCCTG 58.811 37.037 0.00 0.00 29.93 3.86
1748 2308 6.506500 TCAATTTCAGATCTTTTCTCCTGC 57.493 37.500 0.00 0.00 29.93 4.85
1749 2309 6.243900 TCAATTTCAGATCTTTTCTCCTGCT 58.756 36.000 0.00 0.00 29.93 4.24
1750 2310 6.150641 TCAATTTCAGATCTTTTCTCCTGCTG 59.849 38.462 0.00 0.00 29.93 4.41
1751 2311 4.630644 TTCAGATCTTTTCTCCTGCTGT 57.369 40.909 0.00 0.00 29.93 4.40
1752 2312 4.630644 TCAGATCTTTTCTCCTGCTGTT 57.369 40.909 0.00 0.00 29.93 3.16
1753 2313 4.978099 TCAGATCTTTTCTCCTGCTGTTT 58.022 39.130 0.00 0.00 29.93 2.83
1754 2314 5.380043 TCAGATCTTTTCTCCTGCTGTTTT 58.620 37.500 0.00 0.00 29.93 2.43
1755 2315 5.829924 TCAGATCTTTTCTCCTGCTGTTTTT 59.170 36.000 0.00 0.00 29.93 1.94
1756 2316 6.998074 TCAGATCTTTTCTCCTGCTGTTTTTA 59.002 34.615 0.00 0.00 29.93 1.52
1766 2326 5.060506 TCCTGCTGTTTTTAAGTTCGATCA 58.939 37.500 0.00 0.00 0.00 2.92
1774 2334 7.992008 TGTTTTTAAGTTCGATCAGGTTTCTT 58.008 30.769 0.00 0.00 0.00 2.52
1775 2335 8.126700 TGTTTTTAAGTTCGATCAGGTTTCTTC 58.873 33.333 0.00 0.00 0.00 2.87
1806 2366 7.229506 GCTTATTTATTACTTGGTGATGAGGCT 59.770 37.037 0.00 0.00 0.00 4.58
1814 2374 4.819761 TGATGAGGCTGTCCGCGC 62.820 66.667 0.00 0.00 40.44 6.86
1864 2424 9.660180 CAAGAAGCCTTATTACCTCCTTATATC 57.340 37.037 0.00 0.00 0.00 1.63
1865 2425 8.974292 AGAAGCCTTATTACCTCCTTATATCA 57.026 34.615 0.00 0.00 0.00 2.15
1866 2426 9.041354 AGAAGCCTTATTACCTCCTTATATCAG 57.959 37.037 0.00 0.00 0.00 2.90
1868 2428 8.368962 AGCCTTATTACCTCCTTATATCAGAC 57.631 38.462 0.00 0.00 0.00 3.51
1901 2463 9.904647 GATCGTGTTATATATACTCTCGTTCTC 57.095 37.037 13.34 8.69 0.00 2.87
1902 2464 7.947090 TCGTGTTATATATACTCTCGTTCTCG 58.053 38.462 13.34 0.00 38.55 4.04
1903 2465 7.596621 TCGTGTTATATATACTCTCGTTCTCGT 59.403 37.037 13.34 0.00 38.33 4.18
1904 2466 8.219769 CGTGTTATATATACTCTCGTTCTCGTT 58.780 37.037 0.00 0.00 38.33 3.85
1905 2467 9.527566 GTGTTATATATACTCTCGTTCTCGTTC 57.472 37.037 0.00 0.00 38.33 3.95
1906 2468 9.486497 TGTTATATATACTCTCGTTCTCGTTCT 57.514 33.333 0.00 0.00 38.33 3.01
1907 2469 9.743937 GTTATATATACTCTCGTTCTCGTTCTG 57.256 37.037 0.00 0.00 38.33 3.02
1908 2470 7.966246 ATATATACTCTCGTTCTCGTTCTGT 57.034 36.000 0.00 0.00 38.33 3.41
1923 2485 1.492764 TCTGTACCCCGGGAAGATTC 58.507 55.000 26.32 6.59 0.00 2.52
1965 2527 3.644884 ATCTTCAGATAGGGTTACGCG 57.355 47.619 3.53 3.53 32.01 6.01
1991 2553 1.853963 ACTATGTCGGCTCCTGTCTT 58.146 50.000 0.00 0.00 0.00 3.01
2095 2657 4.039973 TCGGTGGTTCTGTCTATCACTTTT 59.960 41.667 0.00 0.00 0.00 2.27
2127 2689 0.255890 ATAACTCGCCCAATGGTGCT 59.744 50.000 10.23 0.00 42.19 4.40
2238 2800 1.293498 CTGCACCTCAGCCTACGTT 59.707 57.895 0.00 0.00 35.78 3.99
2346 2908 4.988598 CGCTCGGCACTTGTGGGT 62.989 66.667 2.81 0.00 0.00 4.51
2397 2959 1.978617 CCTCATGGCCAACCGCTTT 60.979 57.895 10.96 0.00 39.70 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 111 9.994432 TCGAAATGCACATTTTTAAAAATTTGT 57.006 22.222 27.87 20.80 40.77 2.83
199 213 3.072476 TCTTCTTCTGGACCGGTTTTCAT 59.928 43.478 9.42 0.00 0.00 2.57
200 214 2.436542 TCTTCTTCTGGACCGGTTTTCA 59.563 45.455 9.42 7.32 0.00 2.69
201 215 3.121738 TCTTCTTCTGGACCGGTTTTC 57.878 47.619 9.42 2.14 0.00 2.29
275 305 1.065600 CCAGGCAAACAACACGTGG 59.934 57.895 21.57 5.28 33.50 4.94
276 306 0.172352 AACCAGGCAAACAACACGTG 59.828 50.000 15.48 15.48 0.00 4.49
283 313 2.028130 CACTAACCAACCAGGCAAACA 58.972 47.619 0.00 0.00 43.14 2.83
284 314 2.028876 ACACTAACCAACCAGGCAAAC 58.971 47.619 0.00 0.00 43.14 2.93
303 333 5.063880 ACCTCCAACTCATGTTTAACTCAC 58.936 41.667 0.00 0.00 33.52 3.51
304 334 5.304686 ACCTCCAACTCATGTTTAACTCA 57.695 39.130 0.00 0.00 33.52 3.41
305 335 5.562890 GCAACCTCCAACTCATGTTTAACTC 60.563 44.000 0.00 0.00 33.52 3.01
306 336 4.278419 GCAACCTCCAACTCATGTTTAACT 59.722 41.667 0.00 0.00 33.52 2.24
307 337 4.546570 GCAACCTCCAACTCATGTTTAAC 58.453 43.478 0.00 0.00 33.52 2.01
308 338 3.252215 CGCAACCTCCAACTCATGTTTAA 59.748 43.478 0.00 0.00 33.52 1.52
309 339 2.811431 CGCAACCTCCAACTCATGTTTA 59.189 45.455 0.00 0.00 33.52 2.01
316 346 1.228154 AACCCGCAACCTCCAACTC 60.228 57.895 0.00 0.00 0.00 3.01
327 357 1.122632 TGTTGGACCTAGAACCCGCA 61.123 55.000 0.00 0.00 0.00 5.69
330 360 2.370849 TGAAGTGTTGGACCTAGAACCC 59.629 50.000 0.00 0.00 0.00 4.11
336 366 1.071699 GTGGCTGAAGTGTTGGACCTA 59.928 52.381 0.00 0.00 0.00 3.08
338 368 1.507141 CGTGGCTGAAGTGTTGGACC 61.507 60.000 0.00 0.00 0.00 4.46
339 369 1.941812 CGTGGCTGAAGTGTTGGAC 59.058 57.895 0.00 0.00 0.00 4.02
340 370 1.891919 GCGTGGCTGAAGTGTTGGA 60.892 57.895 0.00 0.00 0.00 3.53
341 371 1.518056 ATGCGTGGCTGAAGTGTTGG 61.518 55.000 0.00 0.00 0.00 3.77
342 372 0.386352 CATGCGTGGCTGAAGTGTTG 60.386 55.000 0.00 0.00 0.00 3.33
343 373 0.819259 ACATGCGTGGCTGAAGTGTT 60.819 50.000 11.36 0.00 0.00 3.32
344 374 1.227943 ACATGCGTGGCTGAAGTGT 60.228 52.632 11.36 0.00 0.00 3.55
345 375 1.208358 CACATGCGTGGCTGAAGTG 59.792 57.895 11.36 0.00 39.64 3.16
346 376 3.659334 CACATGCGTGGCTGAAGT 58.341 55.556 11.36 0.00 39.64 3.01
363 393 6.591313 TTTTTCTGGTTTAATCCGCAAAAC 57.409 33.333 9.45 0.00 35.34 2.43
449 483 2.273179 TAGCACTTCAGACGCCGGT 61.273 57.895 1.90 0.00 0.00 5.28
468 530 1.199327 ACATCGACGGCGTATCCTATG 59.801 52.381 14.74 14.32 38.98 2.23
475 537 2.475466 GGGAGACATCGACGGCGTA 61.475 63.158 14.74 0.00 38.98 4.42
486 548 2.168521 CAGAGCGGAATTTAGGGAGACA 59.831 50.000 0.00 0.00 0.00 3.41
534 596 3.651803 TTTTTGCGGGTGGTAATCTTG 57.348 42.857 0.00 0.00 0.00 3.02
607 739 9.821662 GTACTTCATTACATAAAAGTGTTGGAC 57.178 33.333 0.00 0.00 34.09 4.02
629 761 1.986210 GGGCCGGGTACACTGTACT 60.986 63.158 17.08 0.00 0.00 2.73
651 783 2.649312 TGGGTCCAATGGAATCTCACTT 59.351 45.455 2.31 0.00 31.38 3.16
654 786 3.824001 TTTGGGTCCAATGGAATCTCA 57.176 42.857 2.31 0.00 35.70 3.27
679 812 0.603707 CGAACTTGCAAGGCTCCTCA 60.604 55.000 29.18 0.00 0.00 3.86
869 1415 2.431942 CGTCGAAACGTGGGGGAG 60.432 66.667 0.00 0.00 43.94 4.30
1691 2249 0.173708 ATCGGAGAGAAGAACGCACC 59.826 55.000 0.00 0.00 43.63 5.01
1693 2251 1.133216 CAGATCGGAGAGAAGAACGCA 59.867 52.381 0.00 0.00 43.63 5.24
1694 2252 1.133407 ACAGATCGGAGAGAAGAACGC 59.867 52.381 0.00 0.00 43.63 4.84
1695 2253 4.822036 ATACAGATCGGAGAGAAGAACG 57.178 45.455 0.00 0.00 43.63 3.95
1699 2259 6.341316 TCCAAAAATACAGATCGGAGAGAAG 58.659 40.000 0.00 0.00 43.63 2.85
1720 2280 7.892241 AGGAGAAAAGATCTGAAATTGAATCCA 59.108 33.333 0.00 0.00 38.96 3.41
1728 2288 5.568392 ACAGCAGGAGAAAAGATCTGAAAT 58.432 37.500 0.00 0.00 38.96 2.17
1737 2297 6.414987 CGAACTTAAAAACAGCAGGAGAAAAG 59.585 38.462 0.00 0.00 0.00 2.27
1745 2305 5.049405 ACCTGATCGAACTTAAAAACAGCAG 60.049 40.000 0.00 0.00 0.00 4.24
1746 2306 4.819630 ACCTGATCGAACTTAAAAACAGCA 59.180 37.500 0.00 0.00 0.00 4.41
1747 2307 5.358298 ACCTGATCGAACTTAAAAACAGC 57.642 39.130 0.00 0.00 0.00 4.40
1748 2308 7.639945 AGAAACCTGATCGAACTTAAAAACAG 58.360 34.615 0.00 0.00 0.00 3.16
1749 2309 7.562454 AGAAACCTGATCGAACTTAAAAACA 57.438 32.000 0.00 0.00 0.00 2.83
1750 2310 7.590322 GGAAGAAACCTGATCGAACTTAAAAAC 59.410 37.037 0.00 0.00 0.00 2.43
1751 2311 7.501225 AGGAAGAAACCTGATCGAACTTAAAAA 59.499 33.333 0.00 0.00 39.01 1.94
1752 2312 6.996282 AGGAAGAAACCTGATCGAACTTAAAA 59.004 34.615 0.00 0.00 39.01 1.52
1753 2313 6.531021 AGGAAGAAACCTGATCGAACTTAAA 58.469 36.000 0.00 0.00 39.01 1.52
1754 2314 6.110411 AGGAAGAAACCTGATCGAACTTAA 57.890 37.500 0.00 0.00 39.01 1.85
1755 2315 5.740290 AGGAAGAAACCTGATCGAACTTA 57.260 39.130 0.00 0.00 39.01 2.24
1756 2316 4.625607 AGGAAGAAACCTGATCGAACTT 57.374 40.909 0.00 0.00 39.01 2.66
1806 2366 2.707849 GGACTCCTAAGCGCGGACA 61.708 63.158 8.83 0.00 0.00 4.02
1814 2374 3.442625 TGTACACGACATGGACTCCTAAG 59.557 47.826 0.00 0.00 43.47 2.18
1901 2463 1.217244 CTTCCCGGGGTACAGAACG 59.783 63.158 23.50 0.00 0.00 3.95
1902 2464 1.201424 ATCTTCCCGGGGTACAGAAC 58.799 55.000 23.50 0.00 0.00 3.01
1903 2465 1.835531 GAATCTTCCCGGGGTACAGAA 59.164 52.381 23.50 5.08 0.00 3.02
1904 2466 1.007963 AGAATCTTCCCGGGGTACAGA 59.992 52.381 23.50 17.11 0.00 3.41
1905 2467 1.497161 AGAATCTTCCCGGGGTACAG 58.503 55.000 23.50 12.01 0.00 2.74
1906 2468 2.023695 ACTAGAATCTTCCCGGGGTACA 60.024 50.000 23.50 0.00 0.00 2.90
1907 2469 2.675583 ACTAGAATCTTCCCGGGGTAC 58.324 52.381 23.50 6.78 0.00 3.34
1908 2470 3.303049 GAACTAGAATCTTCCCGGGGTA 58.697 50.000 23.50 8.50 0.00 3.69
1923 2485 1.390123 CGATGCGTTGTGGTGAACTAG 59.610 52.381 0.00 0.00 0.00 2.57
1965 2527 2.826725 AGGAGCCGACATAGTATTAGCC 59.173 50.000 0.00 0.00 0.00 3.93
2095 2657 2.939640 GCGAGTTATGAAGGCCCTTGAA 60.940 50.000 0.00 0.00 0.00 2.69
2127 2689 1.436195 GCATGCCGCCAGTAATTCGA 61.436 55.000 6.36 0.00 32.94 3.71
2177 2739 2.281761 ACACAGCAAAGCTCCCGG 60.282 61.111 0.00 0.00 36.40 5.73
2652 3223 2.357637 CGCACCTTCCTTTCACTTGAAA 59.642 45.455 4.39 4.39 41.29 2.69
2654 3225 1.593196 CGCACCTTCCTTTCACTTGA 58.407 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.