Multiple sequence alignment - TraesCS2D01G182000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G182000 chr2D 100.000 2493 0 0 1 2493 126900904 126898412 0.000000e+00 4604.0
1 TraesCS2D01G182000 chr2D 91.919 99 7 1 1 98 488887175 488887077 1.200000e-28 137.0
2 TraesCS2D01G182000 chr2A 86.876 922 54 25 1159 2057 133469539 133468662 0.000000e+00 970.0
3 TraesCS2D01G182000 chr2A 86.348 586 39 19 495 1041 133470174 133469591 3.550000e-168 601.0
4 TraesCS2D01G182000 chr2A 87.152 467 22 18 2044 2493 133466929 133466484 1.720000e-136 496.0
5 TraesCS2D01G182000 chr2B 89.052 612 42 15 1056 1658 180437130 180436535 0.000000e+00 736.0
6 TraesCS2D01G182000 chr2B 86.598 679 52 24 420 1065 180437829 180437157 0.000000e+00 713.0
7 TraesCS2D01G182000 chr2B 86.179 246 28 6 2174 2414 490314450 490314694 6.840000e-66 261.0
8 TraesCS2D01G182000 chr5A 94.294 333 17 2 1 331 548386589 548386921 2.210000e-140 508.0
9 TraesCS2D01G182000 chr4B 87.903 372 25 3 1 371 366467397 366467749 1.070000e-113 420.0
10 TraesCS2D01G182000 chr4B 84.375 96 9 6 295 387 648114106 648114198 3.420000e-14 89.8
11 TraesCS2D01G182000 chr7A 87.062 371 27 3 4 372 166833489 166833138 1.390000e-107 399.0
12 TraesCS2D01G182000 chr7A 86.630 359 26 4 17 372 166862666 166862327 6.510000e-101 377.0
13 TraesCS2D01G182000 chr7A 92.982 57 1 2 318 371 48514223 48514167 2.060000e-11 80.5
14 TraesCS2D01G182000 chr7A 85.526 76 6 4 306 377 276899157 276899083 9.560000e-10 75.0
15 TraesCS2D01G182000 chr4A 83.065 248 30 8 145 384 602897026 602896783 5.400000e-52 215.0
16 TraesCS2D01G182000 chr7D 92.929 99 6 1 1 98 40144212 40144114 2.580000e-30 143.0
17 TraesCS2D01G182000 chr7D 75.141 177 33 7 203 373 112952780 112952609 3.440000e-09 73.1
18 TraesCS2D01G182000 chr5D 92.929 99 6 1 1 98 432014849 432014751 2.580000e-30 143.0
19 TraesCS2D01G182000 chr3D 90.909 99 7 2 1 98 184443910 184443813 5.590000e-27 132.0
20 TraesCS2D01G182000 chr1B 92.647 68 4 1 1 67 30221340 30221407 2.040000e-16 97.1
21 TraesCS2D01G182000 chr7B 91.525 59 2 2 318 375 365367600 365367544 7.390000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G182000 chr2D 126898412 126900904 2492 True 4604.0 4604 100.000 1 2493 1 chr2D.!!$R1 2492
1 TraesCS2D01G182000 chr2A 133466484 133470174 3690 True 689.0 970 86.792 495 2493 3 chr2A.!!$R1 1998
2 TraesCS2D01G182000 chr2B 180436535 180437829 1294 True 724.5 736 87.825 420 1658 2 chr2B.!!$R1 1238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 415 0.476771 GGTTTCCACCACCTTCTGGA 59.523 55.0 0.0 0.0 43.95 3.86 F
418 419 0.698238 TCCACCACCTTCTGGATTGG 59.302 55.0 0.0 0.0 43.95 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1563 0.036732 AGAAGAAGCGGTTGATGGCA 59.963 50.0 3.7 0.0 0.00 4.92 R
1693 1819 0.036952 CACTCCATATAGCCAGCGGG 60.037 60.0 0.0 0.0 37.18 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.956640 AGAATTATCCATTGATCTAACCATCTC 57.043 33.333 0.00 0.00 32.18 2.75
29 30 9.956640 GAATTATCCATTGATCTAACCATCTCT 57.043 33.333 0.00 0.00 32.18 3.10
34 35 9.956640 ATCCATTGATCTAACCATCTCTTAATC 57.043 33.333 0.00 0.00 0.00 1.75
35 36 9.163894 TCCATTGATCTAACCATCTCTTAATCT 57.836 33.333 0.00 0.00 0.00 2.40
36 37 9.790344 CCATTGATCTAACCATCTCTTAATCTT 57.210 33.333 0.00 0.00 0.00 2.40
64 65 9.466497 TTTCTCAGATTTTAGTTATCCATTGCT 57.534 29.630 0.00 0.00 0.00 3.91
65 66 9.466497 TTCTCAGATTTTAGTTATCCATTGCTT 57.534 29.630 0.00 0.00 0.00 3.91
94 95 9.354673 ACAATGATATTAAGACCAATTGTAGGG 57.645 33.333 4.43 0.00 0.00 3.53
95 96 9.573166 CAATGATATTAAGACCAATTGTAGGGA 57.427 33.333 4.43 0.00 0.00 4.20
97 98 9.745018 ATGATATTAAGACCAATTGTAGGGATG 57.255 33.333 4.43 0.00 0.00 3.51
98 99 7.665559 TGATATTAAGACCAATTGTAGGGATGC 59.334 37.037 4.43 0.00 0.00 3.91
99 100 3.737559 AAGACCAATTGTAGGGATGCA 57.262 42.857 4.43 0.00 0.00 3.96
100 101 3.959495 AGACCAATTGTAGGGATGCAT 57.041 42.857 0.00 0.00 0.00 3.96
101 102 5.387113 AAGACCAATTGTAGGGATGCATA 57.613 39.130 0.00 0.00 0.00 3.14
102 103 5.589367 AGACCAATTGTAGGGATGCATAT 57.411 39.130 0.00 0.00 0.00 1.78
103 104 5.564550 AGACCAATTGTAGGGATGCATATC 58.435 41.667 0.00 0.00 0.00 1.63
117 118 6.233430 GATGCATATCCACATACTGAACAC 57.767 41.667 0.00 0.00 0.00 3.32
118 119 5.096443 TGCATATCCACATACTGAACACA 57.904 39.130 0.00 0.00 0.00 3.72
119 120 5.495640 TGCATATCCACATACTGAACACAA 58.504 37.500 0.00 0.00 0.00 3.33
120 121 6.121590 TGCATATCCACATACTGAACACAAT 58.878 36.000 0.00 0.00 0.00 2.71
121 122 6.038492 TGCATATCCACATACTGAACACAATG 59.962 38.462 0.00 0.00 0.00 2.82
122 123 6.513884 GCATATCCACATACTGAACACAATGG 60.514 42.308 0.00 0.00 0.00 3.16
123 124 4.632327 TCCACATACTGAACACAATGGA 57.368 40.909 0.00 0.00 32.62 3.41
124 125 4.979335 TCCACATACTGAACACAATGGAA 58.021 39.130 0.00 0.00 32.13 3.53
125 126 5.003160 TCCACATACTGAACACAATGGAAG 58.997 41.667 0.00 0.00 32.13 3.46
126 127 4.156556 CCACATACTGAACACAATGGAAGG 59.843 45.833 0.00 0.00 0.00 3.46
127 128 4.761739 CACATACTGAACACAATGGAAGGT 59.238 41.667 0.00 0.00 0.00 3.50
128 129 5.241506 CACATACTGAACACAATGGAAGGTT 59.758 40.000 0.00 0.00 0.00 3.50
129 130 5.241506 ACATACTGAACACAATGGAAGGTTG 59.758 40.000 0.00 0.00 0.00 3.77
130 131 2.362077 ACTGAACACAATGGAAGGTTGC 59.638 45.455 0.00 0.00 0.00 4.17
131 132 2.624838 CTGAACACAATGGAAGGTTGCT 59.375 45.455 0.00 0.00 0.00 3.91
132 133 3.030291 TGAACACAATGGAAGGTTGCTT 58.970 40.909 0.00 0.00 0.00 3.91
133 134 3.450457 TGAACACAATGGAAGGTTGCTTT 59.550 39.130 0.00 0.00 0.00 3.51
134 135 4.081198 TGAACACAATGGAAGGTTGCTTTT 60.081 37.500 0.00 0.00 0.00 2.27
135 136 4.058721 ACACAATGGAAGGTTGCTTTTC 57.941 40.909 0.00 0.00 0.00 2.29
136 137 3.450457 ACACAATGGAAGGTTGCTTTTCA 59.550 39.130 0.00 0.00 0.00 2.69
137 138 4.081198 ACACAATGGAAGGTTGCTTTTCAA 60.081 37.500 0.00 0.00 0.00 2.69
138 139 5.058490 CACAATGGAAGGTTGCTTTTCAAT 58.942 37.500 0.00 0.00 36.99 2.57
139 140 6.183360 ACACAATGGAAGGTTGCTTTTCAATA 60.183 34.615 0.00 0.00 36.99 1.90
140 141 6.705381 CACAATGGAAGGTTGCTTTTCAATAA 59.295 34.615 0.00 0.00 36.99 1.40
141 142 7.388500 CACAATGGAAGGTTGCTTTTCAATAAT 59.612 33.333 0.00 0.00 36.99 1.28
142 143 8.592809 ACAATGGAAGGTTGCTTTTCAATAATA 58.407 29.630 0.00 0.00 36.99 0.98
143 144 9.434420 CAATGGAAGGTTGCTTTTCAATAATAA 57.566 29.630 0.00 0.00 36.99 1.40
171 172 8.014070 ACTAGCTCTCTTATTCCTTTAGAACC 57.986 38.462 0.00 0.00 37.29 3.62
172 173 7.842236 ACTAGCTCTCTTATTCCTTTAGAACCT 59.158 37.037 0.00 0.00 37.29 3.50
173 174 9.357161 CTAGCTCTCTTATTCCTTTAGAACCTA 57.643 37.037 0.00 0.00 37.29 3.08
174 175 8.791298 AGCTCTCTTATTCCTTTAGAACCTAT 57.209 34.615 0.00 0.00 37.29 2.57
175 176 8.866093 AGCTCTCTTATTCCTTTAGAACCTATC 58.134 37.037 0.00 0.00 37.29 2.08
176 177 8.643324 GCTCTCTTATTCCTTTAGAACCTATCA 58.357 37.037 0.00 0.00 37.29 2.15
183 184 7.754851 TTCCTTTAGAACCTATCAAAACACC 57.245 36.000 0.00 0.00 0.00 4.16
184 185 5.935789 TCCTTTAGAACCTATCAAAACACCG 59.064 40.000 0.00 0.00 0.00 4.94
185 186 5.935789 CCTTTAGAACCTATCAAAACACCGA 59.064 40.000 0.00 0.00 0.00 4.69
186 187 6.428771 CCTTTAGAACCTATCAAAACACCGAA 59.571 38.462 0.00 0.00 0.00 4.30
187 188 6.790285 TTAGAACCTATCAAAACACCGAAC 57.210 37.500 0.00 0.00 0.00 3.95
188 189 4.710324 AGAACCTATCAAAACACCGAACA 58.290 39.130 0.00 0.00 0.00 3.18
189 190 5.127491 AGAACCTATCAAAACACCGAACAA 58.873 37.500 0.00 0.00 0.00 2.83
190 191 5.591067 AGAACCTATCAAAACACCGAACAAA 59.409 36.000 0.00 0.00 0.00 2.83
191 192 6.264518 AGAACCTATCAAAACACCGAACAAAT 59.735 34.615 0.00 0.00 0.00 2.32
192 193 6.399639 ACCTATCAAAACACCGAACAAATT 57.600 33.333 0.00 0.00 0.00 1.82
193 194 7.513371 ACCTATCAAAACACCGAACAAATTA 57.487 32.000 0.00 0.00 0.00 1.40
194 195 7.942990 ACCTATCAAAACACCGAACAAATTAA 58.057 30.769 0.00 0.00 0.00 1.40
195 196 8.414778 ACCTATCAAAACACCGAACAAATTAAA 58.585 29.630 0.00 0.00 0.00 1.52
196 197 9.250624 CCTATCAAAACACCGAACAAATTAAAA 57.749 29.630 0.00 0.00 0.00 1.52
207 208 9.862371 ACCGAACAAATTAAAAATACATATGCA 57.138 25.926 1.58 0.00 0.00 3.96
218 219 8.477984 AAAAATACATATGCAACAACATGACC 57.522 30.769 1.58 0.00 0.00 4.02
219 220 6.772360 AATACATATGCAACAACATGACCA 57.228 33.333 1.58 0.00 0.00 4.02
220 221 4.439305 ACATATGCAACAACATGACCAC 57.561 40.909 1.58 0.00 0.00 4.16
221 222 3.825585 ACATATGCAACAACATGACCACA 59.174 39.130 1.58 0.00 0.00 4.17
222 223 4.280425 ACATATGCAACAACATGACCACAA 59.720 37.500 1.58 0.00 0.00 3.33
223 224 5.047164 ACATATGCAACAACATGACCACAAT 60.047 36.000 1.58 0.00 0.00 2.71
224 225 3.095102 TGCAACAACATGACCACAATG 57.905 42.857 0.00 0.00 0.00 2.82
225 226 2.692041 TGCAACAACATGACCACAATGA 59.308 40.909 0.00 0.00 0.00 2.57
226 227 3.052036 GCAACAACATGACCACAATGAC 58.948 45.455 0.00 0.00 0.00 3.06
227 228 3.299162 CAACAACATGACCACAATGACG 58.701 45.455 0.00 0.00 0.00 4.35
228 229 2.571212 ACAACATGACCACAATGACGT 58.429 42.857 0.00 0.00 0.00 4.34
229 230 2.548057 ACAACATGACCACAATGACGTC 59.452 45.455 9.11 9.11 0.00 4.34
230 231 2.807967 CAACATGACCACAATGACGTCT 59.192 45.455 17.92 0.00 0.00 4.18
231 232 2.688507 ACATGACCACAATGACGTCTC 58.311 47.619 17.92 4.41 0.00 3.36
232 233 2.037121 ACATGACCACAATGACGTCTCA 59.963 45.455 17.92 10.38 0.00 3.27
233 234 2.148916 TGACCACAATGACGTCTCAC 57.851 50.000 17.92 0.00 0.00 3.51
234 235 1.686587 TGACCACAATGACGTCTCACT 59.313 47.619 17.92 0.00 0.00 3.41
235 236 2.102420 TGACCACAATGACGTCTCACTT 59.898 45.455 17.92 2.44 0.00 3.16
236 237 3.131396 GACCACAATGACGTCTCACTTT 58.869 45.455 17.92 0.12 0.00 2.66
237 238 3.541632 ACCACAATGACGTCTCACTTTT 58.458 40.909 17.92 0.00 0.00 2.27
238 239 3.312421 ACCACAATGACGTCTCACTTTTG 59.688 43.478 17.92 12.27 0.00 2.44
239 240 3.303990 CCACAATGACGTCTCACTTTTGG 60.304 47.826 17.92 12.75 0.00 3.28
240 241 3.559655 CACAATGACGTCTCACTTTTGGA 59.440 43.478 17.92 0.00 0.00 3.53
241 242 4.035091 CACAATGACGTCTCACTTTTGGAA 59.965 41.667 17.92 0.00 0.00 3.53
242 243 4.273480 ACAATGACGTCTCACTTTTGGAAG 59.727 41.667 17.92 0.00 38.87 3.46
243 244 3.812156 TGACGTCTCACTTTTGGAAGA 57.188 42.857 17.92 0.00 36.69 2.87
244 245 4.131649 TGACGTCTCACTTTTGGAAGAA 57.868 40.909 17.92 0.00 36.69 2.52
245 246 3.869246 TGACGTCTCACTTTTGGAAGAAC 59.131 43.478 17.92 0.00 36.69 3.01
246 247 3.203716 ACGTCTCACTTTTGGAAGAACC 58.796 45.455 0.00 0.00 36.69 3.62
247 248 2.221055 CGTCTCACTTTTGGAAGAACCG 59.779 50.000 0.00 0.00 42.61 4.44
248 249 2.031944 GTCTCACTTTTGGAAGAACCGC 60.032 50.000 0.00 0.00 42.61 5.68
249 250 2.158813 TCTCACTTTTGGAAGAACCGCT 60.159 45.455 0.00 0.00 42.61 5.52
250 251 2.618709 CTCACTTTTGGAAGAACCGCTT 59.381 45.455 0.00 0.00 42.61 4.68
251 252 3.020984 TCACTTTTGGAAGAACCGCTTT 58.979 40.909 0.00 0.00 42.61 3.51
252 253 4.200874 TCACTTTTGGAAGAACCGCTTTA 58.799 39.130 0.00 0.00 42.61 1.85
253 254 4.274950 TCACTTTTGGAAGAACCGCTTTAG 59.725 41.667 0.00 0.00 42.61 1.85
254 255 4.036380 CACTTTTGGAAGAACCGCTTTAGT 59.964 41.667 0.00 0.00 42.61 2.24
255 256 4.036380 ACTTTTGGAAGAACCGCTTTAGTG 59.964 41.667 0.00 0.00 42.61 2.74
256 257 3.478857 TTGGAAGAACCGCTTTAGTGA 57.521 42.857 0.00 0.00 42.61 3.41
257 258 2.762745 TGGAAGAACCGCTTTAGTGAC 58.237 47.619 0.00 0.00 42.61 3.67
258 259 2.103432 TGGAAGAACCGCTTTAGTGACA 59.897 45.455 0.00 0.00 42.61 3.58
259 260 3.244422 TGGAAGAACCGCTTTAGTGACAT 60.244 43.478 0.00 0.00 42.61 3.06
260 261 3.371285 GGAAGAACCGCTTTAGTGACATC 59.629 47.826 0.00 0.00 36.83 3.06
261 262 3.678056 AGAACCGCTTTAGTGACATCA 57.322 42.857 0.00 0.00 0.00 3.07
262 263 3.326747 AGAACCGCTTTAGTGACATCAC 58.673 45.455 3.72 3.72 46.77 3.06
263 264 4.742440 AAGAACCGCTTTAGTGACATCACA 60.742 41.667 14.23 0.00 40.68 3.58
264 265 6.201382 AAGAACCGCTTTAGTGACATCACAA 61.201 40.000 14.23 4.23 40.68 3.33
265 266 8.156720 AAGAACCGCTTTAGTGACATCACAAC 62.157 42.308 14.23 0.00 40.68 3.32
276 277 6.726258 GTGACATCACAACATTGTCTATCA 57.274 37.500 7.15 0.00 45.75 2.15
277 278 7.132694 GTGACATCACAACATTGTCTATCAA 57.867 36.000 7.15 0.00 45.75 2.57
278 279 7.755591 GTGACATCACAACATTGTCTATCAAT 58.244 34.615 7.15 0.00 44.84 2.57
279 280 8.239314 GTGACATCACAACATTGTCTATCAATT 58.761 33.333 7.15 0.00 43.38 2.32
280 281 8.795513 TGACATCACAACATTGTCTATCAATTT 58.204 29.630 0.00 0.00 43.33 1.82
334 335 7.943079 ACAATGATGTGAATCTTATTGGTCA 57.057 32.000 0.00 0.00 38.69 4.02
335 336 8.352137 ACAATGATGTGAATCTTATTGGTCAA 57.648 30.769 0.00 0.00 38.69 3.18
336 337 8.246180 ACAATGATGTGAATCTTATTGGTCAAC 58.754 33.333 0.00 0.00 38.69 3.18
337 338 6.421377 TGATGTGAATCTTATTGGTCAACG 57.579 37.500 0.00 0.00 0.00 4.10
338 339 5.937540 TGATGTGAATCTTATTGGTCAACGT 59.062 36.000 0.00 0.00 0.00 3.99
339 340 6.429692 TGATGTGAATCTTATTGGTCAACGTT 59.570 34.615 0.00 0.00 0.00 3.99
340 341 6.627395 TGTGAATCTTATTGGTCAACGTTT 57.373 33.333 0.00 0.00 0.00 3.60
341 342 6.434596 TGTGAATCTTATTGGTCAACGTTTG 58.565 36.000 0.00 0.00 0.00 2.93
342 343 6.261158 TGTGAATCTTATTGGTCAACGTTTGA 59.739 34.615 0.00 0.00 37.33 2.69
353 354 2.022069 CGTTTGACGTGCGTTGCA 59.978 55.556 0.00 0.00 36.74 4.08
370 371 1.429463 GCACGTGCAAGCTTACTAGT 58.571 50.000 34.52 0.00 41.59 2.57
371 372 1.126846 GCACGTGCAAGCTTACTAGTG 59.873 52.381 34.52 15.89 41.59 2.74
372 373 2.404215 CACGTGCAAGCTTACTAGTGT 58.596 47.619 0.82 0.00 0.00 3.55
373 374 3.571571 CACGTGCAAGCTTACTAGTGTA 58.428 45.455 0.82 0.00 0.00 2.90
374 375 4.174009 CACGTGCAAGCTTACTAGTGTAT 58.826 43.478 0.82 0.00 0.00 2.29
375 376 4.031765 CACGTGCAAGCTTACTAGTGTATG 59.968 45.833 0.82 0.00 0.00 2.39
376 377 4.174009 CGTGCAAGCTTACTAGTGTATGT 58.826 43.478 5.39 0.00 0.00 2.29
377 378 4.265556 CGTGCAAGCTTACTAGTGTATGTC 59.734 45.833 5.39 0.00 0.00 3.06
378 379 5.411781 GTGCAAGCTTACTAGTGTATGTCT 58.588 41.667 5.39 0.00 0.00 3.41
379 380 6.561614 GTGCAAGCTTACTAGTGTATGTCTA 58.438 40.000 5.39 0.00 0.00 2.59
380 381 6.693545 GTGCAAGCTTACTAGTGTATGTCTAG 59.306 42.308 5.39 0.00 40.23 2.43
381 382 6.602009 TGCAAGCTTACTAGTGTATGTCTAGA 59.398 38.462 5.39 0.00 38.45 2.43
382 383 6.913673 GCAAGCTTACTAGTGTATGTCTAGAC 59.086 42.308 16.32 16.32 38.45 2.59
383 384 7.415318 GCAAGCTTACTAGTGTATGTCTAGACA 60.415 40.741 27.07 27.07 46.44 3.41
384 385 7.795482 AGCTTACTAGTGTATGTCTAGACAG 57.205 40.000 28.29 16.22 45.48 3.51
385 386 7.566569 AGCTTACTAGTGTATGTCTAGACAGA 58.433 38.462 28.29 22.63 45.48 3.41
386 387 8.215050 AGCTTACTAGTGTATGTCTAGACAGAT 58.785 37.037 28.29 16.58 45.48 2.90
387 388 8.286800 GCTTACTAGTGTATGTCTAGACAGATG 58.713 40.741 28.29 16.11 45.48 2.90
388 389 8.678593 TTACTAGTGTATGTCTAGACAGATGG 57.321 38.462 28.29 14.82 45.48 3.51
389 390 6.664714 ACTAGTGTATGTCTAGACAGATGGT 58.335 40.000 28.29 15.41 45.48 3.55
390 391 5.843673 AGTGTATGTCTAGACAGATGGTG 57.156 43.478 28.29 0.00 45.48 4.17
391 392 4.646945 AGTGTATGTCTAGACAGATGGTGG 59.353 45.833 28.29 0.00 45.48 4.61
392 393 4.645136 GTGTATGTCTAGACAGATGGTGGA 59.355 45.833 28.29 4.05 45.48 4.02
393 394 4.889995 TGTATGTCTAGACAGATGGTGGAG 59.110 45.833 28.29 0.00 45.48 3.86
394 395 3.458044 TGTCTAGACAGATGGTGGAGT 57.542 47.619 21.74 0.00 36.21 3.85
395 396 3.092301 TGTCTAGACAGATGGTGGAGTG 58.908 50.000 21.74 0.00 36.21 3.51
396 397 2.428890 GTCTAGACAGATGGTGGAGTGG 59.571 54.545 18.20 0.00 32.09 4.00
397 398 2.043115 TCTAGACAGATGGTGGAGTGGT 59.957 50.000 0.00 0.00 0.00 4.16
398 399 1.734655 AGACAGATGGTGGAGTGGTT 58.265 50.000 0.00 0.00 0.00 3.67
399 400 2.057922 AGACAGATGGTGGAGTGGTTT 58.942 47.619 0.00 0.00 0.00 3.27
400 401 2.039084 AGACAGATGGTGGAGTGGTTTC 59.961 50.000 0.00 0.00 0.00 2.78
401 402 1.073923 ACAGATGGTGGAGTGGTTTCC 59.926 52.381 0.00 0.00 37.77 3.13
402 403 1.073763 CAGATGGTGGAGTGGTTTCCA 59.926 52.381 0.00 0.00 44.84 3.53
414 415 0.476771 GGTTTCCACCACCTTCTGGA 59.523 55.000 0.00 0.00 43.95 3.86
415 416 1.075536 GGTTTCCACCACCTTCTGGAT 59.924 52.381 0.00 0.00 43.95 3.41
416 417 2.490902 GGTTTCCACCACCTTCTGGATT 60.491 50.000 0.00 0.00 43.95 3.01
417 418 2.558359 GTTTCCACCACCTTCTGGATTG 59.442 50.000 0.00 0.00 43.95 2.67
418 419 0.698238 TCCACCACCTTCTGGATTGG 59.302 55.000 0.00 0.00 43.95 3.16
429 430 1.008206 TCTGGATTGGGGGAAATTGGG 59.992 52.381 0.00 0.00 0.00 4.12
434 435 2.805290 TTGGGGGAAATTGGGTTTCT 57.195 45.000 1.17 0.00 44.54 2.52
482 484 1.468127 CAACTGCAATATCACGCCACA 59.532 47.619 0.00 0.00 0.00 4.17
530 546 0.968405 TTTGCTCCCATGGTTTCAGC 59.032 50.000 11.73 12.48 0.00 4.26
558 578 4.279671 CAGGCCTATCTGTATTCTCGTCTT 59.720 45.833 3.98 0.00 0.00 3.01
601 621 4.414852 CCAGTTTTGACTATGGAAATGCG 58.585 43.478 0.00 0.00 34.60 4.73
684 704 2.280592 GACAACGTTGACCCGGCT 60.281 61.111 33.66 10.25 0.00 5.52
687 707 3.284449 AACGTTGACCCGGCTTGC 61.284 61.111 0.00 0.00 0.00 4.01
817 837 1.749258 GGGTCGCCCACAGAAATCC 60.749 63.158 9.72 0.00 44.65 3.01
822 842 1.084370 CGCCCACAGAAATCCGTCTC 61.084 60.000 0.00 0.00 0.00 3.36
848 877 4.827087 CCGTCGCAGCCTGCTGAT 62.827 66.667 22.64 0.00 46.30 2.90
850 879 2.894387 GTCGCAGCCTGCTGATCC 60.894 66.667 22.64 4.39 46.30 3.36
851 880 3.079478 TCGCAGCCTGCTGATCCT 61.079 61.111 22.64 0.00 46.30 3.24
852 881 2.895865 CGCAGCCTGCTGATCCTG 60.896 66.667 22.64 2.84 46.30 3.86
853 882 3.210528 GCAGCCTGCTGATCCTGC 61.211 66.667 22.64 12.36 46.30 4.85
854 883 2.590645 CAGCCTGCTGATCCTGCT 59.409 61.111 13.85 0.00 46.30 4.24
856 885 2.588314 GCCTGCTGATCCTGCTCG 60.588 66.667 8.84 1.45 0.00 5.03
857 886 3.086391 GCCTGCTGATCCTGCTCGA 62.086 63.158 8.84 0.00 0.00 4.04
858 887 1.747145 CCTGCTGATCCTGCTCGAT 59.253 57.895 8.84 0.00 0.00 3.59
861 890 2.021039 GCTGATCCTGCTCGATCGC 61.021 63.158 11.09 0.00 41.39 4.58
862 891 1.372748 CTGATCCTGCTCGATCGCC 60.373 63.158 11.09 4.37 41.39 5.54
863 892 1.804396 CTGATCCTGCTCGATCGCCT 61.804 60.000 11.09 0.00 41.39 5.52
864 893 1.080839 GATCCTGCTCGATCGCCTC 60.081 63.158 11.09 2.13 29.96 4.70
872 901 4.193334 CGATCGCCTCGCTGGACA 62.193 66.667 0.26 0.00 41.14 4.02
873 902 2.583593 GATCGCCTCGCTGGACAC 60.584 66.667 0.00 0.00 38.35 3.67
875 904 2.945398 GATCGCCTCGCTGGACACTC 62.945 65.000 0.00 0.00 38.35 3.51
876 905 4.056125 CGCCTCGCTGGACACTCA 62.056 66.667 0.00 0.00 38.35 3.41
877 906 2.433318 GCCTCGCTGGACACTCAC 60.433 66.667 0.00 0.00 38.35 3.51
932 965 1.547372 CAAACCATTGGCAGGGAAGAG 59.453 52.381 13.45 0.00 32.69 2.85
936 969 1.272648 CCATTGGCAGGGAAGAGGAAA 60.273 52.381 1.30 0.00 0.00 3.13
937 970 2.097825 CATTGGCAGGGAAGAGGAAAG 58.902 52.381 0.00 0.00 0.00 2.62
966 1021 5.807520 GCGTCTTTCATCAGAGTTTAGATCA 59.192 40.000 0.00 0.00 0.00 2.92
1046 1104 3.788434 ACGTGCAAGATCGTTTTACTG 57.212 42.857 6.65 0.00 36.93 2.74
1048 1106 3.994392 ACGTGCAAGATCGTTTTACTGAT 59.006 39.130 6.65 0.00 36.93 2.90
1052 1110 5.904080 GTGCAAGATCGTTTTACTGATATGC 59.096 40.000 0.00 0.00 37.71 3.14
1059 1152 9.507280 AGATCGTTTTACTGATATGCAATTTTG 57.493 29.630 0.00 0.00 0.00 2.44
1060 1153 9.289303 GATCGTTTTACTGATATGCAATTTTGT 57.711 29.630 0.00 0.00 0.00 2.83
1061 1154 8.667987 TCGTTTTACTGATATGCAATTTTGTC 57.332 30.769 0.00 0.00 0.00 3.18
1081 1174 2.168106 TCATGCACAGTTTTGCCTTGTT 59.832 40.909 0.00 0.00 42.25 2.83
1085 1178 4.764172 TGCACAGTTTTGCCTTGTTAATT 58.236 34.783 0.00 0.00 42.25 1.40
1087 1180 5.982516 TGCACAGTTTTGCCTTGTTAATTAG 59.017 36.000 0.00 0.00 42.25 1.73
1090 1183 7.114388 GCACAGTTTTGCCTTGTTAATTAGTAC 59.886 37.037 0.00 0.00 36.42 2.73
1091 1184 7.322699 CACAGTTTTGCCTTGTTAATTAGTACG 59.677 37.037 0.00 0.00 0.00 3.67
1092 1185 7.227116 ACAGTTTTGCCTTGTTAATTAGTACGA 59.773 33.333 0.00 0.00 0.00 3.43
1093 1186 7.744715 CAGTTTTGCCTTGTTAATTAGTACGAG 59.255 37.037 0.00 0.00 0.00 4.18
1094 1187 7.443272 AGTTTTGCCTTGTTAATTAGTACGAGT 59.557 33.333 0.00 0.00 0.00 4.18
1095 1188 8.711457 GTTTTGCCTTGTTAATTAGTACGAGTA 58.289 33.333 0.00 0.00 0.00 2.59
1096 1189 7.816945 TTGCCTTGTTAATTAGTACGAGTAC 57.183 36.000 5.32 5.32 36.35 2.73
1115 1208 7.173562 ACGAGTACTCTATAGTATTGCTTCAGG 59.826 40.741 20.34 1.28 40.30 3.86
1134 1228 6.012658 TCAGGATGTTTTTGTATCTTGCAC 57.987 37.500 0.00 0.00 37.40 4.57
1140 1234 2.308347 TTTGTATCTTGCACGCGTTG 57.692 45.000 10.22 6.68 0.00 4.10
1146 1240 3.822594 ATCTTGCACGCGTTGATTAAA 57.177 38.095 10.22 0.00 0.00 1.52
1155 1249 2.286418 CGCGTTGATTAAAGATCCTGGC 60.286 50.000 0.00 0.00 0.00 4.85
1315 1420 3.699067 GATGCATGCATGTGGTTAACTC 58.301 45.455 36.73 15.85 36.70 3.01
1328 1433 5.296780 TGTGGTTAACTCTTTTGCTCTCTTG 59.703 40.000 5.42 0.00 0.00 3.02
1329 1434 5.297029 GTGGTTAACTCTTTTGCTCTCTTGT 59.703 40.000 5.42 0.00 0.00 3.16
1330 1435 5.885912 TGGTTAACTCTTTTGCTCTCTTGTT 59.114 36.000 5.42 0.00 0.00 2.83
1331 1436 6.377146 TGGTTAACTCTTTTGCTCTCTTGTTT 59.623 34.615 5.42 0.00 0.00 2.83
1332 1437 7.093945 TGGTTAACTCTTTTGCTCTCTTGTTTT 60.094 33.333 5.42 0.00 0.00 2.43
1495 1605 0.955428 GGTTCAGCGCCAAGTGATGA 60.955 55.000 2.29 0.00 36.67 2.92
1496 1606 1.089920 GTTCAGCGCCAAGTGATGAT 58.910 50.000 2.29 0.00 38.25 2.45
1497 1607 1.089112 TTCAGCGCCAAGTGATGATG 58.911 50.000 2.29 0.00 38.25 3.07
1498 1608 0.745486 TCAGCGCCAAGTGATGATGG 60.745 55.000 2.29 0.00 33.50 3.51
1500 1610 1.750399 GCGCCAAGTGATGATGGGT 60.750 57.895 0.00 0.00 0.00 4.51
1501 1611 1.315257 GCGCCAAGTGATGATGGGTT 61.315 55.000 0.00 0.00 0.00 4.11
1502 1612 0.734889 CGCCAAGTGATGATGGGTTC 59.265 55.000 0.00 0.00 0.00 3.62
1503 1613 1.106285 GCCAAGTGATGATGGGTTCC 58.894 55.000 0.00 0.00 0.00 3.62
1565 1682 2.094649 TGTGTCGCGTGTGGATATGTTA 60.095 45.455 5.77 0.00 0.00 2.41
1593 1714 1.141019 TCATTAGCGTGGAGGCGTC 59.859 57.895 0.00 0.00 38.18 5.19
1608 1729 1.338769 GGCGTCCCATGGATATGTACC 60.339 57.143 15.22 1.15 32.73 3.34
1638 1762 5.170748 GCCTCAAGTGAATAAATGGTTTGG 58.829 41.667 0.00 0.00 0.00 3.28
1640 1766 5.146010 TCAAGTGAATAAATGGTTTGGGC 57.854 39.130 0.00 0.00 0.00 5.36
1666 1792 8.977505 CAAATATAAGAGCAACTCTAGAAGAGC 58.022 37.037 3.85 0.00 46.12 4.09
1668 1794 4.454728 AAGAGCAACTCTAGAAGAGCTG 57.545 45.455 14.89 3.66 46.12 4.24
1669 1795 3.696045 AGAGCAACTCTAGAAGAGCTGA 58.304 45.455 14.89 0.00 46.12 4.26
1670 1796 4.085733 AGAGCAACTCTAGAAGAGCTGAA 58.914 43.478 14.89 0.00 46.12 3.02
1671 1797 4.082245 AGAGCAACTCTAGAAGAGCTGAAC 60.082 45.833 14.89 4.55 46.12 3.18
1672 1798 3.576118 AGCAACTCTAGAAGAGCTGAACA 59.424 43.478 10.69 0.00 46.12 3.18
1673 1799 4.039730 AGCAACTCTAGAAGAGCTGAACAA 59.960 41.667 10.69 0.00 46.12 2.83
1692 1818 5.895636 ACAAGCCATAATTTGAATCGTGA 57.104 34.783 0.00 0.00 0.00 4.35
1693 1819 5.640732 ACAAGCCATAATTTGAATCGTGAC 58.359 37.500 0.00 0.00 0.00 3.67
1710 1836 0.247736 GACCCGCTGGCTATATGGAG 59.752 60.000 0.00 0.00 33.59 3.86
1715 1841 1.294659 GCTGGCTATATGGAGTGCGC 61.295 60.000 0.00 0.00 0.00 6.09
1725 1851 6.019479 GCTATATGGAGTGCGCTTCATAATAC 60.019 42.308 27.77 17.27 44.07 1.89
1733 1859 5.065218 AGTGCGCTTCATAATACTTTGAAGG 59.935 40.000 9.73 6.02 45.74 3.46
1734 1860 4.201910 TGCGCTTCATAATACTTTGAAGGC 60.202 41.667 9.73 13.56 45.74 4.35
1735 1861 4.035675 GCGCTTCATAATACTTTGAAGGCT 59.964 41.667 0.00 0.00 45.74 4.58
1736 1862 5.505286 CGCTTCATAATACTTTGAAGGCTG 58.495 41.667 12.94 0.00 45.74 4.85
1738 1864 6.490534 GCTTCATAATACTTTGAAGGCTGAC 58.509 40.000 12.94 0.00 45.74 3.51
1739 1865 6.094048 GCTTCATAATACTTTGAAGGCTGACA 59.906 38.462 12.94 0.00 45.74 3.58
1740 1866 7.615582 TTCATAATACTTTGAAGGCTGACAG 57.384 36.000 0.00 0.00 0.00 3.51
1741 1867 6.115446 TCATAATACTTTGAAGGCTGACAGG 58.885 40.000 4.26 0.00 0.00 4.00
1742 1868 2.185004 TACTTTGAAGGCTGACAGGC 57.815 50.000 20.87 20.87 41.73 4.85
1751 1877 4.383861 CTGACAGGCCTCTGCGCA 62.384 66.667 10.98 10.98 44.59 6.09
1764 1894 3.543494 CCTCTGCGCAAAATACAAAATCG 59.457 43.478 13.05 0.00 0.00 3.34
1767 1897 1.007524 GCGCAAAATACAAAATCGCCG 60.008 47.619 0.30 0.00 35.71 6.46
1782 1912 2.514592 CCGAACGGCAGCCATCAT 60.515 61.111 13.30 0.00 0.00 2.45
1783 1913 2.537560 CCGAACGGCAGCCATCATC 61.538 63.158 13.30 2.46 0.00 2.92
1784 1914 2.874694 CGAACGGCAGCCATCATCG 61.875 63.158 13.30 11.20 0.00 3.84
1785 1915 1.815421 GAACGGCAGCCATCATCGT 60.815 57.895 13.30 0.00 35.48 3.73
1786 1916 1.766143 GAACGGCAGCCATCATCGTC 61.766 60.000 13.30 0.00 33.34 4.20
1794 1924 4.202050 GGCAGCCATCATCGTCTTTTTATT 60.202 41.667 6.55 0.00 0.00 1.40
1802 1932 7.414429 CCATCATCGTCTTTTTATTTGCTCTCA 60.414 37.037 0.00 0.00 0.00 3.27
1824 1954 9.630098 TCTCATGATTTTAGTTTCAATTCAAGC 57.370 29.630 0.00 0.00 0.00 4.01
1851 1981 3.608316 TTTCTTTTGCAGCCAAACAGT 57.392 38.095 0.00 0.00 40.45 3.55
1864 1994 6.392354 CAGCCAAACAGTTCATAATTGTCAT 58.608 36.000 0.00 0.00 30.39 3.06
1869 1999 8.702438 CCAAACAGTTCATAATTGTCATCAAAC 58.298 33.333 0.00 0.00 37.11 2.93
1870 2000 9.247126 CAAACAGTTCATAATTGTCATCAAACA 57.753 29.630 0.00 0.00 37.11 2.83
1913 2043 8.629158 CAACTACTATATGCTATTGGCCAAAAA 58.371 33.333 24.71 13.03 40.92 1.94
1918 2048 3.502191 TGCTATTGGCCAAAAATCGTC 57.498 42.857 24.71 8.13 40.92 4.20
1919 2049 2.159448 TGCTATTGGCCAAAAATCGTCG 60.159 45.455 24.71 1.64 40.92 5.12
1920 2050 2.450160 CTATTGGCCAAAAATCGTCGC 58.550 47.619 24.71 0.00 0.00 5.19
1937 2067 9.735646 AAATCGTCGCATTACATATATTTTACG 57.264 29.630 0.00 0.00 0.00 3.18
1938 2068 8.677871 ATCGTCGCATTACATATATTTTACGA 57.322 30.769 0.00 0.00 38.61 3.43
1939 2069 7.931493 TCGTCGCATTACATATATTTTACGAC 58.069 34.615 0.00 0.00 41.84 4.34
1940 2070 7.804600 TCGTCGCATTACATATATTTTACGACT 59.195 33.333 15.14 0.00 42.75 4.18
1980 2110 7.041107 AGCGGCATTTTCAAAATATACAATGT 58.959 30.769 1.45 0.00 0.00 2.71
2012 2142 5.246145 ACATCGCAAACTACTACTACCTC 57.754 43.478 0.00 0.00 0.00 3.85
2014 2144 2.679837 TCGCAAACTACTACTACCTCCG 59.320 50.000 0.00 0.00 0.00 4.63
2024 2154 3.178569 CTACCTCCGCTACGCCGTC 62.179 68.421 0.00 0.00 0.00 4.79
2041 2171 3.771160 CTCCACCGCCGCCTAGTT 61.771 66.667 0.00 0.00 0.00 2.24
2042 2172 4.077184 TCCACCGCCGCCTAGTTG 62.077 66.667 0.00 0.00 0.00 3.16
2072 3948 0.179089 CATCCTCCTCGCCTGACAAG 60.179 60.000 0.00 0.00 0.00 3.16
2078 3954 1.817099 CTCGCCTGACAAGCCATCC 60.817 63.158 0.00 0.00 0.00 3.51
2108 3984 1.020333 ACTCGTCGTTCTCCTCCTCG 61.020 60.000 0.00 0.00 0.00 4.63
2139 4028 2.484594 GCTATTGCTCCTCCTCTTGGTC 60.485 54.545 0.00 0.00 36.03 4.02
2186 4075 6.256819 TCATGGGTGTTTATTCCAATAACCA 58.743 36.000 0.00 0.00 33.90 3.67
2194 4083 8.190784 GTGTTTATTCCAATAACCATTCCTCTG 58.809 37.037 0.00 0.00 31.03 3.35
2201 4090 7.509546 TCCAATAACCATTCCTCTGTAATCTC 58.490 38.462 0.00 0.00 0.00 2.75
2240 4129 6.490040 ACTGGTTCAAAGTATGTAGCATGTTT 59.510 34.615 0.00 0.00 0.00 2.83
2249 4138 9.463443 AAAGTATGTAGCATGTTTGAAAACTTC 57.537 29.630 7.39 0.00 39.59 3.01
2273 4162 8.908786 TCAGAAATTGTAGATTCCATATCCAC 57.091 34.615 0.00 0.00 0.00 4.02
2442 4335 2.680577 CCTTCACAAATCTTGCTTGGC 58.319 47.619 0.00 0.00 0.00 4.52
2460 4353 2.375174 TGGCCTCCTGTATGAGTTGTTT 59.625 45.455 3.32 0.00 0.00 2.83
2463 4356 3.437049 GCCTCCTGTATGAGTTGTTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
2484 4377 4.409247 GTCACCCCCAAGTATAAGAGTGAT 59.591 45.833 0.00 0.00 35.65 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.956640 GAGATGGTTAGATCAATGGATAATTCT 57.043 33.333 0.00 0.00 32.67 2.40
3 4 9.956640 AGAGATGGTTAGATCAATGGATAATTC 57.043 33.333 0.00 0.00 32.67 2.17
8 9 9.956640 GATTAAGAGATGGTTAGATCAATGGAT 57.043 33.333 0.00 0.00 36.13 3.41
9 10 9.163894 AGATTAAGAGATGGTTAGATCAATGGA 57.836 33.333 0.00 0.00 0.00 3.41
10 11 9.790344 AAGATTAAGAGATGGTTAGATCAATGG 57.210 33.333 0.00 0.00 0.00 3.16
38 39 9.466497 AGCAATGGATAACTAAAATCTGAGAAA 57.534 29.630 0.00 0.00 0.00 2.52
39 40 9.466497 AAGCAATGGATAACTAAAATCTGAGAA 57.534 29.630 0.00 0.00 0.00 2.87
68 69 9.354673 CCCTACAATTGGTCTTAATATCATTGT 57.645 33.333 10.83 0.00 34.61 2.71
69 70 9.573166 TCCCTACAATTGGTCTTAATATCATTG 57.427 33.333 10.83 0.00 0.00 2.82
71 72 9.745018 CATCCCTACAATTGGTCTTAATATCAT 57.255 33.333 10.83 0.00 0.00 2.45
72 73 7.665559 GCATCCCTACAATTGGTCTTAATATCA 59.334 37.037 10.83 0.00 0.00 2.15
73 74 7.665559 TGCATCCCTACAATTGGTCTTAATATC 59.334 37.037 10.83 0.00 0.00 1.63
74 75 7.526041 TGCATCCCTACAATTGGTCTTAATAT 58.474 34.615 10.83 0.00 0.00 1.28
75 76 6.905736 TGCATCCCTACAATTGGTCTTAATA 58.094 36.000 10.83 0.00 0.00 0.98
76 77 5.765510 TGCATCCCTACAATTGGTCTTAAT 58.234 37.500 10.83 0.00 0.00 1.40
77 78 5.186256 TGCATCCCTACAATTGGTCTTAA 57.814 39.130 10.83 0.00 0.00 1.85
78 79 4.853468 TGCATCCCTACAATTGGTCTTA 57.147 40.909 10.83 0.00 0.00 2.10
79 80 3.737559 TGCATCCCTACAATTGGTCTT 57.262 42.857 10.83 0.00 0.00 3.01
80 81 3.959495 ATGCATCCCTACAATTGGTCT 57.041 42.857 10.83 0.00 0.00 3.85
81 82 4.702131 GGATATGCATCCCTACAATTGGTC 59.298 45.833 10.83 0.00 44.55 4.02
82 83 4.666512 GGATATGCATCCCTACAATTGGT 58.333 43.478 10.83 0.00 44.55 3.67
87 88 8.625099 TCAGTATGTGGATATGCATCCCTACAA 61.625 40.741 17.03 7.85 42.38 2.41
88 89 7.206902 TCAGTATGTGGATATGCATCCCTACA 61.207 42.308 15.96 15.96 42.38 2.74
89 90 5.187772 TCAGTATGTGGATATGCATCCCTAC 59.812 44.000 0.19 5.12 42.38 3.18
90 91 5.341169 TCAGTATGTGGATATGCATCCCTA 58.659 41.667 0.19 0.53 42.38 3.53
91 92 4.170449 TCAGTATGTGGATATGCATCCCT 58.830 43.478 0.19 0.00 42.38 4.20
92 93 4.558226 TCAGTATGTGGATATGCATCCC 57.442 45.455 0.19 6.80 42.38 3.85
93 94 5.180117 GTGTTCAGTATGTGGATATGCATCC 59.820 44.000 0.19 0.00 42.98 3.51
94 95 5.759763 TGTGTTCAGTATGTGGATATGCATC 59.240 40.000 0.19 0.00 37.40 3.91
95 96 5.683681 TGTGTTCAGTATGTGGATATGCAT 58.316 37.500 3.79 3.79 37.40 3.96
96 97 5.096443 TGTGTTCAGTATGTGGATATGCA 57.904 39.130 0.00 0.00 37.40 3.96
97 98 6.432936 CATTGTGTTCAGTATGTGGATATGC 58.567 40.000 0.00 0.00 37.40 3.14
98 99 6.767423 TCCATTGTGTTCAGTATGTGGATATG 59.233 38.462 0.00 0.00 37.40 1.78
99 100 6.899089 TCCATTGTGTTCAGTATGTGGATAT 58.101 36.000 0.00 0.00 37.40 1.63
100 101 6.306643 TCCATTGTGTTCAGTATGTGGATA 57.693 37.500 0.00 0.00 37.40 2.59
101 102 5.178096 TCCATTGTGTTCAGTATGTGGAT 57.822 39.130 0.00 0.00 37.40 3.41
102 103 4.632327 TCCATTGTGTTCAGTATGTGGA 57.368 40.909 0.00 0.00 37.40 4.02
103 104 4.156556 CCTTCCATTGTGTTCAGTATGTGG 59.843 45.833 0.00 0.00 37.40 4.17
104 105 4.761739 ACCTTCCATTGTGTTCAGTATGTG 59.238 41.667 0.00 0.00 37.40 3.21
105 106 4.985538 ACCTTCCATTGTGTTCAGTATGT 58.014 39.130 0.00 0.00 37.40 2.29
106 107 5.702865 CAACCTTCCATTGTGTTCAGTATG 58.297 41.667 0.00 0.00 37.54 2.39
107 108 4.218417 GCAACCTTCCATTGTGTTCAGTAT 59.782 41.667 0.00 0.00 0.00 2.12
108 109 3.568007 GCAACCTTCCATTGTGTTCAGTA 59.432 43.478 0.00 0.00 0.00 2.74
109 110 2.362077 GCAACCTTCCATTGTGTTCAGT 59.638 45.455 0.00 0.00 0.00 3.41
110 111 2.624838 AGCAACCTTCCATTGTGTTCAG 59.375 45.455 0.00 0.00 0.00 3.02
111 112 2.665165 AGCAACCTTCCATTGTGTTCA 58.335 42.857 0.00 0.00 0.00 3.18
112 113 3.733443 AAGCAACCTTCCATTGTGTTC 57.267 42.857 0.00 0.00 0.00 3.18
113 114 4.081198 TGAAAAGCAACCTTCCATTGTGTT 60.081 37.500 0.00 0.00 0.00 3.32
114 115 3.450457 TGAAAAGCAACCTTCCATTGTGT 59.550 39.130 0.00 0.00 0.00 3.72
115 116 4.057406 TGAAAAGCAACCTTCCATTGTG 57.943 40.909 0.00 0.00 0.00 3.33
116 117 4.751767 TTGAAAAGCAACCTTCCATTGT 57.248 36.364 0.00 0.00 0.00 2.71
117 118 7.910441 ATTATTGAAAAGCAACCTTCCATTG 57.090 32.000 0.00 0.00 39.78 2.82
145 146 8.479689 GGTTCTAAAGGAATAAGAGAGCTAGTT 58.520 37.037 0.00 0.00 36.24 2.24
146 147 7.842236 AGGTTCTAAAGGAATAAGAGAGCTAGT 59.158 37.037 0.00 0.00 36.24 2.57
147 148 8.245195 AGGTTCTAAAGGAATAAGAGAGCTAG 57.755 38.462 0.00 0.00 36.24 3.42
148 149 9.884814 ATAGGTTCTAAAGGAATAAGAGAGCTA 57.115 33.333 0.00 0.00 36.24 3.32
149 150 8.791298 ATAGGTTCTAAAGGAATAAGAGAGCT 57.209 34.615 0.00 0.00 36.24 4.09
150 151 8.643324 TGATAGGTTCTAAAGGAATAAGAGAGC 58.357 37.037 0.00 0.00 36.24 4.09
157 158 9.457436 GGTGTTTTGATAGGTTCTAAAGGAATA 57.543 33.333 0.00 0.00 36.24 1.75
158 159 7.120726 CGGTGTTTTGATAGGTTCTAAAGGAAT 59.879 37.037 0.00 0.00 36.24 3.01
159 160 6.428771 CGGTGTTTTGATAGGTTCTAAAGGAA 59.571 38.462 0.00 0.00 31.19 3.36
160 161 5.935789 CGGTGTTTTGATAGGTTCTAAAGGA 59.064 40.000 0.00 0.00 31.19 3.36
161 162 5.935789 TCGGTGTTTTGATAGGTTCTAAAGG 59.064 40.000 0.00 0.00 31.19 3.11
162 163 7.041644 TGTTCGGTGTTTTGATAGGTTCTAAAG 60.042 37.037 0.00 0.00 31.19 1.85
163 164 6.766944 TGTTCGGTGTTTTGATAGGTTCTAAA 59.233 34.615 0.00 0.00 0.00 1.85
164 165 6.289834 TGTTCGGTGTTTTGATAGGTTCTAA 58.710 36.000 0.00 0.00 0.00 2.10
165 166 5.856156 TGTTCGGTGTTTTGATAGGTTCTA 58.144 37.500 0.00 0.00 0.00 2.10
166 167 4.710324 TGTTCGGTGTTTTGATAGGTTCT 58.290 39.130 0.00 0.00 0.00 3.01
167 168 5.427036 TTGTTCGGTGTTTTGATAGGTTC 57.573 39.130 0.00 0.00 0.00 3.62
168 169 5.838531 TTTGTTCGGTGTTTTGATAGGTT 57.161 34.783 0.00 0.00 0.00 3.50
169 170 6.399639 AATTTGTTCGGTGTTTTGATAGGT 57.600 33.333 0.00 0.00 0.00 3.08
170 171 8.804688 TTTAATTTGTTCGGTGTTTTGATAGG 57.195 30.769 0.00 0.00 0.00 2.57
181 182 9.862371 TGCATATGTATTTTTAATTTGTTCGGT 57.138 25.926 4.29 0.00 0.00 4.69
192 193 9.579768 GGTCATGTTGTTGCATATGTATTTTTA 57.420 29.630 4.29 0.00 0.00 1.52
193 194 8.093307 TGGTCATGTTGTTGCATATGTATTTTT 58.907 29.630 4.29 0.00 0.00 1.94
194 195 7.545265 GTGGTCATGTTGTTGCATATGTATTTT 59.455 33.333 4.29 0.00 0.00 1.82
195 196 7.035004 GTGGTCATGTTGTTGCATATGTATTT 58.965 34.615 4.29 0.00 0.00 1.40
196 197 6.152492 TGTGGTCATGTTGTTGCATATGTATT 59.848 34.615 4.29 0.00 0.00 1.89
197 198 5.651576 TGTGGTCATGTTGTTGCATATGTAT 59.348 36.000 4.29 0.00 0.00 2.29
198 199 5.006386 TGTGGTCATGTTGTTGCATATGTA 58.994 37.500 4.29 0.00 0.00 2.29
199 200 3.825585 TGTGGTCATGTTGTTGCATATGT 59.174 39.130 4.29 0.00 0.00 2.29
200 201 4.437772 TGTGGTCATGTTGTTGCATATG 57.562 40.909 0.00 0.00 0.00 1.78
201 202 5.185442 TCATTGTGGTCATGTTGTTGCATAT 59.815 36.000 0.00 0.00 0.00 1.78
202 203 4.522022 TCATTGTGGTCATGTTGTTGCATA 59.478 37.500 0.00 0.00 0.00 3.14
203 204 3.321396 TCATTGTGGTCATGTTGTTGCAT 59.679 39.130 0.00 0.00 0.00 3.96
204 205 2.692041 TCATTGTGGTCATGTTGTTGCA 59.308 40.909 0.00 0.00 0.00 4.08
205 206 3.052036 GTCATTGTGGTCATGTTGTTGC 58.948 45.455 0.00 0.00 0.00 4.17
206 207 3.243035 ACGTCATTGTGGTCATGTTGTTG 60.243 43.478 0.00 0.00 0.00 3.33
207 208 2.948979 ACGTCATTGTGGTCATGTTGTT 59.051 40.909 0.00 0.00 0.00 2.83
208 209 2.548057 GACGTCATTGTGGTCATGTTGT 59.452 45.455 11.55 0.00 0.00 3.32
209 210 2.807967 AGACGTCATTGTGGTCATGTTG 59.192 45.455 19.50 0.00 33.18 3.33
210 211 3.067106 GAGACGTCATTGTGGTCATGTT 58.933 45.455 19.50 0.00 33.18 2.71
211 212 2.037121 TGAGACGTCATTGTGGTCATGT 59.963 45.455 19.50 0.00 33.18 3.21
212 213 2.413112 GTGAGACGTCATTGTGGTCATG 59.587 50.000 19.50 0.00 34.36 3.07
213 214 2.300152 AGTGAGACGTCATTGTGGTCAT 59.700 45.455 19.50 0.00 34.36 3.06
214 215 1.686587 AGTGAGACGTCATTGTGGTCA 59.313 47.619 19.50 7.84 34.36 4.02
215 216 2.440539 AGTGAGACGTCATTGTGGTC 57.559 50.000 19.50 5.01 34.36 4.02
216 217 2.910688 AAGTGAGACGTCATTGTGGT 57.089 45.000 19.50 0.00 34.36 4.16
217 218 3.303990 CCAAAAGTGAGACGTCATTGTGG 60.304 47.826 19.50 16.08 34.36 4.17
218 219 3.559655 TCCAAAAGTGAGACGTCATTGTG 59.440 43.478 19.50 11.38 34.36 3.33
219 220 3.804036 TCCAAAAGTGAGACGTCATTGT 58.196 40.909 19.50 0.00 34.36 2.71
220 221 4.511454 TCTTCCAAAAGTGAGACGTCATTG 59.489 41.667 19.50 11.71 34.36 2.82
221 222 4.703897 TCTTCCAAAAGTGAGACGTCATT 58.296 39.130 19.50 3.93 34.36 2.57
222 223 4.336889 TCTTCCAAAAGTGAGACGTCAT 57.663 40.909 19.50 2.45 34.36 3.06
223 224 3.812156 TCTTCCAAAAGTGAGACGTCA 57.188 42.857 19.50 0.00 33.95 4.35
224 225 3.247886 GGTTCTTCCAAAAGTGAGACGTC 59.752 47.826 7.70 7.70 35.97 4.34
225 226 3.203716 GGTTCTTCCAAAAGTGAGACGT 58.796 45.455 0.00 0.00 35.97 4.34
226 227 2.221055 CGGTTCTTCCAAAAGTGAGACG 59.779 50.000 0.00 0.00 35.57 4.18
227 228 2.031944 GCGGTTCTTCCAAAAGTGAGAC 60.032 50.000 0.00 0.00 35.57 3.36
228 229 2.158813 AGCGGTTCTTCCAAAAGTGAGA 60.159 45.455 0.00 0.00 35.57 3.27
229 230 2.222027 AGCGGTTCTTCCAAAAGTGAG 58.778 47.619 0.00 0.00 35.57 3.51
230 231 2.341846 AGCGGTTCTTCCAAAAGTGA 57.658 45.000 0.00 0.00 35.57 3.41
231 232 3.436700 AAAGCGGTTCTTCCAAAAGTG 57.563 42.857 0.00 0.00 32.88 3.16
232 233 4.036380 CACTAAAGCGGTTCTTCCAAAAGT 59.964 41.667 0.00 0.00 32.88 2.66
233 234 4.274950 TCACTAAAGCGGTTCTTCCAAAAG 59.725 41.667 0.00 0.00 32.88 2.27
234 235 4.035909 GTCACTAAAGCGGTTCTTCCAAAA 59.964 41.667 0.00 0.00 32.88 2.44
235 236 3.562557 GTCACTAAAGCGGTTCTTCCAAA 59.437 43.478 0.00 0.00 32.88 3.28
236 237 3.135994 GTCACTAAAGCGGTTCTTCCAA 58.864 45.455 0.00 0.00 32.88 3.53
237 238 2.103432 TGTCACTAAAGCGGTTCTTCCA 59.897 45.455 0.00 0.00 32.88 3.53
238 239 2.762745 TGTCACTAAAGCGGTTCTTCC 58.237 47.619 0.00 0.00 32.88 3.46
239 240 3.994392 TGATGTCACTAAAGCGGTTCTTC 59.006 43.478 0.00 0.00 32.88 2.87
240 241 3.746492 GTGATGTCACTAAAGCGGTTCTT 59.254 43.478 0.00 0.00 43.25 2.52
241 242 3.244078 TGTGATGTCACTAAAGCGGTTCT 60.244 43.478 13.71 0.00 46.55 3.01
242 243 3.064207 TGTGATGTCACTAAAGCGGTTC 58.936 45.455 13.71 0.00 46.55 3.62
243 244 3.120321 TGTGATGTCACTAAAGCGGTT 57.880 42.857 13.71 0.00 46.55 4.44
244 245 2.806244 GTTGTGATGTCACTAAAGCGGT 59.194 45.455 13.71 0.00 46.55 5.68
245 246 2.805671 TGTTGTGATGTCACTAAAGCGG 59.194 45.455 13.71 0.00 46.55 5.52
246 247 4.668576 ATGTTGTGATGTCACTAAAGCG 57.331 40.909 13.71 0.00 46.55 4.68
247 248 5.762045 ACAATGTTGTGATGTCACTAAAGC 58.238 37.500 13.71 0.00 46.55 3.51
248 249 7.194607 AGACAATGTTGTGATGTCACTAAAG 57.805 36.000 13.71 3.04 46.55 1.85
249 250 8.846943 ATAGACAATGTTGTGATGTCACTAAA 57.153 30.769 13.71 2.63 46.55 1.85
250 251 8.093927 TGATAGACAATGTTGTGATGTCACTAA 58.906 33.333 13.71 4.76 46.55 2.24
251 252 7.610865 TGATAGACAATGTTGTGATGTCACTA 58.389 34.615 13.71 4.11 46.55 2.74
252 253 6.466812 TGATAGACAATGTTGTGATGTCACT 58.533 36.000 13.71 0.00 46.55 3.41
253 254 6.726258 TGATAGACAATGTTGTGATGTCAC 57.274 37.500 2.65 6.21 44.55 3.67
254 255 7.926674 ATTGATAGACAATGTTGTGATGTCA 57.073 32.000 2.65 3.64 45.99 3.58
308 309 9.460019 TGACCAATAAGATTCACATCATTGTAA 57.540 29.630 0.00 0.00 33.76 2.41
309 310 9.460019 TTGACCAATAAGATTCACATCATTGTA 57.540 29.630 0.00 0.00 33.76 2.41
310 311 7.943079 TGACCAATAAGATTCACATCATTGT 57.057 32.000 0.00 0.00 36.15 2.71
311 312 7.430211 CGTTGACCAATAAGATTCACATCATTG 59.570 37.037 0.00 0.00 0.00 2.82
312 313 7.121168 ACGTTGACCAATAAGATTCACATCATT 59.879 33.333 0.00 0.00 0.00 2.57
313 314 6.599244 ACGTTGACCAATAAGATTCACATCAT 59.401 34.615 0.00 0.00 0.00 2.45
314 315 5.937540 ACGTTGACCAATAAGATTCACATCA 59.062 36.000 0.00 0.00 0.00 3.07
315 316 6.422776 ACGTTGACCAATAAGATTCACATC 57.577 37.500 0.00 0.00 0.00 3.06
316 317 6.817765 AACGTTGACCAATAAGATTCACAT 57.182 33.333 0.00 0.00 0.00 3.21
317 318 6.261158 TCAAACGTTGACCAATAAGATTCACA 59.739 34.615 0.00 0.00 34.08 3.58
318 319 6.664515 TCAAACGTTGACCAATAAGATTCAC 58.335 36.000 0.00 0.00 34.08 3.18
319 320 6.869315 TCAAACGTTGACCAATAAGATTCA 57.131 33.333 0.00 0.00 34.08 2.57
350 351 7.795887 ATACACTAGTAAGCTTGCACGTGCA 62.796 44.000 37.86 37.86 40.71 4.57
351 352 1.126846 CACTAGTAAGCTTGCACGTGC 59.873 52.381 33.11 33.11 42.50 5.34
352 353 2.404215 ACACTAGTAAGCTTGCACGTG 58.596 47.619 24.07 24.07 0.00 4.49
353 354 2.814280 ACACTAGTAAGCTTGCACGT 57.186 45.000 17.21 9.78 0.00 4.49
354 355 4.174009 ACATACACTAGTAAGCTTGCACG 58.826 43.478 17.21 9.15 33.13 5.34
355 356 5.411781 AGACATACACTAGTAAGCTTGCAC 58.588 41.667 17.21 4.19 33.13 4.57
356 357 5.661056 AGACATACACTAGTAAGCTTGCA 57.339 39.130 17.21 2.25 33.13 4.08
357 358 6.913673 GTCTAGACATACACTAGTAAGCTTGC 59.086 42.308 18.20 8.07 38.59 4.01
358 359 7.986562 TGTCTAGACATACACTAGTAAGCTTG 58.013 38.462 21.74 0.00 38.59 4.01
359 360 8.047911 TCTGTCTAGACATACACTAGTAAGCTT 58.952 37.037 25.35 3.48 41.01 3.74
360 361 7.566569 TCTGTCTAGACATACACTAGTAAGCT 58.433 38.462 25.35 0.00 41.01 3.74
361 362 7.789273 TCTGTCTAGACATACACTAGTAAGC 57.211 40.000 25.35 0.00 41.01 3.09
362 363 8.779303 CCATCTGTCTAGACATACACTAGTAAG 58.221 40.741 25.35 9.66 41.01 2.34
363 364 8.272889 ACCATCTGTCTAGACATACACTAGTAA 58.727 37.037 25.35 0.00 41.01 2.24
364 365 7.715686 CACCATCTGTCTAGACATACACTAGTA 59.284 40.741 25.35 0.00 41.01 1.82
365 366 6.544197 CACCATCTGTCTAGACATACACTAGT 59.456 42.308 25.35 13.44 41.01 2.57
366 367 6.016693 CCACCATCTGTCTAGACATACACTAG 60.017 46.154 25.35 12.25 41.01 2.57
367 368 5.828328 CCACCATCTGTCTAGACATACACTA 59.172 44.000 25.35 8.07 41.01 2.74
368 369 4.646945 CCACCATCTGTCTAGACATACACT 59.353 45.833 25.35 6.38 41.01 3.55
369 370 4.645136 TCCACCATCTGTCTAGACATACAC 59.355 45.833 25.35 0.00 41.01 2.90
370 371 4.867086 TCCACCATCTGTCTAGACATACA 58.133 43.478 25.35 13.04 41.01 2.29
371 372 4.890581 ACTCCACCATCTGTCTAGACATAC 59.109 45.833 25.35 0.00 41.01 2.39
372 373 4.889995 CACTCCACCATCTGTCTAGACATA 59.110 45.833 25.35 18.89 41.01 2.29
373 374 3.703556 CACTCCACCATCTGTCTAGACAT 59.296 47.826 25.35 9.62 41.01 3.06
374 375 3.092301 CACTCCACCATCTGTCTAGACA 58.908 50.000 23.80 23.80 39.32 3.41
375 376 2.428890 CCACTCCACCATCTGTCTAGAC 59.571 54.545 16.32 16.32 35.34 2.59
376 377 2.043115 ACCACTCCACCATCTGTCTAGA 59.957 50.000 0.00 0.00 37.35 2.43
377 378 2.461695 ACCACTCCACCATCTGTCTAG 58.538 52.381 0.00 0.00 0.00 2.43
378 379 2.623418 ACCACTCCACCATCTGTCTA 57.377 50.000 0.00 0.00 0.00 2.59
379 380 1.734655 AACCACTCCACCATCTGTCT 58.265 50.000 0.00 0.00 0.00 3.41
380 381 2.427506 GAAACCACTCCACCATCTGTC 58.572 52.381 0.00 0.00 0.00 3.51
381 382 1.073923 GGAAACCACTCCACCATCTGT 59.926 52.381 0.00 0.00 35.36 3.41
382 383 1.073763 TGGAAACCACTCCACCATCTG 59.926 52.381 0.00 0.00 40.71 2.90
383 384 1.444933 TGGAAACCACTCCACCATCT 58.555 50.000 0.00 0.00 40.71 2.90
394 395 0.184933 CCAGAAGGTGGTGGAAACCA 59.815 55.000 0.00 0.00 42.17 3.67
395 396 1.075536 ATCCAGAAGGTGGTGGAAACC 59.924 52.381 0.00 0.00 46.01 3.27
396 397 2.558359 CAATCCAGAAGGTGGTGGAAAC 59.442 50.000 0.00 0.00 46.01 2.78
397 398 2.490718 CCAATCCAGAAGGTGGTGGAAA 60.491 50.000 0.00 0.00 46.01 3.13
398 399 1.075374 CCAATCCAGAAGGTGGTGGAA 59.925 52.381 0.00 0.00 46.01 3.53
404 405 0.704076 TTCCCCCAATCCAGAAGGTG 59.296 55.000 0.00 0.00 35.89 4.00
405 406 1.466858 TTTCCCCCAATCCAGAAGGT 58.533 50.000 0.00 0.00 35.89 3.50
406 407 2.767960 CAATTTCCCCCAATCCAGAAGG 59.232 50.000 0.00 0.00 0.00 3.46
407 408 2.767960 CCAATTTCCCCCAATCCAGAAG 59.232 50.000 0.00 0.00 0.00 2.85
408 409 2.561755 CCCAATTTCCCCCAATCCAGAA 60.562 50.000 0.00 0.00 0.00 3.02
409 410 1.008206 CCCAATTTCCCCCAATCCAGA 59.992 52.381 0.00 0.00 0.00 3.86
410 411 1.273781 ACCCAATTTCCCCCAATCCAG 60.274 52.381 0.00 0.00 0.00 3.86
411 412 0.796255 ACCCAATTTCCCCCAATCCA 59.204 50.000 0.00 0.00 0.00 3.41
412 413 1.965414 AACCCAATTTCCCCCAATCC 58.035 50.000 0.00 0.00 0.00 3.01
413 414 3.181329 AGAAACCCAATTTCCCCCAATC 58.819 45.455 0.00 0.00 46.94 2.67
414 415 3.290039 AGAAACCCAATTTCCCCCAAT 57.710 42.857 0.00 0.00 46.94 3.16
415 416 2.805290 AGAAACCCAATTTCCCCCAA 57.195 45.000 0.00 0.00 46.94 4.12
416 417 2.225420 GGTAGAAACCCAATTTCCCCCA 60.225 50.000 0.00 0.00 46.94 4.96
417 418 2.463752 GGTAGAAACCCAATTTCCCCC 58.536 52.381 0.00 0.00 46.94 5.40
462 464 1.468127 TGTGGCGTGATATTGCAGTTG 59.532 47.619 0.00 0.00 0.00 3.16
463 465 1.468520 GTGTGGCGTGATATTGCAGTT 59.531 47.619 0.00 0.00 0.00 3.16
466 468 1.365368 CCGTGTGGCGTGATATTGCA 61.365 55.000 0.00 0.00 39.32 4.08
467 469 1.351707 CCGTGTGGCGTGATATTGC 59.648 57.895 0.00 0.00 39.32 3.56
468 470 0.373370 CACCGTGTGGCGTGATATTG 59.627 55.000 0.00 0.00 39.70 1.90
482 484 7.040340 TGGTTTTGAACATTATTATCACACCGT 60.040 33.333 0.00 0.00 32.72 4.83
484 486 8.519526 TCTGGTTTTGAACATTATTATCACACC 58.480 33.333 0.00 0.00 31.55 4.16
491 493 9.638239 GAGCAAATCTGGTTTTGAACATTATTA 57.362 29.630 7.93 0.00 38.58 0.98
530 546 3.766591 AGAATACAGATAGGCCTGGATCG 59.233 47.826 17.99 10.21 36.73 3.69
558 578 1.471501 CGTCTTCCTGGCATTCGATGA 60.472 52.381 0.00 0.00 0.00 2.92
618 638 0.033781 TTTCGTTTCGGTCGATGGGT 59.966 50.000 0.00 0.00 37.18 4.51
668 688 2.184167 CAAGCCGGGTCAACGTTGT 61.184 57.895 26.47 3.78 0.00 3.32
801 821 1.359459 GACGGATTTCTGTGGGCGAC 61.359 60.000 0.00 0.00 35.19 5.19
847 876 3.046870 GAGGCGATCGAGCAGGAT 58.953 61.111 21.57 0.00 39.27 3.24
856 885 2.583593 GTGTCCAGCGAGGCGATC 60.584 66.667 0.00 0.00 37.29 3.69
857 886 3.069980 GAGTGTCCAGCGAGGCGAT 62.070 63.158 0.00 0.00 37.29 4.58
858 887 3.749064 GAGTGTCCAGCGAGGCGA 61.749 66.667 0.00 0.00 37.29 5.54
861 890 2.126307 CGTGAGTGTCCAGCGAGG 60.126 66.667 0.00 0.00 39.47 4.63
862 891 2.645567 ACGTGAGTGTCCAGCGAG 59.354 61.111 0.00 0.00 46.97 5.03
924 957 0.617935 GCTGCTCTTTCCTCTTCCCT 59.382 55.000 0.00 0.00 0.00 4.20
936 969 1.547820 TCTGATGAAAGACGCTGCTCT 59.452 47.619 0.00 0.00 0.00 4.09
937 970 1.925847 CTCTGATGAAAGACGCTGCTC 59.074 52.381 0.00 0.00 0.00 4.26
950 1002 4.978580 TCGCGATTGATCTAAACTCTGATG 59.021 41.667 3.71 0.00 0.00 3.07
951 1003 5.188327 TCGCGATTGATCTAAACTCTGAT 57.812 39.130 3.71 0.00 0.00 2.90
952 1004 4.632538 TCGCGATTGATCTAAACTCTGA 57.367 40.909 3.71 0.00 0.00 3.27
1046 1104 5.808540 ACTGTGCATGACAAAATTGCATATC 59.191 36.000 4.84 0.00 46.90 1.63
1048 1106 5.136816 ACTGTGCATGACAAAATTGCATA 57.863 34.783 4.84 1.97 46.90 3.14
1052 1110 4.965158 GCAAAACTGTGCATGACAAAATTG 59.035 37.500 0.00 4.98 44.29 2.32
1059 1152 2.129607 CAAGGCAAAACTGTGCATGAC 58.870 47.619 0.00 0.00 46.81 3.06
1060 1153 1.755959 ACAAGGCAAAACTGTGCATGA 59.244 42.857 0.00 0.00 46.81 3.07
1061 1154 2.228138 ACAAGGCAAAACTGTGCATG 57.772 45.000 0.00 0.00 46.81 4.06
1069 1162 7.578852 ACTCGTACTAATTAACAAGGCAAAAC 58.421 34.615 0.00 0.00 0.00 2.43
1087 1180 8.986847 TGAAGCAATACTATAGAGTACTCGTAC 58.013 37.037 17.07 0.00 41.01 3.67
1090 1183 7.388224 TCCTGAAGCAATACTATAGAGTACTCG 59.612 40.741 17.07 5.64 41.01 4.18
1091 1184 8.624367 TCCTGAAGCAATACTATAGAGTACTC 57.376 38.462 15.41 15.41 41.01 2.59
1092 1185 9.019656 CATCCTGAAGCAATACTATAGAGTACT 57.980 37.037 6.78 0.00 41.01 2.73
1093 1186 8.798402 ACATCCTGAAGCAATACTATAGAGTAC 58.202 37.037 6.78 0.00 41.01 2.73
1094 1187 8.941995 ACATCCTGAAGCAATACTATAGAGTA 57.058 34.615 6.78 0.00 42.41 2.59
1095 1188 7.847711 ACATCCTGAAGCAATACTATAGAGT 57.152 36.000 6.78 0.00 39.92 3.24
1096 1189 9.553064 AAAACATCCTGAAGCAATACTATAGAG 57.447 33.333 6.78 0.00 0.00 2.43
1097 1190 9.905713 AAAAACATCCTGAAGCAATACTATAGA 57.094 29.630 6.78 0.00 0.00 1.98
1115 1208 3.297979 CGCGTGCAAGATACAAAAACATC 59.702 43.478 2.99 0.00 0.00 3.06
1134 1228 2.286418 GCCAGGATCTTTAATCAACGCG 60.286 50.000 3.53 3.53 0.00 6.01
1140 1234 1.265365 GCAGCGCCAGGATCTTTAATC 59.735 52.381 2.29 0.00 0.00 1.75
1290 1388 0.736636 ACCACATGCATGCATCGAAG 59.263 50.000 30.07 20.53 33.90 3.79
1315 1420 6.476706 CCCTAAACAAAACAAGAGAGCAAAAG 59.523 38.462 0.00 0.00 0.00 2.27
1328 1433 4.793028 GCTCTTGCTCACCCTAAACAAAAC 60.793 45.833 0.00 0.00 36.03 2.43
1329 1434 3.317993 GCTCTTGCTCACCCTAAACAAAA 59.682 43.478 0.00 0.00 36.03 2.44
1330 1435 2.884639 GCTCTTGCTCACCCTAAACAAA 59.115 45.455 0.00 0.00 36.03 2.83
1331 1436 2.158682 TGCTCTTGCTCACCCTAAACAA 60.159 45.455 0.00 0.00 40.48 2.83
1332 1437 1.419762 TGCTCTTGCTCACCCTAAACA 59.580 47.619 0.00 0.00 40.48 2.83
1453 1563 0.036732 AGAAGAAGCGGTTGATGGCA 59.963 50.000 3.70 0.00 0.00 4.92
1500 1610 4.460683 CCGGCCGGTTCGATGGAA 62.461 66.667 36.64 0.00 0.00 3.53
1527 1644 1.257936 CACACGTACACACAGAAGCAC 59.742 52.381 0.00 0.00 0.00 4.40
1531 1648 1.830086 CGACACACGTACACACAGAA 58.170 50.000 0.00 0.00 37.22 3.02
1557 1674 8.217115 CGCTAATGACACAATCACTAACATATC 58.783 37.037 0.00 0.00 41.24 1.63
1565 1682 3.002791 CCACGCTAATGACACAATCACT 58.997 45.455 0.00 0.00 41.24 3.41
1608 1729 5.885230 TTTATTCACTTGAGGCATGTCTG 57.115 39.130 3.48 0.00 0.00 3.51
1621 1745 5.559148 TTTGCCCAAACCATTTATTCACT 57.441 34.783 0.00 0.00 0.00 3.41
1638 1762 7.928706 TCTTCTAGAGTTGCTCTTATATTTGCC 59.071 37.037 3.87 0.00 41.50 4.52
1640 1766 8.977505 GCTCTTCTAGAGTTGCTCTTATATTTG 58.022 37.037 3.87 0.00 44.12 2.32
1666 1792 6.252015 CACGATTCAAATTATGGCTTGTTCAG 59.748 38.462 0.00 0.00 0.00 3.02
1668 1794 6.251376 GTCACGATTCAAATTATGGCTTGTTC 59.749 38.462 0.00 0.00 0.00 3.18
1669 1795 6.092748 GTCACGATTCAAATTATGGCTTGTT 58.907 36.000 0.00 0.00 0.00 2.83
1670 1796 5.393027 GGTCACGATTCAAATTATGGCTTGT 60.393 40.000 0.00 0.00 0.00 3.16
1671 1797 5.036737 GGTCACGATTCAAATTATGGCTTG 58.963 41.667 0.00 0.00 0.00 4.01
1672 1798 4.097892 GGGTCACGATTCAAATTATGGCTT 59.902 41.667 0.00 0.00 0.00 4.35
1673 1799 3.632145 GGGTCACGATTCAAATTATGGCT 59.368 43.478 0.00 0.00 0.00 4.75
1692 1818 0.471971 ACTCCATATAGCCAGCGGGT 60.472 55.000 4.36 4.60 37.19 5.28
1693 1819 0.036952 CACTCCATATAGCCAGCGGG 60.037 60.000 0.00 0.00 37.18 6.13
1734 1860 3.889134 TTGCGCAGAGGCCTGTCAG 62.889 63.158 12.00 2.79 42.35 3.51
1735 1861 2.956799 TTTTGCGCAGAGGCCTGTCA 62.957 55.000 12.00 0.00 42.35 3.58
1736 1862 1.589716 ATTTTGCGCAGAGGCCTGTC 61.590 55.000 12.00 0.00 42.35 3.51
1738 1864 0.099436 GTATTTTGCGCAGAGGCCTG 59.901 55.000 12.00 0.00 43.22 4.85
1739 1865 0.322456 TGTATTTTGCGCAGAGGCCT 60.322 50.000 11.31 3.86 36.38 5.19
1740 1866 0.525761 TTGTATTTTGCGCAGAGGCC 59.474 50.000 11.31 0.00 36.38 5.19
1741 1867 2.346099 TTTGTATTTTGCGCAGAGGC 57.654 45.000 11.31 2.02 0.00 4.70
1742 1868 3.543494 CGATTTTGTATTTTGCGCAGAGG 59.457 43.478 11.31 0.00 0.00 3.69
1743 1869 3.001758 GCGATTTTGTATTTTGCGCAGAG 60.002 43.478 11.31 0.00 42.21 3.35
1744 1870 2.914214 GCGATTTTGTATTTTGCGCAGA 59.086 40.909 11.31 2.14 42.21 4.26
1745 1871 2.027926 GGCGATTTTGTATTTTGCGCAG 59.972 45.455 11.31 0.00 44.16 5.18
1746 1872 1.989165 GGCGATTTTGTATTTTGCGCA 59.011 42.857 5.66 5.66 44.16 6.09
1747 1873 1.007524 CGGCGATTTTGTATTTTGCGC 60.008 47.619 0.00 0.00 41.95 6.09
1748 1874 2.510874 TCGGCGATTTTGTATTTTGCG 58.489 42.857 4.99 0.00 0.00 4.85
1749 1875 3.241208 CGTTCGGCGATTTTGTATTTTGC 60.241 43.478 11.76 0.00 44.77 3.68
1750 1876 3.299542 CCGTTCGGCGATTTTGTATTTTG 59.700 43.478 11.76 0.00 44.77 2.44
1751 1877 3.494232 CCGTTCGGCGATTTTGTATTTT 58.506 40.909 11.76 0.00 44.77 1.82
1767 1897 1.766143 GACGATGATGGCTGCCGTTC 61.766 60.000 15.76 14.13 33.32 3.95
1775 1905 5.343249 AGCAAATAAAAAGACGATGATGGC 58.657 37.500 0.00 0.00 0.00 4.40
1776 1906 6.789262 AGAGCAAATAAAAAGACGATGATGG 58.211 36.000 0.00 0.00 0.00 3.51
1777 1907 7.466805 TGAGAGCAAATAAAAAGACGATGATG 58.533 34.615 0.00 0.00 0.00 3.07
1778 1908 7.615582 TGAGAGCAAATAAAAAGACGATGAT 57.384 32.000 0.00 0.00 0.00 2.45
1779 1909 7.334171 TCATGAGAGCAAATAAAAAGACGATGA 59.666 33.333 0.00 0.00 0.00 2.92
1780 1910 7.466805 TCATGAGAGCAAATAAAAAGACGATG 58.533 34.615 0.00 0.00 0.00 3.84
1781 1911 7.615582 TCATGAGAGCAAATAAAAAGACGAT 57.384 32.000 0.00 0.00 0.00 3.73
1782 1912 7.615582 ATCATGAGAGCAAATAAAAAGACGA 57.384 32.000 0.09 0.00 0.00 4.20
1783 1913 8.679288 AAATCATGAGAGCAAATAAAAAGACG 57.321 30.769 0.09 0.00 0.00 4.18
1794 1924 9.630098 GAATTGAAACTAAAATCATGAGAGCAA 57.370 29.630 0.09 0.00 0.00 3.91
1802 1932 7.874016 TGCTGCTTGAATTGAAACTAAAATCAT 59.126 29.630 0.00 0.00 0.00 2.45
1851 1981 9.377312 TCTATCGTGTTTGATGACAATTATGAA 57.623 29.630 0.00 0.00 35.85 2.57
1864 1994 8.600625 GTTGCTAATTATGTCTATCGTGTTTGA 58.399 33.333 0.00 0.00 0.00 2.69
1900 2030 2.159448 TGCGACGATTTTTGGCCAATAG 60.159 45.455 21.26 7.61 0.00 1.73
1903 2033 0.600557 ATGCGACGATTTTTGGCCAA 59.399 45.000 16.05 16.05 0.00 4.52
1913 2043 8.581263 GTCGTAAAATATATGTAATGCGACGAT 58.419 33.333 0.00 0.00 36.88 3.73
1980 2110 2.167693 AGTTTGCGATGTCGATTAGGGA 59.832 45.455 6.60 0.00 43.02 4.20
1994 2124 2.793933 GCGGAGGTAGTAGTAGTTTGCG 60.794 54.545 0.00 0.00 0.00 4.85
2024 2154 3.771160 AACTAGGCGGCGGTGGAG 61.771 66.667 9.78 0.00 0.00 3.86
2041 2171 1.079490 AGGAGGATGAGGAGGACAACA 59.921 52.381 0.00 0.00 0.00 3.33
2042 2172 1.760029 GAGGAGGATGAGGAGGACAAC 59.240 57.143 0.00 0.00 0.00 3.32
2072 3948 1.678101 GAGTTTGCCTACATGGATGGC 59.322 52.381 15.87 15.87 46.26 4.40
2078 3954 1.710013 ACGACGAGTTTGCCTACATG 58.290 50.000 0.00 0.00 0.00 3.21
2090 3966 1.707239 CCGAGGAGGAGAACGACGAG 61.707 65.000 0.00 0.00 45.00 4.18
2120 3996 1.757118 CGACCAAGAGGAGGAGCAATA 59.243 52.381 0.00 0.00 38.69 1.90
2210 4099 6.570692 GCTACATACTTTGAACCAGTAGCTA 58.429 40.000 12.80 0.00 45.60 3.32
2211 4100 5.420409 GCTACATACTTTGAACCAGTAGCT 58.580 41.667 12.80 0.00 45.60 3.32
2212 4101 5.720261 GCTACATACTTTGAACCAGTAGC 57.280 43.478 0.00 0.00 43.85 3.58
2213 4102 6.818644 ACATGCTACATACTTTGAACCAGTAG 59.181 38.462 0.00 0.00 30.19 2.57
2214 4103 6.707290 ACATGCTACATACTTTGAACCAGTA 58.293 36.000 0.00 0.00 0.00 2.74
2215 4104 5.560724 ACATGCTACATACTTTGAACCAGT 58.439 37.500 0.00 0.00 0.00 4.00
2216 4105 6.500684 AACATGCTACATACTTTGAACCAG 57.499 37.500 0.00 0.00 0.00 4.00
2217 4106 6.488344 TCAAACATGCTACATACTTTGAACCA 59.512 34.615 0.00 0.00 0.00 3.67
2218 4107 6.908825 TCAAACATGCTACATACTTTGAACC 58.091 36.000 0.00 0.00 0.00 3.62
2219 4108 8.795786 TTTCAAACATGCTACATACTTTGAAC 57.204 30.769 16.95 0.00 37.35 3.18
2220 4109 9.243637 GTTTTCAAACATGCTACATACTTTGAA 57.756 29.630 14.98 14.98 38.74 2.69
2221 4110 8.629158 AGTTTTCAAACATGCTACATACTTTGA 58.371 29.630 5.26 0.00 41.30 2.69
2222 4111 8.801715 AGTTTTCAAACATGCTACATACTTTG 57.198 30.769 5.26 0.00 41.30 2.77
2223 4112 9.463443 GAAGTTTTCAAACATGCTACATACTTT 57.537 29.630 5.26 0.00 41.30 2.66
2224 4113 8.629158 TGAAGTTTTCAAACATGCTACATACTT 58.371 29.630 5.26 0.00 41.30 2.24
2225 4114 8.165239 TGAAGTTTTCAAACATGCTACATACT 57.835 30.769 5.26 0.00 41.30 2.12
2226 4115 8.289618 TCTGAAGTTTTCAAACATGCTACATAC 58.710 33.333 5.26 0.00 41.30 2.39
2227 4116 8.389779 TCTGAAGTTTTCAAACATGCTACATA 57.610 30.769 5.26 0.00 41.30 2.29
2228 4117 7.275888 TCTGAAGTTTTCAAACATGCTACAT 57.724 32.000 5.26 0.00 41.30 2.29
2229 4118 6.691754 TCTGAAGTTTTCAAACATGCTACA 57.308 33.333 5.26 0.00 41.30 2.74
2230 4119 7.985634 TTTCTGAAGTTTTCAAACATGCTAC 57.014 32.000 5.26 0.00 41.30 3.58
2240 4129 9.130661 TGGAATCTACAATTTCTGAAGTTTTCA 57.869 29.630 0.00 0.00 38.17 2.69
2249 4138 7.657354 TCGTGGATATGGAATCTACAATTTCTG 59.343 37.037 3.01 0.00 31.04 3.02
2339 4230 3.706802 TGTTCGCTTTGATGCTTTTCA 57.293 38.095 0.00 0.00 0.00 2.69
2340 4231 4.603825 CGTTTGTTCGCTTTGATGCTTTTC 60.604 41.667 0.00 0.00 0.00 2.29
2341 4232 3.242712 CGTTTGTTCGCTTTGATGCTTTT 59.757 39.130 0.00 0.00 0.00 2.27
2442 4335 4.452455 GTGACAAACAACTCATACAGGAGG 59.548 45.833 0.00 0.00 39.27 4.30
2460 4353 3.517901 CACTCTTATACTTGGGGGTGACA 59.482 47.826 0.00 0.00 0.00 3.58
2463 4356 4.164221 ACATCACTCTTATACTTGGGGGTG 59.836 45.833 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.