Multiple sequence alignment - TraesCS2D01G180600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G180600 chr2D 100.000 3047 0 0 1 3047 125273114 125270068 0.000000e+00 5627
1 TraesCS2D01G180600 chr2D 91.065 291 19 5 562 847 540821517 540821229 1.330000e-103 387
2 TraesCS2D01G180600 chr2D 75.163 612 55 35 1 565 538390759 538390198 6.660000e-47 198
3 TraesCS2D01G180600 chr2A 92.789 2108 94 21 847 2918 131324830 131322745 0.000000e+00 2998
4 TraesCS2D01G180600 chr2A 88.629 299 18 6 1 290 735258377 735258668 1.740000e-92 350
5 TraesCS2D01G180600 chr2A 84.141 227 12 6 314 519 735258644 735258867 6.660000e-47 198
6 TraesCS2D01G180600 chr2A 95.495 111 5 0 2935 3045 131322439 131322329 8.680000e-41 178
7 TraesCS2D01G180600 chr2A 96.552 87 3 0 847 933 131325134 131325048 8.800000e-31 145
8 TraesCS2D01G180600 chr2B 93.906 1362 59 5 854 2194 178168269 178166911 0.000000e+00 2034
9 TraesCS2D01G180600 chr2B 93.765 818 25 7 2234 3045 178166915 178166118 0.000000e+00 1205
10 TraesCS2D01G180600 chr2B 86.254 582 45 9 1 562 454349427 454348861 1.560000e-167 599
11 TraesCS2D01G180600 chr2B 91.349 289 20 3 566 850 111009127 111009414 1.020000e-104 390
12 TraesCS2D01G180600 chr6D 81.787 582 50 36 1 559 417349048 417349596 1.300000e-118 436
13 TraesCS2D01G180600 chr5B 93.286 283 13 4 568 846 606465162 606465442 2.190000e-111 412
14 TraesCS2D01G180600 chr5B 95.489 133 6 0 1 133 490727034 490726902 2.380000e-51 213
15 TraesCS2D01G180600 chr4B 88.824 340 14 7 248 565 195444813 195444476 2.200000e-106 396
16 TraesCS2D01G180600 chr7B 91.065 291 21 3 566 852 460381400 460381689 3.680000e-104 388
17 TraesCS2D01G180600 chr5D 91.319 288 20 3 566 849 450609053 450608767 3.680000e-104 388
18 TraesCS2D01G180600 chr5D 90.816 294 20 5 561 850 77866818 77866528 1.330000e-103 387
19 TraesCS2D01G180600 chr5D 77.811 338 35 17 260 559 367592365 367592700 4.040000e-39 172
20 TraesCS2D01G180600 chr6B 91.289 287 20 3 568 850 578559455 578559170 1.330000e-103 387
21 TraesCS2D01G180600 chr3D 90.972 288 20 4 566 849 511887670 511887955 1.710000e-102 383
22 TraesCS2D01G180600 chr3D 93.878 98 6 0 1 98 464061529 464061626 6.810000e-32 148
23 TraesCS2D01G180600 chr3D 76.176 340 39 18 266 566 464061721 464062057 1.140000e-29 141
24 TraesCS2D01G180600 chr1B 90.722 291 22 3 566 852 121564641 121564352 1.710000e-102 383
25 TraesCS2D01G180600 chr7A 86.641 262 14 5 322 563 183665591 183665851 1.390000e-68 270
26 TraesCS2D01G180600 chrUn 93.878 98 6 0 1 98 477283969 477283872 6.810000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G180600 chr2D 125270068 125273114 3046 True 5627.0 5627 100.000000 1 3047 1 chr2D.!!$R1 3046
1 TraesCS2D01G180600 chr2A 131322329 131325134 2805 True 1107.0 2998 94.945333 847 3045 3 chr2A.!!$R1 2198
2 TraesCS2D01G180600 chr2B 178166118 178168269 2151 True 1619.5 2034 93.835500 854 3045 2 chr2B.!!$R2 2191
3 TraesCS2D01G180600 chr2B 454348861 454349427 566 True 599.0 599 86.254000 1 562 1 chr2B.!!$R1 561
4 TraesCS2D01G180600 chr6D 417349048 417349596 548 False 436.0 436 81.787000 1 559 1 chr6D.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 640 0.179001 AGAGGGTGTTTGTTTCCGGG 60.179 55.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 2586 0.461163 TGCCATGCAATGCAATCAGC 60.461 50.0 13.45 13.11 44.97 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.885644 CGGCAATCTCGTCGGGTG 60.886 66.667 0.00 0.00 0.00 4.61
44 45 2.264794 GCAATCTCGTCGGGTGGT 59.735 61.111 0.00 0.00 0.00 4.16
62 63 1.822990 GGTGTTAGGGTCGATGAGTGA 59.177 52.381 0.00 0.00 0.00 3.41
76 77 4.396478 CGATGAGTGACTAGAAGAGGACAA 59.604 45.833 0.00 0.00 0.00 3.18
519 573 3.089784 CCCACGCGAGGAAAATCG 58.910 61.111 24.92 1.71 45.48 3.34
569 623 4.703897 CCAAATGAGGCCGTAAGATTAGA 58.296 43.478 0.00 0.00 43.02 2.10
570 624 4.752101 CCAAATGAGGCCGTAAGATTAGAG 59.248 45.833 0.00 0.00 43.02 2.43
571 625 4.608948 AATGAGGCCGTAAGATTAGAGG 57.391 45.455 0.00 0.00 43.02 3.69
572 626 2.317040 TGAGGCCGTAAGATTAGAGGG 58.683 52.381 0.00 0.00 43.02 4.30
573 627 2.317973 GAGGCCGTAAGATTAGAGGGT 58.682 52.381 0.00 0.00 43.02 4.34
574 628 2.036089 GAGGCCGTAAGATTAGAGGGTG 59.964 54.545 0.00 0.00 43.02 4.61
575 629 1.761198 GGCCGTAAGATTAGAGGGTGT 59.239 52.381 0.00 0.00 43.02 4.16
576 630 2.169978 GGCCGTAAGATTAGAGGGTGTT 59.830 50.000 0.00 0.00 43.02 3.32
577 631 3.370209 GGCCGTAAGATTAGAGGGTGTTT 60.370 47.826 0.00 0.00 43.02 2.83
578 632 3.621715 GCCGTAAGATTAGAGGGTGTTTG 59.378 47.826 0.00 0.00 43.02 2.93
579 633 4.828829 CCGTAAGATTAGAGGGTGTTTGT 58.171 43.478 0.00 0.00 43.02 2.83
580 634 5.243207 CCGTAAGATTAGAGGGTGTTTGTT 58.757 41.667 0.00 0.00 43.02 2.83
581 635 5.704053 CCGTAAGATTAGAGGGTGTTTGTTT 59.296 40.000 0.00 0.00 43.02 2.83
582 636 6.128363 CCGTAAGATTAGAGGGTGTTTGTTTC 60.128 42.308 0.00 0.00 43.02 2.78
583 637 6.128363 CGTAAGATTAGAGGGTGTTTGTTTCC 60.128 42.308 0.00 0.00 43.02 3.13
584 638 4.324267 AGATTAGAGGGTGTTTGTTTCCG 58.676 43.478 0.00 0.00 0.00 4.30
585 639 2.554370 TAGAGGGTGTTTGTTTCCGG 57.446 50.000 0.00 0.00 0.00 5.14
586 640 0.179001 AGAGGGTGTTTGTTTCCGGG 60.179 55.000 0.00 0.00 0.00 5.73
587 641 1.152631 AGGGTGTTTGTTTCCGGGG 60.153 57.895 0.00 0.00 0.00 5.73
588 642 1.152715 GGGTGTTTGTTTCCGGGGA 60.153 57.895 0.00 0.00 0.00 4.81
589 643 1.457823 GGGTGTTTGTTTCCGGGGAC 61.458 60.000 0.00 0.68 0.00 4.46
590 644 0.466739 GGTGTTTGTTTCCGGGGACT 60.467 55.000 0.00 0.00 0.00 3.85
591 645 1.395635 GTGTTTGTTTCCGGGGACTT 58.604 50.000 0.00 0.00 0.00 3.01
592 646 2.574450 GTGTTTGTTTCCGGGGACTTA 58.426 47.619 0.00 0.00 0.00 2.24
593 647 3.151554 GTGTTTGTTTCCGGGGACTTAT 58.848 45.455 0.00 0.00 0.00 1.73
594 648 3.570975 GTGTTTGTTTCCGGGGACTTATT 59.429 43.478 0.00 0.00 0.00 1.40
595 649 4.761227 GTGTTTGTTTCCGGGGACTTATTA 59.239 41.667 0.00 0.00 0.00 0.98
596 650 5.005094 TGTTTGTTTCCGGGGACTTATTAG 58.995 41.667 0.00 0.00 0.00 1.73
597 651 4.914177 TTGTTTCCGGGGACTTATTAGT 57.086 40.909 0.00 0.00 37.31 2.24
598 652 4.914177 TGTTTCCGGGGACTTATTAGTT 57.086 40.909 0.00 0.00 33.84 2.24
599 653 5.245584 TGTTTCCGGGGACTTATTAGTTT 57.754 39.130 0.00 0.00 33.84 2.66
600 654 6.371595 TGTTTCCGGGGACTTATTAGTTTA 57.628 37.500 0.00 0.00 33.84 2.01
601 655 6.408869 TGTTTCCGGGGACTTATTAGTTTAG 58.591 40.000 0.00 0.00 33.84 1.85
602 656 5.619132 TTCCGGGGACTTATTAGTTTAGG 57.381 43.478 0.00 0.00 33.84 2.69
603 657 4.882559 TCCGGGGACTTATTAGTTTAGGA 58.117 43.478 0.00 0.00 33.84 2.94
604 658 5.279685 TCCGGGGACTTATTAGTTTAGGAA 58.720 41.667 0.00 0.00 33.84 3.36
605 659 5.129320 TCCGGGGACTTATTAGTTTAGGAAC 59.871 44.000 0.00 0.00 33.84 3.62
607 661 6.352479 CCGGGGACTTATTAGTTTAGGAACTT 60.352 42.308 0.00 0.00 43.48 2.66
608 662 7.147672 CCGGGGACTTATTAGTTTAGGAACTTA 60.148 40.741 0.00 0.00 43.48 2.24
609 663 8.260114 CGGGGACTTATTAGTTTAGGAACTTAA 58.740 37.037 0.00 0.00 43.48 1.85
610 664 9.964354 GGGGACTTATTAGTTTAGGAACTTAAA 57.036 33.333 0.00 0.00 43.48 1.52
628 682 2.702270 AAAAAGCCCAAGTCCCATCT 57.298 45.000 0.00 0.00 0.00 2.90
629 683 3.825908 AAAAAGCCCAAGTCCCATCTA 57.174 42.857 0.00 0.00 0.00 1.98
630 684 3.825908 AAAAGCCCAAGTCCCATCTAA 57.174 42.857 0.00 0.00 0.00 2.10
631 685 3.825908 AAAGCCCAAGTCCCATCTAAA 57.174 42.857 0.00 0.00 0.00 1.85
632 686 2.808906 AGCCCAAGTCCCATCTAAAC 57.191 50.000 0.00 0.00 0.00 2.01
633 687 2.279173 AGCCCAAGTCCCATCTAAACT 58.721 47.619 0.00 0.00 0.00 2.66
634 688 3.460825 AGCCCAAGTCCCATCTAAACTA 58.539 45.455 0.00 0.00 0.00 2.24
635 689 3.850173 AGCCCAAGTCCCATCTAAACTAA 59.150 43.478 0.00 0.00 0.00 2.24
636 690 4.291249 AGCCCAAGTCCCATCTAAACTAAA 59.709 41.667 0.00 0.00 0.00 1.85
637 691 4.398358 GCCCAAGTCCCATCTAAACTAAAC 59.602 45.833 0.00 0.00 0.00 2.01
638 692 5.566469 CCCAAGTCCCATCTAAACTAAACA 58.434 41.667 0.00 0.00 0.00 2.83
639 693 5.648092 CCCAAGTCCCATCTAAACTAAACAG 59.352 44.000 0.00 0.00 0.00 3.16
640 694 5.648092 CCAAGTCCCATCTAAACTAAACAGG 59.352 44.000 0.00 0.00 0.00 4.00
641 695 6.472887 CAAGTCCCATCTAAACTAAACAGGA 58.527 40.000 0.00 0.00 0.00 3.86
642 696 6.301169 AGTCCCATCTAAACTAAACAGGAG 57.699 41.667 0.00 0.00 0.00 3.69
643 697 5.189934 AGTCCCATCTAAACTAAACAGGAGG 59.810 44.000 0.00 0.00 0.00 4.30
644 698 4.473559 TCCCATCTAAACTAAACAGGAGGG 59.526 45.833 0.00 0.00 0.00 4.30
645 699 4.473559 CCCATCTAAACTAAACAGGAGGGA 59.526 45.833 0.00 0.00 33.23 4.20
646 700 5.429130 CCATCTAAACTAAACAGGAGGGAC 58.571 45.833 0.00 0.00 0.00 4.46
648 702 6.296489 CCATCTAAACTAAACAGGAGGGACTT 60.296 42.308 0.00 0.00 41.55 3.01
649 703 7.093024 CCATCTAAACTAAACAGGAGGGACTTA 60.093 40.741 0.00 0.00 41.55 2.24
650 704 8.487028 CATCTAAACTAAACAGGAGGGACTTAT 58.513 37.037 0.00 0.00 41.55 1.73
651 705 9.725206 ATCTAAACTAAACAGGAGGGACTTATA 57.275 33.333 0.00 0.00 41.55 0.98
652 706 9.198475 TCTAAACTAAACAGGAGGGACTTATAG 57.802 37.037 0.00 0.00 41.55 1.31
653 707 6.809976 AACTAAACAGGAGGGACTTATAGG 57.190 41.667 0.00 0.00 41.55 2.57
654 708 5.217400 ACTAAACAGGAGGGACTTATAGGG 58.783 45.833 0.00 0.00 41.55 3.53
655 709 4.363546 AAACAGGAGGGACTTATAGGGA 57.636 45.455 0.00 0.00 41.55 4.20
656 710 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
657 711 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
658 712 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
659 713 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
660 714 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
661 715 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
662 716 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
663 717 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
664 718 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
665 719 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
666 720 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
667 721 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
668 722 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
669 723 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
670 724 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
671 725 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
672 726 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
673 727 3.161866 GGGACTTAAAGTGGGCATTTGA 58.838 45.455 0.00 0.00 0.00 2.69
674 728 3.193479 GGGACTTAAAGTGGGCATTTGAG 59.807 47.826 0.00 0.00 31.53 3.02
675 729 4.079253 GGACTTAAAGTGGGCATTTGAGA 58.921 43.478 7.52 0.00 30.26 3.27
676 730 4.082733 GGACTTAAAGTGGGCATTTGAGAC 60.083 45.833 7.52 2.89 30.26 3.36
677 731 4.729868 ACTTAAAGTGGGCATTTGAGACT 58.270 39.130 7.52 0.00 30.26 3.24
678 732 5.140454 ACTTAAAGTGGGCATTTGAGACTT 58.860 37.500 7.52 0.00 30.26 3.01
679 733 6.303839 ACTTAAAGTGGGCATTTGAGACTTA 58.696 36.000 7.52 0.00 30.26 2.24
680 734 6.948309 ACTTAAAGTGGGCATTTGAGACTTAT 59.052 34.615 7.52 0.00 30.26 1.73
681 735 5.649782 AAAGTGGGCATTTGAGACTTATG 57.350 39.130 0.00 0.00 0.00 1.90
682 736 4.574674 AGTGGGCATTTGAGACTTATGA 57.425 40.909 0.00 0.00 0.00 2.15
683 737 4.922206 AGTGGGCATTTGAGACTTATGAA 58.078 39.130 0.00 0.00 0.00 2.57
684 738 5.324409 AGTGGGCATTTGAGACTTATGAAA 58.676 37.500 0.00 0.00 0.00 2.69
685 739 5.954150 AGTGGGCATTTGAGACTTATGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
686 740 7.118723 AGTGGGCATTTGAGACTTATGAAATA 58.881 34.615 0.00 0.00 0.00 1.40
687 741 7.615365 AGTGGGCATTTGAGACTTATGAAATAA 59.385 33.333 0.00 0.00 36.20 1.40
715 769 7.454553 TCTCAAGGAGAGTCTTATAGGTACT 57.545 40.000 0.00 0.00 44.98 2.73
716 770 7.874252 TCTCAAGGAGAGTCTTATAGGTACTT 58.126 38.462 0.00 0.00 44.98 2.24
717 771 9.000978 TCTCAAGGAGAGTCTTATAGGTACTTA 57.999 37.037 0.00 0.00 44.98 2.24
718 772 9.802039 CTCAAGGAGAGTCTTATAGGTACTTAT 57.198 37.037 2.77 2.77 38.75 1.73
766 820 7.074653 ACTTATAAGTCTCAGGAACCAAACA 57.925 36.000 12.50 0.00 32.86 2.83
767 821 7.162082 ACTTATAAGTCTCAGGAACCAAACAG 58.838 38.462 12.50 0.00 32.86 3.16
768 822 5.825593 ATAAGTCTCAGGAACCAAACAGA 57.174 39.130 0.00 0.00 0.00 3.41
769 823 4.713792 AAGTCTCAGGAACCAAACAGAT 57.286 40.909 0.00 0.00 0.00 2.90
770 824 5.825593 AAGTCTCAGGAACCAAACAGATA 57.174 39.130 0.00 0.00 0.00 1.98
771 825 5.825593 AGTCTCAGGAACCAAACAGATAA 57.174 39.130 0.00 0.00 0.00 1.75
772 826 6.187727 AGTCTCAGGAACCAAACAGATAAA 57.812 37.500 0.00 0.00 0.00 1.40
773 827 6.234177 AGTCTCAGGAACCAAACAGATAAAG 58.766 40.000 0.00 0.00 0.00 1.85
774 828 6.043243 AGTCTCAGGAACCAAACAGATAAAGA 59.957 38.462 0.00 0.00 0.00 2.52
775 829 6.147985 GTCTCAGGAACCAAACAGATAAAGAC 59.852 42.308 0.00 0.00 0.00 3.01
776 830 6.043243 TCTCAGGAACCAAACAGATAAAGACT 59.957 38.462 0.00 0.00 0.00 3.24
777 831 6.601332 TCAGGAACCAAACAGATAAAGACTT 58.399 36.000 0.00 0.00 0.00 3.01
778 832 7.060421 TCAGGAACCAAACAGATAAAGACTTT 58.940 34.615 5.62 5.62 0.00 2.66
779 833 7.559897 TCAGGAACCAAACAGATAAAGACTTTT 59.440 33.333 5.61 0.00 0.00 2.27
780 834 8.197439 CAGGAACCAAACAGATAAAGACTTTTT 58.803 33.333 5.61 0.00 0.00 1.94
781 835 9.416284 AGGAACCAAACAGATAAAGACTTTTTA 57.584 29.630 5.61 0.00 0.00 1.52
782 836 9.678941 GGAACCAAACAGATAAAGACTTTTTAG 57.321 33.333 5.61 0.00 0.00 1.85
783 837 9.678941 GAACCAAACAGATAAAGACTTTTTAGG 57.321 33.333 5.61 1.03 0.00 2.69
784 838 8.990163 ACCAAACAGATAAAGACTTTTTAGGA 57.010 30.769 5.61 0.00 0.00 2.94
785 839 9.416284 ACCAAACAGATAAAGACTTTTTAGGAA 57.584 29.630 5.61 0.00 0.00 3.36
786 840 9.678941 CCAAACAGATAAAGACTTTTTAGGAAC 57.321 33.333 5.61 0.00 0.00 3.62
790 844 9.067986 ACAGATAAAGACTTTTTAGGAACTTGG 57.932 33.333 5.61 0.00 41.75 3.61
791 845 9.284968 CAGATAAAGACTTTTTAGGAACTTGGA 57.715 33.333 5.61 0.00 41.75 3.53
792 846 9.862149 AGATAAAGACTTTTTAGGAACTTGGAA 57.138 29.630 5.61 0.00 41.75 3.53
805 859 7.718334 AGGAACTTGGAATTTATAAGTTGGG 57.282 36.000 15.75 0.00 42.75 4.12
806 860 7.475299 AGGAACTTGGAATTTATAAGTTGGGA 58.525 34.615 15.75 0.00 42.75 4.37
807 861 8.122481 AGGAACTTGGAATTTATAAGTTGGGAT 58.878 33.333 15.75 0.00 42.75 3.85
808 862 8.758829 GGAACTTGGAATTTATAAGTTGGGATT 58.241 33.333 15.75 0.00 42.75 3.01
842 896 9.612620 GTCTTTAAGACTTATGAACCAAACATG 57.387 33.333 16.96 0.00 41.88 3.21
843 897 8.792633 TCTTTAAGACTTATGAACCAAACATGG 58.207 33.333 0.00 0.00 0.00 3.66
844 898 8.472007 TTTAAGACTTATGAACCAAACATGGT 57.528 30.769 0.00 0.00 45.55 3.55
845 899 6.575162 AAGACTTATGAACCAAACATGGTC 57.425 37.500 0.20 0.00 42.20 4.02
897 951 3.438434 GCTTGAGATTGTTCAGTTCCTCC 59.562 47.826 0.00 0.00 0.00 4.30
954 1312 2.492881 TGTCCGCTCGTAAACCTTATCA 59.507 45.455 0.00 0.00 0.00 2.15
995 1361 2.434359 GACGGCCGGAAACTGAGG 60.434 66.667 31.76 0.00 0.00 3.86
1218 1590 4.767255 GCCGTCTCCAGCCACCTG 62.767 72.222 0.00 0.00 38.85 4.00
1278 1656 1.290955 CCAGCTGCCAATGGTTGTG 59.709 57.895 8.66 0.00 0.00 3.33
1921 2299 2.171725 GCCATCCACGCGTTCTACC 61.172 63.158 10.22 0.00 0.00 3.18
1923 2301 0.527817 CCATCCACGCGTTCTACCTC 60.528 60.000 10.22 0.00 0.00 3.85
1981 2359 1.593209 GTGGCCGAGTTCGTGAACA 60.593 57.895 14.61 0.00 43.47 3.18
2089 2467 5.069119 AGTGTGAGTGTGTGACTGATCTTTA 59.931 40.000 0.00 0.00 33.83 1.85
2090 2468 5.753438 GTGTGAGTGTGTGACTGATCTTTAA 59.247 40.000 0.00 0.00 33.83 1.52
2128 2508 2.274437 TGATTCTTCGAGCTGTGATGC 58.726 47.619 0.00 0.00 0.00 3.91
2201 2586 2.877300 CTGGTTCCCAGTGATTGTCTGG 60.877 54.545 1.99 5.13 45.82 3.86
2210 2595 1.814394 GTGATTGTCTGGCTGATTGCA 59.186 47.619 0.00 0.00 45.15 4.08
2224 2609 2.581208 ATTGCATTGCATGGCACGGG 62.581 55.000 12.95 0.00 40.23 5.28
2357 2757 4.007644 CCTGTCACGGAGCAGGCA 62.008 66.667 8.15 0.00 44.65 4.75
2404 2804 4.794278 TGCGAACTTAGACAGTAATGGA 57.206 40.909 0.00 0.00 32.94 3.41
2490 2890 3.005554 GCATCTTGAGCAGTTGAGCTAA 58.994 45.455 0.00 0.00 46.75 3.09
2533 2933 2.358247 GAATGACACACCGCCCGT 60.358 61.111 0.00 0.00 0.00 5.28
2560 2961 2.586245 TCCAGCCGGAGCATTCTG 59.414 61.111 5.05 0.63 43.56 3.02
2938 3631 2.141517 CTGCTGACTGAACTGAAGGTG 58.858 52.381 0.00 0.00 0.00 4.00
3045 3740 0.399454 CGGCCTCCTTCCATGATGAT 59.601 55.000 0.00 0.00 0.00 2.45
3046 3741 1.610102 CGGCCTCCTTCCATGATGATC 60.610 57.143 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.507756 CGAGATTGCCGTGATTTTCTGATA 59.492 41.667 0.00 0.00 0.00 2.15
42 43 1.822990 TCACTCATCGACCCTAACACC 59.177 52.381 0.00 0.00 0.00 4.16
44 45 2.803956 AGTCACTCATCGACCCTAACA 58.196 47.619 0.00 0.00 33.70 2.41
62 63 4.262079 CCAAGAACGTTGTCCTCTTCTAGT 60.262 45.833 5.00 0.00 0.00 2.57
76 77 2.430921 CGAGCTCGCCAAGAACGT 60.431 61.111 25.07 0.00 0.00 3.99
160 163 1.069935 GTAAGCCATCTCCGCCTCC 59.930 63.158 0.00 0.00 0.00 4.30
380 414 1.441729 GGAATCGCTCGTCCCATCA 59.558 57.895 0.00 0.00 0.00 3.07
519 573 1.674651 GTTGAGGGGGTTTCGAGGC 60.675 63.158 0.00 0.00 0.00 4.70
520 574 1.002502 GGTTGAGGGGGTTTCGAGG 60.003 63.158 0.00 0.00 0.00 4.63
559 613 6.128363 CGGAAACAAACACCCTCTAATCTTAC 60.128 42.308 0.00 0.00 0.00 2.34
562 616 4.324267 CGGAAACAAACACCCTCTAATCT 58.676 43.478 0.00 0.00 0.00 2.40
563 617 3.439129 CCGGAAACAAACACCCTCTAATC 59.561 47.826 0.00 0.00 0.00 1.75
564 618 3.418047 CCGGAAACAAACACCCTCTAAT 58.582 45.455 0.00 0.00 0.00 1.73
565 619 2.487625 CCCGGAAACAAACACCCTCTAA 60.488 50.000 0.73 0.00 0.00 2.10
566 620 1.072648 CCCGGAAACAAACACCCTCTA 59.927 52.381 0.73 0.00 0.00 2.43
567 621 0.179001 CCCGGAAACAAACACCCTCT 60.179 55.000 0.73 0.00 0.00 3.69
568 622 1.176619 CCCCGGAAACAAACACCCTC 61.177 60.000 0.73 0.00 0.00 4.30
569 623 1.152631 CCCCGGAAACAAACACCCT 60.153 57.895 0.73 0.00 0.00 4.34
570 624 1.152715 TCCCCGGAAACAAACACCC 60.153 57.895 0.73 0.00 0.00 4.61
571 625 0.466739 AGTCCCCGGAAACAAACACC 60.467 55.000 0.73 0.00 0.00 4.16
572 626 1.395635 AAGTCCCCGGAAACAAACAC 58.604 50.000 0.73 0.00 0.00 3.32
573 627 3.512219 ATAAGTCCCCGGAAACAAACA 57.488 42.857 0.73 0.00 0.00 2.83
574 628 5.005740 ACTAATAAGTCCCCGGAAACAAAC 58.994 41.667 0.73 0.00 0.00 2.93
575 629 5.245584 ACTAATAAGTCCCCGGAAACAAA 57.754 39.130 0.73 0.00 0.00 2.83
576 630 4.914177 ACTAATAAGTCCCCGGAAACAA 57.086 40.909 0.73 0.00 0.00 2.83
577 631 4.914177 AACTAATAAGTCCCCGGAAACA 57.086 40.909 0.73 0.00 33.75 2.83
578 632 5.819379 CCTAAACTAATAAGTCCCCGGAAAC 59.181 44.000 0.73 0.00 33.75 2.78
579 633 5.725822 TCCTAAACTAATAAGTCCCCGGAAA 59.274 40.000 0.73 0.00 33.75 3.13
580 634 5.279685 TCCTAAACTAATAAGTCCCCGGAA 58.720 41.667 0.73 0.00 33.75 4.30
581 635 4.882559 TCCTAAACTAATAAGTCCCCGGA 58.117 43.478 0.73 0.00 33.75 5.14
582 636 5.129980 AGTTCCTAAACTAATAAGTCCCCGG 59.870 44.000 0.00 0.00 43.98 5.73
583 637 6.231258 AGTTCCTAAACTAATAAGTCCCCG 57.769 41.667 0.00 0.00 43.98 5.73
584 638 9.964354 TTTAAGTTCCTAAACTAATAAGTCCCC 57.036 33.333 0.00 0.00 45.07 4.81
609 663 2.702270 AGATGGGACTTGGGCTTTTT 57.298 45.000 0.00 0.00 0.00 1.94
610 664 3.825908 TTAGATGGGACTTGGGCTTTT 57.174 42.857 0.00 0.00 0.00 2.27
611 665 3.076032 AGTTTAGATGGGACTTGGGCTTT 59.924 43.478 0.00 0.00 0.00 3.51
612 666 2.649816 AGTTTAGATGGGACTTGGGCTT 59.350 45.455 0.00 0.00 0.00 4.35
613 667 2.279173 AGTTTAGATGGGACTTGGGCT 58.721 47.619 0.00 0.00 0.00 5.19
614 668 2.808906 AGTTTAGATGGGACTTGGGC 57.191 50.000 0.00 0.00 0.00 5.36
615 669 5.566469 TGTTTAGTTTAGATGGGACTTGGG 58.434 41.667 0.00 0.00 0.00 4.12
616 670 5.648092 CCTGTTTAGTTTAGATGGGACTTGG 59.352 44.000 0.00 0.00 0.00 3.61
617 671 6.472887 TCCTGTTTAGTTTAGATGGGACTTG 58.527 40.000 0.00 0.00 0.00 3.16
618 672 6.296489 CCTCCTGTTTAGTTTAGATGGGACTT 60.296 42.308 0.00 0.00 0.00 3.01
619 673 5.189934 CCTCCTGTTTAGTTTAGATGGGACT 59.810 44.000 0.00 0.00 0.00 3.85
620 674 5.429130 CCTCCTGTTTAGTTTAGATGGGAC 58.571 45.833 0.00 0.00 0.00 4.46
621 675 4.473559 CCCTCCTGTTTAGTTTAGATGGGA 59.526 45.833 0.00 0.00 31.98 4.37
622 676 4.473559 TCCCTCCTGTTTAGTTTAGATGGG 59.526 45.833 0.00 0.00 0.00 4.00
623 677 5.189934 AGTCCCTCCTGTTTAGTTTAGATGG 59.810 44.000 0.00 0.00 0.00 3.51
624 678 6.301169 AGTCCCTCCTGTTTAGTTTAGATG 57.699 41.667 0.00 0.00 0.00 2.90
625 679 6.954352 AAGTCCCTCCTGTTTAGTTTAGAT 57.046 37.500 0.00 0.00 0.00 1.98
626 680 9.198475 CTATAAGTCCCTCCTGTTTAGTTTAGA 57.802 37.037 0.00 0.00 0.00 2.10
627 681 8.422566 CCTATAAGTCCCTCCTGTTTAGTTTAG 58.577 40.741 0.00 0.00 0.00 1.85
628 682 7.346436 CCCTATAAGTCCCTCCTGTTTAGTTTA 59.654 40.741 0.00 0.00 0.00 2.01
629 683 6.158169 CCCTATAAGTCCCTCCTGTTTAGTTT 59.842 42.308 0.00 0.00 0.00 2.66
630 684 5.666265 CCCTATAAGTCCCTCCTGTTTAGTT 59.334 44.000 0.00 0.00 0.00 2.24
631 685 5.042827 TCCCTATAAGTCCCTCCTGTTTAGT 60.043 44.000 0.00 0.00 0.00 2.24
632 686 5.304871 GTCCCTATAAGTCCCTCCTGTTTAG 59.695 48.000 0.00 0.00 0.00 1.85
633 687 5.042827 AGTCCCTATAAGTCCCTCCTGTTTA 60.043 44.000 0.00 0.00 0.00 2.01
634 688 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
635 689 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
636 690 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
637 691 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
638 692 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
639 693 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
640 694 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
641 695 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
642 696 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
643 697 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
644 698 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
645 699 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
646 700 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
647 701 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
648 702 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
649 703 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
650 704 4.043561 TCAAATGCCCACTTTAAGTCCCTA 59.956 41.667 0.00 0.00 0.00 3.53
651 705 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
652 706 3.161866 TCAAATGCCCACTTTAAGTCCC 58.838 45.455 0.00 0.00 0.00 4.46
653 707 4.079253 TCTCAAATGCCCACTTTAAGTCC 58.921 43.478 0.00 0.00 0.00 3.85
654 708 4.762251 AGTCTCAAATGCCCACTTTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
655 709 4.729868 AGTCTCAAATGCCCACTTTAAGT 58.270 39.130 0.00 0.00 0.00 2.24
656 710 5.712152 AAGTCTCAAATGCCCACTTTAAG 57.288 39.130 0.00 0.00 0.00 1.85
657 711 6.945435 TCATAAGTCTCAAATGCCCACTTTAA 59.055 34.615 0.00 0.00 0.00 1.52
658 712 6.480763 TCATAAGTCTCAAATGCCCACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
659 713 5.324409 TCATAAGTCTCAAATGCCCACTTT 58.676 37.500 0.00 0.00 0.00 2.66
660 714 4.922206 TCATAAGTCTCAAATGCCCACTT 58.078 39.130 0.00 0.00 0.00 3.16
661 715 4.574674 TCATAAGTCTCAAATGCCCACT 57.425 40.909 0.00 0.00 0.00 4.00
662 716 5.643379 TTTCATAAGTCTCAAATGCCCAC 57.357 39.130 0.00 0.00 0.00 4.61
663 717 7.833682 TCTTATTTCATAAGTCTCAAATGCCCA 59.166 33.333 3.93 0.00 42.21 5.36
664 718 8.131731 GTCTTATTTCATAAGTCTCAAATGCCC 58.868 37.037 3.93 0.00 42.21 5.36
665 719 8.897752 AGTCTTATTTCATAAGTCTCAAATGCC 58.102 33.333 3.93 0.00 42.21 4.40
673 727 9.261035 TCCTTGAGAGTCTTATTTCATAAGTCT 57.739 33.333 0.00 3.77 41.61 3.24
674 728 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
675 729 9.261035 TCTCCTTGAGAGTCTTATTTCATAAGT 57.739 33.333 0.00 0.00 43.71 2.24
691 745 7.454553 AGTACCTATAAGACTCTCCTTGAGA 57.545 40.000 0.00 0.00 45.39 3.27
742 796 7.016268 TCTGTTTGGTTCCTGAGACTTATAAGT 59.984 37.037 18.05 18.05 43.16 2.24
743 797 7.386851 TCTGTTTGGTTCCTGAGACTTATAAG 58.613 38.462 11.05 11.05 0.00 1.73
744 798 7.311092 TCTGTTTGGTTCCTGAGACTTATAA 57.689 36.000 0.00 0.00 0.00 0.98
745 799 6.928348 TCTGTTTGGTTCCTGAGACTTATA 57.072 37.500 0.00 0.00 0.00 0.98
746 800 5.825593 TCTGTTTGGTTCCTGAGACTTAT 57.174 39.130 0.00 0.00 0.00 1.73
747 801 5.825593 ATCTGTTTGGTTCCTGAGACTTA 57.174 39.130 0.00 0.00 0.00 2.24
748 802 4.713792 ATCTGTTTGGTTCCTGAGACTT 57.286 40.909 0.00 0.00 0.00 3.01
749 803 5.825593 TTATCTGTTTGGTTCCTGAGACT 57.174 39.130 0.00 0.00 0.00 3.24
750 804 6.147985 GTCTTTATCTGTTTGGTTCCTGAGAC 59.852 42.308 0.00 0.00 0.00 3.36
751 805 6.043243 AGTCTTTATCTGTTTGGTTCCTGAGA 59.957 38.462 0.00 0.00 0.00 3.27
752 806 6.234177 AGTCTTTATCTGTTTGGTTCCTGAG 58.766 40.000 0.00 0.00 0.00 3.35
753 807 6.187727 AGTCTTTATCTGTTTGGTTCCTGA 57.812 37.500 0.00 0.00 0.00 3.86
754 808 6.884280 AAGTCTTTATCTGTTTGGTTCCTG 57.116 37.500 0.00 0.00 0.00 3.86
755 809 7.898014 AAAAGTCTTTATCTGTTTGGTTCCT 57.102 32.000 0.00 0.00 0.00 3.36
756 810 9.678941 CTAAAAAGTCTTTATCTGTTTGGTTCC 57.321 33.333 0.00 0.00 0.00 3.62
757 811 9.678941 CCTAAAAAGTCTTTATCTGTTTGGTTC 57.321 33.333 0.00 0.00 0.00 3.62
758 812 9.416284 TCCTAAAAAGTCTTTATCTGTTTGGTT 57.584 29.630 0.00 0.00 0.00 3.67
759 813 8.990163 TCCTAAAAAGTCTTTATCTGTTTGGT 57.010 30.769 0.00 0.00 0.00 3.67
760 814 9.678941 GTTCCTAAAAAGTCTTTATCTGTTTGG 57.321 33.333 0.00 0.28 0.00 3.28
764 818 9.067986 CCAAGTTCCTAAAAAGTCTTTATCTGT 57.932 33.333 0.00 0.00 0.00 3.41
765 819 9.284968 TCCAAGTTCCTAAAAAGTCTTTATCTG 57.715 33.333 0.00 0.00 0.00 2.90
766 820 9.862149 TTCCAAGTTCCTAAAAAGTCTTTATCT 57.138 29.630 0.00 0.00 0.00 1.98
779 833 9.250246 CCCAACTTATAAATTCCAAGTTCCTAA 57.750 33.333 8.34 0.00 39.78 2.69
780 834 8.616598 TCCCAACTTATAAATTCCAAGTTCCTA 58.383 33.333 8.34 0.00 39.78 2.94
781 835 7.475299 TCCCAACTTATAAATTCCAAGTTCCT 58.525 34.615 8.34 0.00 39.78 3.36
782 836 7.712204 TCCCAACTTATAAATTCCAAGTTCC 57.288 36.000 8.34 0.00 39.78 3.62
816 870 9.612620 CATGTTTGGTTCATAAGTCTTAAAGAC 57.387 33.333 0.00 0.00 45.38 3.01
817 871 8.792633 CCATGTTTGGTTCATAAGTCTTAAAGA 58.207 33.333 0.00 0.00 38.30 2.52
818 872 8.970691 CCATGTTTGGTTCATAAGTCTTAAAG 57.029 34.615 0.00 0.00 38.30 1.85
835 889 4.582701 TTGCCAACTAAGACCATGTTTG 57.417 40.909 0.00 0.00 0.00 2.93
836 890 5.540911 CATTTGCCAACTAAGACCATGTTT 58.459 37.500 0.00 0.00 0.00 2.83
837 891 4.561326 GCATTTGCCAACTAAGACCATGTT 60.561 41.667 0.00 0.00 34.31 2.71
838 892 3.056607 GCATTTGCCAACTAAGACCATGT 60.057 43.478 0.00 0.00 34.31 3.21
839 893 3.056678 TGCATTTGCCAACTAAGACCATG 60.057 43.478 0.00 0.00 41.18 3.66
840 894 3.164268 TGCATTTGCCAACTAAGACCAT 58.836 40.909 0.00 0.00 41.18 3.55
841 895 2.591923 TGCATTTGCCAACTAAGACCA 58.408 42.857 0.00 0.00 41.18 4.02
842 896 3.578688 CTTGCATTTGCCAACTAAGACC 58.421 45.455 0.00 0.00 41.18 3.85
843 897 2.989166 GCTTGCATTTGCCAACTAAGAC 59.011 45.455 0.00 0.00 41.18 3.01
844 898 2.892852 AGCTTGCATTTGCCAACTAAGA 59.107 40.909 0.00 0.00 41.18 2.10
845 899 3.308438 AGCTTGCATTTGCCAACTAAG 57.692 42.857 0.00 0.00 41.18 2.18
897 951 1.137086 ACTGTACTCTATTGGCGCAGG 59.863 52.381 10.83 0.00 0.00 4.85
954 1312 3.146828 GCCCCTTGGAGTTGGTGGT 62.147 63.158 0.00 0.00 0.00 4.16
995 1361 1.787057 ATCCGACGACGCCATCTCTC 61.787 60.000 0.64 0.00 38.29 3.20
1270 1648 1.816224 GCCGTGGAAATACACAACCAT 59.184 47.619 0.00 0.00 41.38 3.55
1278 1656 3.569690 CCGCCGCCGTGGAAATAC 61.570 66.667 0.88 0.00 42.83 1.89
1422 1800 3.885521 GCCTCCCCGTCGTCGTAG 61.886 72.222 0.71 0.00 35.01 3.51
2095 2473 6.348540 GCTCGAAGAATCAACACTTACCATTT 60.349 38.462 0.00 0.00 34.09 2.32
2096 2474 5.122396 GCTCGAAGAATCAACACTTACCATT 59.878 40.000 0.00 0.00 34.09 3.16
2097 2475 4.631813 GCTCGAAGAATCAACACTTACCAT 59.368 41.667 0.00 0.00 34.09 3.55
2128 2508 0.593008 TCAAGTTCCGTCGTCACACG 60.593 55.000 0.00 0.00 44.19 4.49
2191 2576 2.203470 TGCAATCAGCCAGACAATCA 57.797 45.000 0.00 0.00 44.83 2.57
2192 2577 3.444916 CAATGCAATCAGCCAGACAATC 58.555 45.455 0.00 0.00 44.83 2.67
2193 2578 2.418197 GCAATGCAATCAGCCAGACAAT 60.418 45.455 0.00 0.00 44.83 2.71
2194 2579 1.067425 GCAATGCAATCAGCCAGACAA 60.067 47.619 0.00 0.00 44.83 3.18
2195 2580 0.528924 GCAATGCAATCAGCCAGACA 59.471 50.000 0.00 0.00 44.83 3.41
2196 2581 0.528924 TGCAATGCAATCAGCCAGAC 59.471 50.000 5.01 0.00 44.83 3.51
2197 2582 1.136110 CATGCAATGCAATCAGCCAGA 59.864 47.619 13.45 0.00 43.62 3.86
2198 2583 1.570813 CATGCAATGCAATCAGCCAG 58.429 50.000 13.45 0.00 43.62 4.85
2201 2586 0.461163 TGCCATGCAATGCAATCAGC 60.461 50.000 13.45 13.11 44.97 4.26
2210 2595 3.069946 CACCCCGTGCCATGCAAT 61.070 61.111 0.00 0.00 41.47 3.56
2253 2638 5.012893 GTCCAATTCCCTGTTTCTCAGAAT 58.987 41.667 0.00 0.00 46.27 2.40
2357 2757 2.925170 AACCTCTCGTGCCTGGCT 60.925 61.111 21.03 0.00 0.00 4.75
2390 2790 3.011818 TCGTCGCTCCATTACTGTCTAA 58.988 45.455 0.00 0.00 0.00 2.10
2391 2791 2.353889 GTCGTCGCTCCATTACTGTCTA 59.646 50.000 0.00 0.00 0.00 2.59
2490 2890 4.285020 TCAGATATTCCAGCAGAGACTGT 58.715 43.478 0.00 0.00 35.83 3.55
2533 2933 0.689412 TCCGGCTGGATATGGTGTGA 60.689 55.000 11.27 0.00 40.17 3.58
2922 3326 0.108585 GGCCACCTTCAGTTCAGTCA 59.891 55.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.