Multiple sequence alignment - TraesCS2D01G180500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G180500
chr2D
100.000
4089
0
0
1
4089
125263904
125267992
0.000000e+00
7552
1
TraesCS2D01G180500
chr2A
89.346
2140
106
44
1395
3500
131314631
131316682
0.000000e+00
2577
2
TraesCS2D01G180500
chr2A
87.016
1471
108
31
1
1411
131313170
131314617
0.000000e+00
1581
3
TraesCS2D01G180500
chr2B
91.574
1709
72
27
1900
3567
178162254
178163931
0.000000e+00
2292
4
TraesCS2D01G180500
chr2B
90.352
1337
75
23
590
1903
178160658
178161963
0.000000e+00
1705
5
TraesCS2D01G180500
chr2B
92.810
612
27
9
1
603
178160028
178160631
0.000000e+00
870
6
TraesCS2D01G180500
chr2B
88.000
525
43
10
3583
4089
423339838
423339316
1.630000e-168
603
7
TraesCS2D01G180500
chr3D
90.164
488
46
2
3603
4089
40549412
40548926
5.770000e-178
634
8
TraesCS2D01G180500
chr3D
88.340
506
54
5
3587
4089
6521412
6521915
1.630000e-168
603
9
TraesCS2D01G180500
chr3D
91.176
442
37
2
3649
4089
602280866
602281306
2.100000e-167
599
10
TraesCS2D01G180500
chr7D
89.587
509
37
4
3596
4089
170285845
170285338
2.070000e-177
632
11
TraesCS2D01G180500
chr1D
91.892
444
33
3
3647
4089
33841615
33842056
5.810000e-173
617
12
TraesCS2D01G180500
chr6D
91.441
444
36
2
3647
4089
266767709
266767267
3.490000e-170
608
13
TraesCS2D01G180500
chr5D
90.991
444
37
3
3647
4089
480853064
480852623
2.720000e-166
595
14
TraesCS2D01G180500
chrUn
87.702
496
57
4
3595
4089
63530125
63529633
3.540000e-160
575
15
TraesCS2D01G180500
chrUn
87.702
496
57
4
3595
4089
283299601
283300093
3.540000e-160
575
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G180500
chr2D
125263904
125267992
4088
False
7552.000000
7552
100.000000
1
4089
1
chr2D.!!$F1
4088
1
TraesCS2D01G180500
chr2A
131313170
131316682
3512
False
2079.000000
2577
88.181000
1
3500
2
chr2A.!!$F1
3499
2
TraesCS2D01G180500
chr2B
178160028
178163931
3903
False
1622.333333
2292
91.578667
1
3567
3
chr2B.!!$F1
3566
3
TraesCS2D01G180500
chr2B
423339316
423339838
522
True
603.000000
603
88.000000
3583
4089
1
chr2B.!!$R1
506
4
TraesCS2D01G180500
chr3D
6521412
6521915
503
False
603.000000
603
88.340000
3587
4089
1
chr3D.!!$F1
502
5
TraesCS2D01G180500
chr7D
170285338
170285845
507
True
632.000000
632
89.587000
3596
4089
1
chr7D.!!$R1
493
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
931
1011
0.106217
CCTCCTCCACCTCTCTCCTC
60.106
65.0
0.00
0.0
0.0
3.71
F
1048
1148
0.107752
CCTGGCCTGCTTCTCTTCTC
60.108
60.0
3.32
0.0
0.0
2.87
F
2117
2572
0.108945
CTTAACTCCCGTCCGTCACC
60.109
60.0
0.00
0.0
0.0
4.02
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2073
2525
0.250234
TTGGATCTTGCAGAGGACCG
59.750
55.0
0.00
0.0
0.00
4.79
R
2524
2995
0.322906
CCTTGGGCTTCTCCTTGTCC
60.323
60.0
0.00
0.0
34.39
4.02
R
3767
4326
0.245539
CAACCAAGGAGGCAATGCTG
59.754
55.0
4.82
0.0
43.14
4.41
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
80
81
0.106894
CCCTACGCAGAGATTTCCCC
59.893
60.000
0.00
0.00
0.00
4.81
136
137
3.548306
CTGCAGCACCAGAGCACCT
62.548
63.158
0.00
0.00
34.77
4.00
182
183
0.318275
TGAAATGTCGCGCCCAAAAC
60.318
50.000
0.00
0.00
0.00
2.43
231
233
1.318158
GCTCCAGCCACCTCCATTTG
61.318
60.000
0.00
0.00
34.31
2.32
246
248
5.499139
TCCATTTGTCTATCGGCATTTTC
57.501
39.130
0.00
0.00
0.00
2.29
247
249
4.035091
TCCATTTGTCTATCGGCATTTTCG
59.965
41.667
0.00
0.00
0.00
3.46
250
252
1.295792
GTCTATCGGCATTTTCGGCA
58.704
50.000
0.00
0.00
0.00
5.69
253
255
1.003545
CTATCGGCATTTTCGGCACAG
60.004
52.381
0.00
0.00
0.00
3.66
256
258
0.318614
CGGCATTTTCGGCACAGTTT
60.319
50.000
0.00
0.00
0.00
2.66
461
478
1.657181
GACAACAAAACGCAGCCCG
60.657
57.895
0.00
0.00
44.21
6.13
481
498
2.888594
GCATCACTAGCGGTTCACTTA
58.111
47.619
0.00
0.00
0.00
2.24
552
575
2.287308
GGAGCGTAGTCAGTATCAGCAG
60.287
54.545
0.00
0.00
0.00
4.24
569
592
7.592885
ATCAGCAGTATTATGAATGCCTTTT
57.407
32.000
0.00
0.00
39.51
2.27
570
593
6.798482
TCAGCAGTATTATGAATGCCTTTTG
58.202
36.000
0.00
0.00
39.51
2.44
615
680
6.317140
GTGCTCACCATTTATCATTTCTCTGA
59.683
38.462
0.00
0.00
0.00
3.27
711
779
1.982395
CAGCCCACCGACTGGACTA
60.982
63.158
0.84
0.00
43.95
2.59
712
780
1.682684
AGCCCACCGACTGGACTAG
60.683
63.158
0.84
0.00
43.95
2.57
720
790
1.066858
CCGACTGGACTAGCAATGTGT
60.067
52.381
0.00
0.00
37.49
3.72
731
801
4.862574
ACTAGCAATGTGTGTGTATGTACG
59.137
41.667
0.00
0.00
0.00
3.67
884
964
0.108138
CCACCACCGGTCTTCTCATC
60.108
60.000
2.59
0.00
31.02
2.92
885
965
0.458543
CACCACCGGTCTTCTCATCG
60.459
60.000
2.59
0.00
31.02
3.84
886
966
1.519455
CCACCGGTCTTCTCATCGC
60.519
63.158
2.59
0.00
0.00
4.58
887
967
1.519455
CACCGGTCTTCTCATCGCC
60.519
63.158
2.59
0.00
0.00
5.54
888
968
2.278857
CCGGTCTTCTCATCGCCG
60.279
66.667
0.00
0.00
41.82
6.46
889
969
2.956964
CGGTCTTCTCATCGCCGC
60.957
66.667
0.00
0.00
35.90
6.53
890
970
2.184322
GGTCTTCTCATCGCCGCA
59.816
61.111
0.00
0.00
0.00
5.69
891
971
1.227380
GGTCTTCTCATCGCCGCAT
60.227
57.895
0.00
0.00
0.00
4.73
920
1000
2.171840
CTTCTTCTTCGTCCTCCTCCA
58.828
52.381
0.00
0.00
0.00
3.86
929
1009
0.396556
GTCCTCCTCCACCTCTCTCC
60.397
65.000
0.00
0.00
0.00
3.71
930
1010
0.553862
TCCTCCTCCACCTCTCTCCT
60.554
60.000
0.00
0.00
0.00
3.69
931
1011
0.106217
CCTCCTCCACCTCTCTCCTC
60.106
65.000
0.00
0.00
0.00
3.71
973
1073
1.216710
CGCTCCTCTGAAGGTGACC
59.783
63.158
0.00
0.00
43.82
4.02
1044
1144
3.726144
GGCCTGGCCTGCTTCTCT
61.726
66.667
30.42
0.00
46.69
3.10
1045
1145
2.354343
GCCTGGCCTGCTTCTCTT
59.646
61.111
7.66
0.00
0.00
2.85
1046
1146
1.748500
GCCTGGCCTGCTTCTCTTC
60.749
63.158
7.66
0.00
0.00
2.87
1047
1147
1.989620
CCTGGCCTGCTTCTCTTCT
59.010
57.895
3.32
0.00
0.00
2.85
1048
1148
0.107752
CCTGGCCTGCTTCTCTTCTC
60.108
60.000
3.32
0.00
0.00
2.87
1060
1160
0.537653
CTCTTCTCCCCGGTTTCCTC
59.462
60.000
0.00
0.00
0.00
3.71
1123
1228
2.558821
CGCAAATTTCGTCCGGCA
59.441
55.556
0.00
0.00
0.00
5.69
1171
1276
4.571366
AGGCCCTCTTCCCTAGTTTATA
57.429
45.455
0.00
0.00
0.00
0.98
1172
1277
5.107979
AGGCCCTCTTCCCTAGTTTATAT
57.892
43.478
0.00
0.00
0.00
0.86
1173
1278
4.846940
AGGCCCTCTTCCCTAGTTTATATG
59.153
45.833
0.00
0.00
0.00
1.78
1174
1279
4.565861
GGCCCTCTTCCCTAGTTTATATGC
60.566
50.000
0.00
0.00
0.00
3.14
1175
1280
4.565861
GCCCTCTTCCCTAGTTTATATGCC
60.566
50.000
0.00
0.00
0.00
4.40
1176
1281
4.597507
CCCTCTTCCCTAGTTTATATGCCA
59.402
45.833
0.00
0.00
0.00
4.92
1182
1287
9.111519
TCTTCCCTAGTTTATATGCCATTGATA
57.888
33.333
0.00
0.00
0.00
2.15
1190
1295
9.578576
AGTTTATATGCCATTGATATGTGTTCT
57.421
29.630
0.00
0.00
0.00
3.01
1203
1308
7.568349
TGATATGTGTTCTGCTTCTCCTTTAT
58.432
34.615
0.00
0.00
0.00
1.40
1245
1350
0.737715
GCAACGAAGCTGATCTCGGT
60.738
55.000
10.09
0.13
0.00
4.69
1269
1374
2.285083
TCTTGTCCAAACCAACTGTCG
58.715
47.619
0.00
0.00
0.00
4.35
1317
1427
2.547798
GACGACGCCACGTTTTCC
59.452
61.111
0.00
0.00
46.52
3.13
1324
1434
0.941542
CGCCACGTTTTCCTCTGAAA
59.058
50.000
0.00
0.00
38.69
2.69
1418
1558
3.057547
CTCTCGGGCTCTGACCACG
62.058
68.421
0.00
0.00
0.00
4.94
1425
1565
1.536943
GGCTCTGACCACGAACTCCT
61.537
60.000
0.00
0.00
0.00
3.69
1430
1570
0.469331
TGACCACGAACTCCTGTCCT
60.469
55.000
0.00
0.00
0.00
3.85
1442
1582
3.260884
ACTCCTGTCCTTATTTTCTGCGA
59.739
43.478
0.00
0.00
0.00
5.10
1477
1617
0.536460
TCCTTTTCACCCACCGCTTC
60.536
55.000
0.00
0.00
0.00
3.86
1568
1708
2.494073
TGGAAAACGAGCACAAAAACCT
59.506
40.909
0.00
0.00
0.00
3.50
1572
1712
1.021968
ACGAGCACAAAAACCTGTCC
58.978
50.000
0.00
0.00
0.00
4.02
1588
1728
9.454859
AAAACCTGTCCTTTTCTCATAATAGAG
57.545
33.333
0.00
0.00
36.97
2.43
1613
1753
5.003402
GTGTTTGTTTCACATTTCAGTGTCG
59.997
40.000
0.00
0.00
40.37
4.35
1683
1823
5.545063
TTCAGTGTTAGGACAGTTCATGA
57.455
39.130
0.00
0.00
37.33
3.07
1684
1824
5.139435
TCAGTGTTAGGACAGTTCATGAG
57.861
43.478
0.00
0.00
37.33
2.90
1716
1859
4.214758
ACCGGTAAACTGTAACAAGCATTC
59.785
41.667
4.49
0.00
0.00
2.67
1720
1863
6.146510
CGGTAAACTGTAACAAGCATTCAGTA
59.853
38.462
0.00
0.00
38.21
2.74
1764
1914
1.098050
AACGCCATGGCTGAAGAATC
58.902
50.000
33.07
2.52
39.32
2.52
1767
1917
0.749454
GCCATGGCTGAAGAATCGGT
60.749
55.000
29.98
0.00
38.26
4.69
1768
1918
1.019673
CCATGGCTGAAGAATCGGTG
58.980
55.000
0.00
0.00
34.20
4.94
1769
1919
1.407299
CCATGGCTGAAGAATCGGTGA
60.407
52.381
0.00
0.00
34.20
4.02
1770
1920
2.569059
CATGGCTGAAGAATCGGTGAT
58.431
47.619
0.00
0.00
34.20
3.06
1779
1929
3.685139
AGAATCGGTGATGACAGTTGT
57.315
42.857
0.00
0.00
0.00
3.32
1793
1943
6.861065
TGACAGTTGTTTCCTTTCTCATAC
57.139
37.500
0.00
0.00
0.00
2.39
1794
1944
6.591935
TGACAGTTGTTTCCTTTCTCATACT
58.408
36.000
0.00
0.00
0.00
2.12
1795
1945
7.732025
TGACAGTTGTTTCCTTTCTCATACTA
58.268
34.615
0.00
0.00
0.00
1.82
1826
1977
4.457834
AGAGTTTCCGAGTGTAATCTGG
57.542
45.455
0.00
0.00
0.00
3.86
1833
1984
2.632377
CGAGTGTAATCTGGGCATGTT
58.368
47.619
0.00
0.00
0.00
2.71
1844
1995
1.977854
TGGGCATGTTAGTGACAGAGT
59.022
47.619
0.00
0.00
42.62
3.24
1886
2037
5.654650
AGGTACAGTATATAGCTCATCCTGC
59.345
44.000
0.00
0.00
0.00
4.85
1937
2389
7.424803
TGAATTAACAATTGTCAAGTGTGAGG
58.575
34.615
18.57
0.00
38.99
3.86
1958
2410
3.265791
GCTCACACCTGGATCTACTTTG
58.734
50.000
0.00
0.00
0.00
2.77
1965
2417
7.618117
TCACACCTGGATCTACTTTGAATACTA
59.382
37.037
0.00
0.00
0.00
1.82
1966
2418
7.707035
CACACCTGGATCTACTTTGAATACTAC
59.293
40.741
0.00
0.00
0.00
2.73
1967
2419
7.620094
ACACCTGGATCTACTTTGAATACTACT
59.380
37.037
0.00
0.00
0.00
2.57
2073
2525
3.551863
CGATGCTACAGGAAGATGAGGAC
60.552
52.174
0.00
0.00
0.00
3.85
2117
2572
0.108945
CTTAACTCCCGTCCGTCACC
60.109
60.000
0.00
0.00
0.00
4.02
2118
2573
0.827089
TTAACTCCCGTCCGTCACCA
60.827
55.000
0.00
0.00
0.00
4.17
2140
2595
0.454600
CAGTCAATCACCCATGCAGC
59.545
55.000
0.00
0.00
0.00
5.25
2143
2598
0.745486
TCAATCACCCATGCAGCGAG
60.745
55.000
0.00
0.00
0.00
5.03
2208
2670
2.931649
AGGTTACGGTGGGTGGGG
60.932
66.667
0.00
0.00
0.00
4.96
2243
2705
3.635191
TGGGCTGACCGTGCATGA
61.635
61.111
7.72
0.00
44.64
3.07
2245
2707
1.750399
GGGCTGACCGTGCATGAAT
60.750
57.895
7.72
0.00
36.48
2.57
2246
2708
1.315257
GGGCTGACCGTGCATGAATT
61.315
55.000
7.72
0.00
36.48
2.17
2247
2709
0.527565
GGCTGACCGTGCATGAATTT
59.472
50.000
7.72
0.00
0.00
1.82
2260
2722
4.755629
TGCATGAATTTTGGATTGTGTTGG
59.244
37.500
0.00
0.00
0.00
3.77
2395
2857
1.673168
GGGTGATCAAGGAGATGCAC
58.327
55.000
0.00
0.00
37.00
4.57
2401
2863
1.795768
TCAAGGAGATGCACGTCAAC
58.204
50.000
0.00
0.00
0.00
3.18
2406
2868
1.959899
GAGATGCACGTCAACGGCAG
61.960
60.000
18.52
6.30
44.19
4.85
2510
2981
3.068881
CGGAGAAGCCCAAGGACA
58.931
61.111
0.00
0.00
0.00
4.02
2511
2982
1.078848
CGGAGAAGCCCAAGGACAG
60.079
63.158
0.00
0.00
0.00
3.51
2512
2983
1.377856
GGAGAAGCCCAAGGACAGC
60.378
63.158
0.00
0.00
0.00
4.40
2513
2984
1.743252
GAGAAGCCCAAGGACAGCG
60.743
63.158
0.00
0.00
0.00
5.18
2514
2985
2.747855
GAAGCCCAAGGACAGCGG
60.748
66.667
0.00
0.00
0.00
5.52
2520
2991
4.697756
CAAGGACAGCGGCGGGAA
62.698
66.667
9.78
0.00
0.00
3.97
2521
2992
4.394712
AAGGACAGCGGCGGGAAG
62.395
66.667
9.78
0.00
0.00
3.46
2532
3003
3.702048
CGGGAAGGCGGACAAGGA
61.702
66.667
0.00
0.00
0.00
3.36
2533
3004
2.269241
GGGAAGGCGGACAAGGAG
59.731
66.667
0.00
0.00
0.00
3.69
2534
3005
2.291043
GGGAAGGCGGACAAGGAGA
61.291
63.158
0.00
0.00
0.00
3.71
2535
3006
1.677552
GGAAGGCGGACAAGGAGAA
59.322
57.895
0.00
0.00
0.00
2.87
2536
3007
0.391793
GGAAGGCGGACAAGGAGAAG
60.392
60.000
0.00
0.00
0.00
2.85
2537
3008
1.003233
AAGGCGGACAAGGAGAAGC
60.003
57.895
0.00
0.00
0.00
3.86
2538
3009
2.436824
GGCGGACAAGGAGAAGCC
60.437
66.667
0.00
0.00
37.61
4.35
2539
3010
2.436824
GCGGACAAGGAGAAGCCC
60.437
66.667
0.00
0.00
37.37
5.19
2540
3011
3.068881
CGGACAAGGAGAAGCCCA
58.931
61.111
0.00
0.00
37.37
5.36
2541
3012
1.374947
CGGACAAGGAGAAGCCCAA
59.625
57.895
0.00
0.00
37.37
4.12
2542
3013
0.674895
CGGACAAGGAGAAGCCCAAG
60.675
60.000
0.00
0.00
37.37
3.61
2543
3014
0.322906
GGACAAGGAGAAGCCCAAGG
60.323
60.000
0.00
0.00
37.37
3.61
2544
3015
0.693049
GACAAGGAGAAGCCCAAGGA
59.307
55.000
0.00
0.00
37.37
3.36
2545
3016
1.283321
GACAAGGAGAAGCCCAAGGAT
59.717
52.381
0.00
0.00
37.37
3.24
2737
3238
2.989824
AAGCAGGCCAAGCAGCAG
60.990
61.111
20.51
0.00
34.46
4.24
2740
3241
3.749064
CAGGCCAAGCAGCAGCAG
61.749
66.667
5.01
0.00
45.49
4.24
3129
3663
1.302285
CAGGGGCAGAGCAATCAGT
59.698
57.895
0.00
0.00
0.00
3.41
3136
3670
2.630158
GCAGAGCAATCAGTCATCAGT
58.370
47.619
0.00
0.00
0.00
3.41
3324
3863
5.009710
GCCTAGCTTGTTTCTTTAGTTGGTT
59.990
40.000
0.00
0.00
0.00
3.67
3325
3864
6.206048
GCCTAGCTTGTTTCTTTAGTTGGTTA
59.794
38.462
0.00
0.00
0.00
2.85
3374
3914
6.349300
ACCAGTAATTAAGCACACTCCATAG
58.651
40.000
0.00
0.00
0.00
2.23
3383
3923
5.649782
AGCACACTCCATAGAAAATTTGG
57.350
39.130
0.00
0.00
0.00
3.28
3384
3924
4.463891
AGCACACTCCATAGAAAATTTGGG
59.536
41.667
0.00
0.00
0.00
4.12
3386
3926
3.769300
ACACTCCATAGAAAATTTGGGGC
59.231
43.478
0.00
0.00
34.12
5.80
3388
3928
3.287222
CTCCATAGAAAATTTGGGGCGA
58.713
45.455
0.00
0.00
0.00
5.54
3460
4003
4.295870
GAACATGCGATGATCATTTGCAT
58.704
39.130
29.30
29.30
41.03
3.96
3500
4043
2.162319
TGCTATGAACACTCGCACAA
57.838
45.000
0.00
0.00
0.00
3.33
3501
4044
1.798223
TGCTATGAACACTCGCACAAC
59.202
47.619
0.00
0.00
0.00
3.32
3502
4045
2.069273
GCTATGAACACTCGCACAACT
58.931
47.619
0.00
0.00
0.00
3.16
3503
4046
2.092838
GCTATGAACACTCGCACAACTC
59.907
50.000
0.00
0.00
0.00
3.01
3504
4047
1.512926
ATGAACACTCGCACAACTCC
58.487
50.000
0.00
0.00
0.00
3.85
3505
4048
0.464036
TGAACACTCGCACAACTCCT
59.536
50.000
0.00
0.00
0.00
3.69
3506
4049
1.140816
GAACACTCGCACAACTCCTC
58.859
55.000
0.00
0.00
0.00
3.71
3507
4050
0.597637
AACACTCGCACAACTCCTCG
60.598
55.000
0.00
0.00
0.00
4.63
3508
4051
2.049063
ACTCGCACAACTCCTCGC
60.049
61.111
0.00
0.00
0.00
5.03
3509
4052
2.049156
CTCGCACAACTCCTCGCA
60.049
61.111
0.00
0.00
0.00
5.10
3510
4053
2.355837
TCGCACAACTCCTCGCAC
60.356
61.111
0.00
0.00
0.00
5.34
3511
4054
2.661537
CGCACAACTCCTCGCACA
60.662
61.111
0.00
0.00
0.00
4.57
3512
4055
2.939022
GCACAACTCCTCGCACAC
59.061
61.111
0.00
0.00
0.00
3.82
3543
4086
0.389166
GGGCTCTGTTCTCACTCGTG
60.389
60.000
0.00
0.00
0.00
4.35
3545
4088
1.667467
GGCTCTGTTCTCACTCGTGAC
60.667
57.143
0.00
0.00
35.46
3.67
3559
4102
6.654746
TCACTCGTGACCTAAGAGCATCTAC
61.655
48.000
0.00
0.00
38.74
2.59
3560
4103
8.971827
TCACTCGTGACCTAAGAGCATCTACA
62.972
46.154
0.00
0.00
38.74
2.74
3568
4111
3.760693
GAGCATCTACAGCCGGAAA
57.239
52.632
5.05
0.00
0.00
3.13
3569
4112
2.246719
GAGCATCTACAGCCGGAAAT
57.753
50.000
5.05
0.00
0.00
2.17
3570
4113
2.139118
GAGCATCTACAGCCGGAAATC
58.861
52.381
5.05
0.00
0.00
2.17
3571
4114
1.202698
AGCATCTACAGCCGGAAATCC
60.203
52.381
5.05
0.00
0.00
3.01
3582
4125
3.970205
GGAAATCCGGTCCCTCAAA
57.030
52.632
0.00
0.00
0.00
2.69
3583
4126
1.460504
GGAAATCCGGTCCCTCAAAC
58.539
55.000
0.00
0.00
0.00
2.93
3584
4127
1.084289
GAAATCCGGTCCCTCAAACG
58.916
55.000
0.00
0.00
0.00
3.60
3585
4128
0.958876
AAATCCGGTCCCTCAAACGC
60.959
55.000
0.00
0.00
0.00
4.84
3586
4129
2.814913
AATCCGGTCCCTCAAACGCC
62.815
60.000
0.00
0.00
0.00
5.68
3593
4136
3.192230
CCTCAAACGCCGCGCATA
61.192
61.111
13.88
0.00
0.00
3.14
3649
4192
7.649533
TTTCTTTCATGCATCCACATATCTT
57.350
32.000
0.00
0.00
0.00
2.40
3695
4252
2.159667
CGATCATGCAACACAATGTCGT
60.160
45.455
0.00
0.00
0.00
4.34
3699
4256
1.854227
TGCAACACAATGTCGTACGA
58.146
45.000
15.28
15.28
0.00
3.43
3706
4263
7.010645
TGCAACACAATGTCGTACGATAAATAT
59.989
33.333
22.57
8.44
0.00
1.28
3731
4288
7.482474
TCAATTGTTGGTATCAAGCATACATG
58.518
34.615
5.13
0.00
39.50
3.21
3767
4326
7.728847
AAATTTATTTGAAGTGCCAAACTCC
57.271
32.000
0.00
0.00
38.56
3.85
3792
4351
0.899717
TGCCTCCTTGGTTGCCATTC
60.900
55.000
0.00
0.00
38.35
2.67
3798
4357
2.181975
CCTTGGTTGCCATTCTGGATT
58.818
47.619
0.00
0.00
40.96
3.01
3849
4408
1.499056
CGTGTGCACCTGCTGATTC
59.501
57.895
15.69
0.00
42.66
2.52
3895
4457
3.199880
AGTTCATAAGCTAGCCGCATT
57.800
42.857
12.13
1.15
42.61
3.56
3940
4502
0.323629
TCTCCGGGTGCTTCGAAATT
59.676
50.000
0.00
0.00
0.00
1.82
3941
4503
0.447801
CTCCGGGTGCTTCGAAATTG
59.552
55.000
0.00
0.00
0.00
2.32
3963
4525
1.341976
GGGTTTGGGCTACACCATCAT
60.342
52.381
8.51
0.00
40.91
2.45
3986
4548
7.397192
TCATCCTCATCCTCGACAATCATATTA
59.603
37.037
0.00
0.00
0.00
0.98
3990
4552
5.807011
TCATCCTCGACAATCATATTATGCG
59.193
40.000
0.00
0.00
0.00
4.73
4016
4578
2.854963
ACACAACATGTCATCAGCTGT
58.145
42.857
14.67
0.00
36.54
4.40
4027
4589
4.398988
TGTCATCAGCTGTCACAAAGTTTT
59.601
37.500
14.67
0.00
0.00
2.43
4069
4631
1.522668
CTCCGCACAATTCCTCAACA
58.477
50.000
0.00
0.00
0.00
3.33
4075
4637
3.311966
GCACAATTCCTCAACAAGCTTC
58.688
45.455
0.00
0.00
0.00
3.86
4083
4645
2.295349
CCTCAACAAGCTTCAAGCACAT
59.705
45.455
13.10
0.00
45.56
3.21
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
8
9
2.405618
ATGGGCTGTAGATAGAGGCA
57.594
50.000
11.81
0.55
42.83
4.75
80
81
1.159285
TGTCTTGCTCAATTGGCTCG
58.841
50.000
16.52
9.60
0.00
5.03
182
183
2.363359
AGCAGCAAAGAAAACAAGGAGG
59.637
45.455
0.00
0.00
0.00
4.30
231
233
1.003866
GTGCCGAAAATGCCGATAGAC
60.004
52.381
0.00
0.00
39.76
2.59
246
248
4.025401
GCGGGTGAAACTGTGCCG
62.025
66.667
0.00
0.00
40.26
5.69
247
249
3.670377
GGCGGGTGAAACTGTGCC
61.670
66.667
0.00
0.00
40.02
5.01
250
252
4.636435
CCCGGCGGGTGAAACTGT
62.636
66.667
36.52
0.00
38.25
3.55
382
385
2.338015
CCAGGCATGTCAGCACCAC
61.338
63.158
0.00
0.00
35.83
4.16
461
478
1.726853
AAGTGAACCGCTAGTGATGC
58.273
50.000
4.44
0.00
0.00
3.91
481
498
0.104304
GAGTGACGTTCAGTGGTGGT
59.896
55.000
0.00
0.00
28.50
4.16
552
575
9.801873
AATACACACAAAAGGCATTCATAATAC
57.198
29.630
0.00
0.00
0.00
1.89
615
680
1.561542
CACCCAGCCCACTTCTAGAAT
59.438
52.381
5.44
0.00
0.00
2.40
711
779
2.415168
GCGTACATACACACACATTGCT
59.585
45.455
0.00
0.00
0.00
3.91
712
780
2.475519
GGCGTACATACACACACATTGC
60.476
50.000
0.00
0.00
0.00
3.56
720
790
2.009542
GCATGTGGGCGTACATACACA
61.010
52.381
13.61
13.61
46.44
3.72
884
964
2.146342
AGAAGAAATATGGATGCGGCG
58.854
47.619
0.51
0.51
0.00
6.46
885
965
3.817647
AGAAGAAGAAATATGGATGCGGC
59.182
43.478
0.00
0.00
0.00
6.53
886
966
5.333645
CGAAGAAGAAGAAATATGGATGCGG
60.334
44.000
0.00
0.00
0.00
5.69
887
967
5.235186
ACGAAGAAGAAGAAATATGGATGCG
59.765
40.000
0.00
0.00
0.00
4.73
888
968
6.293135
GGACGAAGAAGAAGAAATATGGATGC
60.293
42.308
0.00
0.00
0.00
3.91
889
969
6.989169
AGGACGAAGAAGAAGAAATATGGATG
59.011
38.462
0.00
0.00
0.00
3.51
890
970
7.130681
AGGACGAAGAAGAAGAAATATGGAT
57.869
36.000
0.00
0.00
0.00
3.41
891
971
6.407074
GGAGGACGAAGAAGAAGAAATATGGA
60.407
42.308
0.00
0.00
0.00
3.41
929
1009
1.070275
TGTGCTGTGTGCTCTGGAG
59.930
57.895
0.00
0.00
43.37
3.86
930
1010
1.227645
GTGTGCTGTGTGCTCTGGA
60.228
57.895
0.00
0.00
43.37
3.86
931
1011
1.504647
CTGTGTGCTGTGTGCTCTGG
61.505
60.000
0.00
0.00
43.37
3.86
955
1047
1.216710
GGTCACCTTCAGAGGAGCG
59.783
63.158
0.00
0.00
46.74
5.03
1044
1144
0.908180
GAGGAGGAAACCGGGGAGAA
60.908
60.000
6.32
0.00
34.73
2.87
1045
1145
1.305887
GAGGAGGAAACCGGGGAGA
60.306
63.158
6.32
0.00
34.73
3.71
1046
1146
2.722201
CGAGGAGGAAACCGGGGAG
61.722
68.421
6.32
0.00
34.73
4.30
1047
1147
2.525284
ATCGAGGAGGAAACCGGGGA
62.525
60.000
6.32
0.00
34.73
4.81
1048
1148
1.623542
AATCGAGGAGGAAACCGGGG
61.624
60.000
6.32
0.00
34.73
5.73
1060
1160
2.856346
CGCACGCGGTAAATCGAGG
61.856
63.158
12.47
0.00
34.37
4.63
1171
1276
4.212716
AGCAGAACACATATCAATGGCAT
58.787
39.130
0.00
0.00
37.43
4.40
1172
1277
3.623703
AGCAGAACACATATCAATGGCA
58.376
40.909
0.00
0.00
37.43
4.92
1173
1278
4.337555
AGAAGCAGAACACATATCAATGGC
59.662
41.667
0.00
0.00
37.43
4.40
1174
1279
5.008415
GGAGAAGCAGAACACATATCAATGG
59.992
44.000
0.00
0.00
37.43
3.16
1175
1280
5.821470
AGGAGAAGCAGAACACATATCAATG
59.179
40.000
0.00
0.00
39.17
2.82
1176
1281
5.999044
AGGAGAAGCAGAACACATATCAAT
58.001
37.500
0.00
0.00
0.00
2.57
1182
1287
5.189180
GGATAAAGGAGAAGCAGAACACAT
58.811
41.667
0.00
0.00
0.00
3.21
1190
1295
4.532126
TGAAGAGTGGATAAAGGAGAAGCA
59.468
41.667
0.00
0.00
0.00
3.91
1203
1308
4.039245
CCAAGTGAACTAGTGAAGAGTGGA
59.961
45.833
0.00
0.00
0.00
4.02
1245
1350
3.287222
CAGTTGGTTTGGACAAGAGGAA
58.713
45.455
0.00
0.00
0.00
3.36
1317
1427
1.202651
ACGACTTGTGGGGTTTCAGAG
60.203
52.381
0.00
0.00
0.00
3.35
1324
1434
1.342672
ACTCCAACGACTTGTGGGGT
61.343
55.000
0.00
0.00
42.62
4.95
1418
1558
4.093556
CGCAGAAAATAAGGACAGGAGTTC
59.906
45.833
0.00
0.00
0.00
3.01
1425
1565
4.265904
TCACTCGCAGAAAATAAGGACA
57.734
40.909
0.00
0.00
34.09
4.02
1430
1570
4.391830
GGTGACATCACTCGCAGAAAATAA
59.608
41.667
11.63
0.00
45.73
1.40
1442
1582
0.687354
AGGAAAGCGGTGACATCACT
59.313
50.000
11.63
0.00
45.73
3.41
1454
1594
0.313987
CGGTGGGTGAAAAGGAAAGC
59.686
55.000
0.00
0.00
0.00
3.51
1477
1617
2.099062
GCGTTGATCTTGGCAGCG
59.901
61.111
0.00
0.00
41.85
5.18
1568
1708
7.496346
ACACCTCTATTATGAGAAAAGGACA
57.504
36.000
0.00
0.00
36.23
4.02
1613
1753
4.441792
ACAAATTCAGTGGGAAAACTTGC
58.558
39.130
0.00
0.00
39.39
4.01
1683
1823
8.802267
TGTTACAGTTTACCGGTAGTATTAACT
58.198
33.333
18.66
18.66
33.96
2.24
1684
1824
8.980143
TGTTACAGTTTACCGGTAGTATTAAC
57.020
34.615
15.20
15.29
0.00
2.01
1764
1914
2.494059
AGGAAACAACTGTCATCACCG
58.506
47.619
0.00
0.00
0.00
4.94
1767
1917
5.436175
TGAGAAAGGAAACAACTGTCATCA
58.564
37.500
0.00
0.00
0.00
3.07
1768
1918
6.566197
ATGAGAAAGGAAACAACTGTCATC
57.434
37.500
0.00
0.00
0.00
2.92
1769
1919
7.227156
AGTATGAGAAAGGAAACAACTGTCAT
58.773
34.615
0.00
0.00
0.00
3.06
1770
1920
6.591935
AGTATGAGAAAGGAAACAACTGTCA
58.408
36.000
0.00
0.00
0.00
3.58
1793
1943
8.989980
ACACTCGGAAACTCTTAATTTTCTTAG
58.010
33.333
0.00
0.00
33.10
2.18
1794
1944
8.897872
ACACTCGGAAACTCTTAATTTTCTTA
57.102
30.769
0.00
0.00
33.10
2.10
1795
1945
7.803279
ACACTCGGAAACTCTTAATTTTCTT
57.197
32.000
0.00
0.00
33.10
2.52
1808
1958
2.007608
GCCCAGATTACACTCGGAAAC
58.992
52.381
0.00
0.00
0.00
2.78
1816
1967
4.332819
GTCACTAACATGCCCAGATTACAC
59.667
45.833
0.00
0.00
0.00
2.90
1826
1977
3.257393
CTCACTCTGTCACTAACATGCC
58.743
50.000
0.00
0.00
37.23
4.40
1833
1984
3.074687
AGGAAGGACTCACTCTGTCACTA
59.925
47.826
0.00
0.00
36.26
2.74
1865
2016
7.634718
AGTAGCAGGATGAGCTATATACTGTA
58.365
38.462
18.89
10.52
45.38
2.74
1886
2037
9.850198
AGAGTTAACTGTACCTAATAGGAGTAG
57.150
37.037
14.14
9.62
37.67
2.57
1937
2389
3.055819
TCAAAGTAGATCCAGGTGTGAGC
60.056
47.826
0.00
0.00
0.00
4.26
1958
2410
6.284459
AGGTAAATGCAGCTGAGTAGTATTC
58.716
40.000
20.43
0.00
0.00
1.75
1965
2417
3.423539
TGAAGGTAAATGCAGCTGAGT
57.576
42.857
20.43
0.81
0.00
3.41
1966
2418
4.978083
AATGAAGGTAAATGCAGCTGAG
57.022
40.909
20.43
0.00
0.00
3.35
1967
2419
6.350110
GGTTAAATGAAGGTAAATGCAGCTGA
60.350
38.462
20.43
2.70
0.00
4.26
2073
2525
0.250234
TTGGATCTTGCAGAGGACCG
59.750
55.000
0.00
0.00
0.00
4.79
2117
2572
2.756207
TGCATGGGTGATTGACTGATTG
59.244
45.455
0.00
0.00
0.00
2.67
2118
2573
3.021695
CTGCATGGGTGATTGACTGATT
58.978
45.455
0.00
0.00
0.00
2.57
2192
2654
4.728110
GCCCCACCCACCGTAACC
62.728
72.222
0.00
0.00
0.00
2.85
2208
2670
3.470567
CGAGGTTGACGACGCTGC
61.471
66.667
0.00
0.00
0.00
5.25
2243
2705
3.390639
TCTGCCCAACACAATCCAAAATT
59.609
39.130
0.00
0.00
0.00
1.82
2245
2707
2.102252
GTCTGCCCAACACAATCCAAAA
59.898
45.455
0.00
0.00
0.00
2.44
2246
2708
1.686052
GTCTGCCCAACACAATCCAAA
59.314
47.619
0.00
0.00
0.00
3.28
2247
2709
1.327303
GTCTGCCCAACACAATCCAA
58.673
50.000
0.00
0.00
0.00
3.53
2260
2722
4.005650
TCTTGATGTTCATCTTGTCTGCC
58.994
43.478
12.94
0.00
0.00
4.85
2338
2800
1.597854
CTTCCGGCACAGCTTGTCA
60.598
57.895
0.00
0.00
0.00
3.58
2395
2857
2.280524
TGTTCCCTGCCGTTGACG
60.281
61.111
0.00
0.00
39.44
4.35
2401
2863
2.747855
GCCTTCTGTTCCCTGCCG
60.748
66.667
0.00
0.00
0.00
5.69
2406
2868
0.955919
CTTGTCCGCCTTCTGTTCCC
60.956
60.000
0.00
0.00
0.00
3.97
2515
2986
3.665675
CTCCTTGTCCGCCTTCCCG
62.666
68.421
0.00
0.00
0.00
5.14
2516
2987
1.838073
TTCTCCTTGTCCGCCTTCCC
61.838
60.000
0.00
0.00
0.00
3.97
2517
2988
0.391793
CTTCTCCTTGTCCGCCTTCC
60.392
60.000
0.00
0.00
0.00
3.46
2518
2989
1.021920
GCTTCTCCTTGTCCGCCTTC
61.022
60.000
0.00
0.00
0.00
3.46
2519
2990
1.003233
GCTTCTCCTTGTCCGCCTT
60.003
57.895
0.00
0.00
0.00
4.35
2520
2991
2.665603
GCTTCTCCTTGTCCGCCT
59.334
61.111
0.00
0.00
0.00
5.52
2521
2992
2.436824
GGCTTCTCCTTGTCCGCC
60.437
66.667
0.00
0.00
0.00
6.13
2522
2993
2.436824
GGGCTTCTCCTTGTCCGC
60.437
66.667
0.00
0.00
34.39
5.54
2523
2994
0.674895
CTTGGGCTTCTCCTTGTCCG
60.675
60.000
0.00
0.00
34.39
4.79
2524
2995
0.322906
CCTTGGGCTTCTCCTTGTCC
60.323
60.000
0.00
0.00
34.39
4.02
2525
2996
0.693049
TCCTTGGGCTTCTCCTTGTC
59.307
55.000
0.00
0.00
34.39
3.18
2526
2997
1.005215
CATCCTTGGGCTTCTCCTTGT
59.995
52.381
0.00
0.00
34.39
3.16
2527
2998
1.684248
CCATCCTTGGGCTTCTCCTTG
60.684
57.143
0.00
0.00
39.56
3.61
2528
2999
0.627986
CCATCCTTGGGCTTCTCCTT
59.372
55.000
0.00
0.00
39.56
3.36
2529
3000
2.315443
CCATCCTTGGGCTTCTCCT
58.685
57.895
0.00
0.00
39.56
3.69
2530
3001
4.995594
CCATCCTTGGGCTTCTCC
57.004
61.111
0.00
0.00
39.56
3.71
2539
3010
4.794648
TTCCCGCCGCCATCCTTG
62.795
66.667
0.00
0.00
0.00
3.61
2540
3011
4.489771
CTTCCCGCCGCCATCCTT
62.490
66.667
0.00
0.00
0.00
3.36
2848
3361
1.064240
TCGTAGCTGTAGGACATGGGA
60.064
52.381
0.00
0.00
0.00
4.37
3114
3648
1.307097
GATGACTGATTGCTCTGCCC
58.693
55.000
0.00
0.00
0.00
5.36
3129
3663
4.465305
ACACTGATGACTGATGACTGATGA
59.535
41.667
0.00
0.00
0.00
2.92
3136
3670
3.555586
CCACACACACTGATGACTGATGA
60.556
47.826
0.00
0.00
0.00
2.92
3347
3887
6.112734
TGGAGTGTGCTTAATTACTGGTATG
58.887
40.000
0.00
0.00
0.00
2.39
3363
3903
4.381932
GCCCCAAATTTTCTATGGAGTGTG
60.382
45.833
0.00
0.00
36.27
3.82
3374
3914
2.758423
ACTACCATCGCCCCAAATTTTC
59.242
45.455
0.00
0.00
0.00
2.29
3383
3923
4.546829
TCCAAATATACTACCATCGCCC
57.453
45.455
0.00
0.00
0.00
6.13
3384
3924
4.876107
CCATCCAAATATACTACCATCGCC
59.124
45.833
0.00
0.00
0.00
5.54
3386
3926
6.310467
CGTTCCATCCAAATATACTACCATCG
59.690
42.308
0.00
0.00
0.00
3.84
3388
3928
7.016268
ACTCGTTCCATCCAAATATACTACCAT
59.984
37.037
0.00
0.00
0.00
3.55
3436
3979
3.294102
CAAATGATCATCGCATGTTCGG
58.706
45.455
9.06
0.00
32.88
4.30
3460
4003
6.124340
AGCATCACATGGATTTGATCAAGTA
58.876
36.000
8.41
0.00
32.57
2.24
3500
4043
1.014352
GTGTTTTGTGTGCGAGGAGT
58.986
50.000
0.00
0.00
0.00
3.85
3501
4044
1.003545
CTGTGTTTTGTGTGCGAGGAG
60.004
52.381
0.00
0.00
0.00
3.69
3502
4045
1.013596
CTGTGTTTTGTGTGCGAGGA
58.986
50.000
0.00
0.00
0.00
3.71
3503
4046
0.592247
GCTGTGTTTTGTGTGCGAGG
60.592
55.000
0.00
0.00
0.00
4.63
3504
4047
0.925267
CGCTGTGTTTTGTGTGCGAG
60.925
55.000
0.00
0.00
45.15
5.03
3505
4048
1.061729
CGCTGTGTTTTGTGTGCGA
59.938
52.632
0.00
0.00
45.15
5.10
3506
4049
1.938814
CCGCTGTGTTTTGTGTGCG
60.939
57.895
0.00
0.00
42.52
5.34
3507
4050
1.588667
CCCGCTGTGTTTTGTGTGC
60.589
57.895
0.00
0.00
0.00
4.57
3508
4051
1.065600
CCCCGCTGTGTTTTGTGTG
59.934
57.895
0.00
0.00
0.00
3.82
3509
4052
2.781158
GCCCCGCTGTGTTTTGTGT
61.781
57.895
0.00
0.00
0.00
3.72
3510
4053
2.027460
GCCCCGCTGTGTTTTGTG
59.973
61.111
0.00
0.00
0.00
3.33
3511
4054
2.123897
AGCCCCGCTGTGTTTTGT
60.124
55.556
0.00
0.00
37.57
2.83
3512
4055
1.898574
AGAGCCCCGCTGTGTTTTG
60.899
57.895
0.00
0.00
39.88
2.44
3543
4086
2.287909
CGGCTGTAGATGCTCTTAGGTC
60.288
54.545
0.00
0.00
0.00
3.85
3545
4088
1.000283
CCGGCTGTAGATGCTCTTAGG
60.000
57.143
0.00
0.00
0.00
2.69
3567
4110
1.376812
GCGTTTGAGGGACCGGATT
60.377
57.895
9.46
0.00
0.00
3.01
3568
4111
2.267961
GCGTTTGAGGGACCGGAT
59.732
61.111
9.46
0.00
0.00
4.18
3569
4112
4.011517
GGCGTTTGAGGGACCGGA
62.012
66.667
9.46
0.00
0.00
5.14
3576
4119
3.192230
TATGCGCGGCGTTTGAGG
61.192
61.111
24.46
0.00
0.00
3.86
3577
4120
2.021380
GTATGCGCGGCGTTTGAG
59.979
61.111
24.46
0.00
0.00
3.02
3578
4121
3.492545
GGTATGCGCGGCGTTTGA
61.493
61.111
24.46
6.13
0.00
2.69
3579
4122
4.530325
GGGTATGCGCGGCGTTTG
62.530
66.667
24.46
0.00
0.00
2.93
3623
4166
7.486647
AGATATGTGGATGCATGAAAGAAAAC
58.513
34.615
2.46
0.00
0.00
2.43
3706
4263
7.416551
CCATGTATGCTTGATACCAACAATTGA
60.417
37.037
13.59
0.00
36.79
2.57
3767
4326
0.245539
CAACCAAGGAGGCAATGCTG
59.754
55.000
4.82
0.00
43.14
4.41
3792
4351
1.741706
GTGGAGCACATGTGAATCCAG
59.258
52.381
35.38
11.89
43.75
3.86
3798
4357
2.038820
TGATCTTGTGGAGCACATGTGA
59.961
45.455
29.80
5.35
44.16
3.58
3849
4408
2.223611
GCAGATGCATCAGAATCTTCGG
59.776
50.000
27.81
1.73
38.12
4.30
3895
4457
4.662278
AGTTGAAATCCCGGAAGATCAAA
58.338
39.130
0.73
0.00
0.00
2.69
3940
4502
1.151908
GGTGTAGCCCAAACCCACA
59.848
57.895
0.00
0.00
0.00
4.17
3941
4503
0.251608
ATGGTGTAGCCCAAACCCAC
60.252
55.000
0.00
0.00
38.20
4.61
3963
4525
7.550712
CATAATATGATTGTCGAGGATGAGGA
58.449
38.462
0.00
0.00
0.00
3.71
3986
4548
5.369685
TGACATGTTGTGTTATTTCGCAT
57.630
34.783
0.00
0.00
42.36
4.73
3990
4552
6.525628
CAGCTGATGACATGTTGTGTTATTTC
59.474
38.462
8.42
0.00
42.36
2.17
4016
4578
3.948473
TGTGGGAATCGAAAACTTTGTGA
59.052
39.130
0.00
0.00
0.00
3.58
4027
4589
2.291365
CTGCAATGATGTGGGAATCGA
58.709
47.619
0.00
0.00
0.00
3.59
4064
4626
2.950975
TGATGTGCTTGAAGCTTGTTGA
59.049
40.909
18.94
0.00
42.97
3.18
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.