Multiple sequence alignment - TraesCS2D01G180400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G180400 chr2D 100.000 9071 0 0 851 9921 124882475 124873405 0.000000e+00 16752.0
1 TraesCS2D01G180400 chr2D 100.000 492 0 0 1 492 124883325 124882834 0.000000e+00 909.0
2 TraesCS2D01G180400 chr2D 88.720 656 68 6 3920 4573 236114137 236114788 0.000000e+00 797.0
3 TraesCS2D01G180400 chr2D 81.877 309 45 8 3120 3421 2259397 2259701 5.950000e-62 250.0
4 TraesCS2D01G180400 chr2D 96.552 145 2 3 4821 4962 302425529 302425385 4.630000e-58 237.0
5 TraesCS2D01G180400 chr2D 90.857 175 14 2 1645 1818 268894465 268894292 5.990000e-57 233.0
6 TraesCS2D01G180400 chr2D 90.588 170 14 2 1647 1815 512768134 512768302 3.610000e-54 224.0
7 TraesCS2D01G180400 chr2D 76.847 203 39 7 3215 3414 31670681 31670878 3.790000e-19 108.0
8 TraesCS2D01G180400 chr2D 90.541 74 4 1 9634 9704 206238520 206238593 2.950000e-15 95.3
9 TraesCS2D01G180400 chr2A 97.592 4652 71 19 4954 9581 130806376 130801742 0.000000e+00 7932.0
10 TraesCS2D01G180400 chr2A 97.277 2314 46 9 2524 4828 130808663 130806358 0.000000e+00 3908.0
11 TraesCS2D01G180400 chr2A 97.045 1692 40 5 851 2541 130810781 130809099 0.000000e+00 2839.0
12 TraesCS2D01G180400 chr2A 96.586 498 10 3 1 491 130811301 130810804 0.000000e+00 819.0
13 TraesCS2D01G180400 chr2A 90.173 173 14 3 1645 1815 317953165 317953336 1.300000e-53 222.0
14 TraesCS2D01G180400 chr2A 90.977 133 8 2 9576 9704 277141872 277141740 1.020000e-39 176.0
15 TraesCS2D01G180400 chr2A 77.301 163 34 3 2960 3122 694149277 694149118 1.060000e-14 93.5
16 TraesCS2D01G180400 chr2B 97.073 2904 64 13 851 3748 177657595 177654707 0.000000e+00 4872.0
17 TraesCS2D01G180400 chr2B 98.659 2386 25 4 4954 7335 177653472 177651090 0.000000e+00 4222.0
18 TraesCS2D01G180400 chr2B 97.790 2081 35 4 7387 9459 177651088 177649011 0.000000e+00 3578.0
19 TraesCS2D01G180400 chr2B 95.889 1119 17 5 3717 4828 177654550 177653454 0.000000e+00 1784.0
20 TraesCS2D01G180400 chr2B 97.189 498 8 4 1 492 177658105 177657608 0.000000e+00 837.0
21 TraesCS2D01G180400 chr2B 92.079 101 5 1 9721 9818 177648963 177648863 1.340000e-28 139.0
22 TraesCS2D01G180400 chr5D 90.199 653 55 8 3920 4572 271901794 271902437 0.000000e+00 843.0
23 TraesCS2D01G180400 chr5D 88.821 653 68 3 3920 4572 228478009 228477362 0.000000e+00 797.0
24 TraesCS2D01G180400 chr5D 90.116 172 15 2 1645 1815 299073411 299073581 1.300000e-53 222.0
25 TraesCS2D01G180400 chr5D 92.424 132 7 1 9576 9704 222427097 222427228 1.700000e-42 185.0
26 TraesCS2D01G180400 chr5D 86.822 129 13 2 9576 9700 498406565 498406693 3.740000e-29 141.0
27 TraesCS2D01G180400 chr5D 88.679 53 3 3 6520 6569 359051140 359051088 2.990000e-05 62.1
28 TraesCS2D01G180400 chr4D 89.205 667 65 7 3915 4579 197007413 197006752 0.000000e+00 826.0
29 TraesCS2D01G180400 chr4D 85.039 127 15 2 9578 9700 234384171 234384297 1.050000e-24 126.0
30 TraesCS2D01G180400 chr4D 78.400 125 17 7 6442 6562 30747868 30747750 1.380000e-08 73.1
31 TraesCS2D01G180400 chr4D 77.863 131 17 9 9584 9704 29657677 29657805 4.970000e-08 71.3
32 TraesCS2D01G180400 chr7D 89.587 653 63 3 3920 4572 421832665 421832018 0.000000e+00 824.0
33 TraesCS2D01G180400 chr7D 78.707 263 47 7 1945 2206 566566775 566566521 6.160000e-37 167.0
34 TraesCS2D01G180400 chr7D 84.615 143 21 1 2083 2224 19861038 19861180 3.740000e-29 141.0
35 TraesCS2D01G180400 chr7D 84.615 143 21 1 2083 2224 19924062 19924204 3.740000e-29 141.0
36 TraesCS2D01G180400 chr7D 83.810 105 15 2 2958 3061 227658247 227658144 2.280000e-16 99.0
37 TraesCS2D01G180400 chr7D 76.159 151 30 5 6349 6499 115035599 115035743 3.840000e-09 75.0
38 TraesCS2D01G180400 chr3A 88.991 654 67 3 3919 4572 51282374 51281726 0.000000e+00 804.0
39 TraesCS2D01G180400 chr3A 72.619 252 58 9 6315 6563 404557403 404557160 1.380000e-08 73.1
40 TraesCS2D01G180400 chr3A 81.928 83 14 1 6479 6561 714645368 714645287 1.790000e-07 69.4
41 TraesCS2D01G180400 chr3A 100.000 28 0 0 6537 6564 675317201 675317174 1.800000e-02 52.8
42 TraesCS2D01G180400 chr7B 88.271 665 70 6 3920 4582 685166825 685167483 0.000000e+00 789.0
43 TraesCS2D01G180400 chr7B 98.540 137 2 0 4821 4957 104069176 104069040 9.960000e-60 243.0
44 TraesCS2D01G180400 chr7B 97.842 139 3 0 4821 4959 695107126 695107264 3.580000e-59 241.0
45 TraesCS2D01G180400 chr7B 80.165 121 21 3 2958 3076 688168570 688168451 4.940000e-13 87.9
46 TraesCS2D01G180400 chr6B 98.551 138 2 0 4821 4958 48563323 48563186 2.770000e-60 244.0
47 TraesCS2D01G180400 chr6B 98.540 137 2 0 4821 4957 225541649 225541513 9.960000e-60 243.0
48 TraesCS2D01G180400 chr6B 75.524 143 32 3 2960 3099 716226288 716226430 6.430000e-07 67.6
49 TraesCS2D01G180400 chr7A 97.857 140 2 1 4821 4960 348798071 348798209 3.580000e-59 241.0
50 TraesCS2D01G180400 chr7A 95.918 147 5 1 4821 4967 353238699 353238554 4.630000e-58 237.0
51 TraesCS2D01G180400 chr5B 97.203 143 3 1 4821 4962 609875981 609875839 3.580000e-59 241.0
52 TraesCS2D01G180400 chr5B 90.152 132 10 1 9576 9704 250600899 250600768 1.710000e-37 169.0
53 TraesCS2D01G180400 chr5B 84.444 90 8 5 276 364 549002189 549002105 6.390000e-12 84.2
54 TraesCS2D01G180400 chr1B 97.842 139 3 0 4821 4959 530961378 530961240 3.580000e-59 241.0
55 TraesCS2D01G180400 chr4B 97.183 142 3 1 4821 4961 21368538 21368679 1.290000e-58 239.0
56 TraesCS2D01G180400 chr4B 97.183 142 2 1 4821 4962 171146620 171146759 1.290000e-58 239.0
57 TraesCS2D01G180400 chr4B 90.857 175 13 3 1647 1820 386210235 386210407 2.150000e-56 231.0
58 TraesCS2D01G180400 chr4B 97.436 39 0 1 2658 2696 386324773 386324736 2.310000e-06 65.8
59 TraesCS2D01G180400 chr4A 97.163 141 3 1 4821 4961 6935609 6935470 4.630000e-58 237.0
60 TraesCS2D01G180400 chr4A 85.833 120 11 4 9587 9700 624135411 624135530 1.350000e-23 122.0
61 TraesCS2D01G180400 chr1A 97.163 141 3 1 4821 4961 580496680 580496819 4.630000e-58 237.0
62 TraesCS2D01G180400 chr1A 95.270 148 5 2 4821 4966 208903824 208903971 5.990000e-57 233.0
63 TraesCS2D01G180400 chr1A 83.133 83 8 6 9628 9704 111793776 111793694 4.970000e-08 71.3
64 TraesCS2D01G180400 chr5A 89.714 175 16 2 1642 1815 271053638 271053811 1.300000e-53 222.0
65 TraesCS2D01G180400 chr5A 91.667 132 8 1 9576 9704 305089932 305089801 7.920000e-41 180.0
66 TraesCS2D01G180400 chr3D 89.266 177 15 4 1650 1824 69500433 69500607 1.680000e-52 219.0
67 TraesCS2D01G180400 chr3D 89.431 123 10 2 9581 9700 136566184 136566062 1.730000e-32 152.0
68 TraesCS2D01G180400 chrUn 93.182 132 6 1 9576 9704 17536184 17536315 3.660000e-44 191.0
69 TraesCS2D01G180400 chr6D 87.313 134 6 4 9576 9704 450138082 450138209 1.040000e-29 143.0
70 TraesCS2D01G180400 chr6D 78.070 114 19 4 6453 6563 472134451 472134561 6.430000e-07 67.6
71 TraesCS2D01G180400 chr6D 81.481 81 12 3 6492 6571 152261636 152261558 8.320000e-06 63.9
72 TraesCS2D01G180400 chr3B 79.508 122 22 3 2957 3076 298196684 298196804 6.390000e-12 84.2
73 TraesCS2D01G180400 chr1D 92.982 57 1 3 9651 9704 22507293 22507237 8.260000e-11 80.5
74 TraesCS2D01G180400 chr1D 78.761 113 17 6 9597 9704 39998319 39998429 1.790000e-07 69.4
75 TraesCS2D01G180400 chr6A 89.474 57 3 2 9651 9704 474981774 474981718 1.790000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G180400 chr2D 124873405 124883325 9920 True 8830.5 16752 100.0000 1 9921 2 chr2D.!!$R3 9920
1 TraesCS2D01G180400 chr2D 236114137 236114788 651 False 797.0 797 88.7200 3920 4573 1 chr2D.!!$F4 653
2 TraesCS2D01G180400 chr2A 130801742 130811301 9559 True 3874.5 7932 97.1250 1 9581 4 chr2A.!!$R3 9580
3 TraesCS2D01G180400 chr2B 177648863 177658105 9242 True 2572.0 4872 96.4465 1 9818 6 chr2B.!!$R1 9817
4 TraesCS2D01G180400 chr5D 271901794 271902437 643 False 843.0 843 90.1990 3920 4572 1 chr5D.!!$F2 652
5 TraesCS2D01G180400 chr5D 228477362 228478009 647 True 797.0 797 88.8210 3920 4572 1 chr5D.!!$R1 652
6 TraesCS2D01G180400 chr4D 197006752 197007413 661 True 826.0 826 89.2050 3915 4579 1 chr4D.!!$R2 664
7 TraesCS2D01G180400 chr7D 421832018 421832665 647 True 824.0 824 89.5870 3920 4572 1 chr7D.!!$R2 652
8 TraesCS2D01G180400 chr3A 51281726 51282374 648 True 804.0 804 88.9910 3919 4572 1 chr3A.!!$R1 653
9 TraesCS2D01G180400 chr7B 685166825 685167483 658 False 789.0 789 88.2710 3920 4582 1 chr7B.!!$F1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 315 0.037447 GGAAGGCTTCTTGGTCAGCT 59.963 55.000 25.25 0.00 36.20 4.24 F
463 476 0.243636 CAAGTTCCCCGTGCAATTCC 59.756 55.000 0.00 0.00 0.00 3.01 F
1680 1695 0.319900 CATATAGCTCCCGCTTGCGT 60.320 55.000 13.97 0.00 46.47 5.24 F
3593 4064 0.236711 CAAGCGCCTTCACACTTGAG 59.763 55.000 2.29 0.00 41.59 3.02 F
4865 5535 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56 F
4914 5584 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95 F
4933 5603 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85 F
4943 5613 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45 F
4944 5614 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51 F
4948 5618 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41 F
4950 5620 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02 F
4951 5621 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85 F
4952 5622 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36 F
8445 9129 2.079925 GGAACAAACAGGAGCTGCTAG 58.920 52.381 7.70 5.25 34.37 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2028 0.395724 GGCCCAGATAACACTTGGGG 60.396 60.000 10.55 0.00 40.07 4.96 R
2449 2465 0.759346 AACAAGTGTCGAGCTTCCCT 59.241 50.000 0.00 0.00 0.00 4.20 R
3598 4069 3.639094 AGCTGACAGAGTACAAGACAACT 59.361 43.478 6.65 0.00 0.00 3.16 R
4895 5565 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28 R
6671 7347 0.675633 AGTTCAACTGGCATGGCAAC 59.324 50.000 23.47 17.16 0.00 4.17 R
6819 7495 3.077359 CAGTTCCAGGTAAAAGAGCAGG 58.923 50.000 0.00 0.00 33.61 4.85 R
7073 7749 6.227298 AGTGTAAGGAGTATGAATCACCAG 57.773 41.667 0.00 0.00 0.00 4.00 R
7291 7967 3.797559 TTGTCATACCAACACCATGGA 57.202 42.857 21.47 0.00 43.54 3.41 R
7815 8499 8.739972 AGTTTTCACCTGGAACAATCATAATAC 58.260 33.333 0.00 0.00 38.70 1.89 R
8065 8749 3.526931 TGCATACTAACTCCAGTCTGC 57.473 47.619 6.66 6.66 44.56 4.26 R
8445 9129 5.529800 TGAGTTAAACTAACCTCAGTTTGCC 59.470 40.000 10.65 2.65 45.85 4.52 R
8484 9168 4.940046 TCATTCTCTTTTCATCCTCTGCAC 59.060 41.667 0.00 0.00 0.00 4.57 R
8505 9189 1.150536 GGCCGCTTCCCCAATATCA 59.849 57.895 0.00 0.00 0.00 2.15 R
9685 10392 0.031414 GTAGGCCAGTAGGGGGAGAA 60.031 60.000 5.01 0.00 37.04 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.988107 TCCCCTTTCAAGCATCTCACT 59.012 47.619 0.00 0.00 0.00 3.41
303 315 0.037447 GGAAGGCTTCTTGGTCAGCT 59.963 55.000 25.25 0.00 36.20 4.24
463 476 0.243636 CAAGTTCCCCGTGCAATTCC 59.756 55.000 0.00 0.00 0.00 3.01
1096 1110 4.219944 TCGTGCATTACTACTTGGAAGACT 59.780 41.667 0.00 0.00 0.00 3.24
1442 1456 0.899720 CGGGTTTGTCTAGGGCACTA 59.100 55.000 0.00 0.00 0.00 2.74
1462 1476 7.308435 GCACTATAGCAAAACTGAAATCTTGT 58.692 34.615 0.00 0.00 0.00 3.16
1463 1477 7.809806 GCACTATAGCAAAACTGAAATCTTGTT 59.190 33.333 0.00 0.00 0.00 2.83
1573 1587 7.101054 TGTTAGACTGTAATGCGAAAATACCT 58.899 34.615 0.00 0.00 0.00 3.08
1680 1695 0.319900 CATATAGCTCCCGCTTGCGT 60.320 55.000 13.97 0.00 46.47 5.24
1789 1804 0.819259 TGGTCACAAGGCAACAGCTC 60.819 55.000 0.00 0.00 41.41 4.09
1823 1838 1.343069 GGCTCCCCTTCGAGATATGT 58.657 55.000 0.00 0.00 30.97 2.29
1970 1985 7.337480 TCTACAATGGTGTACGCTTATCTAA 57.663 36.000 6.35 0.00 39.30 2.10
2053 2069 2.493030 GCTAGGCGCTAACCGTCA 59.507 61.111 7.64 0.00 45.91 4.35
2095 2111 0.990374 AGCTCTTGGTGCCTCATCTT 59.010 50.000 0.00 0.00 0.00 2.40
2100 2116 2.158623 TCTTGGTGCCTCATCTTGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
2570 3038 7.392953 TGGTTTAATGTAGCAAACTGATGATCA 59.607 33.333 0.00 0.00 35.45 2.92
2793 3261 5.047306 TGTTGGACACAAACAAAACATACCA 60.047 36.000 0.00 0.00 38.54 3.25
2886 3357 1.142748 CATGGGACTCGAGTCTGCC 59.857 63.158 36.98 30.96 44.20 4.85
3019 3490 5.649782 AACACTGCCTTATCATCAAAAGG 57.350 39.130 0.00 0.00 44.32 3.11
3179 3650 7.772292 GGCTATATATGGTTGACATGTCATCAT 59.228 37.037 30.55 30.55 40.82 2.45
3310 3781 1.749634 GCCTAGGAGCACGTTTAGAGA 59.250 52.381 14.75 0.00 0.00 3.10
3590 4061 2.896801 CGCAAGCGCCTTCACACTT 61.897 57.895 2.29 0.00 33.11 3.16
3592 4063 1.785041 GCAAGCGCCTTCACACTTGA 61.785 55.000 2.29 0.00 41.59 3.02
3593 4064 0.236711 CAAGCGCCTTCACACTTGAG 59.763 55.000 2.29 0.00 41.59 3.02
3595 4066 0.601311 AGCGCCTTCACACTTGAGAC 60.601 55.000 2.29 0.00 31.71 3.36
3596 4067 0.601311 GCGCCTTCACACTTGAGACT 60.601 55.000 0.00 0.00 31.71 3.24
3597 4068 1.423395 CGCCTTCACACTTGAGACTC 58.577 55.000 0.00 0.00 31.71 3.36
3598 4069 1.269778 CGCCTTCACACTTGAGACTCA 60.270 52.381 0.00 0.00 31.71 3.41
3599 4070 2.411904 GCCTTCACACTTGAGACTCAG 58.588 52.381 5.10 3.11 31.71 3.35
3600 4071 2.224161 GCCTTCACACTTGAGACTCAGT 60.224 50.000 5.10 3.73 31.71 3.41
3601 4072 3.742640 GCCTTCACACTTGAGACTCAGTT 60.743 47.826 5.10 0.00 31.71 3.16
3603 4074 4.437239 CTTCACACTTGAGACTCAGTTGT 58.563 43.478 12.90 12.90 31.71 3.32
3604 4075 4.046938 TCACACTTGAGACTCAGTTGTC 57.953 45.455 14.92 0.00 37.23 3.18
3714 4185 5.705441 TGGTGATAGGAGTTTCAATGTGTTC 59.295 40.000 0.00 0.00 0.00 3.18
3927 4587 3.715638 ATCATGCTCACATAGGGATGG 57.284 47.619 0.00 0.00 37.39 3.51
3957 4617 3.458189 CGGAAACAGACAGAACTGAGTT 58.542 45.455 8.87 0.00 40.63 3.01
4137 4799 9.775854 CTCCTTGAATCATAGAGAAATACACAT 57.224 33.333 4.56 0.00 0.00 3.21
4453 5116 6.042638 TCCATTTTTGTTTCTGTTTCCACA 57.957 33.333 0.00 0.00 0.00 4.17
4813 5483 4.170292 GCTGCATTTCCTAGCCATAATG 57.830 45.455 0.00 0.00 0.00 1.90
4814 5484 3.571401 GCTGCATTTCCTAGCCATAATGT 59.429 43.478 0.00 0.00 32.10 2.71
4815 5485 4.038402 GCTGCATTTCCTAGCCATAATGTT 59.962 41.667 0.00 0.00 32.10 2.71
4816 5486 5.452356 GCTGCATTTCCTAGCCATAATGTTT 60.452 40.000 0.00 0.00 32.10 2.83
4817 5487 6.147864 TGCATTTCCTAGCCATAATGTTTC 57.852 37.500 0.00 0.00 32.10 2.78
4818 5488 5.215160 GCATTTCCTAGCCATAATGTTTCG 58.785 41.667 0.00 0.00 32.10 3.46
4819 5489 5.008613 GCATTTCCTAGCCATAATGTTTCGA 59.991 40.000 0.00 0.00 32.10 3.71
4820 5490 6.430451 CATTTCCTAGCCATAATGTTTCGAC 58.570 40.000 0.00 0.00 0.00 4.20
4821 5491 4.067972 TCCTAGCCATAATGTTTCGACC 57.932 45.455 0.00 0.00 0.00 4.79
4822 5492 3.452990 TCCTAGCCATAATGTTTCGACCA 59.547 43.478 0.00 0.00 0.00 4.02
4823 5493 3.560068 CCTAGCCATAATGTTTCGACCAC 59.440 47.826 0.00 0.00 0.00 4.16
4824 5494 2.365582 AGCCATAATGTTTCGACCACC 58.634 47.619 0.00 0.00 0.00 4.61
4825 5495 2.026262 AGCCATAATGTTTCGACCACCT 60.026 45.455 0.00 0.00 0.00 4.00
4826 5496 2.097466 GCCATAATGTTTCGACCACCTG 59.903 50.000 0.00 0.00 0.00 4.00
4827 5497 3.343617 CCATAATGTTTCGACCACCTGT 58.656 45.455 0.00 0.00 0.00 4.00
4828 5498 3.126858 CCATAATGTTTCGACCACCTGTG 59.873 47.826 0.00 0.00 0.00 3.66
4829 5499 0.951558 AATGTTTCGACCACCTGTGC 59.048 50.000 0.00 0.00 0.00 4.57
4830 5500 0.889186 ATGTTTCGACCACCTGTGCC 60.889 55.000 0.00 0.00 0.00 5.01
4831 5501 1.525077 GTTTCGACCACCTGTGCCA 60.525 57.895 0.00 0.00 0.00 4.92
4832 5502 1.098712 GTTTCGACCACCTGTGCCAA 61.099 55.000 0.00 0.00 0.00 4.52
4833 5503 0.817634 TTTCGACCACCTGTGCCAAG 60.818 55.000 0.00 0.00 0.00 3.61
4834 5504 1.691195 TTCGACCACCTGTGCCAAGA 61.691 55.000 0.00 0.00 0.00 3.02
4835 5505 1.669115 CGACCACCTGTGCCAAGAG 60.669 63.158 0.00 0.00 0.00 2.85
4836 5506 1.302832 GACCACCTGTGCCAAGAGG 60.303 63.158 0.00 0.00 42.72 3.69
4840 5510 3.488423 CCTGTGCCAAGAGGTCCT 58.512 61.111 0.00 0.00 37.19 3.85
4841 5511 1.002868 CCTGTGCCAAGAGGTCCTG 60.003 63.158 0.00 0.00 37.19 3.86
4842 5512 1.002868 CTGTGCCAAGAGGTCCTGG 60.003 63.158 0.00 0.00 37.19 4.45
4843 5513 2.352805 GTGCCAAGAGGTCCTGGG 59.647 66.667 0.00 0.00 39.14 4.45
4844 5514 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
4845 5515 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
4846 5516 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
4847 5517 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
4848 5518 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
4849 5519 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
4850 5520 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
4861 5531 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
4862 5532 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
4863 5533 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
4864 5534 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
4865 5535 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
4866 5536 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
4867 5537 0.403271 AACCAGCCTCTCTGCATTGT 59.597 50.000 0.00 0.00 41.50 2.71
4868 5538 1.279496 ACCAGCCTCTCTGCATTGTA 58.721 50.000 0.00 0.00 41.50 2.41
4869 5539 1.065854 ACCAGCCTCTCTGCATTGTAC 60.066 52.381 0.00 0.00 41.50 2.90
4870 5540 1.209019 CCAGCCTCTCTGCATTGTACT 59.791 52.381 0.00 0.00 41.50 2.73
4871 5541 2.355513 CCAGCCTCTCTGCATTGTACTT 60.356 50.000 0.00 0.00 41.50 2.24
4872 5542 3.341823 CAGCCTCTCTGCATTGTACTTT 58.658 45.455 0.00 0.00 35.78 2.66
4873 5543 3.126514 CAGCCTCTCTGCATTGTACTTTG 59.873 47.826 0.00 0.00 35.78 2.77
4874 5544 2.159462 GCCTCTCTGCATTGTACTTTGC 60.159 50.000 12.05 12.05 39.33 3.68
4875 5545 3.076621 CCTCTCTGCATTGTACTTTGCA 58.923 45.455 18.17 18.17 46.03 4.08
4879 5549 1.255882 TGCATTGTACTTTGCAGGGG 58.744 50.000 16.16 0.00 43.54 4.79
4880 5550 1.256812 GCATTGTACTTTGCAGGGGT 58.743 50.000 13.53 0.00 38.72 4.95
4881 5551 2.224892 TGCATTGTACTTTGCAGGGGTA 60.225 45.455 16.16 0.00 43.54 3.69
4882 5552 2.823154 GCATTGTACTTTGCAGGGGTAA 59.177 45.455 13.53 0.00 38.72 2.85
4883 5553 3.119495 GCATTGTACTTTGCAGGGGTAAG 60.119 47.826 13.53 0.00 38.72 2.34
4884 5554 4.331968 CATTGTACTTTGCAGGGGTAAGA 58.668 43.478 2.16 0.00 0.00 2.10
4885 5555 3.412237 TGTACTTTGCAGGGGTAAGAC 57.588 47.619 2.16 0.00 0.00 3.01
4886 5556 2.976882 TGTACTTTGCAGGGGTAAGACT 59.023 45.455 2.16 0.00 0.00 3.24
4887 5557 4.161876 TGTACTTTGCAGGGGTAAGACTA 58.838 43.478 2.16 0.00 0.00 2.59
4888 5558 3.983044 ACTTTGCAGGGGTAAGACTAG 57.017 47.619 2.16 0.00 0.00 2.57
4889 5559 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
4890 5560 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
4891 5561 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
4892 5562 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
4893 5563 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
4894 5564 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
4895 5565 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
4896 5566 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
4897 5567 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
4898 5568 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
4899 5569 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
4900 5570 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
4901 5571 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
4902 5572 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
4903 5573 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
4904 5574 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
4905 5575 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
4906 5576 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
4907 5577 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
4908 5578 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
4909 5579 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
4910 5580 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
4911 5581 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
4912 5582 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
4913 5583 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
4914 5584 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
4915 5585 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
4916 5586 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
4918 5588 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
4919 5589 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
4920 5590 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
4921 5591 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
4922 5592 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
4923 5593 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
4924 5594 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
4931 5601 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
4932 5602 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
4933 5603 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
4934 5604 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
4935 5605 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
4936 5606 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
4937 5607 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
4938 5608 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
4939 5609 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
4940 5610 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
4941 5611 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
4942 5612 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
4943 5613 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
4944 5614 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
4945 5615 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
4946 5616 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
4947 5617 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
4948 5618 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
4949 5619 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
4950 5620 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
4951 5621 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
4952 5622 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
5207 5877 5.565592 TGCAATCACCTATAACTTTGCAG 57.434 39.130 4.19 0.00 43.02 4.41
5406 6076 6.282930 TGACTGTTTGTACACTTAGTTACCC 58.717 40.000 0.00 0.00 0.00 3.69
5695 6365 4.765339 ACTGTTTTAACCCCAGAGCATTAC 59.235 41.667 0.00 0.00 0.00 1.89
6253 6923 7.494952 GGTAAATTGGAGGTATGACTAACTGAC 59.505 40.741 0.00 0.00 0.00 3.51
6651 7327 4.742417 TGCACAAGCGCATGTTTTTATAT 58.258 34.783 16.76 0.00 46.23 0.86
6652 7328 5.884771 TGCACAAGCGCATGTTTTTATATA 58.115 33.333 16.76 0.00 46.23 0.86
6683 7359 2.234414 AGGTTATTTGTTGCCATGCCAG 59.766 45.455 0.00 0.00 0.00 4.85
7291 7967 4.646492 AGCATGACTGTTTCTTTTGTCCTT 59.354 37.500 0.00 0.00 0.00 3.36
7558 8235 9.813080 CTACAAATCTTTTGCTTCAGTTACTAC 57.187 33.333 0.06 0.00 0.00 2.73
7815 8499 3.744942 CAGAAGGATGTCACTGACACTTG 59.255 47.826 14.20 1.47 45.65 3.16
8065 8749 4.116747 AGCAAACTCCAGTCGAGATAAG 57.883 45.455 0.00 0.00 41.63 1.73
8077 8761 3.129638 GTCGAGATAAGCAGACTGGAGTT 59.870 47.826 4.26 0.00 0.00 3.01
8445 9129 2.079925 GGAACAAACAGGAGCTGCTAG 58.920 52.381 7.70 5.25 34.37 3.42
8484 9168 3.947132 CTCACACGGCCTCTGCAGG 62.947 68.421 15.13 0.00 43.82 4.85
8505 9189 4.018597 AGGTGCAGAGGATGAAAAGAGAAT 60.019 41.667 0.00 0.00 0.00 2.40
8574 9258 3.593442 TGGGGAAGTGTTCTGTTCAAT 57.407 42.857 0.00 0.00 0.00 2.57
8615 9299 8.599055 TTCTATAGATGATGATGAGCAAACAC 57.401 34.615 2.58 0.00 0.00 3.32
8631 9315 4.331968 CAAACACTATTAGCAAGGGGACA 58.668 43.478 0.00 0.00 0.00 4.02
8724 9408 5.794894 TGTAGAGGATGAAAAGGAGACAAC 58.205 41.667 0.00 0.00 0.00 3.32
8725 9409 4.982241 AGAGGATGAAAAGGAGACAACA 57.018 40.909 0.00 0.00 0.00 3.33
8726 9410 5.310409 AGAGGATGAAAAGGAGACAACAA 57.690 39.130 0.00 0.00 0.00 2.83
8780 9464 3.508402 TGAACAGCAGTGCAATGATGAAT 59.492 39.130 35.54 23.82 38.89 2.57
8879 9563 2.995939 GACGATGATGAACAAGACTGCA 59.004 45.455 0.00 0.00 0.00 4.41
9334 10021 2.427453 GGTGATCGTCCTCTACATGTGT 59.573 50.000 9.11 0.00 0.00 3.72
9393 10092 5.594725 TCCTGTGTTGTGCAAAACCTATTTA 59.405 36.000 17.16 0.00 0.00 1.40
9426 10125 7.210718 TGAACTCTGAAGTCAAATCGTACTA 57.789 36.000 0.00 0.00 33.48 1.82
9477 10184 5.124776 TCATTTTTCCGTTATGTTAGGCCTG 59.875 40.000 17.99 0.00 0.00 4.85
9497 10204 1.899814 GATGTCCCTGATACGGCCATA 59.100 52.381 2.24 0.00 0.00 2.74
9500 10207 0.190069 TCCCTGATACGGCCATACCT 59.810 55.000 2.24 0.00 35.61 3.08
9523 10230 2.390696 TGATGCATTGCCTATTTGCCT 58.609 42.857 6.12 0.00 35.51 4.75
9552 10259 2.216750 CTCCATGCAAACCCTTGGCG 62.217 60.000 0.00 0.00 32.76 5.69
9594 10301 4.275524 GCACTCAGCTCAGTGGTC 57.724 61.111 20.08 0.00 43.61 4.02
9595 10302 1.368950 GCACTCAGCTCAGTGGTCA 59.631 57.895 20.08 0.00 43.61 4.02
9596 10303 0.669932 GCACTCAGCTCAGTGGTCAG 60.670 60.000 20.08 0.00 43.61 3.51
9597 10304 0.964700 CACTCAGCTCAGTGGTCAGA 59.035 55.000 10.35 0.00 40.26 3.27
9598 10305 1.067706 CACTCAGCTCAGTGGTCAGAG 60.068 57.143 10.35 0.00 40.26 3.35
9599 10306 1.255882 CTCAGCTCAGTGGTCAGAGT 58.744 55.000 0.00 0.00 34.39 3.24
9600 10307 0.964700 TCAGCTCAGTGGTCAGAGTG 59.035 55.000 0.00 0.00 34.39 3.51
9601 10308 0.669932 CAGCTCAGTGGTCAGAGTGC 60.670 60.000 0.00 0.00 34.39 4.40
9602 10309 1.117749 AGCTCAGTGGTCAGAGTGCA 61.118 55.000 0.00 0.00 34.39 4.57
9603 10310 0.669932 GCTCAGTGGTCAGAGTGCAG 60.670 60.000 0.00 0.00 34.39 4.41
9604 10311 0.678395 CTCAGTGGTCAGAGTGCAGT 59.322 55.000 0.00 0.00 0.00 4.40
9605 10312 0.390492 TCAGTGGTCAGAGTGCAGTG 59.610 55.000 0.00 0.00 0.00 3.66
9606 10313 1.070445 AGTGGTCAGAGTGCAGTGC 59.930 57.895 8.58 8.58 0.00 4.40
9607 10314 1.070445 GTGGTCAGAGTGCAGTGCT 59.930 57.895 17.60 0.00 0.00 4.40
9608 10315 1.070275 TGGTCAGAGTGCAGTGCTG 59.930 57.895 17.60 6.19 0.00 4.41
9618 10325 2.188994 CAGTGCTGCCTCCTAGCC 59.811 66.667 0.00 0.00 40.42 3.93
9619 10326 3.465403 AGTGCTGCCTCCTAGCCG 61.465 66.667 0.00 0.00 40.42 5.52
9620 10327 4.537433 GTGCTGCCTCCTAGCCGG 62.537 72.222 0.00 0.00 40.42 6.13
9636 10343 3.343421 GGCGCGTGTTCGAACCTT 61.343 61.111 24.78 0.00 39.71 3.50
9637 10344 2.127758 GCGCGTGTTCGAACCTTG 60.128 61.111 24.78 15.12 39.71 3.61
9638 10345 2.549282 CGCGTGTTCGAACCTTGG 59.451 61.111 24.78 12.25 39.71 3.61
9639 10346 2.241880 CGCGTGTTCGAACCTTGGT 61.242 57.895 24.78 0.00 39.71 3.67
9640 10347 1.768112 CGCGTGTTCGAACCTTGGTT 61.768 55.000 24.78 4.52 39.71 3.67
9641 10348 0.041576 GCGTGTTCGAACCTTGGTTC 60.042 55.000 24.78 19.50 39.71 3.62
9642 10349 1.578583 CGTGTTCGAACCTTGGTTCT 58.421 50.000 24.78 0.00 39.71 3.01
9643 10350 1.937899 CGTGTTCGAACCTTGGTTCTT 59.062 47.619 24.78 0.00 39.71 2.52
9644 10351 3.125316 CGTGTTCGAACCTTGGTTCTTA 58.875 45.455 24.78 13.38 39.71 2.10
9645 10352 3.060070 CGTGTTCGAACCTTGGTTCTTAC 60.060 47.826 24.78 21.18 39.71 2.34
9646 10353 3.872771 GTGTTCGAACCTTGGTTCTTACA 59.127 43.478 24.78 22.86 0.00 2.41
9647 10354 3.872771 TGTTCGAACCTTGGTTCTTACAC 59.127 43.478 24.78 16.82 0.00 2.90
9648 10355 2.746269 TCGAACCTTGGTTCTTACACG 58.254 47.619 24.55 14.29 0.00 4.49
9649 10356 1.796459 CGAACCTTGGTTCTTACACGG 59.204 52.381 24.55 8.42 33.80 4.94
9650 10357 2.148768 GAACCTTGGTTCTTACACGGG 58.851 52.381 21.47 0.00 32.02 5.28
9651 10358 1.134228 ACCTTGGTTCTTACACGGGT 58.866 50.000 0.00 0.00 32.02 5.28
9652 10359 1.071228 ACCTTGGTTCTTACACGGGTC 59.929 52.381 0.00 0.00 32.02 4.46
9653 10360 1.346722 CCTTGGTTCTTACACGGGTCT 59.653 52.381 0.00 0.00 0.00 3.85
9654 10361 2.612221 CCTTGGTTCTTACACGGGTCTC 60.612 54.545 0.00 0.00 0.00 3.36
9655 10362 1.707106 TGGTTCTTACACGGGTCTCA 58.293 50.000 0.00 0.00 0.00 3.27
9656 10363 1.342174 TGGTTCTTACACGGGTCTCAC 59.658 52.381 0.00 0.00 0.00 3.51
9657 10364 1.342174 GGTTCTTACACGGGTCTCACA 59.658 52.381 0.00 0.00 0.00 3.58
9658 10365 2.028385 GGTTCTTACACGGGTCTCACAT 60.028 50.000 0.00 0.00 0.00 3.21
9659 10366 3.251571 GTTCTTACACGGGTCTCACATC 58.748 50.000 0.00 0.00 0.00 3.06
9660 10367 2.803956 TCTTACACGGGTCTCACATCT 58.196 47.619 0.00 0.00 0.00 2.90
9661 10368 2.492088 TCTTACACGGGTCTCACATCTG 59.508 50.000 0.00 0.00 0.00 2.90
9662 10369 0.530744 TACACGGGTCTCACATCTGC 59.469 55.000 0.00 0.00 0.00 4.26
9663 10370 1.188219 ACACGGGTCTCACATCTGCT 61.188 55.000 0.00 0.00 0.00 4.24
9664 10371 0.036952 CACGGGTCTCACATCTGCTT 60.037 55.000 0.00 0.00 0.00 3.91
9665 10372 0.687354 ACGGGTCTCACATCTGCTTT 59.313 50.000 0.00 0.00 0.00 3.51
9666 10373 1.899814 ACGGGTCTCACATCTGCTTTA 59.100 47.619 0.00 0.00 0.00 1.85
9667 10374 2.501723 ACGGGTCTCACATCTGCTTTAT 59.498 45.455 0.00 0.00 0.00 1.40
9668 10375 3.055094 ACGGGTCTCACATCTGCTTTATT 60.055 43.478 0.00 0.00 0.00 1.40
9669 10376 4.161565 ACGGGTCTCACATCTGCTTTATTA 59.838 41.667 0.00 0.00 0.00 0.98
9670 10377 5.116180 CGGGTCTCACATCTGCTTTATTAA 58.884 41.667 0.00 0.00 0.00 1.40
9671 10378 5.584649 CGGGTCTCACATCTGCTTTATTAAA 59.415 40.000 0.00 0.00 0.00 1.52
9672 10379 6.093495 CGGGTCTCACATCTGCTTTATTAAAA 59.907 38.462 0.00 0.00 0.00 1.52
9673 10380 7.361713 CGGGTCTCACATCTGCTTTATTAAAAA 60.362 37.037 0.00 0.00 0.00 1.94
9674 10381 8.470002 GGGTCTCACATCTGCTTTATTAAAAAT 58.530 33.333 0.00 0.00 0.00 1.82
9675 10382 9.508567 GGTCTCACATCTGCTTTATTAAAAATC 57.491 33.333 0.00 0.00 0.00 2.17
9682 10389 9.956720 CATCTGCTTTATTAAAAATCAGTAGGG 57.043 33.333 10.75 0.00 31.91 3.53
9683 10390 8.519799 TCTGCTTTATTAAAAATCAGTAGGGG 57.480 34.615 10.75 0.00 31.91 4.79
9684 10391 7.068226 TCTGCTTTATTAAAAATCAGTAGGGGC 59.932 37.037 10.75 0.00 31.91 5.80
9685 10392 6.895204 TGCTTTATTAAAAATCAGTAGGGGCT 59.105 34.615 0.00 0.00 0.00 5.19
9686 10393 7.398904 TGCTTTATTAAAAATCAGTAGGGGCTT 59.601 33.333 0.00 0.00 0.00 4.35
9687 10394 7.921214 GCTTTATTAAAAATCAGTAGGGGCTTC 59.079 37.037 0.00 0.00 0.00 3.86
9688 10395 9.190317 CTTTATTAAAAATCAGTAGGGGCTTCT 57.810 33.333 0.00 0.00 0.00 2.85
9689 10396 8.747538 TTATTAAAAATCAGTAGGGGCTTCTC 57.252 34.615 0.00 0.00 0.00 2.87
9690 10397 3.653835 AAAATCAGTAGGGGCTTCTCC 57.346 47.619 0.00 0.00 0.00 3.71
9699 10406 3.648694 GGCTTCTCCCCCTACTGG 58.351 66.667 0.00 0.00 0.00 4.00
9700 10407 2.747443 GGCTTCTCCCCCTACTGGC 61.747 68.421 0.00 0.00 0.00 4.85
9701 10408 2.747443 GCTTCTCCCCCTACTGGCC 61.747 68.421 0.00 0.00 0.00 5.36
9702 10409 1.003573 CTTCTCCCCCTACTGGCCT 59.996 63.158 3.32 0.00 0.00 5.19
9703 10410 0.264955 CTTCTCCCCCTACTGGCCTA 59.735 60.000 3.32 0.00 0.00 3.93
9704 10411 0.031414 TTCTCCCCCTACTGGCCTAC 60.031 60.000 3.32 0.00 0.00 3.18
9705 10412 0.929734 TCTCCCCCTACTGGCCTACT 60.930 60.000 3.32 0.00 0.00 2.57
9706 10413 0.760945 CTCCCCCTACTGGCCTACTG 60.761 65.000 3.32 0.00 0.00 2.74
9707 10414 1.766461 CCCCCTACTGGCCTACTGG 60.766 68.421 3.32 0.99 0.00 4.00
9777 10484 2.357009 GGCGTATCTGTTTCGTAGAGGA 59.643 50.000 0.00 0.00 38.43 3.71
9783 10490 2.028385 TCTGTTTCGTAGAGGAAAGGCC 60.028 50.000 0.00 0.00 38.43 5.19
9820 10527 2.044123 GGAGCAGATTCCGAATTGGT 57.956 50.000 0.00 2.10 39.52 3.67
9821 10528 1.943340 GGAGCAGATTCCGAATTGGTC 59.057 52.381 17.82 17.82 39.52 4.02
9822 10529 2.420687 GGAGCAGATTCCGAATTGGTCT 60.421 50.000 21.46 6.04 37.97 3.85
9823 10530 3.274288 GAGCAGATTCCGAATTGGTCTT 58.726 45.455 18.31 0.00 39.52 3.01
9824 10531 3.690460 AGCAGATTCCGAATTGGTCTTT 58.310 40.909 0.00 0.00 39.52 2.52
9825 10532 4.082125 AGCAGATTCCGAATTGGTCTTTT 58.918 39.130 0.00 0.00 39.52 2.27
9826 10533 4.156739 AGCAGATTCCGAATTGGTCTTTTC 59.843 41.667 0.00 0.00 39.52 2.29
9827 10534 4.675408 GCAGATTCCGAATTGGTCTTTTCC 60.675 45.833 0.00 0.00 39.52 3.13
9828 10535 4.017126 AGATTCCGAATTGGTCTTTTCCC 58.983 43.478 0.00 0.00 39.52 3.97
9829 10536 3.518992 TTCCGAATTGGTCTTTTCCCT 57.481 42.857 0.00 0.00 39.52 4.20
9830 10537 3.067684 TCCGAATTGGTCTTTTCCCTC 57.932 47.619 0.00 0.00 39.52 4.30
9831 10538 2.092323 CCGAATTGGTCTTTTCCCTCC 58.908 52.381 0.00 0.00 0.00 4.30
9832 10539 2.290960 CCGAATTGGTCTTTTCCCTCCT 60.291 50.000 0.00 0.00 0.00 3.69
9833 10540 3.054655 CCGAATTGGTCTTTTCCCTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
9834 10541 4.566907 CCGAATTGGTCTTTTCCCTCCTAA 60.567 45.833 0.00 0.00 0.00 2.69
9835 10542 4.636206 CGAATTGGTCTTTTCCCTCCTAAG 59.364 45.833 0.00 0.00 0.00 2.18
9836 10543 5.571285 GAATTGGTCTTTTCCCTCCTAAGT 58.429 41.667 0.00 0.00 0.00 2.24
9837 10544 4.367039 TTGGTCTTTTCCCTCCTAAGTG 57.633 45.455 0.00 0.00 0.00 3.16
9838 10545 2.039879 TGGTCTTTTCCCTCCTAAGTGC 59.960 50.000 0.00 0.00 0.00 4.40
9839 10546 2.618302 GGTCTTTTCCCTCCTAAGTGCC 60.618 54.545 0.00 0.00 0.00 5.01
9840 10547 2.039879 GTCTTTTCCCTCCTAAGTGCCA 59.960 50.000 0.00 0.00 0.00 4.92
9841 10548 2.919602 TCTTTTCCCTCCTAAGTGCCAT 59.080 45.455 0.00 0.00 0.00 4.40
9842 10549 2.806945 TTTCCCTCCTAAGTGCCATG 57.193 50.000 0.00 0.00 0.00 3.66
9843 10550 1.668826 TTCCCTCCTAAGTGCCATGT 58.331 50.000 0.00 0.00 0.00 3.21
9844 10551 0.911769 TCCCTCCTAAGTGCCATGTG 59.088 55.000 0.00 0.00 0.00 3.21
9845 10552 0.749454 CCCTCCTAAGTGCCATGTGC 60.749 60.000 0.00 0.00 41.77 4.57
9846 10553 0.254178 CCTCCTAAGTGCCATGTGCT 59.746 55.000 7.54 0.00 42.00 4.40
9847 10554 1.376543 CTCCTAAGTGCCATGTGCTG 58.623 55.000 7.54 0.00 42.00 4.41
9848 10555 0.677731 TCCTAAGTGCCATGTGCTGC 60.678 55.000 7.54 0.00 42.00 5.25
9849 10556 0.679002 CCTAAGTGCCATGTGCTGCT 60.679 55.000 0.00 3.81 42.00 4.24
9850 10557 0.450583 CTAAGTGCCATGTGCTGCTG 59.549 55.000 0.00 0.00 42.00 4.41
9851 10558 0.961857 TAAGTGCCATGTGCTGCTGG 60.962 55.000 0.00 1.13 42.00 4.85
9852 10559 2.987547 GTGCCATGTGCTGCTGGT 60.988 61.111 8.04 0.00 42.00 4.00
9853 10560 2.986979 TGCCATGTGCTGCTGGTG 60.987 61.111 8.04 0.97 42.00 4.17
9854 10561 3.755628 GCCATGTGCTGCTGGTGG 61.756 66.667 8.04 9.95 36.87 4.61
9855 10562 2.282674 CCATGTGCTGCTGGTGGT 60.283 61.111 0.00 0.00 0.00 4.16
9856 10563 2.338015 CCATGTGCTGCTGGTGGTC 61.338 63.158 0.00 0.00 0.00 4.02
9857 10564 1.601477 CATGTGCTGCTGGTGGTCA 60.601 57.895 0.00 0.00 0.00 4.02
9858 10565 1.151221 ATGTGCTGCTGGTGGTCAA 59.849 52.632 0.00 0.00 0.00 3.18
9859 10566 0.892358 ATGTGCTGCTGGTGGTCAAG 60.892 55.000 0.00 0.00 0.00 3.02
9860 10567 2.595463 TGCTGCTGGTGGTCAAGC 60.595 61.111 0.00 0.00 0.00 4.01
9861 10568 2.595463 GCTGCTGGTGGTCAAGCA 60.595 61.111 0.00 0.00 35.83 3.91
9862 10569 1.975407 GCTGCTGGTGGTCAAGCAT 60.975 57.895 0.00 0.00 36.65 3.79
9863 10570 1.530013 GCTGCTGGTGGTCAAGCATT 61.530 55.000 0.00 0.00 36.65 3.56
9901 10608 8.223177 ACAATGCAAAAGATTTTTCATTTCCA 57.777 26.923 11.53 0.00 39.69 3.53
9902 10609 8.852135 ACAATGCAAAAGATTTTTCATTTCCAT 58.148 25.926 11.53 0.00 39.69 3.41
9903 10610 9.685828 CAATGCAAAAGATTTTTCATTTCCATT 57.314 25.926 11.53 0.00 39.69 3.16
9919 10626 8.686334 TCATTTCCATTAATTAAGAGAGTTGCC 58.314 33.333 3.94 0.00 0.00 4.52
9920 10627 7.404671 TTTCCATTAATTAAGAGAGTTGCCC 57.595 36.000 3.94 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.144727 GGGGAGGCGAGGAGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
303 315 2.790433 CTTGAATCGGAAGGGGTTCAA 58.210 47.619 1.57 1.57 38.01 2.69
463 476 1.446272 GAAACCTCGGAGGACGCAG 60.446 63.158 30.13 3.05 43.86 5.18
1020 1034 1.867919 CGCTCCACCTCACGAACTCT 61.868 60.000 0.00 0.00 0.00 3.24
1096 1110 3.371063 GTGAGACACGCCCTCGGA 61.371 66.667 0.00 0.00 40.69 4.55
1356 1370 8.213518 ACAATAACAGATGGTAATGCTTAGTG 57.786 34.615 0.00 0.00 0.00 2.74
1518 1532 3.515602 AGGTTTGAGAAGTGCCTGATT 57.484 42.857 0.00 0.00 0.00 2.57
1573 1587 7.440198 TCAATTTTGACATACTTTGCCATTCA 58.560 30.769 0.00 0.00 31.01 2.57
1680 1695 1.358152 CCCAAAGTGGTCAGACCCTA 58.642 55.000 17.59 0.00 37.50 3.53
1970 1985 9.233232 CTATTTGTCTTTTTCTGTTTAAGCGTT 57.767 29.630 0.00 0.00 0.00 4.84
2013 2028 0.395724 GGCCCAGATAACACTTGGGG 60.396 60.000 10.55 0.00 40.07 4.96
2053 2069 2.463752 TCTCCACCCGTATTTAGTGCT 58.536 47.619 0.00 0.00 0.00 4.40
2210 2226 2.633488 GTCTGTAAGGGCATCTCCAAC 58.367 52.381 0.00 0.00 36.21 3.77
2449 2465 0.759346 AACAAGTGTCGAGCTTCCCT 59.241 50.000 0.00 0.00 0.00 4.20
2570 3038 7.502226 TCCTGAAGCGGTGATTTGAATTATATT 59.498 33.333 0.00 0.00 0.00 1.28
2573 3041 5.192927 TCCTGAAGCGGTGATTTGAATTAT 58.807 37.500 0.00 0.00 0.00 1.28
2588 3056 4.082895 TCTGTAGTTCTACGTTCCTGAAGC 60.083 45.833 0.00 0.00 0.00 3.86
3080 3551 4.474394 AGGGGAAAGAGAAAGTGGAAAAG 58.526 43.478 0.00 0.00 0.00 2.27
3593 4064 5.189659 ACAGAGTACAAGACAACTGAGTC 57.810 43.478 0.00 0.00 37.81 3.36
3595 4066 5.188327 TGACAGAGTACAAGACAACTGAG 57.812 43.478 0.00 0.00 37.81 3.35
3596 4067 4.499865 GCTGACAGAGTACAAGACAACTGA 60.500 45.833 6.65 0.00 37.81 3.41
3597 4068 3.738282 GCTGACAGAGTACAAGACAACTG 59.262 47.826 6.65 0.00 39.23 3.16
3598 4069 3.639094 AGCTGACAGAGTACAAGACAACT 59.361 43.478 6.65 0.00 0.00 3.16
3599 4070 3.983741 AGCTGACAGAGTACAAGACAAC 58.016 45.455 6.65 0.00 0.00 3.32
3600 4071 5.712446 AGATAGCTGACAGAGTACAAGACAA 59.288 40.000 6.65 0.00 0.00 3.18
3601 4072 5.257262 AGATAGCTGACAGAGTACAAGACA 58.743 41.667 6.65 0.00 0.00 3.41
3603 4074 5.946377 TCAAGATAGCTGACAGAGTACAAGA 59.054 40.000 6.65 0.00 0.00 3.02
3604 4075 6.201226 TCAAGATAGCTGACAGAGTACAAG 57.799 41.667 6.65 0.00 0.00 3.16
3927 4587 2.151202 TGTCTGTTTCCGCTCCATTTC 58.849 47.619 0.00 0.00 0.00 2.17
4453 5116 7.178451 ACGGAAGTGGAAATGGAATCTTTTATT 59.822 33.333 0.00 0.00 46.97 1.40
4809 5479 2.147958 GCACAGGTGGTCGAAACATTA 58.852 47.619 1.10 0.00 0.00 1.90
4810 5480 0.951558 GCACAGGTGGTCGAAACATT 59.048 50.000 1.10 0.00 0.00 2.71
4811 5481 0.889186 GGCACAGGTGGTCGAAACAT 60.889 55.000 1.10 0.00 0.00 2.71
4812 5482 1.525077 GGCACAGGTGGTCGAAACA 60.525 57.895 1.10 0.00 0.00 2.83
4813 5483 1.098712 TTGGCACAGGTGGTCGAAAC 61.099 55.000 1.10 0.00 42.39 2.78
4814 5484 0.817634 CTTGGCACAGGTGGTCGAAA 60.818 55.000 1.10 0.00 42.39 3.46
4815 5485 1.227823 CTTGGCACAGGTGGTCGAA 60.228 57.895 1.10 0.00 42.39 3.71
4816 5486 2.099652 CTCTTGGCACAGGTGGTCGA 62.100 60.000 1.10 0.00 42.39 4.20
4817 5487 1.669115 CTCTTGGCACAGGTGGTCG 60.669 63.158 1.10 0.00 42.39 4.79
4818 5488 1.302832 CCTCTTGGCACAGGTGGTC 60.303 63.158 1.10 0.00 42.87 4.02
4819 5489 2.839098 CCTCTTGGCACAGGTGGT 59.161 61.111 1.10 0.00 42.87 4.16
4821 5491 1.302832 GGACCTCTTGGCACAGGTG 60.303 63.158 19.72 0.00 43.52 4.00
4822 5492 1.462238 AGGACCTCTTGGCACAGGT 60.462 57.895 15.69 15.69 46.35 4.00
4823 5493 1.002868 CAGGACCTCTTGGCACAGG 60.003 63.158 9.69 9.69 42.39 4.00
4824 5494 1.002868 CCAGGACCTCTTGGCACAG 60.003 63.158 0.00 0.00 42.39 3.66
4825 5495 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
4826 5496 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
4827 5497 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
4828 5498 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
4829 5499 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
4830 5500 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
4831 5501 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
4832 5502 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
4833 5503 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
4834 5504 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
4843 5513 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
4844 5514 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
4845 5515 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
4846 5516 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
4847 5517 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
4848 5518 0.403271 ACAATGCAGAGAGGCTGGTT 59.597 50.000 0.00 0.00 45.03 3.67
4849 5519 1.065854 GTACAATGCAGAGAGGCTGGT 60.066 52.381 0.00 0.00 45.03 4.00
4850 5520 1.209019 AGTACAATGCAGAGAGGCTGG 59.791 52.381 0.00 0.00 45.03 4.85
4852 5522 3.341823 CAAAGTACAATGCAGAGAGGCT 58.658 45.455 0.00 0.00 34.04 4.58
4853 5523 2.159462 GCAAAGTACAATGCAGAGAGGC 60.159 50.000 15.55 0.00 42.12 4.70
4854 5524 3.076621 TGCAAAGTACAATGCAGAGAGG 58.923 45.455 18.27 0.00 46.87 3.69
4861 5531 1.256812 ACCCCTGCAAAGTACAATGC 58.743 50.000 14.06 14.06 42.86 3.56
4862 5532 4.156008 GTCTTACCCCTGCAAAGTACAATG 59.844 45.833 0.00 0.00 0.00 2.82
4863 5533 4.042934 AGTCTTACCCCTGCAAAGTACAAT 59.957 41.667 0.00 0.00 0.00 2.71
4864 5534 3.393278 AGTCTTACCCCTGCAAAGTACAA 59.607 43.478 0.00 0.00 0.00 2.41
4865 5535 2.976882 AGTCTTACCCCTGCAAAGTACA 59.023 45.455 0.00 0.00 0.00 2.90
4866 5536 3.697619 AGTCTTACCCCTGCAAAGTAC 57.302 47.619 0.00 0.00 0.00 2.73
4867 5537 3.773119 CCTAGTCTTACCCCTGCAAAGTA 59.227 47.826 0.00 0.00 0.00 2.24
4868 5538 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
4869 5539 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
4870 5540 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
4871 5541 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
4872 5542 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
4873 5543 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
4874 5544 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
4875 5545 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
4876 5546 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
4877 5547 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
4878 5548 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
4879 5549 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
4880 5550 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
4881 5551 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
4882 5552 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
4883 5553 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
4884 5554 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
4885 5555 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
4886 5556 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
4887 5557 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
4888 5558 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
4889 5559 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
4890 5560 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
4891 5561 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
4892 5562 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
4893 5563 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
4894 5564 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
4895 5565 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
4896 5566 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
4897 5567 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
4898 5568 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
4899 5569 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
4901 5571 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
4902 5572 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
4903 5573 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
4904 5574 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
4905 5575 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
4906 5576 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
4907 5577 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
4915 5585 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
4916 5586 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
4917 5587 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
4918 5588 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
4919 5589 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
4920 5590 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
4921 5591 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
4922 5592 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
4923 5593 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
4924 5594 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
4925 5595 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
4926 5596 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
4927 5597 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
4928 5598 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
4929 5599 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
4930 5600 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
4931 5601 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
4932 5602 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
4933 5603 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
4934 5604 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
4935 5605 1.429930 TAAAGGACAGACCCAGTGCA 58.570 50.000 0.00 0.00 40.05 4.57
4936 5606 2.561478 TTAAAGGACAGACCCAGTGC 57.439 50.000 0.00 0.00 40.05 4.40
4937 5607 4.021102 ACATTAAAGGACAGACCCAGTG 57.979 45.455 0.00 0.00 40.05 3.66
4938 5608 4.724279 AACATTAAAGGACAGACCCAGT 57.276 40.909 0.00 0.00 40.05 4.00
4939 5609 4.154195 CGAAACATTAAAGGACAGACCCAG 59.846 45.833 0.00 0.00 40.05 4.45
4940 5610 4.069304 CGAAACATTAAAGGACAGACCCA 58.931 43.478 0.00 0.00 40.05 4.51
4941 5611 4.153655 GTCGAAACATTAAAGGACAGACCC 59.846 45.833 0.00 0.00 40.05 4.46
4942 5612 4.153655 GGTCGAAACATTAAAGGACAGACC 59.846 45.833 0.00 0.00 37.79 3.85
4943 5613 4.753107 TGGTCGAAACATTAAAGGACAGAC 59.247 41.667 0.00 0.00 0.00 3.51
4944 5614 4.753107 GTGGTCGAAACATTAAAGGACAGA 59.247 41.667 0.00 0.00 0.00 3.41
4945 5615 4.083484 GGTGGTCGAAACATTAAAGGACAG 60.083 45.833 0.00 0.00 0.00 3.51
4946 5616 3.816523 GGTGGTCGAAACATTAAAGGACA 59.183 43.478 0.00 0.00 0.00 4.02
4947 5617 4.070009 AGGTGGTCGAAACATTAAAGGAC 58.930 43.478 0.00 0.00 0.00 3.85
4948 5618 4.069304 CAGGTGGTCGAAACATTAAAGGA 58.931 43.478 0.00 0.00 0.00 3.36
4949 5619 3.818773 ACAGGTGGTCGAAACATTAAAGG 59.181 43.478 0.00 0.00 0.00 3.11
4950 5620 5.030874 GACAGGTGGTCGAAACATTAAAG 57.969 43.478 0.00 0.00 36.65 1.85
5207 5877 2.682856 TGGAAGATGCGGCAAAACTATC 59.317 45.455 6.82 0.00 0.00 2.08
5695 6365 3.380142 CAAAGTGTCCCCACATTTTTCG 58.620 45.455 0.00 0.00 39.69 3.46
6639 7313 7.173218 ACCTCATCGGTGCTATATAAAAACATG 59.827 37.037 0.00 0.00 46.80 3.21
6671 7347 0.675633 AGTTCAACTGGCATGGCAAC 59.324 50.000 23.47 17.16 0.00 4.17
6683 7359 8.986477 ACATGGAAGCATAAAATAAGTTCAAC 57.014 30.769 0.00 0.00 0.00 3.18
6819 7495 3.077359 CAGTTCCAGGTAAAAGAGCAGG 58.923 50.000 0.00 0.00 33.61 4.85
7073 7749 6.227298 AGTGTAAGGAGTATGAATCACCAG 57.773 41.667 0.00 0.00 0.00 4.00
7291 7967 3.797559 TTGTCATACCAACACCATGGA 57.202 42.857 21.47 0.00 43.54 3.41
7815 8499 8.739972 AGTTTTCACCTGGAACAATCATAATAC 58.260 33.333 0.00 0.00 38.70 1.89
8065 8749 3.526931 TGCATACTAACTCCAGTCTGC 57.473 47.619 6.66 6.66 44.56 4.26
8445 9129 5.529800 TGAGTTAAACTAACCTCAGTTTGCC 59.470 40.000 10.65 2.65 45.85 4.52
8484 9168 4.940046 TCATTCTCTTTTCATCCTCTGCAC 59.060 41.667 0.00 0.00 0.00 4.57
8505 9189 1.150536 GGCCGCTTCCCCAATATCA 59.849 57.895 0.00 0.00 0.00 2.15
8574 9258 6.077993 TCTATAGAAGCAGAGCCCTTATCAA 58.922 40.000 0.00 0.00 0.00 2.57
8615 9299 4.168101 TCCCTATGTCCCCTTGCTAATAG 58.832 47.826 0.00 0.00 0.00 1.73
8631 9315 2.264455 GATCAGCATCACCCTCCCTAT 58.736 52.381 0.00 0.00 0.00 2.57
8724 9408 0.468226 TGGCCGCTTCCCTAGTATTG 59.532 55.000 0.00 0.00 0.00 1.90
8725 9409 1.141053 CTTGGCCGCTTCCCTAGTATT 59.859 52.381 0.00 0.00 0.00 1.89
8726 9410 0.759346 CTTGGCCGCTTCCCTAGTAT 59.241 55.000 0.00 0.00 0.00 2.12
8879 9563 0.323725 TCTACGCCTACTTCCCCGTT 60.324 55.000 0.00 0.00 35.36 4.44
9311 9998 3.068732 CACATGTAGAGGACGATCACCAT 59.931 47.826 0.00 0.44 0.00 3.55
9334 10021 3.135225 TCATTTCGCAACTTCTTCGGAA 58.865 40.909 0.00 0.00 0.00 4.30
9393 10092 2.575279 ACTTCAGAGTTCAGGATGCCAT 59.425 45.455 0.00 0.00 34.76 4.40
9426 10125 2.042639 GGGATGGCATTGGCACCT 60.043 61.111 15.84 0.00 41.84 4.00
9477 10184 2.133195 TGGCCGTATCAGGGACATC 58.867 57.895 0.00 0.00 35.99 3.06
9497 10204 3.520691 ATAGGCAATGCATCATGAGGT 57.479 42.857 7.79 0.00 0.00 3.85
9500 10207 3.243941 GGCAAATAGGCAATGCATCATGA 60.244 43.478 7.79 0.00 41.80 3.07
9523 10230 2.627699 GTTTGCATGGAGGAAGGAACAA 59.372 45.455 0.00 0.00 0.00 2.83
9577 10284 0.669932 CTGACCACTGAGCTGAGTGC 60.670 60.000 25.94 14.73 41.85 4.40
9581 10288 0.964700 CACTCTGACCACTGAGCTGA 59.035 55.000 0.00 0.00 42.97 4.26
9582 10289 0.669932 GCACTCTGACCACTGAGCTG 60.670 60.000 0.00 0.00 42.97 4.24
9583 10290 1.117749 TGCACTCTGACCACTGAGCT 61.118 55.000 0.00 0.00 42.97 4.09
9584 10291 0.669932 CTGCACTCTGACCACTGAGC 60.670 60.000 0.00 0.00 42.97 4.26
9585 10292 0.678395 ACTGCACTCTGACCACTGAG 59.322 55.000 0.00 0.00 44.14 3.35
9586 10293 0.390492 CACTGCACTCTGACCACTGA 59.610 55.000 0.00 0.00 0.00 3.41
9587 10294 1.226686 GCACTGCACTCTGACCACTG 61.227 60.000 0.00 0.00 0.00 3.66
9588 10295 1.070445 GCACTGCACTCTGACCACT 59.930 57.895 0.00 0.00 0.00 4.00
9589 10296 1.070445 AGCACTGCACTCTGACCAC 59.930 57.895 3.30 0.00 0.00 4.16
9590 10297 1.070275 CAGCACTGCACTCTGACCA 59.930 57.895 3.30 0.00 0.00 4.02
9591 10298 3.963222 CAGCACTGCACTCTGACC 58.037 61.111 3.30 0.00 0.00 4.02
9601 10308 2.188994 GGCTAGGAGGCAGCACTG 59.811 66.667 0.00 0.00 40.97 3.66
9602 10309 3.465403 CGGCTAGGAGGCAGCACT 61.465 66.667 0.00 0.00 41.44 4.40
9603 10310 4.537433 CCGGCTAGGAGGCAGCAC 62.537 72.222 0.00 0.00 45.00 4.40
9619 10326 3.343421 AAGGTTCGAACACGCGCC 61.343 61.111 28.24 11.16 0.00 6.53
9620 10327 2.127758 CAAGGTTCGAACACGCGC 60.128 61.111 28.24 11.59 0.00 6.86
9621 10328 1.768112 AACCAAGGTTCGAACACGCG 61.768 55.000 28.24 15.18 32.09 6.01
9622 10329 0.041576 GAACCAAGGTTCGAACACGC 60.042 55.000 28.24 12.31 43.82 5.34
9631 10338 1.491754 ACCCGTGTAAGAACCAAGGTT 59.508 47.619 3.73 3.73 41.54 3.50
9632 10339 1.071228 GACCCGTGTAAGAACCAAGGT 59.929 52.381 0.00 0.00 30.54 3.50
9633 10340 1.346722 AGACCCGTGTAAGAACCAAGG 59.653 52.381 0.00 0.00 0.00 3.61
9634 10341 2.036733 TGAGACCCGTGTAAGAACCAAG 59.963 50.000 0.00 0.00 0.00 3.61
9635 10342 2.040939 TGAGACCCGTGTAAGAACCAA 58.959 47.619 0.00 0.00 0.00 3.67
9636 10343 1.342174 GTGAGACCCGTGTAAGAACCA 59.658 52.381 0.00 0.00 0.00 3.67
9637 10344 1.342174 TGTGAGACCCGTGTAAGAACC 59.658 52.381 0.00 0.00 0.00 3.62
9638 10345 2.806608 TGTGAGACCCGTGTAAGAAC 57.193 50.000 0.00 0.00 0.00 3.01
9639 10346 3.056821 CAGATGTGAGACCCGTGTAAGAA 60.057 47.826 0.00 0.00 0.00 2.52
9640 10347 2.492088 CAGATGTGAGACCCGTGTAAGA 59.508 50.000 0.00 0.00 0.00 2.10
9641 10348 2.881074 CAGATGTGAGACCCGTGTAAG 58.119 52.381 0.00 0.00 0.00 2.34
9642 10349 1.067142 GCAGATGTGAGACCCGTGTAA 60.067 52.381 0.00 0.00 0.00 2.41
9643 10350 0.530744 GCAGATGTGAGACCCGTGTA 59.469 55.000 0.00 0.00 0.00 2.90
9644 10351 1.188219 AGCAGATGTGAGACCCGTGT 61.188 55.000 0.00 0.00 0.00 4.49
9645 10352 0.036952 AAGCAGATGTGAGACCCGTG 60.037 55.000 0.00 0.00 0.00 4.94
9646 10353 0.687354 AAAGCAGATGTGAGACCCGT 59.313 50.000 0.00 0.00 0.00 5.28
9647 10354 2.672961 TAAAGCAGATGTGAGACCCG 57.327 50.000 0.00 0.00 0.00 5.28
9648 10355 7.391148 TTTTAATAAAGCAGATGTGAGACCC 57.609 36.000 0.00 0.00 0.00 4.46
9649 10356 9.508567 GATTTTTAATAAAGCAGATGTGAGACC 57.491 33.333 0.00 0.00 0.00 3.85
9656 10363 9.956720 CCCTACTGATTTTTAATAAAGCAGATG 57.043 33.333 23.07 17.11 34.38 2.90
9657 10364 9.136323 CCCCTACTGATTTTTAATAAAGCAGAT 57.864 33.333 23.07 14.88 34.38 2.90
9658 10365 7.068226 GCCCCTACTGATTTTTAATAAAGCAGA 59.932 37.037 23.07 12.74 34.38 4.26
9659 10366 7.068716 AGCCCCTACTGATTTTTAATAAAGCAG 59.931 37.037 18.40 18.40 35.42 4.24
9660 10367 6.895204 AGCCCCTACTGATTTTTAATAAAGCA 59.105 34.615 0.00 0.00 0.00 3.91
9661 10368 7.348080 AGCCCCTACTGATTTTTAATAAAGC 57.652 36.000 0.00 0.00 0.00 3.51
9662 10369 9.190317 AGAAGCCCCTACTGATTTTTAATAAAG 57.810 33.333 0.00 0.00 0.00 1.85
9663 10370 9.185680 GAGAAGCCCCTACTGATTTTTAATAAA 57.814 33.333 0.00 0.00 0.00 1.40
9664 10371 7.778382 GGAGAAGCCCCTACTGATTTTTAATAA 59.222 37.037 0.00 0.00 0.00 1.40
9665 10372 7.287810 GGAGAAGCCCCTACTGATTTTTAATA 58.712 38.462 0.00 0.00 0.00 0.98
9666 10373 6.129874 GGAGAAGCCCCTACTGATTTTTAAT 58.870 40.000 0.00 0.00 0.00 1.40
9667 10374 5.506708 GGAGAAGCCCCTACTGATTTTTAA 58.493 41.667 0.00 0.00 0.00 1.52
9668 10375 5.112129 GGAGAAGCCCCTACTGATTTTTA 57.888 43.478 0.00 0.00 0.00 1.52
9669 10376 3.969553 GGAGAAGCCCCTACTGATTTTT 58.030 45.455 0.00 0.00 0.00 1.94
9670 10377 3.653835 GGAGAAGCCCCTACTGATTTT 57.346 47.619 0.00 0.00 0.00 1.82
9682 10389 2.747443 GCCAGTAGGGGGAGAAGCC 61.747 68.421 0.00 0.00 37.04 4.35
9683 10390 2.747443 GGCCAGTAGGGGGAGAAGC 61.747 68.421 0.00 0.00 37.04 3.86
9684 10391 0.264955 TAGGCCAGTAGGGGGAGAAG 59.735 60.000 5.01 0.00 37.04 2.85
9685 10392 0.031414 GTAGGCCAGTAGGGGGAGAA 60.031 60.000 5.01 0.00 37.04 2.87
9686 10393 0.929734 AGTAGGCCAGTAGGGGGAGA 60.930 60.000 5.01 0.00 37.04 3.71
9687 10394 0.760945 CAGTAGGCCAGTAGGGGGAG 60.761 65.000 5.01 0.00 37.04 4.30
9688 10395 1.313475 CAGTAGGCCAGTAGGGGGA 59.687 63.158 5.01 0.00 37.04 4.81
9689 10396 1.766461 CCAGTAGGCCAGTAGGGGG 60.766 68.421 5.01 0.00 37.04 5.40
9690 10397 3.971894 CCAGTAGGCCAGTAGGGG 58.028 66.667 5.01 0.00 37.04 4.79
9732 10439 0.597568 CATGGCGTGCTCCAGAAAAA 59.402 50.000 0.00 0.00 39.89 1.94
9815 10522 4.811063 GCACTTAGGAGGGAAAAGACCAAT 60.811 45.833 0.00 0.00 0.00 3.16
9818 10525 2.618302 GGCACTTAGGAGGGAAAAGACC 60.618 54.545 0.00 0.00 0.00 3.85
9819 10526 2.039879 TGGCACTTAGGAGGGAAAAGAC 59.960 50.000 0.00 0.00 0.00 3.01
9820 10527 2.344592 TGGCACTTAGGAGGGAAAAGA 58.655 47.619 0.00 0.00 0.00 2.52
9821 10528 2.879103 TGGCACTTAGGAGGGAAAAG 57.121 50.000 0.00 0.00 0.00 2.27
9822 10529 2.378547 ACATGGCACTTAGGAGGGAAAA 59.621 45.455 0.00 0.00 0.00 2.29
9823 10530 1.992557 ACATGGCACTTAGGAGGGAAA 59.007 47.619 0.00 0.00 0.00 3.13
9824 10531 1.281867 CACATGGCACTTAGGAGGGAA 59.718 52.381 0.00 0.00 0.00 3.97
9825 10532 0.911769 CACATGGCACTTAGGAGGGA 59.088 55.000 0.00 0.00 0.00 4.20
9826 10533 0.749454 GCACATGGCACTTAGGAGGG 60.749 60.000 0.00 0.00 43.97 4.30
9827 10534 2.785868 GCACATGGCACTTAGGAGG 58.214 57.895 0.00 0.00 43.97 4.30
9837 10544 3.755628 CCACCAGCAGCACATGGC 61.756 66.667 0.00 0.00 40.45 4.40
9838 10545 2.282674 ACCACCAGCAGCACATGG 60.283 61.111 0.00 7.18 42.60 3.66
9839 10546 1.174078 TTGACCACCAGCAGCACATG 61.174 55.000 0.00 0.00 0.00 3.21
9840 10547 0.892358 CTTGACCACCAGCAGCACAT 60.892 55.000 0.00 0.00 0.00 3.21
9841 10548 1.526686 CTTGACCACCAGCAGCACA 60.527 57.895 0.00 0.00 0.00 4.57
9842 10549 2.912624 GCTTGACCACCAGCAGCAC 61.913 63.158 0.00 0.00 30.81 4.40
9843 10550 2.595463 GCTTGACCACCAGCAGCA 60.595 61.111 0.00 0.00 30.81 4.41
9844 10551 1.530013 AATGCTTGACCACCAGCAGC 61.530 55.000 0.00 0.00 40.78 5.25
9845 10552 0.242825 CAATGCTTGACCACCAGCAG 59.757 55.000 0.00 0.00 40.78 4.24
9846 10553 1.808531 GCAATGCTTGACCACCAGCA 61.809 55.000 0.00 0.00 41.73 4.41
9847 10554 1.080298 GCAATGCTTGACCACCAGC 60.080 57.895 0.00 0.00 0.00 4.85
9848 10555 2.649831 AGCAATGCTTGACCACCAG 58.350 52.632 0.00 0.00 33.89 4.00
9849 10556 4.927557 AGCAATGCTTGACCACCA 57.072 50.000 0.00 0.00 33.89 4.17
9893 10600 8.686334 GGCAACTCTCTTAATTAATGGAAATGA 58.314 33.333 0.00 0.00 0.00 2.57
9894 10601 7.922811 GGGCAACTCTCTTAATTAATGGAAATG 59.077 37.037 0.00 4.03 0.00 2.32
9895 10602 8.011844 GGGCAACTCTCTTAATTAATGGAAAT 57.988 34.615 0.00 0.00 0.00 2.17
9896 10603 7.404671 GGGCAACTCTCTTAATTAATGGAAA 57.595 36.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.