Multiple sequence alignment - TraesCS2D01G179800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G179800 chr2D 100.000 4785 0 0 1 4785 124065447 124060663 0.000000e+00 8837.0
1 TraesCS2D01G179800 chr2D 78.030 132 22 5 22 149 361240911 361241039 5.140000e-10 76.8
2 TraesCS2D01G179800 chr2A 96.204 4320 122 21 475 4770 129867906 129872207 0.000000e+00 7031.0
3 TraesCS2D01G179800 chr2A 88.435 147 13 2 2317 2460 130392867 130393012 1.770000e-39 174.0
4 TraesCS2D01G179800 chr2A 100.000 31 0 0 4755 4785 129872210 129872240 1.860000e-04 58.4
5 TraesCS2D01G179800 chr2B 95.231 4424 143 32 396 4770 176709178 176704774 0.000000e+00 6938.0
6 TraesCS2D01G179800 chr2B 93.145 248 14 2 150 397 504193167 504193411 1.270000e-95 361.0
7 TraesCS2D01G179800 chr2B 95.973 149 6 0 1 149 772393963 772393815 4.780000e-60 243.0
8 TraesCS2D01G179800 chr6D 95.968 248 10 0 150 397 453724846 453725093 2.070000e-108 403.0
9 TraesCS2D01G179800 chr7D 95.349 172 8 0 150 321 197818272 197818101 1.700000e-69 274.0
10 TraesCS2D01G179800 chr7D 95.513 156 7 0 1 156 158942675 158942830 2.860000e-62 250.0
11 TraesCS2D01G179800 chr5D 91.447 152 10 3 1 149 3935444 3935293 6.280000e-49 206.0
12 TraesCS2D01G179800 chr5D 97.959 49 1 0 102 150 545618813 545618861 8.530000e-13 86.1
13 TraesCS2D01G179800 chr5D 79.200 125 18 7 31 150 416436329 416436208 3.970000e-11 80.5
14 TraesCS2D01G179800 chr5B 94.624 93 5 0 2 94 688358521 688358613 1.390000e-30 145.0
15 TraesCS2D01G179800 chr5A 92.708 96 7 0 10 105 205015568 205015473 6.460000e-29 139.0
16 TraesCS2D01G179800 chr4D 81.720 93 10 5 66 152 505310327 505310418 2.390000e-08 71.3
17 TraesCS2D01G179800 chr7B 77.686 121 19 8 1 117 423764020 423764136 3.090000e-07 67.6
18 TraesCS2D01G179800 chr4A 82.143 84 10 5 75 154 688563255 688563337 3.090000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G179800 chr2D 124060663 124065447 4784 True 8837.0 8837 100.000 1 4785 1 chr2D.!!$R1 4784
1 TraesCS2D01G179800 chr2A 129867906 129872240 4334 False 3544.7 7031 98.102 475 4785 2 chr2A.!!$F2 4310
2 TraesCS2D01G179800 chr2B 176704774 176709178 4404 True 6938.0 6938 95.231 396 4770 1 chr2B.!!$R1 4374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.179200 CGTCGGCTTGTTAATGTGGC 60.179 55.000 0.00 0.0 0.0 5.01 F
607 610 0.180406 CCATAGACTTCAACCCCGGG 59.820 60.000 15.80 15.8 0.0 5.73 F
1239 1242 2.026879 GAGCACCTCTCGATCGCC 59.973 66.667 11.09 0.0 31.2 5.54 F
2039 2048 1.419387 GGAGGAGGTTGAGGATGATGG 59.581 57.143 0.00 0.0 0.0 3.51 F
2311 2323 0.388659 TGCATGTTCAGTTTGTGGGC 59.611 50.000 0.00 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1626 0.383246 GATCCTCGTCATCGTCGTCG 60.383 60.000 0.0 0.0 38.33 5.12 R
2039 2048 0.177604 CTCAGCCTCCTCACCATCAC 59.822 60.000 0.0 0.0 0.00 3.06 R
2041 2050 1.145819 GCTCAGCCTCCTCACCATC 59.854 63.158 0.0 0.0 0.00 3.51 R
3459 3494 0.038744 CCTGGACTTCCAACAGCCAT 59.961 55.000 0.0 0.0 46.97 4.40 R
3956 4000 1.553690 CGAAGGAAGGAGGGAAGCCA 61.554 60.000 0.0 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.967734 CGTCGGCTTGTTAATGTGG 57.032 52.632 0.00 0.00 0.00 4.17
19 20 0.179200 CGTCGGCTTGTTAATGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
20 21 1.165270 GTCGGCTTGTTAATGTGGCT 58.835 50.000 0.00 0.00 0.00 4.75
21 22 1.135689 GTCGGCTTGTTAATGTGGCTG 60.136 52.381 0.00 0.00 0.00 4.85
22 23 0.456653 CGGCTTGTTAATGTGGCTGC 60.457 55.000 0.00 0.00 0.00 5.25
23 24 0.890683 GGCTTGTTAATGTGGCTGCT 59.109 50.000 0.00 0.00 0.00 4.24
24 25 1.135286 GGCTTGTTAATGTGGCTGCTC 60.135 52.381 0.00 0.00 0.00 4.26
25 26 1.541147 GCTTGTTAATGTGGCTGCTCA 59.459 47.619 0.00 0.00 0.00 4.26
26 27 2.165030 GCTTGTTAATGTGGCTGCTCAT 59.835 45.455 0.00 2.39 0.00 2.90
27 28 3.733077 GCTTGTTAATGTGGCTGCTCATC 60.733 47.826 0.00 0.00 0.00 2.92
28 29 3.354948 TGTTAATGTGGCTGCTCATCT 57.645 42.857 0.00 0.48 0.00 2.90
29 30 4.486125 TGTTAATGTGGCTGCTCATCTA 57.514 40.909 0.00 0.00 0.00 1.98
30 31 5.039920 TGTTAATGTGGCTGCTCATCTAT 57.960 39.130 0.00 0.00 0.00 1.98
31 32 5.439721 TGTTAATGTGGCTGCTCATCTATT 58.560 37.500 0.00 2.59 0.00 1.73
32 33 6.591001 TGTTAATGTGGCTGCTCATCTATTA 58.409 36.000 0.00 1.78 0.00 0.98
33 34 7.053498 TGTTAATGTGGCTGCTCATCTATTAA 58.947 34.615 0.00 6.78 0.00 1.40
34 35 7.012327 TGTTAATGTGGCTGCTCATCTATTAAC 59.988 37.037 21.45 21.45 38.89 2.01
35 36 4.760530 TGTGGCTGCTCATCTATTAACT 57.239 40.909 0.00 0.00 0.00 2.24
36 37 5.869649 TGTGGCTGCTCATCTATTAACTA 57.130 39.130 0.00 0.00 0.00 2.24
37 38 6.233905 TGTGGCTGCTCATCTATTAACTAA 57.766 37.500 0.00 0.00 0.00 2.24
38 39 6.283694 TGTGGCTGCTCATCTATTAACTAAG 58.716 40.000 0.00 0.00 0.00 2.18
39 40 6.127054 TGTGGCTGCTCATCTATTAACTAAGT 60.127 38.462 0.00 0.00 0.00 2.24
40 41 6.422400 GTGGCTGCTCATCTATTAACTAAGTC 59.578 42.308 0.00 0.00 0.00 3.01
41 42 6.325028 TGGCTGCTCATCTATTAACTAAGTCT 59.675 38.462 0.00 0.00 0.00 3.24
42 43 7.147655 TGGCTGCTCATCTATTAACTAAGTCTT 60.148 37.037 0.00 0.00 0.00 3.01
43 44 7.170658 GGCTGCTCATCTATTAACTAAGTCTTG 59.829 40.741 0.00 0.00 0.00 3.02
44 45 7.708752 GCTGCTCATCTATTAACTAAGTCTTGT 59.291 37.037 0.00 0.00 0.00 3.16
84 85 9.765795 ATCTAGTTATTTTTCATTCTACTCCGG 57.234 33.333 0.00 0.00 0.00 5.14
85 86 8.974238 TCTAGTTATTTTTCATTCTACTCCGGA 58.026 33.333 2.93 2.93 0.00 5.14
86 87 9.765795 CTAGTTATTTTTCATTCTACTCCGGAT 57.234 33.333 3.57 0.00 0.00 4.18
88 89 8.893727 AGTTATTTTTCATTCTACTCCGGATTG 58.106 33.333 3.57 0.00 0.00 2.67
89 90 8.674607 GTTATTTTTCATTCTACTCCGGATTGT 58.325 33.333 3.57 2.36 0.00 2.71
90 91 9.893634 TTATTTTTCATTCTACTCCGGATTGTA 57.106 29.630 3.57 3.68 0.00 2.41
91 92 8.980481 ATTTTTCATTCTACTCCGGATTGTAT 57.020 30.769 3.57 0.00 0.00 2.29
92 93 8.433421 TTTTTCATTCTACTCCGGATTGTATC 57.567 34.615 3.57 0.00 0.00 2.24
93 94 5.723672 TCATTCTACTCCGGATTGTATCC 57.276 43.478 3.57 0.00 46.22 2.59
103 104 2.599677 GGATTGTATCCGGGAGACTCT 58.400 52.381 21.35 9.47 40.13 3.24
104 105 2.966516 GGATTGTATCCGGGAGACTCTT 59.033 50.000 21.35 7.29 40.13 2.85
105 106 3.243907 GGATTGTATCCGGGAGACTCTTG 60.244 52.174 21.35 0.00 40.13 3.02
106 107 2.526888 TGTATCCGGGAGACTCTTGT 57.473 50.000 21.35 0.00 0.00 3.16
107 108 3.657398 TGTATCCGGGAGACTCTTGTA 57.343 47.619 21.35 0.00 0.00 2.41
108 109 4.180377 TGTATCCGGGAGACTCTTGTAT 57.820 45.455 21.35 0.00 0.00 2.29
109 110 4.142790 TGTATCCGGGAGACTCTTGTATC 58.857 47.826 21.35 0.00 33.97 2.24
110 111 3.603965 ATCCGGGAGACTCTTGTATCT 57.396 47.619 0.00 0.00 35.02 1.98
111 112 3.383698 TCCGGGAGACTCTTGTATCTT 57.616 47.619 0.00 0.00 35.02 2.40
112 113 3.709587 TCCGGGAGACTCTTGTATCTTT 58.290 45.455 0.00 0.00 35.02 2.52
113 114 3.447586 TCCGGGAGACTCTTGTATCTTTG 59.552 47.826 0.00 0.00 35.02 2.77
114 115 3.430929 CCGGGAGACTCTTGTATCTTTGG 60.431 52.174 1.74 0.00 35.02 3.28
115 116 3.195825 CGGGAGACTCTTGTATCTTTGGT 59.804 47.826 1.74 0.00 35.02 3.67
116 117 4.322801 CGGGAGACTCTTGTATCTTTGGTT 60.323 45.833 1.74 0.00 35.02 3.67
117 118 5.105473 CGGGAGACTCTTGTATCTTTGGTTA 60.105 44.000 1.74 0.00 35.02 2.85
118 119 6.407074 CGGGAGACTCTTGTATCTTTGGTTAT 60.407 42.308 1.74 0.00 35.02 1.89
119 120 6.763610 GGGAGACTCTTGTATCTTTGGTTATG 59.236 42.308 1.74 0.00 35.02 1.90
120 121 7.331791 GGAGACTCTTGTATCTTTGGTTATGT 58.668 38.462 1.74 0.00 35.02 2.29
121 122 7.278868 GGAGACTCTTGTATCTTTGGTTATGTG 59.721 40.741 1.74 0.00 35.02 3.21
122 123 7.907389 AGACTCTTGTATCTTTGGTTATGTGA 58.093 34.615 0.00 0.00 0.00 3.58
123 124 8.543774 AGACTCTTGTATCTTTGGTTATGTGAT 58.456 33.333 0.00 0.00 0.00 3.06
124 125 8.723942 ACTCTTGTATCTTTGGTTATGTGATC 57.276 34.615 0.00 0.00 0.00 2.92
125 126 8.321353 ACTCTTGTATCTTTGGTTATGTGATCA 58.679 33.333 0.00 0.00 0.00 2.92
126 127 9.166173 CTCTTGTATCTTTGGTTATGTGATCAA 57.834 33.333 0.00 0.00 0.00 2.57
127 128 9.685276 TCTTGTATCTTTGGTTATGTGATCAAT 57.315 29.630 0.00 0.00 0.00 2.57
133 134 8.579850 TCTTTGGTTATGTGATCAATAAAGCT 57.420 30.769 0.00 0.00 0.00 3.74
134 135 8.461222 TCTTTGGTTATGTGATCAATAAAGCTG 58.539 33.333 0.00 0.00 0.00 4.24
135 136 7.936496 TTGGTTATGTGATCAATAAAGCTGA 57.064 32.000 0.00 0.00 0.00 4.26
136 137 8.523915 TTGGTTATGTGATCAATAAAGCTGAT 57.476 30.769 0.00 0.00 36.21 2.90
137 138 7.933396 TGGTTATGTGATCAATAAAGCTGATG 58.067 34.615 0.00 0.00 33.63 3.07
138 139 7.557358 TGGTTATGTGATCAATAAAGCTGATGT 59.443 33.333 0.00 0.00 33.63 3.06
139 140 8.408601 GGTTATGTGATCAATAAAGCTGATGTT 58.591 33.333 0.00 0.00 33.63 2.71
140 141 9.443283 GTTATGTGATCAATAAAGCTGATGTTC 57.557 33.333 0.00 0.00 33.63 3.18
141 142 7.876936 ATGTGATCAATAAAGCTGATGTTCT 57.123 32.000 0.00 0.00 33.63 3.01
142 143 8.969260 ATGTGATCAATAAAGCTGATGTTCTA 57.031 30.769 0.00 0.00 33.63 2.10
143 144 8.791327 TGTGATCAATAAAGCTGATGTTCTAA 57.209 30.769 0.00 0.00 33.63 2.10
144 145 9.230122 TGTGATCAATAAAGCTGATGTTCTAAA 57.770 29.630 0.00 0.00 33.63 1.85
173 174 6.288426 GCTATACCTAGCTAAAAAGTGTGC 57.712 41.667 0.00 0.00 45.78 4.57
174 175 5.236695 GCTATACCTAGCTAAAAAGTGTGCC 59.763 44.000 0.00 0.00 45.78 5.01
175 176 3.502123 ACCTAGCTAAAAAGTGTGCCA 57.498 42.857 0.00 0.00 0.00 4.92
176 177 3.412386 ACCTAGCTAAAAAGTGTGCCAG 58.588 45.455 0.00 0.00 0.00 4.85
177 178 2.162408 CCTAGCTAAAAAGTGTGCCAGC 59.838 50.000 0.00 0.00 0.00 4.85
178 179 1.986882 AGCTAAAAAGTGTGCCAGCT 58.013 45.000 0.00 0.00 34.63 4.24
179 180 2.310538 AGCTAAAAAGTGTGCCAGCTT 58.689 42.857 0.00 0.00 35.94 3.74
180 181 3.486383 AGCTAAAAAGTGTGCCAGCTTA 58.514 40.909 0.00 0.00 35.94 3.09
181 182 4.082125 AGCTAAAAAGTGTGCCAGCTTAT 58.918 39.130 0.00 0.00 35.94 1.73
182 183 4.524328 AGCTAAAAAGTGTGCCAGCTTATT 59.476 37.500 0.00 0.00 35.94 1.40
183 184 5.710099 AGCTAAAAAGTGTGCCAGCTTATTA 59.290 36.000 0.00 0.00 35.94 0.98
184 185 6.030228 GCTAAAAAGTGTGCCAGCTTATTAG 58.970 40.000 0.00 0.00 0.00 1.73
194 195 2.235546 GCTTATTAGCTTCCCGCGG 58.764 57.895 21.04 21.04 44.27 6.46
195 196 1.228657 GCTTATTAGCTTCCCGCGGG 61.229 60.000 39.13 39.13 44.27 6.13
196 197 1.227734 TTATTAGCTTCCCGCGGGC 60.228 57.895 39.89 27.37 45.59 6.13
197 198 1.973816 TTATTAGCTTCCCGCGGGCA 61.974 55.000 39.89 29.47 45.59 5.36
198 199 1.973816 TATTAGCTTCCCGCGGGCAA 61.974 55.000 39.89 29.52 45.59 4.52
199 200 2.624674 ATTAGCTTCCCGCGGGCAAT 62.625 55.000 39.89 25.93 45.59 3.56
223 224 4.686839 CGAAAGGAAACAGAAGGGATTC 57.313 45.455 0.00 0.00 0.00 2.52
224 225 3.440522 CGAAAGGAAACAGAAGGGATTCC 59.559 47.826 0.00 0.00 41.32 3.01
225 226 4.407365 GAAAGGAAACAGAAGGGATTCCA 58.593 43.478 4.80 0.00 43.03 3.53
226 227 4.682021 AAGGAAACAGAAGGGATTCCAT 57.318 40.909 4.80 0.00 43.03 3.41
227 228 3.973425 AGGAAACAGAAGGGATTCCATG 58.027 45.455 4.80 0.36 43.03 3.66
228 229 2.428530 GGAAACAGAAGGGATTCCATGC 59.571 50.000 4.80 0.00 40.81 4.06
229 230 1.755179 AACAGAAGGGATTCCATGCG 58.245 50.000 4.80 0.00 34.83 4.73
230 231 0.749454 ACAGAAGGGATTCCATGCGC 60.749 55.000 0.00 0.00 34.83 6.09
231 232 0.465097 CAGAAGGGATTCCATGCGCT 60.465 55.000 9.73 0.00 34.83 5.92
232 233 1.131638 AGAAGGGATTCCATGCGCTA 58.868 50.000 9.73 0.00 34.83 4.26
233 234 1.490490 AGAAGGGATTCCATGCGCTAA 59.510 47.619 9.73 0.00 34.83 3.09
234 235 2.107204 AGAAGGGATTCCATGCGCTAAT 59.893 45.455 9.73 3.12 34.83 1.73
235 236 2.664402 AGGGATTCCATGCGCTAATT 57.336 45.000 9.73 0.00 34.83 1.40
236 237 2.508526 AGGGATTCCATGCGCTAATTC 58.491 47.619 9.73 2.08 34.83 2.17
237 238 2.158623 AGGGATTCCATGCGCTAATTCA 60.159 45.455 9.73 0.00 34.83 2.57
238 239 2.622942 GGGATTCCATGCGCTAATTCAA 59.377 45.455 9.73 0.00 0.00 2.69
239 240 3.068024 GGGATTCCATGCGCTAATTCAAA 59.932 43.478 9.73 0.00 0.00 2.69
240 241 4.293415 GGATTCCATGCGCTAATTCAAAG 58.707 43.478 9.73 0.00 0.00 2.77
241 242 2.849880 TCCATGCGCTAATTCAAAGC 57.150 45.000 9.73 0.00 36.60 3.51
242 243 2.090760 TCCATGCGCTAATTCAAAGCA 58.909 42.857 9.73 0.69 40.08 3.91
243 244 2.097954 TCCATGCGCTAATTCAAAGCAG 59.902 45.455 9.73 0.00 41.34 4.24
244 245 2.159338 CCATGCGCTAATTCAAAGCAGT 60.159 45.455 9.73 0.00 41.34 4.40
245 246 2.900122 TGCGCTAATTCAAAGCAGTC 57.100 45.000 9.73 0.00 40.08 3.51
246 247 1.468520 TGCGCTAATTCAAAGCAGTCC 59.531 47.619 9.73 0.00 40.08 3.85
247 248 1.468520 GCGCTAATTCAAAGCAGTCCA 59.531 47.619 0.00 0.00 40.08 4.02
248 249 2.729156 GCGCTAATTCAAAGCAGTCCAC 60.729 50.000 0.00 0.00 40.08 4.02
249 250 2.744202 CGCTAATTCAAAGCAGTCCACT 59.256 45.455 0.00 0.00 40.08 4.00
250 251 3.932710 CGCTAATTCAAAGCAGTCCACTA 59.067 43.478 0.00 0.00 40.08 2.74
251 252 4.033358 CGCTAATTCAAAGCAGTCCACTAG 59.967 45.833 0.00 0.00 40.08 2.57
252 253 5.178797 GCTAATTCAAAGCAGTCCACTAGA 58.821 41.667 0.00 0.00 39.83 2.43
253 254 5.643777 GCTAATTCAAAGCAGTCCACTAGAA 59.356 40.000 0.00 0.00 39.83 2.10
254 255 6.317391 GCTAATTCAAAGCAGTCCACTAGAAT 59.683 38.462 0.00 0.00 39.83 2.40
255 256 6.506500 AATTCAAAGCAGTCCACTAGAATG 57.493 37.500 0.00 0.00 43.53 2.67
256 257 3.942829 TCAAAGCAGTCCACTAGAATGG 58.057 45.455 0.00 0.00 40.96 3.16
257 258 3.012518 CAAAGCAGTCCACTAGAATGGG 58.987 50.000 0.00 0.00 40.96 4.00
258 259 0.543749 AGCAGTCCACTAGAATGGGC 59.456 55.000 0.00 0.00 45.38 5.36
261 262 3.065575 GTCCACTAGAATGGGCGTG 57.934 57.895 0.00 0.00 40.49 5.34
262 263 0.249398 GTCCACTAGAATGGGCGTGT 59.751 55.000 0.00 0.00 40.49 4.49
263 264 1.479323 GTCCACTAGAATGGGCGTGTA 59.521 52.381 0.00 0.00 40.49 2.90
264 265 2.093869 GTCCACTAGAATGGGCGTGTAA 60.094 50.000 0.00 0.00 40.49 2.41
265 266 2.167693 TCCACTAGAATGGGCGTGTAAG 59.832 50.000 0.00 0.00 40.49 2.34
266 267 2.550978 CACTAGAATGGGCGTGTAAGG 58.449 52.381 0.00 0.00 0.00 2.69
267 268 2.167693 CACTAGAATGGGCGTGTAAGGA 59.832 50.000 0.00 0.00 0.00 3.36
268 269 2.167900 ACTAGAATGGGCGTGTAAGGAC 59.832 50.000 0.00 0.00 0.00 3.85
269 270 1.276622 AGAATGGGCGTGTAAGGACT 58.723 50.000 0.00 0.00 0.00 3.85
270 271 1.207329 AGAATGGGCGTGTAAGGACTC 59.793 52.381 0.00 0.00 0.00 3.36
271 272 0.252197 AATGGGCGTGTAAGGACTCC 59.748 55.000 0.00 0.00 0.00 3.85
272 273 0.907704 ATGGGCGTGTAAGGACTCCA 60.908 55.000 0.00 0.00 0.00 3.86
273 274 1.218316 GGGCGTGTAAGGACTCCAG 59.782 63.158 0.00 0.00 0.00 3.86
274 275 1.255667 GGGCGTGTAAGGACTCCAGA 61.256 60.000 0.00 0.00 0.00 3.86
275 276 0.824759 GGCGTGTAAGGACTCCAGAT 59.175 55.000 0.00 0.00 0.00 2.90
276 277 1.207329 GGCGTGTAAGGACTCCAGATT 59.793 52.381 0.00 0.00 0.00 2.40
277 278 2.354805 GGCGTGTAAGGACTCCAGATTT 60.355 50.000 0.00 0.00 0.00 2.17
278 279 2.930682 GCGTGTAAGGACTCCAGATTTC 59.069 50.000 0.00 0.00 0.00 2.17
279 280 3.616560 GCGTGTAAGGACTCCAGATTTCA 60.617 47.826 0.00 0.00 0.00 2.69
280 281 4.759782 CGTGTAAGGACTCCAGATTTCAT 58.240 43.478 0.00 0.00 0.00 2.57
281 282 5.178797 CGTGTAAGGACTCCAGATTTCATT 58.821 41.667 0.00 0.00 0.00 2.57
282 283 5.063944 CGTGTAAGGACTCCAGATTTCATTG 59.936 44.000 0.00 0.00 0.00 2.82
283 284 4.943705 TGTAAGGACTCCAGATTTCATTGC 59.056 41.667 0.00 0.00 0.00 3.56
284 285 3.010200 AGGACTCCAGATTTCATTGCC 57.990 47.619 0.00 0.00 0.00 4.52
285 286 2.309755 AGGACTCCAGATTTCATTGCCA 59.690 45.455 0.00 0.00 0.00 4.92
286 287 2.424956 GGACTCCAGATTTCATTGCCAC 59.575 50.000 0.00 0.00 0.00 5.01
287 288 3.350833 GACTCCAGATTTCATTGCCACT 58.649 45.455 0.00 0.00 0.00 4.00
288 289 3.760684 GACTCCAGATTTCATTGCCACTT 59.239 43.478 0.00 0.00 0.00 3.16
289 290 4.154942 ACTCCAGATTTCATTGCCACTTT 58.845 39.130 0.00 0.00 0.00 2.66
290 291 4.590222 ACTCCAGATTTCATTGCCACTTTT 59.410 37.500 0.00 0.00 0.00 2.27
291 292 4.885413 TCCAGATTTCATTGCCACTTTTG 58.115 39.130 0.00 0.00 0.00 2.44
292 293 4.588106 TCCAGATTTCATTGCCACTTTTGA 59.412 37.500 0.00 0.00 0.00 2.69
293 294 5.070180 TCCAGATTTCATTGCCACTTTTGAA 59.930 36.000 0.00 0.00 0.00 2.69
294 295 5.759273 CCAGATTTCATTGCCACTTTTGAAA 59.241 36.000 0.00 0.00 40.99 2.69
295 296 6.073440 CCAGATTTCATTGCCACTTTTGAAAG 60.073 38.462 2.06 2.06 40.32 2.62
296 297 5.467735 AGATTTCATTGCCACTTTTGAAAGC 59.532 36.000 3.48 4.78 42.03 3.51
297 298 3.815856 TCATTGCCACTTTTGAAAGCA 57.184 38.095 3.48 0.00 39.63 3.91
298 299 4.339872 TCATTGCCACTTTTGAAAGCAT 57.660 36.364 3.48 0.00 39.63 3.79
299 300 4.309099 TCATTGCCACTTTTGAAAGCATC 58.691 39.130 3.48 0.00 39.63 3.91
300 301 2.818130 TGCCACTTTTGAAAGCATCC 57.182 45.000 3.48 0.00 39.63 3.51
301 302 2.037901 TGCCACTTTTGAAAGCATCCA 58.962 42.857 3.48 0.00 39.63 3.41
302 303 2.224018 TGCCACTTTTGAAAGCATCCAC 60.224 45.455 3.48 0.00 39.63 4.02
303 304 2.036346 GCCACTTTTGAAAGCATCCACT 59.964 45.455 3.48 0.00 39.63 4.00
304 305 3.255642 GCCACTTTTGAAAGCATCCACTA 59.744 43.478 3.48 0.00 39.63 2.74
305 306 4.616835 GCCACTTTTGAAAGCATCCACTAG 60.617 45.833 3.48 0.00 39.63 2.57
306 307 4.520492 CCACTTTTGAAAGCATCCACTAGT 59.480 41.667 3.48 0.00 39.63 2.57
307 308 5.010012 CCACTTTTGAAAGCATCCACTAGTT 59.990 40.000 0.00 0.00 39.63 2.24
308 309 6.145535 CACTTTTGAAAGCATCCACTAGTTC 58.854 40.000 0.00 0.00 39.63 3.01
309 310 5.241728 ACTTTTGAAAGCATCCACTAGTTCC 59.758 40.000 0.00 0.00 39.63 3.62
310 311 4.365514 TTGAAAGCATCCACTAGTTCCA 57.634 40.909 0.00 0.00 0.00 3.53
311 312 3.942829 TGAAAGCATCCACTAGTTCCAG 58.057 45.455 0.00 0.00 0.00 3.86
312 313 3.274288 GAAAGCATCCACTAGTTCCAGG 58.726 50.000 0.00 0.00 0.00 4.45
313 314 0.543749 AGCATCCACTAGTTCCAGGC 59.456 55.000 0.00 0.00 0.00 4.85
314 315 0.253044 GCATCCACTAGTTCCAGGCA 59.747 55.000 0.00 0.00 0.00 4.75
315 316 1.340017 GCATCCACTAGTTCCAGGCAA 60.340 52.381 0.00 0.00 0.00 4.52
316 317 2.684927 GCATCCACTAGTTCCAGGCAAT 60.685 50.000 0.00 0.00 0.00 3.56
317 318 3.209410 CATCCACTAGTTCCAGGCAATC 58.791 50.000 0.00 0.00 0.00 2.67
318 319 2.265367 TCCACTAGTTCCAGGCAATCA 58.735 47.619 0.00 0.00 0.00 2.57
319 320 2.237143 TCCACTAGTTCCAGGCAATCAG 59.763 50.000 0.00 0.00 0.00 2.90
320 321 2.237143 CCACTAGTTCCAGGCAATCAGA 59.763 50.000 0.00 0.00 0.00 3.27
321 322 3.118112 CCACTAGTTCCAGGCAATCAGAT 60.118 47.826 0.00 0.00 0.00 2.90
322 323 4.521146 CACTAGTTCCAGGCAATCAGATT 58.479 43.478 0.00 0.00 0.00 2.40
323 324 4.574013 CACTAGTTCCAGGCAATCAGATTC 59.426 45.833 0.00 0.00 0.00 2.52
324 325 3.010200 AGTTCCAGGCAATCAGATTCC 57.990 47.619 0.00 0.00 0.00 3.01
325 326 2.309755 AGTTCCAGGCAATCAGATTCCA 59.690 45.455 11.86 0.00 0.00 3.53
326 327 2.424956 GTTCCAGGCAATCAGATTCCAC 59.575 50.000 11.86 0.00 0.00 4.02
327 328 1.918262 TCCAGGCAATCAGATTCCACT 59.082 47.619 11.86 1.31 0.00 4.00
328 329 2.022195 CCAGGCAATCAGATTCCACTG 58.978 52.381 11.86 10.78 39.02 3.66
329 330 2.619849 CCAGGCAATCAGATTCCACTGT 60.620 50.000 13.37 0.00 38.79 3.55
330 331 3.087031 CAGGCAATCAGATTCCACTGTT 58.913 45.455 11.86 0.00 38.79 3.16
331 332 4.264253 CAGGCAATCAGATTCCACTGTTA 58.736 43.478 11.86 0.00 38.79 2.41
332 333 4.095483 CAGGCAATCAGATTCCACTGTTAC 59.905 45.833 11.86 0.00 38.79 2.50
333 334 4.018960 AGGCAATCAGATTCCACTGTTACT 60.019 41.667 11.86 0.00 38.79 2.24
334 335 4.333926 GGCAATCAGATTCCACTGTTACTC 59.666 45.833 0.00 0.00 38.79 2.59
335 336 5.181748 GCAATCAGATTCCACTGTTACTCT 58.818 41.667 0.00 0.00 38.79 3.24
336 337 5.064452 GCAATCAGATTCCACTGTTACTCTG 59.936 44.000 0.00 0.00 38.79 3.35
337 338 4.808414 TCAGATTCCACTGTTACTCTGG 57.192 45.455 0.00 0.00 38.79 3.86
338 339 4.416516 TCAGATTCCACTGTTACTCTGGA 58.583 43.478 0.00 0.00 38.79 3.86
339 340 4.838423 TCAGATTCCACTGTTACTCTGGAA 59.162 41.667 13.84 13.84 45.87 3.53
340 341 4.932200 CAGATTCCACTGTTACTCTGGAAC 59.068 45.833 13.78 9.56 44.88 3.62
341 342 4.593206 AGATTCCACTGTTACTCTGGAACA 59.407 41.667 13.78 0.00 44.88 3.18
342 343 4.974645 TTCCACTGTTACTCTGGAACAT 57.025 40.909 9.30 0.00 38.83 2.71
343 344 4.537135 TCCACTGTTACTCTGGAACATC 57.463 45.455 0.00 0.00 38.20 3.06
344 345 3.260884 TCCACTGTTACTCTGGAACATCC 59.739 47.826 0.00 0.00 38.20 3.51
345 346 3.261897 CCACTGTTACTCTGGAACATCCT 59.738 47.826 0.00 0.00 38.20 3.24
346 347 4.499183 CACTGTTACTCTGGAACATCCTC 58.501 47.826 0.00 0.00 38.20 3.71
347 348 4.221703 CACTGTTACTCTGGAACATCCTCT 59.778 45.833 0.00 0.00 38.20 3.69
348 349 4.841246 ACTGTTACTCTGGAACATCCTCTT 59.159 41.667 0.00 0.00 38.20 2.85
349 350 5.308237 ACTGTTACTCTGGAACATCCTCTTT 59.692 40.000 0.00 0.00 38.20 2.52
350 351 5.794894 TGTTACTCTGGAACATCCTCTTTC 58.205 41.667 0.00 0.00 38.20 2.62
351 352 5.306937 TGTTACTCTGGAACATCCTCTTTCA 59.693 40.000 0.00 0.00 38.20 2.69
352 353 4.982241 ACTCTGGAACATCCTCTTTCAA 57.018 40.909 0.00 0.00 38.20 2.69
353 354 5.310409 ACTCTGGAACATCCTCTTTCAAA 57.690 39.130 0.00 0.00 38.20 2.69
354 355 5.312079 ACTCTGGAACATCCTCTTTCAAAG 58.688 41.667 0.00 0.00 38.20 2.77
355 356 5.072329 ACTCTGGAACATCCTCTTTCAAAGA 59.928 40.000 0.00 0.00 38.20 2.52
356 357 5.555017 TCTGGAACATCCTCTTTCAAAGAG 58.445 41.667 18.99 18.99 46.60 2.85
357 358 4.155644 CTGGAACATCCTCTTTCAAAGAGC 59.844 45.833 20.30 6.64 46.06 4.09
358 359 6.263710 CTGGAACATCCTCTTTCAAAGAGCA 61.264 44.000 20.30 7.49 46.06 4.26
359 360 7.524068 CTGGAACATCCTCTTTCAAAGAGCAT 61.524 42.308 20.30 9.70 46.06 3.79
360 361 9.223557 CTGGAACATCCTCTTTCAAAGAGCATC 62.224 44.444 20.30 12.48 46.06 3.91
371 372 4.844420 GAGCATCTTCAGACCCCG 57.156 61.111 0.00 0.00 0.00 5.73
372 373 1.901085 GAGCATCTTCAGACCCCGT 59.099 57.895 0.00 0.00 0.00 5.28
373 374 0.250513 GAGCATCTTCAGACCCCGTT 59.749 55.000 0.00 0.00 0.00 4.44
374 375 0.693049 AGCATCTTCAGACCCCGTTT 59.307 50.000 0.00 0.00 0.00 3.60
375 376 1.073923 AGCATCTTCAGACCCCGTTTT 59.926 47.619 0.00 0.00 0.00 2.43
376 377 2.304761 AGCATCTTCAGACCCCGTTTTA 59.695 45.455 0.00 0.00 0.00 1.52
377 378 2.418976 GCATCTTCAGACCCCGTTTTAC 59.581 50.000 0.00 0.00 0.00 2.01
378 379 3.868754 GCATCTTCAGACCCCGTTTTACT 60.869 47.826 0.00 0.00 0.00 2.24
379 380 3.396260 TCTTCAGACCCCGTTTTACTG 57.604 47.619 0.00 0.00 0.00 2.74
380 381 1.804748 CTTCAGACCCCGTTTTACTGC 59.195 52.381 0.00 0.00 0.00 4.40
381 382 0.759959 TCAGACCCCGTTTTACTGCA 59.240 50.000 0.00 0.00 0.00 4.41
382 383 1.141254 TCAGACCCCGTTTTACTGCAA 59.859 47.619 0.00 0.00 0.00 4.08
383 384 1.535462 CAGACCCCGTTTTACTGCAAG 59.465 52.381 0.00 0.00 42.29 4.01
384 385 0.240145 GACCCCGTTTTACTGCAAGC 59.760 55.000 0.00 0.00 37.60 4.01
385 386 1.209127 CCCCGTTTTACTGCAAGCG 59.791 57.895 0.00 0.00 37.60 4.68
386 387 1.442017 CCCGTTTTACTGCAAGCGC 60.442 57.895 0.00 0.00 37.60 5.92
387 388 1.442017 CCGTTTTACTGCAAGCGCC 60.442 57.895 2.29 0.00 37.60 6.53
388 389 1.574428 CGTTTTACTGCAAGCGCCT 59.426 52.632 2.29 0.00 37.60 5.52
389 390 0.452784 CGTTTTACTGCAAGCGCCTC 60.453 55.000 2.29 0.00 37.60 4.70
390 391 0.875059 GTTTTACTGCAAGCGCCTCT 59.125 50.000 2.29 0.00 37.60 3.69
391 392 0.874390 TTTTACTGCAAGCGCCTCTG 59.126 50.000 2.29 0.00 37.60 3.35
392 393 1.577328 TTTACTGCAAGCGCCTCTGC 61.577 55.000 17.23 17.23 37.60 4.26
394 395 1.604147 TACTGCAAGCGCCTCTGCTA 61.604 55.000 22.46 9.13 46.60 3.49
408 409 4.333926 GCCTCTGCTATTAACCTCAAACAG 59.666 45.833 0.00 0.00 33.53 3.16
410 411 5.582665 CCTCTGCTATTAACCTCAAACAGAC 59.417 44.000 0.00 0.00 0.00 3.51
432 433 2.365635 CCAGACCATCCCGGACCT 60.366 66.667 0.73 0.00 38.63 3.85
514 516 3.422603 CGAAACCAATACGTGAACTTCCG 60.423 47.826 0.00 0.00 0.00 4.30
607 610 0.180406 CCATAGACTTCAACCCCGGG 59.820 60.000 15.80 15.80 0.00 5.73
663 666 2.505819 CCCACATAGAGCCAAAGGTAGT 59.494 50.000 0.00 0.00 0.00 2.73
724 727 5.239963 TCGCCCTTAAGAGAAAACGATTTTT 59.760 36.000 3.36 0.00 37.65 1.94
1052 1055 4.752594 TTCGGGAAGGGGAGGGGG 62.753 72.222 0.00 0.00 0.00 5.40
1239 1242 2.026879 GAGCACCTCTCGATCGCC 59.973 66.667 11.09 0.00 31.20 5.54
1623 1626 3.740321 GCGAGGAAGAAGATGATGATGAC 59.260 47.826 0.00 0.00 0.00 3.06
1902 1905 3.146066 CGAAGAGTATGAGGAGGAGGAG 58.854 54.545 0.00 0.00 0.00 3.69
2039 2048 1.419387 GGAGGAGGTTGAGGATGATGG 59.581 57.143 0.00 0.00 0.00 3.51
2040 2049 2.122768 GAGGAGGTTGAGGATGATGGT 58.877 52.381 0.00 0.00 0.00 3.55
2041 2050 1.842562 AGGAGGTTGAGGATGATGGTG 59.157 52.381 0.00 0.00 0.00 4.17
2163 2172 5.368816 TGATGAGGATGAGAATGGTGAGATT 59.631 40.000 0.00 0.00 0.00 2.40
2248 2257 5.473931 ACGATGCTGATGATGAGGTATAAC 58.526 41.667 0.00 0.00 0.00 1.89
2250 2259 5.928264 CGATGCTGATGATGAGGTATAACAA 59.072 40.000 0.00 0.00 0.00 2.83
2251 2260 6.592994 CGATGCTGATGATGAGGTATAACAAT 59.407 38.462 0.00 0.00 0.00 2.71
2252 2261 7.118825 CGATGCTGATGATGAGGTATAACAATT 59.881 37.037 0.00 0.00 0.00 2.32
2311 2323 0.388659 TGCATGTTCAGTTTGTGGGC 59.611 50.000 0.00 0.00 0.00 5.36
2336 2348 8.276325 GCGATTGTTCTAGTCATATTGTTTAGG 58.724 37.037 0.00 0.00 0.00 2.69
2358 2373 5.731678 AGGAAGATAACTATTGACCACCCTT 59.268 40.000 0.00 0.00 0.00 3.95
2400 2415 4.574828 TCAACTGTGGCTAGTTTTTCAGTC 59.425 41.667 5.22 0.00 38.78 3.51
2403 2418 4.130118 CTGTGGCTAGTTTTTCAGTCACT 58.870 43.478 7.72 0.00 45.52 3.41
2522 2537 1.763968 TGTCAGATCCCCACTCGTAG 58.236 55.000 0.00 0.00 0.00 3.51
2526 2541 1.950909 CAGATCCCCACTCGTAGTCTC 59.049 57.143 0.00 0.00 0.00 3.36
2650 2665 4.539726 TGCTCCCAAGATATTGCTTGAAT 58.460 39.130 5.74 0.00 46.31 2.57
2694 2709 1.272490 TGTGAAAGCTCTGTACCCTCG 59.728 52.381 0.00 0.00 0.00 4.63
2773 2790 6.955851 TGGGGATTCTGATTTCTTCATCTTTT 59.044 34.615 0.00 0.00 32.72 2.27
2902 2928 9.586732 TTTGGGAATAATCGAAGATTTGGATAT 57.413 29.630 0.34 0.00 45.12 1.63
3039 3065 9.555727 GTATTTATTTGTGGGCTTAGACAGATA 57.444 33.333 0.00 0.00 0.00 1.98
3043 3069 9.725019 TTATTTGTGGGCTTAGACAGATATATG 57.275 33.333 0.00 0.00 0.00 1.78
3047 3073 4.777896 TGGGCTTAGACAGATATATGACCC 59.222 45.833 3.93 5.56 0.00 4.46
3059 3085 6.149973 CAGATATATGACCCGATGCATGTTTT 59.850 38.462 2.46 0.00 0.00 2.43
3060 3086 7.334171 CAGATATATGACCCGATGCATGTTTTA 59.666 37.037 2.46 0.00 0.00 1.52
3061 3087 5.947228 ATATGACCCGATGCATGTTTTAG 57.053 39.130 2.46 0.00 0.00 1.85
3062 3088 2.364632 TGACCCGATGCATGTTTTAGG 58.635 47.619 2.46 0.00 0.00 2.69
3073 3099 6.455360 TGCATGTTTTAGGAAGATGGAATC 57.545 37.500 0.00 0.00 46.04 2.52
3093 3119 7.340232 TGGAATCCTCCTCATATTTGTTTCTTG 59.660 37.037 0.00 0.00 42.94 3.02
3132 3158 2.256117 ATAGCTTCGGTAATGGCCAC 57.744 50.000 8.16 0.00 0.00 5.01
3136 3162 2.969950 AGCTTCGGTAATGGCCACTATA 59.030 45.455 8.16 0.00 0.00 1.31
3140 3174 4.967084 TCGGTAATGGCCACTATATTGT 57.033 40.909 8.16 0.00 0.00 2.71
3141 3175 5.298989 TCGGTAATGGCCACTATATTGTT 57.701 39.130 8.16 0.00 0.00 2.83
3142 3176 5.686753 TCGGTAATGGCCACTATATTGTTT 58.313 37.500 8.16 0.00 0.00 2.83
3143 3177 6.828788 TCGGTAATGGCCACTATATTGTTTA 58.171 36.000 8.16 0.00 0.00 2.01
3144 3178 7.455058 TCGGTAATGGCCACTATATTGTTTAT 58.545 34.615 8.16 0.00 0.00 1.40
3145 3179 7.940137 TCGGTAATGGCCACTATATTGTTTATT 59.060 33.333 8.16 0.00 0.00 1.40
3146 3180 8.234546 CGGTAATGGCCACTATATTGTTTATTC 58.765 37.037 8.16 0.00 0.00 1.75
3147 3181 8.234546 GGTAATGGCCACTATATTGTTTATTCG 58.765 37.037 8.16 0.00 0.00 3.34
3152 3186 5.997385 CCACTATATTGTTTATTCGGTGGC 58.003 41.667 0.00 0.00 35.92 5.01
3164 3198 4.900635 ATTCGGTGGCATATTTTCTGTC 57.099 40.909 0.00 0.00 0.00 3.51
3173 3207 9.382275 GGTGGCATATTTTCTGTCATTTTATTT 57.618 29.630 0.00 0.00 29.77 1.40
3305 3340 7.897575 TTTGTTTTGTTCTTGTTATGCTGTT 57.102 28.000 0.00 0.00 0.00 3.16
3459 3494 2.992817 AATTGTGACGCCCCAAGCCA 62.993 55.000 0.00 0.00 38.78 4.75
3500 3535 2.128035 GACTTTGATATCGCTGACCCG 58.872 52.381 0.00 0.00 0.00 5.28
3556 3591 2.501223 GATGACGACGAGGGTGGCAA 62.501 60.000 0.00 0.00 0.00 4.52
3647 3682 5.163673 CGACGATGAGGATGATGATACTGAT 60.164 44.000 0.00 0.00 0.00 2.90
3726 3767 6.399743 CCCTTCTCAGGTAGAAAGAAGTAAC 58.600 44.000 9.70 0.00 43.66 2.50
3741 3782 0.393537 GTAACCAGGAGCAGCAGCAT 60.394 55.000 3.17 0.00 45.49 3.79
3956 4000 1.701292 GGTAGTTACAACACCCCAGGT 59.299 52.381 0.00 0.00 35.62 4.00
3974 4018 0.034960 GTGGCTTCCCTCCTTCCTTC 60.035 60.000 0.00 0.00 0.00 3.46
3993 4037 2.945278 TCGAAATTCCTGTTGCATTGC 58.055 42.857 0.46 0.46 0.00 3.56
4086 4142 4.922692 CGTTGCCTGCATTTGAAAATCTTA 59.077 37.500 0.00 0.00 0.00 2.10
4148 4204 4.682859 GCTTCTTACTGATGATGACTGGCT 60.683 45.833 0.00 0.00 0.00 4.75
4341 4405 3.555324 TGTGCTCCTTGCCGGTCA 61.555 61.111 1.90 0.00 42.00 4.02
4669 4744 1.202710 TCGAGGAGGAGAGAAGATCCG 60.203 57.143 0.00 0.00 42.02 4.18
4690 4765 2.480610 CGGATTTGGGTGGATGCCG 61.481 63.158 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179200 GCCACATTAACAAGCCGACG 60.179 55.000 0.00 0.00 0.00 5.12
1 2 1.135689 CAGCCACATTAACAAGCCGAC 60.136 52.381 0.00 0.00 0.00 4.79
2 3 1.164411 CAGCCACATTAACAAGCCGA 58.836 50.000 0.00 0.00 0.00 5.54
3 4 0.456653 GCAGCCACATTAACAAGCCG 60.457 55.000 0.00 0.00 0.00 5.52
4 5 0.890683 AGCAGCCACATTAACAAGCC 59.109 50.000 0.00 0.00 0.00 4.35
5 6 1.541147 TGAGCAGCCACATTAACAAGC 59.459 47.619 0.00 0.00 0.00 4.01
6 7 3.693085 AGATGAGCAGCCACATTAACAAG 59.307 43.478 4.50 0.00 0.00 3.16
7 8 3.689347 AGATGAGCAGCCACATTAACAA 58.311 40.909 4.50 0.00 0.00 2.83
8 9 3.354948 AGATGAGCAGCCACATTAACA 57.645 42.857 4.50 0.00 0.00 2.41
9 10 7.227512 AGTTAATAGATGAGCAGCCACATTAAC 59.772 37.037 17.27 17.27 37.65 2.01
10 11 7.282585 AGTTAATAGATGAGCAGCCACATTAA 58.717 34.615 4.50 4.58 0.00 1.40
11 12 6.830912 AGTTAATAGATGAGCAGCCACATTA 58.169 36.000 4.50 1.44 0.00 1.90
12 13 5.688807 AGTTAATAGATGAGCAGCCACATT 58.311 37.500 4.50 0.59 0.00 2.71
13 14 5.301835 AGTTAATAGATGAGCAGCCACAT 57.698 39.130 2.78 2.78 0.00 3.21
14 15 4.760530 AGTTAATAGATGAGCAGCCACA 57.239 40.909 0.00 0.00 0.00 4.17
15 16 6.284459 ACTTAGTTAATAGATGAGCAGCCAC 58.716 40.000 0.00 0.00 0.00 5.01
16 17 6.325028 AGACTTAGTTAATAGATGAGCAGCCA 59.675 38.462 0.00 0.00 0.00 4.75
17 18 6.754193 AGACTTAGTTAATAGATGAGCAGCC 58.246 40.000 0.00 0.00 0.00 4.85
18 19 7.708752 ACAAGACTTAGTTAATAGATGAGCAGC 59.291 37.037 0.00 0.00 0.00 5.25
58 59 9.765795 CCGGAGTAGAATGAAAAATAACTAGAT 57.234 33.333 0.00 0.00 0.00 1.98
59 60 8.974238 TCCGGAGTAGAATGAAAAATAACTAGA 58.026 33.333 0.00 0.00 0.00 2.43
60 61 9.765795 ATCCGGAGTAGAATGAAAAATAACTAG 57.234 33.333 11.34 0.00 0.00 2.57
62 63 8.893727 CAATCCGGAGTAGAATGAAAAATAACT 58.106 33.333 11.34 0.00 0.00 2.24
63 64 8.674607 ACAATCCGGAGTAGAATGAAAAATAAC 58.325 33.333 11.34 0.00 0.00 1.89
64 65 8.801882 ACAATCCGGAGTAGAATGAAAAATAA 57.198 30.769 11.34 0.00 0.00 1.40
66 67 8.980481 ATACAATCCGGAGTAGAATGAAAAAT 57.020 30.769 11.34 0.00 0.00 1.82
67 68 7.497909 GGATACAATCCGGAGTAGAATGAAAAA 59.502 37.037 11.34 0.00 40.13 1.94
68 69 6.990349 GGATACAATCCGGAGTAGAATGAAAA 59.010 38.462 11.34 0.00 40.13 2.29
69 70 6.522054 GGATACAATCCGGAGTAGAATGAAA 58.478 40.000 11.34 0.00 40.13 2.69
70 71 6.097915 GGATACAATCCGGAGTAGAATGAA 57.902 41.667 11.34 0.00 40.13 2.57
71 72 5.723672 GGATACAATCCGGAGTAGAATGA 57.276 43.478 11.34 0.00 40.13 2.57
83 84 2.599677 AGAGTCTCCCGGATACAATCC 58.400 52.381 0.73 0.00 46.22 3.01
84 85 3.385111 ACAAGAGTCTCCCGGATACAATC 59.615 47.826 0.73 0.00 0.00 2.67
85 86 3.375699 ACAAGAGTCTCCCGGATACAAT 58.624 45.455 0.73 0.00 0.00 2.71
86 87 2.816411 ACAAGAGTCTCCCGGATACAA 58.184 47.619 0.73 0.00 0.00 2.41
87 88 2.526888 ACAAGAGTCTCCCGGATACA 57.473 50.000 0.73 0.00 0.00 2.29
88 89 4.400120 AGATACAAGAGTCTCCCGGATAC 58.600 47.826 0.73 0.00 0.00 2.24
89 90 4.726035 AGATACAAGAGTCTCCCGGATA 57.274 45.455 0.73 0.00 0.00 2.59
90 91 3.603965 AGATACAAGAGTCTCCCGGAT 57.396 47.619 0.73 0.00 0.00 4.18
91 92 3.383698 AAGATACAAGAGTCTCCCGGA 57.616 47.619 0.73 0.00 0.00 5.14
92 93 3.430929 CCAAAGATACAAGAGTCTCCCGG 60.431 52.174 0.00 0.00 0.00 5.73
93 94 3.195825 ACCAAAGATACAAGAGTCTCCCG 59.804 47.826 0.00 0.00 0.00 5.14
94 95 4.828072 ACCAAAGATACAAGAGTCTCCC 57.172 45.455 0.00 0.00 0.00 4.30
95 96 7.278868 CACATAACCAAAGATACAAGAGTCTCC 59.721 40.741 0.00 0.00 0.00 3.71
96 97 8.035394 TCACATAACCAAAGATACAAGAGTCTC 58.965 37.037 0.00 0.00 0.00 3.36
97 98 7.907389 TCACATAACCAAAGATACAAGAGTCT 58.093 34.615 0.00 0.00 0.00 3.24
98 99 8.723942 ATCACATAACCAAAGATACAAGAGTC 57.276 34.615 0.00 0.00 0.00 3.36
99 100 8.321353 TGATCACATAACCAAAGATACAAGAGT 58.679 33.333 0.00 0.00 0.00 3.24
100 101 8.722480 TGATCACATAACCAAAGATACAAGAG 57.278 34.615 0.00 0.00 0.00 2.85
101 102 9.685276 ATTGATCACATAACCAAAGATACAAGA 57.315 29.630 0.00 0.00 0.00 3.02
107 108 9.193806 AGCTTTATTGATCACATAACCAAAGAT 57.806 29.630 0.00 0.00 0.00 2.40
108 109 8.461222 CAGCTTTATTGATCACATAACCAAAGA 58.539 33.333 0.00 0.00 0.00 2.52
109 110 8.461222 TCAGCTTTATTGATCACATAACCAAAG 58.539 33.333 0.00 1.72 0.00 2.77
110 111 8.347004 TCAGCTTTATTGATCACATAACCAAA 57.653 30.769 0.00 0.00 0.00 3.28
111 112 7.936496 TCAGCTTTATTGATCACATAACCAA 57.064 32.000 0.00 0.00 0.00 3.67
112 113 7.557358 ACATCAGCTTTATTGATCACATAACCA 59.443 33.333 0.00 0.00 33.14 3.67
113 114 7.934457 ACATCAGCTTTATTGATCACATAACC 58.066 34.615 0.00 0.00 33.14 2.85
114 115 9.443283 GAACATCAGCTTTATTGATCACATAAC 57.557 33.333 0.00 0.00 33.14 1.89
115 116 9.399797 AGAACATCAGCTTTATTGATCACATAA 57.600 29.630 0.00 0.79 33.14 1.90
116 117 8.969260 AGAACATCAGCTTTATTGATCACATA 57.031 30.769 0.00 0.00 33.14 2.29
117 118 7.876936 AGAACATCAGCTTTATTGATCACAT 57.123 32.000 0.00 0.00 33.14 3.21
118 119 8.791327 TTAGAACATCAGCTTTATTGATCACA 57.209 30.769 0.00 0.00 33.14 3.58
151 152 6.346096 TGGCACACTTTTTAGCTAGGTATAG 58.654 40.000 1.80 3.98 0.00 1.31
152 153 6.302535 TGGCACACTTTTTAGCTAGGTATA 57.697 37.500 1.80 0.00 0.00 1.47
153 154 5.174037 TGGCACACTTTTTAGCTAGGTAT 57.826 39.130 1.80 0.00 0.00 2.73
154 155 4.575885 CTGGCACACTTTTTAGCTAGGTA 58.424 43.478 0.00 0.00 32.73 3.08
155 156 3.412386 CTGGCACACTTTTTAGCTAGGT 58.588 45.455 0.00 0.00 32.73 3.08
156 157 2.162408 GCTGGCACACTTTTTAGCTAGG 59.838 50.000 0.00 0.00 36.29 3.02
157 158 3.077359 AGCTGGCACACTTTTTAGCTAG 58.923 45.455 0.00 0.00 39.50 3.42
158 159 3.140325 AGCTGGCACACTTTTTAGCTA 57.860 42.857 0.00 0.00 39.50 3.32
159 160 1.986882 AGCTGGCACACTTTTTAGCT 58.013 45.000 0.00 0.00 36.74 3.32
160 161 2.800881 AAGCTGGCACACTTTTTAGC 57.199 45.000 0.00 0.00 0.00 3.09
161 162 6.030228 GCTAATAAGCTGGCACACTTTTTAG 58.970 40.000 20.01 20.01 45.85 1.85
162 163 5.949735 GCTAATAAGCTGGCACACTTTTTA 58.050 37.500 3.57 6.00 45.85 1.52
163 164 4.809673 GCTAATAAGCTGGCACACTTTTT 58.190 39.130 3.57 5.26 45.85 1.94
164 165 4.440839 GCTAATAAGCTGGCACACTTTT 57.559 40.909 3.57 2.34 45.85 2.27
176 177 1.228657 CCCGCGGGAAGCTAATAAGC 61.229 60.000 41.82 0.00 45.59 3.09
177 178 2.914379 CCCGCGGGAAGCTAATAAG 58.086 57.895 41.82 6.81 45.59 1.73
194 195 0.316841 TGTTTCCTTTCGGCATTGCC 59.683 50.000 18.10 18.10 46.75 4.52
195 196 1.269448 TCTGTTTCCTTTCGGCATTGC 59.731 47.619 0.00 0.00 0.00 3.56
196 197 3.568538 CTTCTGTTTCCTTTCGGCATTG 58.431 45.455 0.00 0.00 0.00 2.82
197 198 2.558359 CCTTCTGTTTCCTTTCGGCATT 59.442 45.455 0.00 0.00 0.00 3.56
198 199 2.162681 CCTTCTGTTTCCTTTCGGCAT 58.837 47.619 0.00 0.00 0.00 4.40
199 200 1.604604 CCTTCTGTTTCCTTTCGGCA 58.395 50.000 0.00 0.00 0.00 5.69
200 201 0.881796 CCCTTCTGTTTCCTTTCGGC 59.118 55.000 0.00 0.00 0.00 5.54
201 202 2.561478 TCCCTTCTGTTTCCTTTCGG 57.439 50.000 0.00 0.00 0.00 4.30
202 203 3.440522 GGAATCCCTTCTGTTTCCTTTCG 59.559 47.826 0.00 0.00 35.74 3.46
203 204 4.407365 TGGAATCCCTTCTGTTTCCTTTC 58.593 43.478 0.00 0.00 38.73 2.62
204 205 4.469469 TGGAATCCCTTCTGTTTCCTTT 57.531 40.909 0.00 0.00 38.73 3.11
205 206 4.347607 CATGGAATCCCTTCTGTTTCCTT 58.652 43.478 0.00 0.00 38.73 3.36
206 207 3.879321 GCATGGAATCCCTTCTGTTTCCT 60.879 47.826 0.00 0.00 38.73 3.36
207 208 2.428530 GCATGGAATCCCTTCTGTTTCC 59.571 50.000 0.00 0.00 38.48 3.13
208 209 2.098117 CGCATGGAATCCCTTCTGTTTC 59.902 50.000 0.00 0.00 0.00 2.78
209 210 2.094675 CGCATGGAATCCCTTCTGTTT 58.905 47.619 0.00 0.00 0.00 2.83
210 211 1.755179 CGCATGGAATCCCTTCTGTT 58.245 50.000 0.00 0.00 0.00 3.16
211 212 0.749454 GCGCATGGAATCCCTTCTGT 60.749 55.000 0.30 0.00 0.00 3.41
212 213 0.465097 AGCGCATGGAATCCCTTCTG 60.465 55.000 11.47 0.00 0.00 3.02
213 214 1.131638 TAGCGCATGGAATCCCTTCT 58.868 50.000 11.47 0.00 0.00 2.85
214 215 1.967319 TTAGCGCATGGAATCCCTTC 58.033 50.000 11.47 0.00 0.00 3.46
215 216 2.664402 ATTAGCGCATGGAATCCCTT 57.336 45.000 11.47 0.00 0.00 3.95
216 217 2.158623 TGAATTAGCGCATGGAATCCCT 60.159 45.455 11.47 0.00 0.00 4.20
217 218 2.229792 TGAATTAGCGCATGGAATCCC 58.770 47.619 11.47 0.77 0.00 3.85
218 219 3.988379 TTGAATTAGCGCATGGAATCC 57.012 42.857 11.47 0.00 0.00 3.01
219 220 3.732721 GCTTTGAATTAGCGCATGGAATC 59.267 43.478 11.47 0.14 0.00 2.52
220 221 3.130869 TGCTTTGAATTAGCGCATGGAAT 59.869 39.130 11.47 0.02 41.54 3.01
221 222 2.491298 TGCTTTGAATTAGCGCATGGAA 59.509 40.909 11.47 0.00 41.54 3.53
222 223 2.090760 TGCTTTGAATTAGCGCATGGA 58.909 42.857 11.47 0.00 41.54 3.41
223 224 2.159338 ACTGCTTTGAATTAGCGCATGG 60.159 45.455 11.47 0.00 41.54 3.66
224 225 3.103738 GACTGCTTTGAATTAGCGCATG 58.896 45.455 11.47 0.00 41.54 4.06
225 226 2.098117 GGACTGCTTTGAATTAGCGCAT 59.902 45.455 11.47 0.00 41.54 4.73
226 227 1.468520 GGACTGCTTTGAATTAGCGCA 59.531 47.619 11.47 0.00 41.54 6.09
227 228 1.468520 TGGACTGCTTTGAATTAGCGC 59.531 47.619 0.00 0.00 41.54 5.92
228 229 2.744202 AGTGGACTGCTTTGAATTAGCG 59.256 45.455 0.00 0.00 41.54 4.26
229 230 5.178797 TCTAGTGGACTGCTTTGAATTAGC 58.821 41.667 0.00 0.00 39.10 3.09
230 231 7.201679 CCATTCTAGTGGACTGCTTTGAATTAG 60.202 40.741 0.00 0.00 42.02 1.73
231 232 6.599244 CCATTCTAGTGGACTGCTTTGAATTA 59.401 38.462 0.00 0.00 42.02 1.40
232 233 5.416952 CCATTCTAGTGGACTGCTTTGAATT 59.583 40.000 0.00 0.00 42.02 2.17
233 234 4.946157 CCATTCTAGTGGACTGCTTTGAAT 59.054 41.667 0.00 0.00 42.02 2.57
234 235 4.326826 CCATTCTAGTGGACTGCTTTGAA 58.673 43.478 0.00 0.00 42.02 2.69
235 236 3.307691 CCCATTCTAGTGGACTGCTTTGA 60.308 47.826 0.91 0.00 42.02 2.69
236 237 3.012518 CCCATTCTAGTGGACTGCTTTG 58.987 50.000 0.91 0.00 42.02 2.77
237 238 2.619074 GCCCATTCTAGTGGACTGCTTT 60.619 50.000 0.91 0.00 42.02 3.51
238 239 1.065126 GCCCATTCTAGTGGACTGCTT 60.065 52.381 0.91 0.00 42.02 3.91
239 240 0.543749 GCCCATTCTAGTGGACTGCT 59.456 55.000 0.91 0.00 42.02 4.24
240 241 0.811616 CGCCCATTCTAGTGGACTGC 60.812 60.000 0.91 0.00 42.02 4.40
241 242 0.537188 ACGCCCATTCTAGTGGACTG 59.463 55.000 0.91 0.00 42.02 3.51
242 243 0.537188 CACGCCCATTCTAGTGGACT 59.463 55.000 0.91 0.00 42.02 3.85
243 244 0.249398 ACACGCCCATTCTAGTGGAC 59.751 55.000 0.91 0.00 42.02 4.02
244 245 1.855295 TACACGCCCATTCTAGTGGA 58.145 50.000 0.91 0.00 42.02 4.02
245 246 2.550978 CTTACACGCCCATTCTAGTGG 58.449 52.381 0.00 0.00 38.78 4.00
246 247 2.167693 TCCTTACACGCCCATTCTAGTG 59.832 50.000 0.00 0.00 40.17 2.74
247 248 2.167900 GTCCTTACACGCCCATTCTAGT 59.832 50.000 0.00 0.00 0.00 2.57
248 249 2.431057 AGTCCTTACACGCCCATTCTAG 59.569 50.000 0.00 0.00 0.00 2.43
249 250 2.429610 GAGTCCTTACACGCCCATTCTA 59.570 50.000 0.00 0.00 0.00 2.10
250 251 1.207329 GAGTCCTTACACGCCCATTCT 59.793 52.381 0.00 0.00 0.00 2.40
251 252 1.653151 GAGTCCTTACACGCCCATTC 58.347 55.000 0.00 0.00 0.00 2.67
252 253 0.252197 GGAGTCCTTACACGCCCATT 59.748 55.000 0.41 0.00 30.27 3.16
253 254 0.907704 TGGAGTCCTTACACGCCCAT 60.908 55.000 11.33 0.00 35.45 4.00
254 255 1.534476 TGGAGTCCTTACACGCCCA 60.534 57.895 11.33 0.00 35.45 5.36
255 256 1.218316 CTGGAGTCCTTACACGCCC 59.782 63.158 11.33 0.00 35.45 6.13
256 257 0.824759 ATCTGGAGTCCTTACACGCC 59.175 55.000 11.33 0.00 36.80 5.68
257 258 2.674796 AATCTGGAGTCCTTACACGC 57.325 50.000 11.33 0.00 0.00 5.34
258 259 4.188247 TGAAATCTGGAGTCCTTACACG 57.812 45.455 11.33 0.00 0.00 4.49
259 260 5.163713 GCAATGAAATCTGGAGTCCTTACAC 60.164 44.000 11.33 0.00 0.00 2.90
260 261 4.943705 GCAATGAAATCTGGAGTCCTTACA 59.056 41.667 11.33 2.99 0.00 2.41
261 262 4.336713 GGCAATGAAATCTGGAGTCCTTAC 59.663 45.833 11.33 0.00 0.00 2.34
262 263 4.018506 TGGCAATGAAATCTGGAGTCCTTA 60.019 41.667 11.33 0.00 0.00 2.69
263 264 3.245371 TGGCAATGAAATCTGGAGTCCTT 60.245 43.478 11.33 0.00 0.00 3.36
264 265 2.309755 TGGCAATGAAATCTGGAGTCCT 59.690 45.455 11.33 0.00 0.00 3.85
265 266 2.424956 GTGGCAATGAAATCTGGAGTCC 59.575 50.000 0.73 0.73 0.00 3.85
266 267 3.350833 AGTGGCAATGAAATCTGGAGTC 58.649 45.455 0.00 0.00 0.00 3.36
267 268 3.446442 AGTGGCAATGAAATCTGGAGT 57.554 42.857 0.00 0.00 0.00 3.85
268 269 4.796038 AAAGTGGCAATGAAATCTGGAG 57.204 40.909 0.00 0.00 0.00 3.86
269 270 4.588106 TCAAAAGTGGCAATGAAATCTGGA 59.412 37.500 0.00 0.00 0.00 3.86
270 271 4.885413 TCAAAAGTGGCAATGAAATCTGG 58.115 39.130 0.00 0.00 0.00 3.86
271 272 6.565247 GCTTTCAAAAGTGGCAATGAAATCTG 60.565 38.462 15.02 8.45 40.03 2.90
272 273 5.467735 GCTTTCAAAAGTGGCAATGAAATCT 59.532 36.000 15.02 0.00 40.03 2.40
273 274 5.236911 TGCTTTCAAAAGTGGCAATGAAATC 59.763 36.000 15.02 12.70 40.03 2.17
274 275 5.124645 TGCTTTCAAAAGTGGCAATGAAAT 58.875 33.333 15.02 0.00 40.03 2.17
275 276 4.511527 TGCTTTCAAAAGTGGCAATGAAA 58.488 34.783 14.32 14.32 38.92 2.69
276 277 4.134379 TGCTTTCAAAAGTGGCAATGAA 57.866 36.364 4.54 0.00 38.28 2.57
277 278 3.815856 TGCTTTCAAAAGTGGCAATGA 57.184 38.095 4.54 0.00 38.28 2.57
278 279 3.434299 GGATGCTTTCAAAAGTGGCAATG 59.566 43.478 4.54 0.00 38.28 2.82
279 280 3.071312 TGGATGCTTTCAAAAGTGGCAAT 59.929 39.130 4.54 0.00 38.28 3.56
280 281 2.433604 TGGATGCTTTCAAAAGTGGCAA 59.566 40.909 4.54 0.00 38.28 4.52
281 282 2.037901 TGGATGCTTTCAAAAGTGGCA 58.962 42.857 4.54 0.00 38.28 4.92
282 283 2.036346 AGTGGATGCTTTCAAAAGTGGC 59.964 45.455 4.54 0.00 38.28 5.01
283 284 4.520492 ACTAGTGGATGCTTTCAAAAGTGG 59.480 41.667 0.00 0.00 38.28 4.00
284 285 5.695851 ACTAGTGGATGCTTTCAAAAGTG 57.304 39.130 0.00 0.00 38.28 3.16
285 286 5.241728 GGAACTAGTGGATGCTTTCAAAAGT 59.758 40.000 0.00 0.00 38.28 2.66
286 287 5.241506 TGGAACTAGTGGATGCTTTCAAAAG 59.758 40.000 0.00 0.00 39.03 2.27
287 288 5.136828 TGGAACTAGTGGATGCTTTCAAAA 58.863 37.500 0.00 0.00 0.00 2.44
288 289 4.724399 TGGAACTAGTGGATGCTTTCAAA 58.276 39.130 0.00 0.00 0.00 2.69
289 290 4.326826 CTGGAACTAGTGGATGCTTTCAA 58.673 43.478 0.00 0.00 0.00 2.69
290 291 3.307691 CCTGGAACTAGTGGATGCTTTCA 60.308 47.826 0.00 0.00 0.00 2.69
291 292 3.274288 CCTGGAACTAGTGGATGCTTTC 58.726 50.000 0.00 0.00 0.00 2.62
292 293 2.619074 GCCTGGAACTAGTGGATGCTTT 60.619 50.000 0.00 0.00 0.00 3.51
293 294 1.065126 GCCTGGAACTAGTGGATGCTT 60.065 52.381 0.00 0.00 0.00 3.91
294 295 0.543749 GCCTGGAACTAGTGGATGCT 59.456 55.000 0.00 0.00 0.00 3.79
295 296 0.253044 TGCCTGGAACTAGTGGATGC 59.747 55.000 0.00 0.00 0.00 3.91
296 297 2.787473 TTGCCTGGAACTAGTGGATG 57.213 50.000 0.00 0.00 0.00 3.51
297 298 2.846206 TGATTGCCTGGAACTAGTGGAT 59.154 45.455 0.00 0.00 0.00 3.41
298 299 2.237143 CTGATTGCCTGGAACTAGTGGA 59.763 50.000 0.00 0.00 0.00 4.02
299 300 2.237143 TCTGATTGCCTGGAACTAGTGG 59.763 50.000 0.00 0.00 0.00 4.00
300 301 3.616956 TCTGATTGCCTGGAACTAGTG 57.383 47.619 0.00 0.00 0.00 2.74
301 302 4.384647 GGAATCTGATTGCCTGGAACTAGT 60.385 45.833 7.78 0.00 0.00 2.57
302 303 4.133078 GGAATCTGATTGCCTGGAACTAG 58.867 47.826 7.78 0.00 0.00 2.57
303 304 3.523157 TGGAATCTGATTGCCTGGAACTA 59.477 43.478 17.58 0.00 0.00 2.24
304 305 2.309755 TGGAATCTGATTGCCTGGAACT 59.690 45.455 17.58 0.00 0.00 3.01
305 306 2.424956 GTGGAATCTGATTGCCTGGAAC 59.575 50.000 17.58 6.51 0.00 3.62
306 307 2.309755 AGTGGAATCTGATTGCCTGGAA 59.690 45.455 17.58 0.00 0.00 3.53
307 308 1.918262 AGTGGAATCTGATTGCCTGGA 59.082 47.619 17.58 0.00 0.00 3.86
308 309 2.022195 CAGTGGAATCTGATTGCCTGG 58.978 52.381 21.40 9.48 37.61 4.45
309 310 2.719739 ACAGTGGAATCTGATTGCCTG 58.280 47.619 24.52 24.52 38.63 4.85
310 311 3.446442 AACAGTGGAATCTGATTGCCT 57.554 42.857 17.58 11.79 38.63 4.75
311 312 4.265073 AGTAACAGTGGAATCTGATTGCC 58.735 43.478 17.58 13.47 38.63 4.52
312 313 5.064452 CAGAGTAACAGTGGAATCTGATTGC 59.936 44.000 15.73 14.15 37.03 3.56
313 314 5.583854 CCAGAGTAACAGTGGAATCTGATTG 59.416 44.000 20.15 0.00 37.03 2.67
314 315 5.485353 TCCAGAGTAACAGTGGAATCTGATT 59.515 40.000 20.15 1.81 37.43 2.57
315 316 5.026121 TCCAGAGTAACAGTGGAATCTGAT 58.974 41.667 20.15 0.00 37.43 2.90
316 317 4.416516 TCCAGAGTAACAGTGGAATCTGA 58.583 43.478 20.15 8.57 37.43 3.27
317 318 4.808414 TCCAGAGTAACAGTGGAATCTG 57.192 45.455 14.46 14.46 37.43 2.90
321 322 4.262894 GGATGTTCCAGAGTAACAGTGGAA 60.263 45.833 5.05 5.05 46.01 3.53
322 323 3.260884 GGATGTTCCAGAGTAACAGTGGA 59.739 47.826 0.00 0.00 40.00 4.02
323 324 3.261897 AGGATGTTCCAGAGTAACAGTGG 59.738 47.826 0.00 0.00 40.00 4.00
324 325 4.221703 AGAGGATGTTCCAGAGTAACAGTG 59.778 45.833 0.00 0.00 40.00 3.66
325 326 4.421131 AGAGGATGTTCCAGAGTAACAGT 58.579 43.478 0.00 0.00 40.00 3.55
326 327 5.413309 AAGAGGATGTTCCAGAGTAACAG 57.587 43.478 0.00 0.00 40.00 3.16
327 328 5.306937 TGAAAGAGGATGTTCCAGAGTAACA 59.693 40.000 0.00 0.00 39.61 2.41
328 329 5.794894 TGAAAGAGGATGTTCCAGAGTAAC 58.205 41.667 0.00 0.00 39.61 2.50
329 330 6.433847 TTGAAAGAGGATGTTCCAGAGTAA 57.566 37.500 0.00 0.00 39.61 2.24
330 331 6.270000 TCTTTGAAAGAGGATGTTCCAGAGTA 59.730 38.462 3.02 0.00 39.61 2.59
331 332 4.982241 TTGAAAGAGGATGTTCCAGAGT 57.018 40.909 0.00 0.00 39.61 3.24
332 333 5.555017 TCTTTGAAAGAGGATGTTCCAGAG 58.445 41.667 3.02 0.00 39.61 3.35
333 334 5.567037 TCTTTGAAAGAGGATGTTCCAGA 57.433 39.130 3.02 0.00 39.61 3.86
345 346 4.999950 GGTCTGAAGATGCTCTTTGAAAGA 59.000 41.667 7.49 7.49 36.73 2.52
346 347 4.155644 GGGTCTGAAGATGCTCTTTGAAAG 59.844 45.833 0.00 0.00 36.73 2.62
347 348 4.074970 GGGTCTGAAGATGCTCTTTGAAA 58.925 43.478 0.86 0.00 36.73 2.69
348 349 3.560025 GGGGTCTGAAGATGCTCTTTGAA 60.560 47.826 0.86 0.00 36.73 2.69
349 350 2.026822 GGGGTCTGAAGATGCTCTTTGA 60.027 50.000 0.86 1.26 36.73 2.69
350 351 2.363683 GGGGTCTGAAGATGCTCTTTG 58.636 52.381 0.86 0.00 36.73 2.77
351 352 1.065854 CGGGGTCTGAAGATGCTCTTT 60.066 52.381 0.86 0.00 36.73 2.52
352 353 0.539051 CGGGGTCTGAAGATGCTCTT 59.461 55.000 0.00 0.00 39.87 2.85
353 354 0.616111 ACGGGGTCTGAAGATGCTCT 60.616 55.000 0.00 0.00 0.00 4.09
354 355 0.250513 AACGGGGTCTGAAGATGCTC 59.749 55.000 0.00 0.00 0.00 4.26
355 356 0.693049 AAACGGGGTCTGAAGATGCT 59.307 50.000 0.00 0.00 0.00 3.79
356 357 1.534729 AAAACGGGGTCTGAAGATGC 58.465 50.000 0.00 0.00 0.00 3.91
357 358 3.684788 CAGTAAAACGGGGTCTGAAGATG 59.315 47.826 0.00 0.00 0.00 2.90
358 359 3.868754 GCAGTAAAACGGGGTCTGAAGAT 60.869 47.826 0.00 0.00 0.00 2.40
359 360 2.549349 GCAGTAAAACGGGGTCTGAAGA 60.549 50.000 0.00 0.00 0.00 2.87
360 361 1.804748 GCAGTAAAACGGGGTCTGAAG 59.195 52.381 0.00 0.00 0.00 3.02
361 362 1.141254 TGCAGTAAAACGGGGTCTGAA 59.859 47.619 0.00 0.00 0.00 3.02
362 363 0.759959 TGCAGTAAAACGGGGTCTGA 59.240 50.000 0.00 0.00 0.00 3.27
363 364 1.535462 CTTGCAGTAAAACGGGGTCTG 59.465 52.381 0.00 0.00 0.00 3.51
364 365 1.892209 CTTGCAGTAAAACGGGGTCT 58.108 50.000 0.00 0.00 0.00 3.85
365 366 0.240145 GCTTGCAGTAAAACGGGGTC 59.760 55.000 0.00 0.00 0.00 4.46
366 367 1.512156 CGCTTGCAGTAAAACGGGGT 61.512 55.000 0.00 0.00 0.00 4.95
367 368 1.209127 CGCTTGCAGTAAAACGGGG 59.791 57.895 0.00 0.00 0.00 5.73
368 369 1.442017 GCGCTTGCAGTAAAACGGG 60.442 57.895 0.00 0.00 38.92 5.28
369 370 1.442017 GGCGCTTGCAGTAAAACGG 60.442 57.895 7.64 0.00 41.71 4.44
370 371 0.452784 GAGGCGCTTGCAGTAAAACG 60.453 55.000 7.64 0.00 41.71 3.60
371 372 0.875059 AGAGGCGCTTGCAGTAAAAC 59.125 50.000 7.64 0.00 41.71 2.43
372 373 0.874390 CAGAGGCGCTTGCAGTAAAA 59.126 50.000 7.64 0.00 41.71 1.52
373 374 1.577328 GCAGAGGCGCTTGCAGTAAA 61.577 55.000 21.21 0.00 41.71 2.01
374 375 2.034879 GCAGAGGCGCTTGCAGTAA 61.035 57.895 21.21 0.00 41.71 2.24
375 376 2.434884 GCAGAGGCGCTTGCAGTA 60.435 61.111 21.21 0.00 41.71 2.74
385 386 4.261801 TGTTTGAGGTTAATAGCAGAGGC 58.738 43.478 0.00 0.00 41.61 4.70
386 387 5.582665 GTCTGTTTGAGGTTAATAGCAGAGG 59.417 44.000 0.00 0.00 33.22 3.69
387 388 5.289675 CGTCTGTTTGAGGTTAATAGCAGAG 59.710 44.000 0.00 0.00 33.22 3.35
388 389 5.168569 CGTCTGTTTGAGGTTAATAGCAGA 58.831 41.667 0.00 0.00 0.00 4.26
389 390 4.201724 GCGTCTGTTTGAGGTTAATAGCAG 60.202 45.833 0.00 0.00 33.47 4.24
390 391 3.682858 GCGTCTGTTTGAGGTTAATAGCA 59.317 43.478 0.00 0.00 33.47 3.49
391 392 3.241995 CGCGTCTGTTTGAGGTTAATAGC 60.242 47.826 0.00 0.00 33.47 2.97
392 393 3.306166 CCGCGTCTGTTTGAGGTTAATAG 59.694 47.826 4.92 0.00 33.47 1.73
393 394 3.255725 CCGCGTCTGTTTGAGGTTAATA 58.744 45.455 4.92 0.00 33.47 0.98
394 395 2.073816 CCGCGTCTGTTTGAGGTTAAT 58.926 47.619 4.92 0.00 33.47 1.40
426 427 1.301401 TTTGCCACGAGAAGGTCCG 60.301 57.895 0.00 0.00 0.00 4.79
428 429 1.002792 GTTGTTTGCCACGAGAAGGTC 60.003 52.381 0.00 0.00 0.00 3.85
607 610 1.823169 TTGGGAGTAGACGTGTGGGC 61.823 60.000 0.00 0.00 0.00 5.36
1052 1055 4.253685 CTCGTCCATCTCTCTATCTCTCC 58.746 52.174 0.00 0.00 0.00 3.71
1623 1626 0.383246 GATCCTCGTCATCGTCGTCG 60.383 60.000 0.00 0.00 38.33 5.12
1902 1905 2.320781 TCGATCTCCTCTCCCAAATCC 58.679 52.381 0.00 0.00 0.00 3.01
1953 1956 1.445582 GGGCACGTCAAGTACCTCG 60.446 63.158 0.00 0.00 36.49 4.63
2039 2048 0.177604 CTCAGCCTCCTCACCATCAC 59.822 60.000 0.00 0.00 0.00 3.06
2040 2049 1.620739 GCTCAGCCTCCTCACCATCA 61.621 60.000 0.00 0.00 0.00 3.07
2041 2050 1.145819 GCTCAGCCTCCTCACCATC 59.854 63.158 0.00 0.00 0.00 3.51
2163 2172 2.171840 CTTTCCTCGTCTTCCTCTCCA 58.828 52.381 0.00 0.00 0.00 3.86
2248 2257 3.191371 ACTTCAAAGGCTAGCGGAAATTG 59.809 43.478 9.00 9.07 0.00 2.32
2250 2259 2.749621 CACTTCAAAGGCTAGCGGAAAT 59.250 45.455 9.00 0.00 0.00 2.17
2251 2260 2.151202 CACTTCAAAGGCTAGCGGAAA 58.849 47.619 9.00 0.00 0.00 3.13
2252 2261 1.808411 CACTTCAAAGGCTAGCGGAA 58.192 50.000 9.00 8.83 0.00 4.30
2311 2323 9.529325 TCCTAAACAATATGACTAGAACAATCG 57.471 33.333 0.00 0.00 0.00 3.34
2336 2348 6.890293 AGAAGGGTGGTCAATAGTTATCTTC 58.110 40.000 0.00 0.00 0.00 2.87
2495 2510 3.586174 AGTGGGGATCTGACATATGATGG 59.414 47.826 10.38 0.00 33.60 3.51
2497 2512 3.513119 CGAGTGGGGATCTGACATATGAT 59.487 47.826 10.38 0.00 0.00 2.45
2522 2537 4.573607 ACCTACCACAAAAAGAAACGAGAC 59.426 41.667 0.00 0.00 0.00 3.36
2526 2541 5.297527 ACCTAACCTACCACAAAAAGAAACG 59.702 40.000 0.00 0.00 0.00 3.60
2623 2638 4.333690 AGCAATATCTTGGGAGCATGATC 58.666 43.478 1.26 1.26 32.72 2.92
2694 2709 3.126001 TGACACACTCCTGGTCATTTC 57.874 47.619 0.00 0.00 36.69 2.17
2731 2746 3.263425 TCCCCAAGCTTCTAACTACAAGG 59.737 47.826 0.00 0.00 0.00 3.61
2773 2790 7.496346 ACATGAGGAACTAATCTACTTCCAA 57.504 36.000 0.00 0.00 41.55 3.53
2902 2928 5.754782 AGGGAACAACATGCATAACTGATA 58.245 37.500 0.00 0.00 0.00 2.15
2911 2937 3.088532 GGAACATAGGGAACAACATGCA 58.911 45.455 0.00 0.00 0.00 3.96
2959 2985 7.665690 AGAACTAAGCCAGATATGATGTACAG 58.334 38.462 0.33 0.00 0.00 2.74
3039 3065 4.761739 CCTAAAACATGCATCGGGTCATAT 59.238 41.667 0.00 0.00 0.00 1.78
3043 3069 2.639065 TCCTAAAACATGCATCGGGTC 58.361 47.619 0.00 0.00 0.00 4.46
3047 3073 4.576053 TCCATCTTCCTAAAACATGCATCG 59.424 41.667 0.00 0.00 0.00 3.84
3062 3088 7.230027 ACAAATATGAGGAGGATTCCATCTTC 58.770 38.462 5.29 6.43 46.64 2.87
3073 3099 7.921786 TGTACAAGAAACAAATATGAGGAGG 57.078 36.000 0.00 0.00 0.00 4.30
3103 3129 5.890424 TTACCGAAGCTATTTTTCAAGGG 57.110 39.130 0.00 0.00 0.00 3.95
3113 3139 1.768870 AGTGGCCATTACCGAAGCTAT 59.231 47.619 9.72 0.00 0.00 2.97
3136 3162 7.706179 CAGAAAATATGCCACCGAATAAACAAT 59.294 33.333 0.00 0.00 0.00 2.71
3140 3174 6.375736 TGACAGAAAATATGCCACCGAATAAA 59.624 34.615 0.00 0.00 0.00 1.40
3141 3175 5.883115 TGACAGAAAATATGCCACCGAATAA 59.117 36.000 0.00 0.00 0.00 1.40
3142 3176 5.432645 TGACAGAAAATATGCCACCGAATA 58.567 37.500 0.00 0.00 0.00 1.75
3143 3177 4.269183 TGACAGAAAATATGCCACCGAAT 58.731 39.130 0.00 0.00 0.00 3.34
3144 3178 3.680490 TGACAGAAAATATGCCACCGAA 58.320 40.909 0.00 0.00 0.00 4.30
3145 3179 3.342377 TGACAGAAAATATGCCACCGA 57.658 42.857 0.00 0.00 0.00 4.69
3146 3180 4.637483 AATGACAGAAAATATGCCACCG 57.363 40.909 0.00 0.00 0.00 4.94
3147 3181 8.947055 AATAAAATGACAGAAAATATGCCACC 57.053 30.769 0.00 0.00 0.00 4.61
3294 3329 7.987750 TGGTAACTAAATCAACAGCATAACA 57.012 32.000 0.00 0.00 37.61 2.41
3459 3494 0.038744 CCTGGACTTCCAACAGCCAT 59.961 55.000 0.00 0.00 46.97 4.40
3491 3526 1.592669 GACATCATCCGGGTCAGCG 60.593 63.158 0.00 0.00 0.00 5.18
3500 3535 4.037327 TCTCTGTCTTCATCGACATCATCC 59.963 45.833 0.00 0.00 42.51 3.51
3524 3559 2.033424 GTCGTCATCATCATCGACCTCA 59.967 50.000 5.44 0.00 44.18 3.86
3556 3591 2.600769 AGGACGACGGCTGGTCTT 60.601 61.111 0.00 0.00 43.79 3.01
3647 3682 4.243008 TGCTTGAACGGCCGGTCA 62.243 61.111 40.92 40.92 40.47 4.02
3726 3767 1.820056 CTGATGCTGCTGCTCCTGG 60.820 63.158 17.00 0.00 40.48 4.45
3741 3782 2.694628 ACCATTTCTGTTTTGCTGCTGA 59.305 40.909 0.00 0.00 0.00 4.26
3956 4000 1.553690 CGAAGGAAGGAGGGAAGCCA 61.554 60.000 0.00 0.00 0.00 4.75
3959 4003 3.636153 ATTTCGAAGGAAGGAGGGAAG 57.364 47.619 0.00 0.00 32.80 3.46
3974 4018 1.994779 GGCAATGCAACAGGAATTTCG 59.005 47.619 7.79 0.00 0.00 3.46
4086 4142 3.573967 CAGTTCAACCAGGGCAAAGTATT 59.426 43.478 0.00 0.00 0.00 1.89
4341 4405 4.699522 GCTCGGGCCTCGTTGGTT 62.700 66.667 0.84 0.00 40.32 3.67
4412 4476 2.806244 ACTCTCAACGAAAAATCACGGG 59.194 45.455 0.00 0.00 0.00 5.28
4669 4744 1.728490 GCATCCACCCAAATCCGCTC 61.728 60.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.