Multiple sequence alignment - TraesCS2D01G179000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G179000 chr2D 100.000 2612 0 0 1 2612 122559878 122562489 0.000000e+00 4824.0
1 TraesCS2D01G179000 chr2D 86.207 348 38 10 182 524 575827463 575827805 4.110000e-98 368.0
2 TraesCS2D01G179000 chr2D 97.872 188 3 1 1 188 252404559 252404745 9.020000e-85 324.0
3 TraesCS2D01G179000 chr2D 77.778 135 29 1 2427 2561 3743332 3743199 5.990000e-12 82.4
4 TraesCS2D01G179000 chr2A 96.608 737 21 1 958 1694 126656571 126657303 0.000000e+00 1219.0
5 TraesCS2D01G179000 chr2A 92.473 465 31 3 1857 2321 43300919 43301379 0.000000e+00 662.0
6 TraesCS2D01G179000 chr2A 90.616 341 17 6 634 961 126651265 126651603 3.090000e-119 438.0
7 TraesCS2D01G179000 chr2A 89.037 301 22 4 2322 2612 126657543 126657842 1.910000e-96 363.0
8 TraesCS2D01G179000 chr2A 94.161 137 8 0 1679 1815 126657395 126657531 2.630000e-50 209.0
9 TraesCS2D01G179000 chr2A 100.000 28 0 0 1826 1853 126657525 126657552 5.000000e-03 52.8
10 TraesCS2D01G179000 chr2B 95.207 605 19 7 905 1503 175454600 175455200 0.000000e+00 948.0
11 TraesCS2D01G179000 chr2B 96.497 314 4 4 609 921 175453387 175453694 1.790000e-141 512.0
12 TraesCS2D01G179000 chr2B 87.164 335 41 2 182 515 787077832 787078165 1.900000e-101 379.0
13 TraesCS2D01G179000 chr1D 92.751 469 29 4 1854 2322 419232468 419232005 0.000000e+00 673.0
14 TraesCS2D01G179000 chr1D 86.006 343 47 1 182 524 479536453 479536112 1.480000e-97 366.0
15 TraesCS2D01G179000 chr1D 97.895 190 4 0 1 190 49356346 49356535 1.940000e-86 329.0
16 TraesCS2D01G179000 chr1D 97.368 190 5 0 1 190 296635951 296635762 9.020000e-85 324.0
17 TraesCS2D01G179000 chr1D 77.686 121 25 2 2373 2492 451048065 451048184 3.610000e-09 73.1
18 TraesCS2D01G179000 chr6D 92.719 467 30 3 1855 2321 20299078 20298616 0.000000e+00 671.0
19 TraesCS2D01G179000 chr6D 97.861 187 4 0 1 187 218295440 218295626 9.020000e-85 324.0
20 TraesCS2D01G179000 chr6D 97.382 191 4 1 1 191 373492190 373492001 9.020000e-85 324.0
21 TraesCS2D01G179000 chr3D 92.308 468 32 2 1854 2321 85258259 85257796 0.000000e+00 662.0
22 TraesCS2D01G179000 chr3D 91.561 474 28 7 1854 2322 609283378 609282912 0.000000e+00 643.0
23 TraesCS2D01G179000 chr3D 87.937 315 38 0 182 496 427151416 427151102 3.170000e-99 372.0
24 TraesCS2D01G179000 chr5D 91.083 471 34 6 1854 2321 546348605 546349070 4.740000e-177 630.0
25 TraesCS2D01G179000 chr5D 97.861 187 4 0 1 187 280081729 280081543 9.020000e-85 324.0
26 TraesCS2D01G179000 chr5B 91.045 469 36 4 1853 2321 374439883 374440345 1.710000e-176 628.0
27 TraesCS2D01G179000 chr5B 90.618 469 40 3 1854 2321 430457425 430457890 1.030000e-173 619.0
28 TraesCS2D01G179000 chr5B 85.171 526 71 5 1 523 581173181 581172660 1.380000e-147 532.0
29 TraesCS2D01G179000 chr3A 90.466 472 35 8 1854 2321 12554944 12555409 4.780000e-172 614.0
30 TraesCS2D01G179000 chr3A 98.913 184 2 0 1 184 583876814 583876631 1.940000e-86 329.0
31 TraesCS2D01G179000 chr3B 86.919 344 42 3 182 524 779463540 779463199 1.470000e-102 383.0
32 TraesCS2D01G179000 chr3B 86.087 345 44 4 182 524 244977651 244977993 4.110000e-98 368.0
33 TraesCS2D01G179000 chr3B 85.965 342 46 2 182 522 825013921 825013581 5.310000e-97 364.0
34 TraesCS2D01G179000 chr3B 81.707 164 29 1 2395 2558 496317914 496318076 4.530000e-28 135.0
35 TraesCS2D01G179000 chr1B 85.507 345 46 4 182 524 433645393 433645735 8.890000e-95 357.0
36 TraesCS2D01G179000 chr4D 96.875 192 6 0 1 192 467862735 467862926 3.240000e-84 322.0
37 TraesCS2D01G179000 chr4D 80.543 221 38 4 2393 2611 304358873 304358656 5.780000e-37 165.0
38 TraesCS2D01G179000 chr7A 81.448 221 34 7 2395 2612 686010876 686011092 9.610000e-40 174.0
39 TraesCS2D01G179000 chr5A 78.448 232 47 3 2382 2612 405808151 405808380 5.820000e-32 148.0
40 TraesCS2D01G179000 chr5A 84.507 142 20 2 2472 2612 632275283 632275423 3.510000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G179000 chr2D 122559878 122562489 2611 False 4824.00 4824 100.0000 1 2612 1 chr2D.!!$F1 2611
1 TraesCS2D01G179000 chr2A 126656571 126657842 1271 False 460.95 1219 94.9515 958 2612 4 chr2A.!!$F3 1654
2 TraesCS2D01G179000 chr2B 175453387 175455200 1813 False 730.00 948 95.8520 609 1503 2 chr2B.!!$F2 894
3 TraesCS2D01G179000 chr5B 581172660 581173181 521 True 532.00 532 85.1710 1 523 1 chr5B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 303 0.108585 ACACACGGTCCAGCATCTTT 59.891 50.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 3317 0.106015 GCACCCAGGCCCATCTATTT 60.106 55.0 0.0 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.325421 ACTCATATCATCAAGATCAATCAAGC 57.675 34.615 0.00 0.00 38.19 4.01
48 49 7.390718 TCATATCATCAAGATCAATCAAGCAGG 59.609 37.037 0.00 0.00 38.19 4.85
69 70 5.246429 CAGGAAGTAGGGTATTACCTCCATC 59.754 48.000 16.39 8.41 42.09 3.51
96 97 2.209690 CCCGAACCTGGGTAAACATT 57.790 50.000 0.00 0.00 44.76 2.71
110 111 2.035626 CATTGTGTCCCCCGCCTT 59.964 61.111 0.00 0.00 0.00 4.35
121 122 0.463833 CCCCGCCTTCTGTTACCATC 60.464 60.000 0.00 0.00 0.00 3.51
122 123 0.463833 CCCGCCTTCTGTTACCATCC 60.464 60.000 0.00 0.00 0.00 3.51
129 130 3.370103 CCTTCTGTTACCATCCGCCTTAA 60.370 47.826 0.00 0.00 0.00 1.85
140 141 0.110373 CCGCCTTAAACGCACAGTTC 60.110 55.000 0.00 0.00 43.37 3.01
145 146 1.193874 CTTAAACGCACAGTTCGGGAC 59.806 52.381 0.00 0.00 43.37 4.46
152 153 0.981277 CACAGTTCGGGACCCCCTAT 60.981 60.000 4.46 0.00 42.67 2.57
155 156 2.123164 TTCGGGACCCCCTATCCG 60.123 66.667 4.46 0.00 42.67 4.18
189 192 2.203098 ACACCGACAAACACCCCG 60.203 61.111 0.00 0.00 0.00 5.73
190 193 2.109387 CACCGACAAACACCCCGA 59.891 61.111 0.00 0.00 0.00 5.14
197 200 2.903350 AAACACCCCGAACACGCC 60.903 61.111 0.00 0.00 0.00 5.68
210 213 1.811266 CACGCCATCGAACTCCAGG 60.811 63.158 0.00 0.00 39.41 4.45
226 229 3.495729 GGTCTGACACCCCCACAT 58.504 61.111 10.38 0.00 39.69 3.21
227 230 1.002134 GGTCTGACACCCCCACATG 60.002 63.158 10.38 0.00 39.69 3.21
235 238 1.628846 ACACCCCCACATGACTAAGAC 59.371 52.381 0.00 0.00 0.00 3.01
236 239 1.628340 CACCCCCACATGACTAAGACA 59.372 52.381 0.00 0.00 0.00 3.41
238 241 3.454447 CACCCCCACATGACTAAGACATA 59.546 47.826 0.00 0.00 0.00 2.29
240 243 3.071602 CCCCCACATGACTAAGACATAGG 59.928 52.174 0.00 0.00 35.81 2.57
243 246 5.453903 CCCCACATGACTAAGACATAGGAAG 60.454 48.000 0.00 0.00 35.81 3.46
268 271 1.271840 ACCATACCTGCCATCCACGT 61.272 55.000 0.00 0.00 0.00 4.49
281 284 1.069427 CCACGTACCACGAACCCAA 59.931 57.895 5.61 0.00 46.05 4.12
286 289 0.939419 GTACCACGAACCCAACACAC 59.061 55.000 0.00 0.00 0.00 3.82
288 291 2.539338 CCACGAACCCAACACACGG 61.539 63.158 0.00 0.00 0.00 4.94
291 294 2.248835 CGAACCCAACACACGGTCC 61.249 63.158 0.00 0.00 0.00 4.46
292 295 1.153127 GAACCCAACACACGGTCCA 60.153 57.895 0.00 0.00 0.00 4.02
293 296 1.153046 AACCCAACACACGGTCCAG 60.153 57.895 0.00 0.00 0.00 3.86
294 297 2.978010 CCCAACACACGGTCCAGC 60.978 66.667 0.00 0.00 0.00 4.85
295 298 2.203139 CCAACACACGGTCCAGCA 60.203 61.111 0.00 0.00 0.00 4.41
300 303 0.108585 ACACACGGTCCAGCATCTTT 59.891 50.000 0.00 0.00 0.00 2.52
320 323 3.643978 GATGCCGCCGATGCAGAC 61.644 66.667 0.00 0.00 42.92 3.51
336 339 2.708051 CAGACCACAATCTGCATCTGT 58.292 47.619 2.24 0.00 39.77 3.41
358 361 1.280457 CTGGACTACCTCCCAAGCTT 58.720 55.000 0.00 0.00 38.49 3.74
363 366 2.227089 CTACCTCCCAAGCTTCGCGT 62.227 60.000 5.77 0.00 0.00 6.01
366 369 4.735132 TCCCAAGCTTCGCGTCGG 62.735 66.667 5.77 0.00 0.00 4.79
436 439 4.552365 CGAGGATGCCGCCACCAT 62.552 66.667 5.87 0.00 0.00 3.55
438 441 4.552365 AGGATGCCGCCACCATCG 62.552 66.667 5.87 0.00 39.92 3.84
439 442 4.545706 GGATGCCGCCACCATCGA 62.546 66.667 0.00 0.00 39.92 3.59
440 443 2.513666 GATGCCGCCACCATCGAA 60.514 61.111 0.00 0.00 30.88 3.71
442 445 3.329542 ATGCCGCCACCATCGAACT 62.330 57.895 0.00 0.00 0.00 3.01
456 459 4.034510 CCATCGAACTATCCTTGCTTGAAC 59.965 45.833 0.00 0.00 0.00 3.18
458 461 4.637276 TCGAACTATCCTTGCTTGAACAA 58.363 39.130 0.00 0.00 0.00 2.83
460 463 5.049680 TCGAACTATCCTTGCTTGAACAAAC 60.050 40.000 0.00 0.00 0.00 2.93
462 465 6.147164 CGAACTATCCTTGCTTGAACAAACTA 59.853 38.462 0.00 0.00 0.00 2.24
464 467 6.769512 ACTATCCTTGCTTGAACAAACTAGA 58.230 36.000 0.00 0.00 0.00 2.43
473 476 7.725251 TGCTTGAACAAACTAGATTCCAAATT 58.275 30.769 0.00 0.00 0.00 1.82
496 499 1.420430 TCCCAACCATAGGACCGATC 58.580 55.000 0.00 0.00 0.00 3.69
501 504 1.179814 ACCATAGGACCGATCGCCTC 61.180 60.000 16.35 9.57 35.73 4.70
507 510 1.153901 GACCGATCGCCTCGTCAAA 60.154 57.895 10.32 0.00 46.18 2.69
509 512 1.153823 CCGATCGCCTCGTCAAAGT 60.154 57.895 10.32 0.00 46.18 2.66
515 518 2.646930 TCGCCTCGTCAAAGTAGGATA 58.353 47.619 0.00 0.00 31.64 2.59
516 519 2.617308 TCGCCTCGTCAAAGTAGGATAG 59.383 50.000 0.00 0.00 31.64 2.08
523 526 6.127423 CCTCGTCAAAGTAGGATAGGAAGAAA 60.127 42.308 0.00 0.00 31.64 2.52
524 527 7.418025 CCTCGTCAAAGTAGGATAGGAAGAAAT 60.418 40.741 0.00 0.00 31.64 2.17
525 528 7.848128 TCGTCAAAGTAGGATAGGAAGAAATT 58.152 34.615 0.00 0.00 0.00 1.82
526 529 7.764443 TCGTCAAAGTAGGATAGGAAGAAATTG 59.236 37.037 0.00 0.00 0.00 2.32
527 530 7.466050 CGTCAAAGTAGGATAGGAAGAAATTGC 60.466 40.741 0.00 0.00 0.00 3.56
528 531 6.538742 TCAAAGTAGGATAGGAAGAAATTGCG 59.461 38.462 0.00 0.00 0.00 4.85
529 532 4.962155 AGTAGGATAGGAAGAAATTGCGG 58.038 43.478 0.00 0.00 0.00 5.69
530 533 4.654262 AGTAGGATAGGAAGAAATTGCGGA 59.346 41.667 0.00 0.00 0.00 5.54
531 534 4.503714 AGGATAGGAAGAAATTGCGGAA 57.496 40.909 0.00 0.00 0.00 4.30
532 535 4.455606 AGGATAGGAAGAAATTGCGGAAG 58.544 43.478 0.00 0.00 0.00 3.46
533 536 4.080299 AGGATAGGAAGAAATTGCGGAAGT 60.080 41.667 0.00 0.00 0.00 3.01
534 537 5.130477 AGGATAGGAAGAAATTGCGGAAGTA 59.870 40.000 0.00 0.00 0.00 2.24
535 538 5.467063 GGATAGGAAGAAATTGCGGAAGTAG 59.533 44.000 0.00 0.00 0.00 2.57
536 539 4.287766 AGGAAGAAATTGCGGAAGTAGT 57.712 40.909 0.00 0.00 0.00 2.73
537 540 5.416271 AGGAAGAAATTGCGGAAGTAGTA 57.584 39.130 0.00 0.00 0.00 1.82
538 541 5.990668 AGGAAGAAATTGCGGAAGTAGTAT 58.009 37.500 0.00 0.00 0.00 2.12
539 542 6.415573 AGGAAGAAATTGCGGAAGTAGTATT 58.584 36.000 0.00 0.00 0.00 1.89
540 543 7.562135 AGGAAGAAATTGCGGAAGTAGTATTA 58.438 34.615 0.00 0.00 0.00 0.98
541 544 8.211629 AGGAAGAAATTGCGGAAGTAGTATTAT 58.788 33.333 0.00 0.00 0.00 1.28
542 545 9.485206 GGAAGAAATTGCGGAAGTAGTATTATA 57.515 33.333 0.00 0.00 0.00 0.98
544 547 9.826574 AAGAAATTGCGGAAGTAGTATTATACA 57.173 29.630 5.11 0.00 0.00 2.29
545 548 9.477484 AGAAATTGCGGAAGTAGTATTATACAG 57.523 33.333 5.11 0.00 0.00 2.74
546 549 9.257651 GAAATTGCGGAAGTAGTATTATACAGT 57.742 33.333 5.11 0.00 0.00 3.55
548 551 9.909644 AATTGCGGAAGTAGTATTATACAGTAG 57.090 33.333 5.11 0.00 0.00 2.57
549 552 8.455903 TTGCGGAAGTAGTATTATACAGTAGT 57.544 34.615 5.11 0.00 0.00 2.73
550 553 9.559732 TTGCGGAAGTAGTATTATACAGTAGTA 57.440 33.333 5.11 0.00 34.10 1.82
551 554 9.730705 TGCGGAAGTAGTATTATACAGTAGTAT 57.269 33.333 5.11 0.00 43.23 2.12
605 608 8.899427 ATCATACAGACAGTCTTATCCAATTG 57.101 34.615 0.00 0.00 0.00 2.32
606 609 8.078060 TCATACAGACAGTCTTATCCAATTGA 57.922 34.615 7.12 0.00 0.00 2.57
607 610 8.539544 TCATACAGACAGTCTTATCCAATTGAA 58.460 33.333 7.12 0.00 0.00 2.69
745 749 9.990360 AAAAATATTACTCCATTGTTTTTCCGT 57.010 25.926 0.00 0.00 0.00 4.69
812 816 0.893727 GGTGGCCGGACAGTCAAATT 60.894 55.000 12.52 0.00 0.00 1.82
866 870 4.181578 GACTGGGAAGTACGTACGTAGTA 58.818 47.826 30.37 17.02 45.11 1.82
907 911 1.562575 GACACCGACGGTTCGCAAAT 61.563 55.000 19.02 0.00 44.43 2.32
908 912 0.319727 ACACCGACGGTTCGCAAATA 60.320 50.000 19.02 0.00 44.43 1.40
1029 1961 5.695851 AATCAAGCAGTTTCTTACCACTG 57.304 39.130 0.00 0.00 42.94 3.66
1142 2074 1.746615 CGGTCAGTGGAATGGCTGG 60.747 63.158 0.00 0.00 33.81 4.85
1255 2187 3.152937 CTACGCCTCCGTCGTCTCG 62.153 68.421 0.00 0.00 46.39 4.04
1456 2388 1.724582 GCTTTGCCCGGCATTACGAT 61.725 55.000 14.30 0.00 38.76 3.73
1464 2396 1.202533 CCGGCATTACGATCTCACCTT 60.203 52.381 0.00 0.00 35.47 3.50
1467 2399 3.126831 GGCATTACGATCTCACCTTCTG 58.873 50.000 0.00 0.00 0.00 3.02
1577 2509 2.600420 GTGACTGATCTATGCGTGTGTG 59.400 50.000 0.00 0.00 0.00 3.82
1588 2520 2.007549 CGTGTGTGCGTGGTTTGTA 58.992 52.632 0.00 0.00 0.00 2.41
1589 2521 0.315544 CGTGTGTGCGTGGTTTGTAC 60.316 55.000 0.00 0.00 0.00 2.90
1590 2522 0.315544 GTGTGTGCGTGGTTTGTACG 60.316 55.000 0.00 0.00 43.93 3.67
1591 2523 0.740164 TGTGTGCGTGGTTTGTACGT 60.740 50.000 0.00 0.00 43.09 3.57
1645 2577 3.003480 GCAGACTGTTCCATGTACTTCC 58.997 50.000 3.99 0.00 0.00 3.46
1674 2606 2.165167 CCACTGTCCATGAAACATGCT 58.835 47.619 0.00 0.00 0.00 3.79
1687 2619 2.370281 ACATGCTGAGAGTTGTACGG 57.630 50.000 0.00 0.00 0.00 4.02
1696 2735 2.731976 GAGAGTTGTACGGCTCTTTGTG 59.268 50.000 16.74 0.00 41.63 3.33
1808 2847 0.528033 TGGAACAACGTCGCGAGAAA 60.528 50.000 10.24 0.00 37.32 2.52
1809 2848 0.161024 GGAACAACGTCGCGAGAAAG 59.839 55.000 10.24 3.92 45.01 2.62
1810 2849 0.449022 GAACAACGTCGCGAGAAAGC 60.449 55.000 10.24 0.00 45.01 3.51
1818 2857 4.245054 GCGAGAAAGCGTCTGACA 57.755 55.556 8.73 0.00 36.41 3.58
1819 2858 2.743195 GCGAGAAAGCGTCTGACAT 58.257 52.632 8.73 0.00 36.41 3.06
1820 2859 1.909376 GCGAGAAAGCGTCTGACATA 58.091 50.000 8.73 0.00 36.41 2.29
1821 2860 2.464865 GCGAGAAAGCGTCTGACATAT 58.535 47.619 8.73 0.00 36.41 1.78
1822 2861 3.629058 GCGAGAAAGCGTCTGACATATA 58.371 45.455 8.73 0.00 36.41 0.86
1823 2862 3.666334 GCGAGAAAGCGTCTGACATATAG 59.334 47.826 8.73 0.00 36.41 1.31
1824 2863 4.222886 CGAGAAAGCGTCTGACATATAGG 58.777 47.826 8.73 0.00 36.41 2.57
1862 2901 5.039480 GATGTGAGGCATCGGAAAATATG 57.961 43.478 0.00 0.00 43.75 1.78
1863 2902 3.884895 TGTGAGGCATCGGAAAATATGT 58.115 40.909 0.00 0.00 0.00 2.29
1864 2903 4.269183 TGTGAGGCATCGGAAAATATGTT 58.731 39.130 0.00 0.00 0.00 2.71
1865 2904 4.704540 TGTGAGGCATCGGAAAATATGTTT 59.295 37.500 0.00 0.00 0.00 2.83
1866 2905 5.184864 TGTGAGGCATCGGAAAATATGTTTT 59.815 36.000 0.00 0.00 40.13 2.43
1867 2906 6.375736 TGTGAGGCATCGGAAAATATGTTTTA 59.624 34.615 0.00 0.00 37.65 1.52
1868 2907 6.912591 GTGAGGCATCGGAAAATATGTTTTAG 59.087 38.462 0.00 0.00 37.65 1.85
1869 2908 6.826231 TGAGGCATCGGAAAATATGTTTTAGA 59.174 34.615 0.00 4.34 37.65 2.10
1870 2909 7.012327 TGAGGCATCGGAAAATATGTTTTAGAG 59.988 37.037 0.00 0.00 37.65 2.43
1871 2910 5.915196 GGCATCGGAAAATATGTTTTAGAGC 59.085 40.000 0.00 8.48 37.65 4.09
1872 2911 6.459573 GGCATCGGAAAATATGTTTTAGAGCA 60.460 38.462 0.00 0.00 37.65 4.26
1873 2912 6.414987 GCATCGGAAAATATGTTTTAGAGCAC 59.585 38.462 0.00 0.00 37.65 4.40
1874 2913 6.431198 TCGGAAAATATGTTTTAGAGCACC 57.569 37.500 0.00 0.00 37.65 5.01
1875 2914 6.177610 TCGGAAAATATGTTTTAGAGCACCT 58.822 36.000 0.00 0.00 37.65 4.00
1876 2915 6.093495 TCGGAAAATATGTTTTAGAGCACCTG 59.907 38.462 0.00 0.00 37.65 4.00
1877 2916 6.036470 GGAAAATATGTTTTAGAGCACCTGC 58.964 40.000 0.00 0.00 37.65 4.85
1878 2917 6.350110 GGAAAATATGTTTTAGAGCACCTGCA 60.350 38.462 0.00 0.00 39.46 4.41
1879 2918 5.567138 AATATGTTTTAGAGCACCTGCAC 57.433 39.130 0.00 0.00 45.16 4.57
1880 2919 1.604604 TGTTTTAGAGCACCTGCACC 58.395 50.000 0.00 0.00 45.16 5.01
1881 2920 1.142870 TGTTTTAGAGCACCTGCACCT 59.857 47.619 0.00 0.00 45.16 4.00
1882 2921 2.370519 TGTTTTAGAGCACCTGCACCTA 59.629 45.455 0.00 0.00 45.16 3.08
1883 2922 3.003480 GTTTTAGAGCACCTGCACCTAG 58.997 50.000 0.00 0.00 45.16 3.02
1884 2923 1.195115 TTAGAGCACCTGCACCTAGG 58.805 55.000 7.41 7.41 45.16 3.02
1885 2924 1.330655 TAGAGCACCTGCACCTAGGC 61.331 60.000 9.30 0.00 45.16 3.93
1886 2925 3.689002 GAGCACCTGCACCTAGGCC 62.689 68.421 9.30 0.00 45.16 5.19
1887 2926 4.803908 GCACCTGCACCTAGGCCC 62.804 72.222 9.30 0.00 41.75 5.80
1888 2927 3.329889 CACCTGCACCTAGGCCCA 61.330 66.667 9.30 5.17 41.75 5.36
1889 2928 2.286425 ACCTGCACCTAGGCCCAT 60.286 61.111 9.30 0.00 41.75 4.00
1890 2929 2.378634 ACCTGCACCTAGGCCCATC 61.379 63.158 9.30 0.00 41.75 3.51
1891 2930 2.074948 CCTGCACCTAGGCCCATCT 61.075 63.158 9.30 0.00 0.00 2.90
1892 2931 0.764369 CCTGCACCTAGGCCCATCTA 60.764 60.000 9.30 0.00 0.00 1.98
1893 2932 1.356124 CTGCACCTAGGCCCATCTAT 58.644 55.000 9.30 0.00 0.00 1.98
1894 2933 1.277557 CTGCACCTAGGCCCATCTATC 59.722 57.143 9.30 0.00 0.00 2.08
1895 2934 0.615850 GCACCTAGGCCCATCTATCC 59.384 60.000 9.30 0.00 0.00 2.59
1896 2935 1.833332 GCACCTAGGCCCATCTATCCT 60.833 57.143 9.30 0.00 0.00 3.24
1897 2936 2.559931 GCACCTAGGCCCATCTATCCTA 60.560 54.545 9.30 0.00 0.00 2.94
1898 2937 3.370104 CACCTAGGCCCATCTATCCTAG 58.630 54.545 9.30 7.40 45.62 3.02
1899 2938 2.292587 ACCTAGGCCCATCTATCCTAGC 60.293 54.545 9.30 0.00 45.02 3.42
1900 2939 2.393646 CTAGGCCCATCTATCCTAGCC 58.606 57.143 0.00 0.00 41.87 3.93
1901 2940 0.493639 AGGCCCATCTATCCTAGCCA 59.506 55.000 0.00 0.00 42.97 4.75
1902 2941 1.081853 AGGCCCATCTATCCTAGCCAT 59.918 52.381 0.00 0.00 42.97 4.40
1903 2942 1.488393 GGCCCATCTATCCTAGCCATC 59.512 57.143 0.00 0.00 40.20 3.51
1904 2943 1.488393 GCCCATCTATCCTAGCCATCC 59.512 57.143 0.00 0.00 0.00 3.51
1905 2944 2.837947 CCCATCTATCCTAGCCATCCA 58.162 52.381 0.00 0.00 0.00 3.41
1906 2945 3.391774 CCCATCTATCCTAGCCATCCAT 58.608 50.000 0.00 0.00 0.00 3.41
1907 2946 3.784763 CCCATCTATCCTAGCCATCCATT 59.215 47.826 0.00 0.00 0.00 3.16
1908 2947 4.229123 CCCATCTATCCTAGCCATCCATTT 59.771 45.833 0.00 0.00 0.00 2.32
1909 2948 5.281401 CCCATCTATCCTAGCCATCCATTTT 60.281 44.000 0.00 0.00 0.00 1.82
1910 2949 6.251471 CCATCTATCCTAGCCATCCATTTTT 58.749 40.000 0.00 0.00 0.00 1.94
1911 2950 6.376581 CCATCTATCCTAGCCATCCATTTTTC 59.623 42.308 0.00 0.00 0.00 2.29
1912 2951 5.551233 TCTATCCTAGCCATCCATTTTTCG 58.449 41.667 0.00 0.00 0.00 3.46
1913 2952 2.297701 TCCTAGCCATCCATTTTTCGC 58.702 47.619 0.00 0.00 0.00 4.70
1914 2953 2.023673 CCTAGCCATCCATTTTTCGCA 58.976 47.619 0.00 0.00 0.00 5.10
1915 2954 2.624838 CCTAGCCATCCATTTTTCGCAT 59.375 45.455 0.00 0.00 0.00 4.73
1916 2955 2.877043 AGCCATCCATTTTTCGCATC 57.123 45.000 0.00 0.00 0.00 3.91
1917 2956 1.066002 AGCCATCCATTTTTCGCATCG 59.934 47.619 0.00 0.00 0.00 3.84
1918 2957 1.202290 GCCATCCATTTTTCGCATCGT 60.202 47.619 0.00 0.00 0.00 3.73
1919 2958 2.453080 CCATCCATTTTTCGCATCGTG 58.547 47.619 0.00 0.00 0.00 4.35
1920 2959 2.097304 CCATCCATTTTTCGCATCGTGA 59.903 45.455 0.00 0.00 0.00 4.35
1921 2960 3.243168 CCATCCATTTTTCGCATCGTGAT 60.243 43.478 0.00 0.00 0.00 3.06
1922 2961 4.353737 CATCCATTTTTCGCATCGTGATT 58.646 39.130 0.00 0.00 0.00 2.57
1923 2962 4.433186 TCCATTTTTCGCATCGTGATTT 57.567 36.364 0.00 0.00 0.00 2.17
1924 2963 4.165036 TCCATTTTTCGCATCGTGATTTG 58.835 39.130 0.00 0.00 0.00 2.32
1925 2964 3.919804 CCATTTTTCGCATCGTGATTTGT 59.080 39.130 0.00 0.00 0.00 2.83
1926 2965 4.201513 CCATTTTTCGCATCGTGATTTGTG 60.202 41.667 0.00 0.00 0.00 3.33
1927 2966 1.962412 TTTCGCATCGTGATTTGTGC 58.038 45.000 0.00 0.00 0.00 4.57
1928 2967 0.871057 TTCGCATCGTGATTTGTGCA 59.129 45.000 0.00 0.00 37.44 4.57
1929 2968 0.871057 TCGCATCGTGATTTGTGCAA 59.129 45.000 0.00 0.00 37.44 4.08
1930 2969 1.136000 TCGCATCGTGATTTGTGCAAG 60.136 47.619 0.00 0.00 37.44 4.01
1931 2970 0.986992 GCATCGTGATTTGTGCAAGC 59.013 50.000 0.00 0.00 37.52 4.01
1932 2971 1.666599 GCATCGTGATTTGTGCAAGCA 60.667 47.619 0.00 0.00 37.52 3.91
1933 2972 1.980844 CATCGTGATTTGTGCAAGCAC 59.019 47.619 17.76 17.76 46.33 4.40
1946 2985 5.723492 GTGCAAGCACATTTCTTTCTTTT 57.277 34.783 19.47 0.00 45.53 2.27
1947 2986 6.110543 GTGCAAGCACATTTCTTTCTTTTT 57.889 33.333 19.47 0.00 45.53 1.94
1989 3028 9.750125 AGAACATATTTTGAACTTCAAACTTCC 57.250 29.630 15.19 3.76 45.03 3.46
1990 3029 9.528018 GAACATATTTTGAACTTCAAACTTCCA 57.472 29.630 15.19 2.85 45.03 3.53
1991 3030 8.871686 ACATATTTTGAACTTCAAACTTCCAC 57.128 30.769 15.19 0.00 45.03 4.02
1992 3031 8.474025 ACATATTTTGAACTTCAAACTTCCACA 58.526 29.630 15.19 1.56 45.03 4.17
1993 3032 8.971321 CATATTTTGAACTTCAAACTTCCACAG 58.029 33.333 15.19 0.00 45.03 3.66
1994 3033 4.370364 TTGAACTTCAAACTTCCACAGC 57.630 40.909 1.47 0.00 32.71 4.40
1995 3034 3.351740 TGAACTTCAAACTTCCACAGCA 58.648 40.909 0.00 0.00 0.00 4.41
1996 3035 3.378112 TGAACTTCAAACTTCCACAGCAG 59.622 43.478 0.00 0.00 0.00 4.24
1997 3036 3.281727 ACTTCAAACTTCCACAGCAGA 57.718 42.857 0.00 0.00 0.00 4.26
1998 3037 3.209410 ACTTCAAACTTCCACAGCAGAG 58.791 45.455 0.00 0.00 0.00 3.35
1999 3038 1.597742 TCAAACTTCCACAGCAGAGC 58.402 50.000 0.00 0.00 0.00 4.09
2000 3039 1.134128 TCAAACTTCCACAGCAGAGCA 60.134 47.619 0.00 0.00 0.00 4.26
2001 3040 1.677576 CAAACTTCCACAGCAGAGCAA 59.322 47.619 0.00 0.00 0.00 3.91
2002 3041 2.057137 AACTTCCACAGCAGAGCAAA 57.943 45.000 0.00 0.00 0.00 3.68
2003 3042 1.602311 ACTTCCACAGCAGAGCAAAG 58.398 50.000 0.00 0.00 0.00 2.77
2004 3043 0.240411 CTTCCACAGCAGAGCAAAGC 59.760 55.000 0.00 0.00 0.00 3.51
2005 3044 0.179009 TTCCACAGCAGAGCAAAGCT 60.179 50.000 0.00 0.00 43.88 3.74
2006 3045 0.179009 TCCACAGCAGAGCAAAGCTT 60.179 50.000 0.00 0.00 39.88 3.74
2007 3046 0.672342 CCACAGCAGAGCAAAGCTTT 59.328 50.000 5.69 5.69 39.88 3.51
2008 3047 1.335689 CCACAGCAGAGCAAAGCTTTC 60.336 52.381 9.23 4.68 39.88 2.62
2009 3048 1.607628 CACAGCAGAGCAAAGCTTTCT 59.392 47.619 9.23 9.64 39.88 2.52
2010 3049 2.810274 CACAGCAGAGCAAAGCTTTCTA 59.190 45.455 9.23 0.00 39.88 2.10
2011 3050 3.439476 CACAGCAGAGCAAAGCTTTCTAT 59.561 43.478 9.23 4.46 39.88 1.98
2012 3051 3.688673 ACAGCAGAGCAAAGCTTTCTATC 59.311 43.478 9.23 7.65 39.88 2.08
2013 3052 3.940221 CAGCAGAGCAAAGCTTTCTATCT 59.060 43.478 9.23 9.85 39.88 1.98
2014 3053 5.114780 CAGCAGAGCAAAGCTTTCTATCTA 58.885 41.667 9.23 0.00 39.88 1.98
2015 3054 5.234757 CAGCAGAGCAAAGCTTTCTATCTAG 59.765 44.000 9.23 8.65 39.88 2.43
2016 3055 5.128499 AGCAGAGCAAAGCTTTCTATCTAGA 59.872 40.000 9.23 0.00 39.88 2.43
2017 3056 5.814705 GCAGAGCAAAGCTTTCTATCTAGAA 59.185 40.000 9.23 0.00 39.88 2.10
2018 3057 6.482973 GCAGAGCAAAGCTTTCTATCTAGAAT 59.517 38.462 9.23 0.00 41.52 2.40
2019 3058 7.307337 GCAGAGCAAAGCTTTCTATCTAGAATC 60.307 40.741 9.23 0.00 41.52 2.52
2020 3059 7.927629 CAGAGCAAAGCTTTCTATCTAGAATCT 59.072 37.037 9.23 1.46 41.52 2.40
2021 3060 7.927629 AGAGCAAAGCTTTCTATCTAGAATCTG 59.072 37.037 9.23 0.00 41.52 2.90
2022 3061 6.991531 AGCAAAGCTTTCTATCTAGAATCTGG 59.008 38.462 9.23 0.00 41.52 3.86
2023 3062 6.204495 GCAAAGCTTTCTATCTAGAATCTGGG 59.796 42.308 9.23 0.00 41.52 4.45
2024 3063 7.504403 CAAAGCTTTCTATCTAGAATCTGGGA 58.496 38.462 9.23 0.00 41.52 4.37
2025 3064 7.870426 AAGCTTTCTATCTAGAATCTGGGAT 57.130 36.000 0.00 0.00 41.52 3.85
2026 3065 8.964533 AAGCTTTCTATCTAGAATCTGGGATA 57.035 34.615 0.00 0.85 41.52 2.59
2027 3066 8.964533 AGCTTTCTATCTAGAATCTGGGATAA 57.035 34.615 0.00 0.00 41.52 1.75
2028 3067 9.386122 AGCTTTCTATCTAGAATCTGGGATAAA 57.614 33.333 0.00 0.00 41.52 1.40
2036 3075 9.844257 ATCTAGAATCTGGGATAAAACTTTCAG 57.156 33.333 0.00 0.00 0.00 3.02
2037 3076 9.046846 TCTAGAATCTGGGATAAAACTTTCAGA 57.953 33.333 0.00 0.00 36.00 3.27
2038 3077 9.844257 CTAGAATCTGGGATAAAACTTTCAGAT 57.156 33.333 0.00 0.00 41.83 2.90
2040 3079 9.539194 AGAATCTGGGATAAAACTTTCAGATTT 57.461 29.630 14.78 5.71 45.87 2.17
2149 3188 8.882415 TGAAAGTTTTATCTCACGTTCTAGTT 57.118 30.769 0.00 0.00 33.89 2.24
2150 3189 9.970395 TGAAAGTTTTATCTCACGTTCTAGTTA 57.030 29.630 0.00 0.00 33.89 2.24
2152 3191 8.983307 AAGTTTTATCTCACGTTCTAGTTAGG 57.017 34.615 0.00 0.00 0.00 2.69
2153 3192 8.345724 AGTTTTATCTCACGTTCTAGTTAGGA 57.654 34.615 0.00 0.00 0.00 2.94
2154 3193 8.800332 AGTTTTATCTCACGTTCTAGTTAGGAA 58.200 33.333 0.00 0.00 0.00 3.36
2155 3194 9.415544 GTTTTATCTCACGTTCTAGTTAGGAAA 57.584 33.333 0.00 0.00 0.00 3.13
2156 3195 8.976986 TTTATCTCACGTTCTAGTTAGGAAAC 57.023 34.615 0.00 0.00 35.72 2.78
2158 3197 6.645790 TCTCACGTTCTAGTTAGGAAACTT 57.354 37.500 0.00 0.00 43.60 2.66
2159 3198 7.047460 TCTCACGTTCTAGTTAGGAAACTTT 57.953 36.000 0.00 0.00 43.60 2.66
2160 3199 8.169977 TCTCACGTTCTAGTTAGGAAACTTTA 57.830 34.615 0.00 0.00 43.60 1.85
2161 3200 8.800332 TCTCACGTTCTAGTTAGGAAACTTTAT 58.200 33.333 0.00 0.00 43.60 1.40
2162 3201 9.420551 CTCACGTTCTAGTTAGGAAACTTTATT 57.579 33.333 0.00 0.00 43.60 1.40
2163 3202 9.199982 TCACGTTCTAGTTAGGAAACTTTATTG 57.800 33.333 0.00 0.00 43.60 1.90
2164 3203 8.985805 CACGTTCTAGTTAGGAAACTTTATTGT 58.014 33.333 0.00 0.00 43.60 2.71
2165 3204 8.985805 ACGTTCTAGTTAGGAAACTTTATTGTG 58.014 33.333 0.00 0.00 43.60 3.33
2166 3205 7.955864 CGTTCTAGTTAGGAAACTTTATTGTGC 59.044 37.037 0.00 0.00 43.60 4.57
2167 3206 9.000486 GTTCTAGTTAGGAAACTTTATTGTGCT 58.000 33.333 0.00 0.00 43.60 4.40
2168 3207 8.547967 TCTAGTTAGGAAACTTTATTGTGCTG 57.452 34.615 0.00 0.00 43.60 4.41
2169 3208 6.013842 AGTTAGGAAACTTTATTGTGCTGC 57.986 37.500 0.00 0.00 43.60 5.25
2170 3209 5.534654 AGTTAGGAAACTTTATTGTGCTGCA 59.465 36.000 0.00 0.00 43.60 4.41
2171 3210 4.935352 AGGAAACTTTATTGTGCTGCAA 57.065 36.364 2.77 0.00 37.44 4.08
2172 3211 5.275067 AGGAAACTTTATTGTGCTGCAAA 57.725 34.783 2.77 0.00 37.93 3.68
2173 3212 5.291971 AGGAAACTTTATTGTGCTGCAAAG 58.708 37.500 2.77 6.69 37.93 2.77
2174 3213 5.049828 GGAAACTTTATTGTGCTGCAAAGT 58.950 37.500 2.77 7.41 41.67 2.66
2179 3218 7.698836 ACTTTATTGTGCTGCAAAGTTTAAG 57.301 32.000 2.77 6.17 37.84 1.85
2180 3219 7.488322 ACTTTATTGTGCTGCAAAGTTTAAGA 58.512 30.769 2.77 0.00 37.84 2.10
2181 3220 8.143835 ACTTTATTGTGCTGCAAAGTTTAAGAT 58.856 29.630 2.77 0.00 37.84 2.40
2182 3221 8.885494 TTTATTGTGCTGCAAAGTTTAAGATT 57.115 26.923 2.77 0.00 40.91 2.40
2183 3222 8.519492 TTATTGTGCTGCAAAGTTTAAGATTC 57.481 30.769 2.77 0.00 40.91 2.52
2184 3223 5.512753 TGTGCTGCAAAGTTTAAGATTCA 57.487 34.783 2.77 0.00 0.00 2.57
2185 3224 5.900425 TGTGCTGCAAAGTTTAAGATTCAA 58.100 33.333 2.77 0.00 0.00 2.69
2186 3225 5.978919 TGTGCTGCAAAGTTTAAGATTCAAG 59.021 36.000 2.77 0.00 0.00 3.02
2187 3226 6.183360 TGTGCTGCAAAGTTTAAGATTCAAGA 60.183 34.615 2.77 0.00 0.00 3.02
2188 3227 6.142958 GTGCTGCAAAGTTTAAGATTCAAGAC 59.857 38.462 2.77 0.00 0.00 3.01
2189 3228 6.183360 TGCTGCAAAGTTTAAGATTCAAGACA 60.183 34.615 0.00 0.00 0.00 3.41
2190 3229 6.865205 GCTGCAAAGTTTAAGATTCAAGACAT 59.135 34.615 0.00 0.00 0.00 3.06
2191 3230 7.148853 GCTGCAAAGTTTAAGATTCAAGACATG 60.149 37.037 0.00 0.00 0.00 3.21
2192 3231 7.715657 TGCAAAGTTTAAGATTCAAGACATGT 58.284 30.769 0.00 0.00 0.00 3.21
2193 3232 8.196771 TGCAAAGTTTAAGATTCAAGACATGTT 58.803 29.630 0.00 0.00 0.00 2.71
2194 3233 8.694394 GCAAAGTTTAAGATTCAAGACATGTTC 58.306 33.333 0.00 0.00 0.00 3.18
2195 3234 9.956720 CAAAGTTTAAGATTCAAGACATGTTCT 57.043 29.630 0.00 0.00 35.32 3.01
2208 3247 9.809096 TCAAGACATGTTCTATATGAGAGAAAC 57.191 33.333 0.00 0.00 34.78 2.78
2209 3248 9.591792 CAAGACATGTTCTATATGAGAGAAACA 57.408 33.333 0.00 0.00 34.78 2.83
2247 3286 9.457110 TTTACATGTAAAATGTTAGTTGTGCTG 57.543 29.630 25.15 0.00 32.64 4.41
2248 3287 5.920273 ACATGTAAAATGTTAGTTGTGCTGC 59.080 36.000 0.00 0.00 0.00 5.25
2249 3288 5.506686 TGTAAAATGTTAGTTGTGCTGCA 57.493 34.783 0.00 0.00 0.00 4.41
2250 3289 5.277825 TGTAAAATGTTAGTTGTGCTGCAC 58.722 37.500 25.15 25.15 34.56 4.57
2251 3290 4.383850 AAAATGTTAGTTGTGCTGCACA 57.616 36.364 29.99 29.99 43.02 4.57
2252 3291 3.631145 AATGTTAGTTGTGCTGCACAG 57.369 42.857 31.27 0.00 45.39 3.66
2253 3292 2.323968 TGTTAGTTGTGCTGCACAGA 57.676 45.000 31.27 20.76 45.39 3.41
2254 3293 2.849942 TGTTAGTTGTGCTGCACAGAT 58.150 42.857 31.27 25.38 45.39 2.90
2255 3294 2.807967 TGTTAGTTGTGCTGCACAGATC 59.192 45.455 31.27 24.40 45.39 2.75
2256 3295 3.070018 GTTAGTTGTGCTGCACAGATCT 58.930 45.455 31.27 28.49 45.39 2.75
2257 3296 1.805869 AGTTGTGCTGCACAGATCTC 58.194 50.000 31.27 20.32 45.39 2.75
2258 3297 1.071228 AGTTGTGCTGCACAGATCTCA 59.929 47.619 31.27 16.00 45.39 3.27
2259 3298 1.875514 GTTGTGCTGCACAGATCTCAA 59.124 47.619 31.27 15.30 45.39 3.02
2260 3299 2.259266 TGTGCTGCACAGATCTCAAA 57.741 45.000 29.99 5.46 39.62 2.69
2261 3300 2.574450 TGTGCTGCACAGATCTCAAAA 58.426 42.857 29.99 4.68 39.62 2.44
2262 3301 2.291465 TGTGCTGCACAGATCTCAAAAC 59.709 45.455 29.99 1.16 39.62 2.43
2263 3302 2.291465 GTGCTGCACAGATCTCAAAACA 59.709 45.455 26.70 0.00 34.08 2.83
2264 3303 2.950975 TGCTGCACAGATCTCAAAACAA 59.049 40.909 0.00 0.00 0.00 2.83
2265 3304 3.570975 TGCTGCACAGATCTCAAAACAAT 59.429 39.130 0.00 0.00 0.00 2.71
2266 3305 4.761227 TGCTGCACAGATCTCAAAACAATA 59.239 37.500 0.00 0.00 0.00 1.90
2267 3306 5.416639 TGCTGCACAGATCTCAAAACAATAT 59.583 36.000 0.00 0.00 0.00 1.28
2268 3307 6.071784 TGCTGCACAGATCTCAAAACAATATT 60.072 34.615 0.00 0.00 0.00 1.28
2269 3308 6.252869 GCTGCACAGATCTCAAAACAATATTG 59.747 38.462 14.01 14.01 0.00 1.90
2270 3309 7.451501 TGCACAGATCTCAAAACAATATTGA 57.548 32.000 22.16 0.00 35.60 2.57
2271 3310 7.884257 TGCACAGATCTCAAAACAATATTGAA 58.116 30.769 22.16 1.57 36.43 2.69
2272 3311 8.024865 TGCACAGATCTCAAAACAATATTGAAG 58.975 33.333 22.16 10.33 36.43 3.02
2273 3312 8.239314 GCACAGATCTCAAAACAATATTGAAGA 58.761 33.333 22.16 14.51 36.43 2.87
2274 3313 9.770503 CACAGATCTCAAAACAATATTGAAGAG 57.229 33.333 22.16 19.00 36.43 2.85
2275 3314 8.457261 ACAGATCTCAAAACAATATTGAAGAGC 58.543 33.333 22.16 16.00 36.43 4.09
2276 3315 8.675504 CAGATCTCAAAACAATATTGAAGAGCT 58.324 33.333 22.16 17.57 36.43 4.09
2277 3316 9.896645 AGATCTCAAAACAATATTGAAGAGCTA 57.103 29.630 22.16 8.20 36.43 3.32
2289 3328 6.890979 ATTGAAGAGCTAAAATAGATGGGC 57.109 37.500 0.00 0.00 0.00 5.36
2290 3329 4.718961 TGAAGAGCTAAAATAGATGGGCC 58.281 43.478 0.00 0.00 0.00 5.80
2291 3330 4.413520 TGAAGAGCTAAAATAGATGGGCCT 59.586 41.667 4.53 0.00 0.00 5.19
2292 3331 4.363991 AGAGCTAAAATAGATGGGCCTG 57.636 45.455 4.53 0.00 0.00 4.85
2293 3332 3.073650 AGAGCTAAAATAGATGGGCCTGG 59.926 47.826 4.53 0.00 0.00 4.45
2294 3333 2.108952 AGCTAAAATAGATGGGCCTGGG 59.891 50.000 4.53 0.00 0.00 4.45
2295 3334 2.158460 GCTAAAATAGATGGGCCTGGGT 60.158 50.000 4.53 0.00 0.00 4.51
2296 3335 2.459555 AAAATAGATGGGCCTGGGTG 57.540 50.000 4.53 0.00 0.00 4.61
2297 3336 0.106015 AAATAGATGGGCCTGGGTGC 60.106 55.000 4.53 0.00 0.00 5.01
2298 3337 1.288508 AATAGATGGGCCTGGGTGCA 61.289 55.000 4.53 0.00 0.00 4.57
2299 3338 1.713005 ATAGATGGGCCTGGGTGCAG 61.713 60.000 4.53 0.00 0.00 4.41
2300 3339 4.828296 GATGGGCCTGGGTGCAGG 62.828 72.222 4.53 0.00 44.98 4.85
2306 3345 3.957586 CCTGGGTGCAGGTGCTCA 61.958 66.667 3.18 0.00 42.66 4.26
2307 3346 2.113774 CTGGGTGCAGGTGCTCAA 59.886 61.111 3.18 0.00 42.66 3.02
2308 3347 1.529010 CTGGGTGCAGGTGCTCAAA 60.529 57.895 3.18 0.00 42.66 2.69
2309 3348 1.076412 TGGGTGCAGGTGCTCAAAA 60.076 52.632 3.18 0.00 42.66 2.44
2310 3349 0.685785 TGGGTGCAGGTGCTCAAAAA 60.686 50.000 3.18 0.00 42.66 1.94
2416 3461 3.135348 TGCTAAGATGAGGTGCTAAGCAT 59.865 43.478 0.00 0.00 41.91 3.79
2457 3502 3.196901 TGAAGTCGGTAATGCATAGGTGT 59.803 43.478 0.00 0.00 0.00 4.16
2472 3519 8.433421 TGCATAGGTGTTTAACTTCTTATAGC 57.567 34.615 0.00 4.50 0.00 2.97
2535 3582 1.422531 TGCAATGGTGGGCTTCTTTT 58.577 45.000 0.00 0.00 0.00 2.27
2562 3609 4.133013 AGTGTTTTGTCTAGGTTCACGT 57.867 40.909 0.00 0.00 0.00 4.49
2563 3610 4.510571 AGTGTTTTGTCTAGGTTCACGTT 58.489 39.130 0.00 0.00 0.00 3.99
2564 3611 4.939439 AGTGTTTTGTCTAGGTTCACGTTT 59.061 37.500 0.00 0.00 0.00 3.60
2565 3612 5.413523 AGTGTTTTGTCTAGGTTCACGTTTT 59.586 36.000 0.00 0.00 0.00 2.43
2566 3613 5.735892 GTGTTTTGTCTAGGTTCACGTTTTC 59.264 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.553678 TGGAGGTAATACCCTACTTCCTG 58.446 47.826 13.63 0.00 44.50 3.86
48 49 5.075493 TCGATGGAGGTAATACCCTACTTC 58.925 45.833 5.71 4.12 39.75 3.01
69 70 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
88 89 0.524414 GCGGGGGACACAATGTTTAC 59.476 55.000 0.00 0.00 0.00 2.01
96 97 3.636231 CAGAAGGCGGGGGACACA 61.636 66.667 0.00 0.00 0.00 3.72
121 122 0.110373 GAACTGTGCGTTTAAGGCGG 60.110 55.000 5.18 1.24 35.56 6.13
122 123 0.450482 CGAACTGTGCGTTTAAGGCG 60.450 55.000 0.00 0.00 35.56 5.52
129 130 2.280592 GGTCCCGAACTGTGCGTT 60.281 61.111 7.51 0.00 38.91 4.84
145 146 2.352032 GCGGATCTCGGATAGGGGG 61.352 68.421 5.87 0.00 39.69 5.40
155 156 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
189 192 0.669318 TGGAGTTCGATGGCGTGTTC 60.669 55.000 0.00 0.00 38.98 3.18
190 193 0.670546 CTGGAGTTCGATGGCGTGTT 60.671 55.000 0.00 0.00 38.98 3.32
197 200 1.546029 TGTCAGACCTGGAGTTCGATG 59.454 52.381 0.00 0.00 0.00 3.84
210 213 0.321653 GTCATGTGGGGGTGTCAGAC 60.322 60.000 0.00 0.00 0.00 3.51
222 225 6.322456 TCCTCTTCCTATGTCTTAGTCATGTG 59.678 42.308 2.40 0.00 0.00 3.21
223 226 6.436027 TCCTCTTCCTATGTCTTAGTCATGT 58.564 40.000 2.40 0.00 0.00 3.21
225 228 7.147637 GGTTTCCTCTTCCTATGTCTTAGTCAT 60.148 40.741 0.00 0.00 0.00 3.06
226 229 6.154706 GGTTTCCTCTTCCTATGTCTTAGTCA 59.845 42.308 0.00 0.00 0.00 3.41
227 230 6.154706 TGGTTTCCTCTTCCTATGTCTTAGTC 59.845 42.308 0.00 0.00 0.00 2.59
235 238 5.615289 CAGGTATGGTTTCCTCTTCCTATG 58.385 45.833 0.00 0.00 30.91 2.23
236 239 4.103311 GCAGGTATGGTTTCCTCTTCCTAT 59.897 45.833 0.00 0.00 30.91 2.57
238 241 2.239907 GCAGGTATGGTTTCCTCTTCCT 59.760 50.000 0.00 0.00 30.91 3.36
240 243 2.026262 TGGCAGGTATGGTTTCCTCTTC 60.026 50.000 0.00 0.00 30.91 2.87
243 246 2.576615 GATGGCAGGTATGGTTTCCTC 58.423 52.381 0.00 0.00 30.91 3.71
268 271 0.530211 CGTGTGTTGGGTTCGTGGTA 60.530 55.000 0.00 0.00 0.00 3.25
281 284 0.108585 AAAGATGCTGGACCGTGTGT 59.891 50.000 0.00 0.00 0.00 3.72
286 289 3.840831 TCTGAAAGATGCTGGACCG 57.159 52.632 0.00 0.00 38.67 4.79
300 303 4.159901 TGCATCGGCGGCATCTGA 62.160 61.111 10.53 0.00 45.35 3.27
310 313 1.012086 CAGATTGTGGTCTGCATCGG 58.988 55.000 0.00 0.00 39.19 4.18
320 323 2.422479 CAGGAACAGATGCAGATTGTGG 59.578 50.000 0.00 0.00 0.00 4.17
363 366 4.717629 CGTCTGTTCCAGCGCCGA 62.718 66.667 2.29 0.00 0.00 5.54
387 390 2.429610 GTGTCCTAGGGCTTCGTCATTA 59.570 50.000 15.92 0.00 0.00 1.90
390 393 0.541063 TGTGTCCTAGGGCTTCGTCA 60.541 55.000 15.92 3.56 0.00 4.35
392 395 1.258445 CCTGTGTCCTAGGGCTTCGT 61.258 60.000 15.92 0.00 0.00 3.85
395 398 2.685202 GACCTGTGTCCTAGGGCTT 58.315 57.895 15.92 0.00 40.38 4.35
432 435 3.197766 TCAAGCAAGGATAGTTCGATGGT 59.802 43.478 0.00 0.00 0.00 3.55
435 438 4.832248 TGTTCAAGCAAGGATAGTTCGAT 58.168 39.130 0.00 0.00 0.00 3.59
436 439 4.265904 TGTTCAAGCAAGGATAGTTCGA 57.734 40.909 0.00 0.00 0.00 3.71
438 441 6.319141 AGTTTGTTCAAGCAAGGATAGTTC 57.681 37.500 2.66 0.00 0.00 3.01
439 442 7.224297 TCTAGTTTGTTCAAGCAAGGATAGTT 58.776 34.615 2.66 0.00 0.00 2.24
440 443 6.769512 TCTAGTTTGTTCAAGCAAGGATAGT 58.230 36.000 2.66 0.00 0.00 2.12
442 445 7.336931 GGAATCTAGTTTGTTCAAGCAAGGATA 59.663 37.037 2.66 0.00 0.00 2.59
456 459 7.839907 TGGGAATGAATTTGGAATCTAGTTTG 58.160 34.615 0.00 0.00 0.00 2.93
458 461 7.093333 GGTTGGGAATGAATTTGGAATCTAGTT 60.093 37.037 0.00 0.00 0.00 2.24
460 463 6.380846 TGGTTGGGAATGAATTTGGAATCTAG 59.619 38.462 0.00 0.00 0.00 2.43
462 465 5.092968 TGGTTGGGAATGAATTTGGAATCT 58.907 37.500 0.00 0.00 0.00 2.40
464 467 6.100134 CCTATGGTTGGGAATGAATTTGGAAT 59.900 38.462 0.00 0.00 0.00 3.01
473 476 1.488812 CGGTCCTATGGTTGGGAATGA 59.511 52.381 0.00 0.00 33.75 2.57
477 480 1.420430 GATCGGTCCTATGGTTGGGA 58.580 55.000 0.00 0.00 0.00 4.37
496 499 2.287668 CCTATCCTACTTTGACGAGGCG 60.288 54.545 0.00 0.00 0.00 5.52
501 504 7.466050 GCAATTTCTTCCTATCCTACTTTGACG 60.466 40.741 0.00 0.00 0.00 4.35
507 510 4.654262 TCCGCAATTTCTTCCTATCCTACT 59.346 41.667 0.00 0.00 0.00 2.57
509 512 5.130477 ACTTCCGCAATTTCTTCCTATCCTA 59.870 40.000 0.00 0.00 0.00 2.94
515 518 4.287766 ACTACTTCCGCAATTTCTTCCT 57.712 40.909 0.00 0.00 0.00 3.36
516 519 6.679327 AATACTACTTCCGCAATTTCTTCC 57.321 37.500 0.00 0.00 0.00 3.46
523 526 9.075678 ACTACTGTATAATACTACTTCCGCAAT 57.924 33.333 0.00 0.00 0.00 3.56
524 527 8.455903 ACTACTGTATAATACTACTTCCGCAA 57.544 34.615 0.00 0.00 0.00 4.85
525 528 9.730705 ATACTACTGTATAATACTACTTCCGCA 57.269 33.333 0.00 0.00 37.59 5.69
579 582 9.987272 CAATTGGATAAGACTGTCTGTATGATA 57.013 33.333 11.71 0.00 0.00 2.15
580 583 8.708378 TCAATTGGATAAGACTGTCTGTATGAT 58.292 33.333 11.71 0.00 0.00 2.45
581 584 8.078060 TCAATTGGATAAGACTGTCTGTATGA 57.922 34.615 11.71 5.38 0.00 2.15
582 585 8.607459 GTTCAATTGGATAAGACTGTCTGTATG 58.393 37.037 11.71 3.26 0.00 2.39
583 586 8.543774 AGTTCAATTGGATAAGACTGTCTGTAT 58.456 33.333 11.71 10.83 0.00 2.29
584 587 7.907389 AGTTCAATTGGATAAGACTGTCTGTA 58.093 34.615 11.71 6.62 0.00 2.74
585 588 6.773638 AGTTCAATTGGATAAGACTGTCTGT 58.226 36.000 11.71 3.29 0.00 3.41
586 589 7.678947 AAGTTCAATTGGATAAGACTGTCTG 57.321 36.000 11.71 0.00 0.00 3.51
812 816 3.093057 ACCTATGCAGAGACAGAGACA 57.907 47.619 10.62 0.00 30.28 3.41
865 869 6.590292 GTCAGAACGTGAAATCCAAAGATCTA 59.410 38.462 0.00 0.00 36.74 1.98
866 870 5.409826 GTCAGAACGTGAAATCCAAAGATCT 59.590 40.000 0.00 0.00 36.74 2.75
867 871 5.179368 TGTCAGAACGTGAAATCCAAAGATC 59.821 40.000 0.00 0.00 36.74 2.75
868 872 5.049405 GTGTCAGAACGTGAAATCCAAAGAT 60.049 40.000 0.00 0.00 36.74 2.40
870 874 4.527564 GTGTCAGAACGTGAAATCCAAAG 58.472 43.478 0.00 0.00 36.74 2.77
871 875 3.314080 GGTGTCAGAACGTGAAATCCAAA 59.686 43.478 0.00 0.00 36.74 3.28
872 876 2.875933 GGTGTCAGAACGTGAAATCCAA 59.124 45.455 0.00 0.00 36.74 3.53
873 877 2.489971 GGTGTCAGAACGTGAAATCCA 58.510 47.619 0.00 0.00 36.74 3.41
874 878 1.459592 CGGTGTCAGAACGTGAAATCC 59.540 52.381 0.00 0.00 36.74 3.01
875 879 2.155155 GTCGGTGTCAGAACGTGAAATC 59.845 50.000 0.00 0.00 36.74 2.17
907 911 1.202663 TGCTACCTTTTGGCGTGTGTA 60.203 47.619 0.00 0.00 45.59 2.90
908 912 0.464735 TGCTACCTTTTGGCGTGTGT 60.465 50.000 0.00 0.00 45.59 3.72
1029 1961 6.426937 TCTTGGACAGATTGTAGTAAACTTGC 59.573 38.462 0.00 0.00 0.00 4.01
1464 2396 0.320421 GCCAACGTAAGAGCACCAGA 60.320 55.000 0.00 0.00 43.62 3.86
1467 2399 2.388232 CGGCCAACGTAAGAGCACC 61.388 63.158 2.24 0.00 43.62 5.01
1473 2405 2.100631 CAGCTCCGGCCAACGTAAG 61.101 63.158 2.24 0.00 42.24 2.34
1577 2509 4.908966 ACTTATTACGTACAAACCACGC 57.091 40.909 0.00 0.00 43.10 5.34
1588 2520 6.855836 TGATCGAGGTGTTTACTTATTACGT 58.144 36.000 0.00 0.00 0.00 3.57
1589 2521 7.925703 ATGATCGAGGTGTTTACTTATTACG 57.074 36.000 0.00 0.00 0.00 3.18
1590 2522 9.916397 CAAATGATCGAGGTGTTTACTTATTAC 57.084 33.333 0.00 0.00 0.00 1.89
1591 2523 9.104965 CCAAATGATCGAGGTGTTTACTTATTA 57.895 33.333 0.00 0.00 0.00 0.98
1674 2606 2.364324 ACAAAGAGCCGTACAACTCTCA 59.636 45.455 13.46 0.00 42.41 3.27
1687 2619 5.719173 ACTTCTCATAGTCTCACAAAGAGC 58.281 41.667 0.00 0.00 44.35 4.09
1696 2735 4.215399 CCATCGAGGACTTCTCATAGTCTC 59.785 50.000 0.00 0.00 43.26 3.36
1706 2745 1.153349 GCCCACCATCGAGGACTTC 60.153 63.158 0.00 0.00 41.22 3.01
1758 2797 0.179070 GATGAAGAGGAGAACCCCGC 60.179 60.000 0.00 0.00 36.73 6.13
1789 2828 0.528033 TTTCTCGCGACGTTGTTCCA 60.528 50.000 3.71 0.00 0.00 3.53
1808 2847 1.889829 GGCTCCTATATGTCAGACGCT 59.110 52.381 0.00 0.00 0.00 5.07
1809 2848 1.889829 AGGCTCCTATATGTCAGACGC 59.110 52.381 0.00 0.00 0.00 5.19
1810 2849 3.417101 AGAGGCTCCTATATGTCAGACG 58.583 50.000 11.71 0.00 0.00 4.18
1811 2850 3.761752 GGAGAGGCTCCTATATGTCAGAC 59.238 52.174 11.71 0.00 46.41 3.51
1812 2851 4.040936 GGAGAGGCTCCTATATGTCAGA 57.959 50.000 11.71 0.00 46.41 3.27
1823 2862 0.825840 ATCTGCTACGGAGAGGCTCC 60.826 60.000 11.71 3.36 46.44 4.70
1824 2863 0.313672 CATCTGCTACGGAGAGGCTC 59.686 60.000 6.34 6.34 0.00 4.70
1853 2892 6.036470 GCAGGTGCTCTAAAACATATTTTCC 58.964 40.000 0.00 0.00 37.36 3.13
1854 2893 6.528072 GTGCAGGTGCTCTAAAACATATTTTC 59.472 38.462 3.18 0.00 42.66 2.29
1855 2894 6.389906 GTGCAGGTGCTCTAAAACATATTTT 58.610 36.000 3.18 0.00 42.66 1.82
1856 2895 5.105756 GGTGCAGGTGCTCTAAAACATATTT 60.106 40.000 3.18 0.00 42.66 1.40
1857 2896 4.399303 GGTGCAGGTGCTCTAAAACATATT 59.601 41.667 3.18 0.00 42.66 1.28
1858 2897 3.947834 GGTGCAGGTGCTCTAAAACATAT 59.052 43.478 3.18 0.00 42.66 1.78
1859 2898 3.009033 AGGTGCAGGTGCTCTAAAACATA 59.991 43.478 3.18 0.00 42.66 2.29
1860 2899 2.162681 GGTGCAGGTGCTCTAAAACAT 58.837 47.619 3.18 0.00 42.66 2.71
1861 2900 1.142870 AGGTGCAGGTGCTCTAAAACA 59.857 47.619 3.18 0.00 42.66 2.83
1862 2901 1.897560 AGGTGCAGGTGCTCTAAAAC 58.102 50.000 3.18 0.00 42.66 2.43
1863 2902 2.027192 CCTAGGTGCAGGTGCTCTAAAA 60.027 50.000 0.00 0.00 42.66 1.52
1864 2903 1.555075 CCTAGGTGCAGGTGCTCTAAA 59.445 52.381 0.00 0.00 42.66 1.85
1865 2904 1.195115 CCTAGGTGCAGGTGCTCTAA 58.805 55.000 0.00 0.00 42.66 2.10
1866 2905 1.330655 GCCTAGGTGCAGGTGCTCTA 61.331 60.000 11.31 4.80 42.66 2.43
1867 2906 2.664081 GCCTAGGTGCAGGTGCTCT 61.664 63.158 11.31 3.89 42.66 4.09
1868 2907 2.124942 GCCTAGGTGCAGGTGCTC 60.125 66.667 11.31 0.00 42.66 4.26
1869 2908 3.721706 GGCCTAGGTGCAGGTGCT 61.722 66.667 11.31 0.00 42.66 4.40
1870 2909 4.803908 GGGCCTAGGTGCAGGTGC 62.804 72.222 11.31 0.00 38.05 5.01
1871 2910 2.615227 GATGGGCCTAGGTGCAGGTG 62.615 65.000 11.31 0.00 38.05 4.00
1872 2911 2.286425 ATGGGCCTAGGTGCAGGT 60.286 61.111 11.31 0.00 38.05 4.00
1873 2912 0.764369 TAGATGGGCCTAGGTGCAGG 60.764 60.000 11.31 0.00 38.86 4.85
1874 2913 1.277557 GATAGATGGGCCTAGGTGCAG 59.722 57.143 11.31 0.00 0.00 4.41
1875 2914 1.352083 GATAGATGGGCCTAGGTGCA 58.648 55.000 11.31 0.00 0.00 4.57
1876 2915 0.615850 GGATAGATGGGCCTAGGTGC 59.384 60.000 11.31 0.00 0.00 5.01
1877 2916 2.334006 AGGATAGATGGGCCTAGGTG 57.666 55.000 11.31 0.00 0.00 4.00
1878 2917 3.767309 CTAGGATAGATGGGCCTAGGT 57.233 52.381 11.31 0.00 44.80 3.08
1881 2920 1.722271 TGGCTAGGATAGATGGGCCTA 59.278 52.381 4.53 0.00 42.77 3.93
1882 2921 0.493639 TGGCTAGGATAGATGGGCCT 59.506 55.000 4.53 0.00 42.77 5.19
1883 2922 1.488393 GATGGCTAGGATAGATGGGCC 59.512 57.143 0.00 0.00 42.77 5.80
1884 2923 1.488393 GGATGGCTAGGATAGATGGGC 59.512 57.143 0.00 0.00 42.77 5.36
1885 2924 2.837947 TGGATGGCTAGGATAGATGGG 58.162 52.381 0.00 0.00 42.77 4.00
1886 2925 5.447778 AAATGGATGGCTAGGATAGATGG 57.552 43.478 0.00 0.00 42.77 3.51
1887 2926 6.093219 CGAAAAATGGATGGCTAGGATAGATG 59.907 42.308 0.00 0.00 42.77 2.90
1888 2927 6.176183 CGAAAAATGGATGGCTAGGATAGAT 58.824 40.000 0.00 0.00 42.77 1.98
1889 2928 5.551233 CGAAAAATGGATGGCTAGGATAGA 58.449 41.667 0.00 0.00 42.77 1.98
1890 2929 4.154918 GCGAAAAATGGATGGCTAGGATAG 59.845 45.833 0.00 0.00 43.09 2.08
1891 2930 4.072131 GCGAAAAATGGATGGCTAGGATA 58.928 43.478 0.00 0.00 0.00 2.59
1892 2931 2.887152 GCGAAAAATGGATGGCTAGGAT 59.113 45.455 0.00 0.00 0.00 3.24
1893 2932 2.297701 GCGAAAAATGGATGGCTAGGA 58.702 47.619 0.00 0.00 0.00 2.94
1894 2933 2.023673 TGCGAAAAATGGATGGCTAGG 58.976 47.619 0.00 0.00 0.00 3.02
1895 2934 3.607775 CGATGCGAAAAATGGATGGCTAG 60.608 47.826 0.00 0.00 0.00 3.42
1896 2935 2.290367 CGATGCGAAAAATGGATGGCTA 59.710 45.455 0.00 0.00 0.00 3.93
1897 2936 1.066002 CGATGCGAAAAATGGATGGCT 59.934 47.619 0.00 0.00 0.00 4.75
1898 2937 1.202290 ACGATGCGAAAAATGGATGGC 60.202 47.619 0.00 0.00 0.00 4.40
1899 2938 2.097304 TCACGATGCGAAAAATGGATGG 59.903 45.455 0.00 0.00 0.00 3.51
1900 2939 3.403613 TCACGATGCGAAAAATGGATG 57.596 42.857 0.00 0.00 0.00 3.51
1901 2940 4.637483 AATCACGATGCGAAAAATGGAT 57.363 36.364 0.00 0.00 0.00 3.41
1902 2941 4.165036 CAAATCACGATGCGAAAAATGGA 58.835 39.130 0.00 0.00 0.00 3.41
1903 2942 3.919804 ACAAATCACGATGCGAAAAATGG 59.080 39.130 0.00 0.00 0.00 3.16
1904 2943 4.718998 GCACAAATCACGATGCGAAAAATG 60.719 41.667 0.00 0.00 0.00 2.32
1905 2944 3.364621 GCACAAATCACGATGCGAAAAAT 59.635 39.130 0.00 0.00 0.00 1.82
1906 2945 2.723658 GCACAAATCACGATGCGAAAAA 59.276 40.909 0.00 0.00 0.00 1.94
1907 2946 2.287248 TGCACAAATCACGATGCGAAAA 60.287 40.909 0.00 0.00 41.07 2.29
1908 2947 1.265365 TGCACAAATCACGATGCGAAA 59.735 42.857 0.00 0.00 41.07 3.46
1909 2948 0.871057 TGCACAAATCACGATGCGAA 59.129 45.000 0.00 0.00 41.07 4.70
1910 2949 0.871057 TTGCACAAATCACGATGCGA 59.129 45.000 0.00 0.00 41.07 5.10
1911 2950 1.253116 CTTGCACAAATCACGATGCG 58.747 50.000 0.00 0.00 41.07 4.73
1912 2951 0.986992 GCTTGCACAAATCACGATGC 59.013 50.000 0.00 0.00 38.59 3.91
1913 2952 1.980844 GTGCTTGCACAAATCACGATG 59.019 47.619 19.36 0.00 0.00 3.84
1914 2953 1.608109 TGTGCTTGCACAAATCACGAT 59.392 42.857 23.78 0.00 31.35 3.73
1915 2954 1.020437 TGTGCTTGCACAAATCACGA 58.980 45.000 23.78 0.32 31.35 4.35
1916 2955 2.054687 ATGTGCTTGCACAAATCACG 57.945 45.000 28.36 0.00 38.69 4.35
1917 2956 4.053295 AGAAATGTGCTTGCACAAATCAC 58.947 39.130 28.36 18.13 38.69 3.06
1918 2957 4.325028 AGAAATGTGCTTGCACAAATCA 57.675 36.364 28.36 8.69 38.69 2.57
1919 2958 5.464389 AGAAAGAAATGTGCTTGCACAAATC 59.536 36.000 28.36 25.81 38.69 2.17
1920 2959 5.362263 AGAAAGAAATGTGCTTGCACAAAT 58.638 33.333 28.36 20.54 38.69 2.32
1921 2960 4.757594 AGAAAGAAATGTGCTTGCACAAA 58.242 34.783 28.36 10.03 38.69 2.83
1922 2961 4.389890 AGAAAGAAATGTGCTTGCACAA 57.610 36.364 28.36 14.52 38.69 3.33
1923 2962 4.389890 AAGAAAGAAATGTGCTTGCACA 57.610 36.364 27.15 27.15 39.62 4.57
1924 2963 5.723492 AAAAGAAAGAAATGTGCTTGCAC 57.277 34.783 17.73 17.73 0.00 4.57
1963 3002 9.750125 GGAAGTTTGAAGTTCAAAATATGTTCT 57.250 29.630 28.05 17.66 46.53 3.01
1964 3003 9.528018 TGGAAGTTTGAAGTTCAAAATATGTTC 57.472 29.630 28.05 20.79 46.53 3.18
1965 3004 9.313118 GTGGAAGTTTGAAGTTCAAAATATGTT 57.687 29.630 28.05 14.79 46.53 2.71
1966 3005 8.474025 TGTGGAAGTTTGAAGTTCAAAATATGT 58.526 29.630 28.05 15.11 46.53 2.29
1967 3006 8.870160 TGTGGAAGTTTGAAGTTCAAAATATG 57.130 30.769 28.05 0.00 46.53 1.78
1968 3007 7.653311 GCTGTGGAAGTTTGAAGTTCAAAATAT 59.347 33.333 28.05 18.36 46.53 1.28
1969 3008 6.978080 GCTGTGGAAGTTTGAAGTTCAAAATA 59.022 34.615 28.05 12.86 46.53 1.40
1970 3009 5.812127 GCTGTGGAAGTTTGAAGTTCAAAAT 59.188 36.000 28.05 25.06 46.53 1.82
1971 3010 5.167845 GCTGTGGAAGTTTGAAGTTCAAAA 58.832 37.500 28.05 12.93 46.53 2.44
1972 3011 4.219507 TGCTGTGGAAGTTTGAAGTTCAAA 59.780 37.500 23.91 23.91 43.37 2.69
1973 3012 3.761218 TGCTGTGGAAGTTTGAAGTTCAA 59.239 39.130 14.35 14.35 39.55 2.69
1974 3013 3.351740 TGCTGTGGAAGTTTGAAGTTCA 58.648 40.909 0.08 0.08 39.55 3.18
1975 3014 3.627577 TCTGCTGTGGAAGTTTGAAGTTC 59.372 43.478 0.00 0.00 37.57 3.01
1976 3015 3.620488 TCTGCTGTGGAAGTTTGAAGTT 58.380 40.909 0.00 0.00 0.00 2.66
1977 3016 3.209410 CTCTGCTGTGGAAGTTTGAAGT 58.791 45.455 0.00 0.00 0.00 3.01
1978 3017 2.031333 GCTCTGCTGTGGAAGTTTGAAG 60.031 50.000 0.00 0.00 0.00 3.02
1979 3018 1.949525 GCTCTGCTGTGGAAGTTTGAA 59.050 47.619 0.00 0.00 0.00 2.69
1980 3019 1.134128 TGCTCTGCTGTGGAAGTTTGA 60.134 47.619 0.00 0.00 0.00 2.69
1981 3020 1.311859 TGCTCTGCTGTGGAAGTTTG 58.688 50.000 0.00 0.00 0.00 2.93
1982 3021 2.057137 TTGCTCTGCTGTGGAAGTTT 57.943 45.000 0.00 0.00 0.00 2.66
1983 3022 1.952296 CTTTGCTCTGCTGTGGAAGTT 59.048 47.619 0.48 0.00 0.00 2.66
1984 3023 1.602311 CTTTGCTCTGCTGTGGAAGT 58.398 50.000 0.48 0.00 0.00 3.01
1985 3024 0.240411 GCTTTGCTCTGCTGTGGAAG 59.760 55.000 0.48 0.00 0.00 3.46
1986 3025 0.179009 AGCTTTGCTCTGCTGTGGAA 60.179 50.000 0.00 0.00 38.21 3.53
1987 3026 0.179009 AAGCTTTGCTCTGCTGTGGA 60.179 50.000 0.00 0.00 38.25 4.02
1988 3027 0.672342 AAAGCTTTGCTCTGCTGTGG 59.328 50.000 11.80 0.00 38.25 4.17
1989 3028 1.607628 AGAAAGCTTTGCTCTGCTGTG 59.392 47.619 18.30 0.00 38.25 3.66
1990 3029 1.978454 AGAAAGCTTTGCTCTGCTGT 58.022 45.000 18.30 0.00 38.25 4.40
1991 3030 3.940221 AGATAGAAAGCTTTGCTCTGCTG 59.060 43.478 18.30 0.00 38.25 4.41
1992 3031 4.219264 AGATAGAAAGCTTTGCTCTGCT 57.781 40.909 18.30 8.71 38.25 4.24
1993 3032 5.355596 TCTAGATAGAAAGCTTTGCTCTGC 58.644 41.667 18.30 0.25 38.25 4.26
1994 3033 7.927629 AGATTCTAGATAGAAAGCTTTGCTCTG 59.072 37.037 18.30 9.82 44.63 3.35
1995 3034 7.927629 CAGATTCTAGATAGAAAGCTTTGCTCT 59.072 37.037 18.30 16.35 44.63 4.09
1996 3035 7.171337 CCAGATTCTAGATAGAAAGCTTTGCTC 59.829 40.741 18.30 9.99 44.63 4.26
1997 3036 6.991531 CCAGATTCTAGATAGAAAGCTTTGCT 59.008 38.462 18.30 15.16 44.63 3.91
1998 3037 6.204495 CCCAGATTCTAGATAGAAAGCTTTGC 59.796 42.308 18.30 8.41 44.63 3.68
1999 3038 7.504403 TCCCAGATTCTAGATAGAAAGCTTTG 58.496 38.462 18.30 0.00 44.63 2.77
2000 3039 7.682787 TCCCAGATTCTAGATAGAAAGCTTT 57.317 36.000 12.53 12.53 44.63 3.51
2001 3040 7.870426 ATCCCAGATTCTAGATAGAAAGCTT 57.130 36.000 6.40 0.00 44.63 3.74
2002 3041 8.964533 TTATCCCAGATTCTAGATAGAAAGCT 57.035 34.615 6.40 4.87 44.63 3.74
2010 3049 9.844257 CTGAAAGTTTTATCCCAGATTCTAGAT 57.156 33.333 0.00 4.36 0.00 1.98
2011 3050 9.046846 TCTGAAAGTTTTATCCCAGATTCTAGA 57.953 33.333 0.00 0.00 33.76 2.43
2012 3051 9.844257 ATCTGAAAGTTTTATCCCAGATTCTAG 57.156 33.333 9.74 0.00 37.93 2.43
2014 3053 9.539194 AAATCTGAAAGTTTTATCCCAGATTCT 57.461 29.630 20.89 13.04 45.22 2.40
2123 3162 9.490379 AACTAGAACGTGAGATAAAACTTTCAT 57.510 29.630 0.00 0.00 29.53 2.57
2124 3163 8.882415 AACTAGAACGTGAGATAAAACTTTCA 57.118 30.769 0.00 0.00 29.53 2.69
2126 3165 9.420551 CCTAACTAGAACGTGAGATAAAACTTT 57.579 33.333 0.00 0.00 0.00 2.66
2127 3166 8.800332 TCCTAACTAGAACGTGAGATAAAACTT 58.200 33.333 0.00 0.00 0.00 2.66
2128 3167 8.345724 TCCTAACTAGAACGTGAGATAAAACT 57.654 34.615 0.00 0.00 0.00 2.66
2129 3168 8.976986 TTCCTAACTAGAACGTGAGATAAAAC 57.023 34.615 0.00 0.00 0.00 2.43
2130 3169 9.415544 GTTTCCTAACTAGAACGTGAGATAAAA 57.584 33.333 0.00 0.00 0.00 1.52
2131 3170 8.800332 AGTTTCCTAACTAGAACGTGAGATAAA 58.200 33.333 0.00 0.00 42.73 1.40
2132 3171 8.345724 AGTTTCCTAACTAGAACGTGAGATAA 57.654 34.615 0.00 0.00 42.73 1.75
2133 3172 7.934855 AGTTTCCTAACTAGAACGTGAGATA 57.065 36.000 0.00 0.00 42.73 1.98
2134 3173 6.837471 AGTTTCCTAACTAGAACGTGAGAT 57.163 37.500 0.00 0.00 42.73 2.75
2135 3174 6.645790 AAGTTTCCTAACTAGAACGTGAGA 57.354 37.500 0.00 0.00 43.74 3.27
2136 3175 8.983307 ATAAAGTTTCCTAACTAGAACGTGAG 57.017 34.615 0.00 0.00 43.74 3.51
2137 3176 9.199982 CAATAAAGTTTCCTAACTAGAACGTGA 57.800 33.333 0.00 0.00 43.74 4.35
2138 3177 8.985805 ACAATAAAGTTTCCTAACTAGAACGTG 58.014 33.333 0.00 0.00 43.74 4.49
2139 3178 8.985805 CACAATAAAGTTTCCTAACTAGAACGT 58.014 33.333 0.00 0.00 43.74 3.99
2140 3179 7.955864 GCACAATAAAGTTTCCTAACTAGAACG 59.044 37.037 0.00 0.00 43.74 3.95
2141 3180 9.000486 AGCACAATAAAGTTTCCTAACTAGAAC 58.000 33.333 0.00 0.00 43.74 3.01
2142 3181 8.999431 CAGCACAATAAAGTTTCCTAACTAGAA 58.001 33.333 0.00 0.00 43.74 2.10
2143 3182 7.119262 GCAGCACAATAAAGTTTCCTAACTAGA 59.881 37.037 0.00 0.00 43.74 2.43
2144 3183 7.094805 TGCAGCACAATAAAGTTTCCTAACTAG 60.095 37.037 0.00 0.00 43.74 2.57
2145 3184 6.712998 TGCAGCACAATAAAGTTTCCTAACTA 59.287 34.615 0.00 0.00 43.74 2.24
2146 3185 5.534654 TGCAGCACAATAAAGTTTCCTAACT 59.465 36.000 0.00 0.00 46.44 2.24
2147 3186 5.768317 TGCAGCACAATAAAGTTTCCTAAC 58.232 37.500 0.00 0.00 34.36 2.34
2148 3187 6.398234 TTGCAGCACAATAAAGTTTCCTAA 57.602 33.333 0.00 0.00 31.73 2.69
2149 3188 6.040391 ACTTTGCAGCACAATAAAGTTTCCTA 59.960 34.615 0.00 0.00 39.56 2.94
2150 3189 4.935352 TTGCAGCACAATAAAGTTTCCT 57.065 36.364 0.00 0.00 31.73 3.36
2151 3190 5.049828 ACTTTGCAGCACAATAAAGTTTCC 58.950 37.500 0.00 0.00 39.56 3.13
2152 3191 6.588348 AACTTTGCAGCACAATAAAGTTTC 57.412 33.333 14.01 0.00 45.74 2.78
2155 3194 7.488322 TCTTAAACTTTGCAGCACAATAAAGT 58.512 30.769 0.00 0.00 43.11 2.66
2156 3195 7.928908 TCTTAAACTTTGCAGCACAATAAAG 57.071 32.000 0.00 0.00 38.31 1.85
2157 3196 8.885494 AATCTTAAACTTTGCAGCACAATAAA 57.115 26.923 0.00 0.00 38.31 1.40
2158 3197 8.140628 TGAATCTTAAACTTTGCAGCACAATAA 58.859 29.630 0.00 0.00 38.31 1.40
2159 3198 7.656412 TGAATCTTAAACTTTGCAGCACAATA 58.344 30.769 0.00 0.00 38.31 1.90
2160 3199 6.514947 TGAATCTTAAACTTTGCAGCACAAT 58.485 32.000 0.00 0.00 38.31 2.71
2161 3200 5.900425 TGAATCTTAAACTTTGCAGCACAA 58.100 33.333 0.00 0.00 36.13 3.33
2162 3201 5.512753 TGAATCTTAAACTTTGCAGCACA 57.487 34.783 0.00 0.00 0.00 4.57
2163 3202 6.142958 GTCTTGAATCTTAAACTTTGCAGCAC 59.857 38.462 0.00 0.00 0.00 4.40
2164 3203 6.183360 TGTCTTGAATCTTAAACTTTGCAGCA 60.183 34.615 0.00 0.00 0.00 4.41
2165 3204 6.208644 TGTCTTGAATCTTAAACTTTGCAGC 58.791 36.000 0.00 0.00 0.00 5.25
2166 3205 7.864379 ACATGTCTTGAATCTTAAACTTTGCAG 59.136 33.333 0.00 0.00 0.00 4.41
2167 3206 7.715657 ACATGTCTTGAATCTTAAACTTTGCA 58.284 30.769 0.00 0.00 0.00 4.08
2168 3207 8.579682 AACATGTCTTGAATCTTAAACTTTGC 57.420 30.769 0.00 0.00 0.00 3.68
2169 3208 9.956720 AGAACATGTCTTGAATCTTAAACTTTG 57.043 29.630 0.00 0.00 29.66 2.77
2182 3221 9.809096 GTTTCTCTCATATAGAACATGTCTTGA 57.191 33.333 0.00 0.00 37.84 3.02
2183 3222 9.591792 TGTTTCTCTCATATAGAACATGTCTTG 57.408 33.333 0.00 0.00 37.84 3.02
2221 3260 9.457110 CAGCACAACTAACATTTTACATGTAAA 57.543 29.630 23.91 23.91 33.63 2.01
2222 3261 7.593273 GCAGCACAACTAACATTTTACATGTAA 59.407 33.333 14.35 14.35 0.00 2.41
2223 3262 7.081349 GCAGCACAACTAACATTTTACATGTA 58.919 34.615 0.08 0.08 0.00 2.29
2224 3263 5.920273 GCAGCACAACTAACATTTTACATGT 59.080 36.000 2.69 2.69 0.00 3.21
2225 3264 5.919707 TGCAGCACAACTAACATTTTACATG 59.080 36.000 0.00 0.00 0.00 3.21
2226 3265 5.920273 GTGCAGCACAACTAACATTTTACAT 59.080 36.000 21.22 0.00 34.08 2.29
2227 3266 5.163612 TGTGCAGCACAACTAACATTTTACA 60.164 36.000 26.34 0.00 41.69 2.41
2228 3267 5.277825 TGTGCAGCACAACTAACATTTTAC 58.722 37.500 26.34 0.00 41.69 2.01
2229 3268 5.298026 TCTGTGCAGCACAACTAACATTTTA 59.702 36.000 27.96 1.50 44.08 1.52
2230 3269 4.097741 TCTGTGCAGCACAACTAACATTTT 59.902 37.500 27.96 0.00 44.08 1.82
2231 3270 3.631686 TCTGTGCAGCACAACTAACATTT 59.368 39.130 27.96 0.00 44.08 2.32
2232 3271 3.213506 TCTGTGCAGCACAACTAACATT 58.786 40.909 27.96 0.00 44.08 2.71
2233 3272 2.849942 TCTGTGCAGCACAACTAACAT 58.150 42.857 27.96 0.00 44.08 2.71
2234 3273 2.323968 TCTGTGCAGCACAACTAACA 57.676 45.000 27.96 4.57 44.08 2.41
2235 3274 3.070018 AGATCTGTGCAGCACAACTAAC 58.930 45.455 27.96 16.84 44.08 2.34
2236 3275 3.244181 TGAGATCTGTGCAGCACAACTAA 60.244 43.478 27.96 17.17 44.08 2.24
2237 3276 2.299867 TGAGATCTGTGCAGCACAACTA 59.700 45.455 27.96 16.90 44.08 2.24
2238 3277 1.071228 TGAGATCTGTGCAGCACAACT 59.929 47.619 27.96 24.31 44.08 3.16
2239 3278 1.516161 TGAGATCTGTGCAGCACAAC 58.484 50.000 27.96 20.60 44.08 3.32
2240 3279 2.259266 TTGAGATCTGTGCAGCACAA 57.741 45.000 27.96 18.79 44.08 3.33
2241 3280 2.259266 TTTGAGATCTGTGCAGCACA 57.741 45.000 26.63 26.63 42.45 4.57
2242 3281 2.291465 TGTTTTGAGATCTGTGCAGCAC 59.709 45.455 19.37 19.37 34.56 4.40
2243 3282 2.574450 TGTTTTGAGATCTGTGCAGCA 58.426 42.857 0.00 0.00 0.00 4.41
2244 3283 3.631145 TTGTTTTGAGATCTGTGCAGC 57.369 42.857 0.00 0.00 0.00 5.25
2245 3284 7.532571 TCAATATTGTTTTGAGATCTGTGCAG 58.467 34.615 14.97 0.00 0.00 4.41
2246 3285 7.451501 TCAATATTGTTTTGAGATCTGTGCA 57.548 32.000 14.97 0.00 0.00 4.57
2247 3286 8.239314 TCTTCAATATTGTTTTGAGATCTGTGC 58.761 33.333 14.97 0.00 34.76 4.57
2248 3287 9.770503 CTCTTCAATATTGTTTTGAGATCTGTG 57.229 33.333 14.97 0.00 34.76 3.66
2249 3288 8.457261 GCTCTTCAATATTGTTTTGAGATCTGT 58.543 33.333 14.97 0.00 34.76 3.41
2250 3289 8.675504 AGCTCTTCAATATTGTTTTGAGATCTG 58.324 33.333 14.97 3.45 34.76 2.90
2251 3290 8.804912 AGCTCTTCAATATTGTTTTGAGATCT 57.195 30.769 14.97 0.00 34.76 2.75
2263 3302 9.018582 GCCCATCTATTTTAGCTCTTCAATATT 57.981 33.333 0.00 0.00 0.00 1.28
2264 3303 7.613411 GGCCCATCTATTTTAGCTCTTCAATAT 59.387 37.037 0.00 0.00 0.00 1.28
2265 3304 6.942576 GGCCCATCTATTTTAGCTCTTCAATA 59.057 38.462 0.00 0.00 0.00 1.90
2266 3305 5.772169 GGCCCATCTATTTTAGCTCTTCAAT 59.228 40.000 0.00 0.00 0.00 2.57
2267 3306 5.103940 AGGCCCATCTATTTTAGCTCTTCAA 60.104 40.000 0.00 0.00 0.00 2.69
2268 3307 4.413520 AGGCCCATCTATTTTAGCTCTTCA 59.586 41.667 0.00 0.00 0.00 3.02
2269 3308 4.759183 CAGGCCCATCTATTTTAGCTCTTC 59.241 45.833 0.00 0.00 0.00 2.87
2270 3309 4.446889 CCAGGCCCATCTATTTTAGCTCTT 60.447 45.833 0.00 0.00 0.00 2.85
2271 3310 3.073650 CCAGGCCCATCTATTTTAGCTCT 59.926 47.826 0.00 0.00 0.00 4.09
2272 3311 3.416156 CCAGGCCCATCTATTTTAGCTC 58.584 50.000 0.00 0.00 0.00 4.09
2273 3312 2.108952 CCCAGGCCCATCTATTTTAGCT 59.891 50.000 0.00 0.00 0.00 3.32
2274 3313 2.158460 ACCCAGGCCCATCTATTTTAGC 60.158 50.000 0.00 0.00 0.00 3.09
2275 3314 3.490348 CACCCAGGCCCATCTATTTTAG 58.510 50.000 0.00 0.00 0.00 1.85
2276 3315 2.424234 GCACCCAGGCCCATCTATTTTA 60.424 50.000 0.00 0.00 0.00 1.52
2277 3316 1.689258 GCACCCAGGCCCATCTATTTT 60.689 52.381 0.00 0.00 0.00 1.82
2278 3317 0.106015 GCACCCAGGCCCATCTATTT 60.106 55.000 0.00 0.00 0.00 1.40
2279 3318 1.288508 TGCACCCAGGCCCATCTATT 61.289 55.000 0.00 0.00 0.00 1.73
2280 3319 1.697394 TGCACCCAGGCCCATCTAT 60.697 57.895 0.00 0.00 0.00 1.98
2281 3320 2.286045 TGCACCCAGGCCCATCTA 60.286 61.111 0.00 0.00 0.00 1.98
2282 3321 3.736224 CTGCACCCAGGCCCATCT 61.736 66.667 0.00 0.00 35.38 2.90
2290 3329 1.108727 TTTTGAGCACCTGCACCCAG 61.109 55.000 0.00 0.00 45.16 4.45
2291 3330 0.685785 TTTTTGAGCACCTGCACCCA 60.686 50.000 0.00 0.00 45.16 4.51
2292 3331 2.123409 TTTTTGAGCACCTGCACCC 58.877 52.632 0.00 0.00 45.16 4.61
2313 3352 2.887568 GATGCCTCACGGACGCAG 60.888 66.667 0.00 0.00 35.66 5.18
2314 3353 4.794439 CGATGCCTCACGGACGCA 62.794 66.667 0.00 0.00 36.84 5.24
2320 3359 4.129737 ACGGTCCGATGCCTCACG 62.130 66.667 20.51 0.00 0.00 4.35
2321 3360 2.509336 CACGGTCCGATGCCTCAC 60.509 66.667 20.51 0.00 0.00 3.51
2322 3361 3.770040 CCACGGTCCGATGCCTCA 61.770 66.667 20.51 0.00 0.00 3.86
2327 3366 4.873129 CGAGGCCACGGTCCGATG 62.873 72.222 20.51 12.26 0.00 3.84
2336 3375 3.512516 GCATGGAAGCGAGGCCAC 61.513 66.667 5.01 0.00 36.92 5.01
2436 3481 3.793559 ACACCTATGCATTACCGACTTC 58.206 45.455 3.54 0.00 0.00 3.01
2442 3487 7.625828 AGAAGTTAAACACCTATGCATTACC 57.374 36.000 3.54 0.00 0.00 2.85
2509 3556 1.698532 AGCCCACCATTGCATGAAAAA 59.301 42.857 0.00 0.00 0.00 1.94
2510 3557 1.350071 AGCCCACCATTGCATGAAAA 58.650 45.000 0.00 0.00 0.00 2.29
2535 3582 8.767085 CGTGAACCTAGACAAAACACTTAAATA 58.233 33.333 0.00 0.00 0.00 1.40
2579 3628 4.897509 AGATGAGTGTGATGACTCCAAA 57.102 40.909 0.00 0.00 41.59 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.