Multiple sequence alignment - TraesCS2D01G178300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G178300 chr2D 100.000 2438 0 0 1 2438 122031632 122034069 0.000000e+00 4503.0
1 TraesCS2D01G178300 chr2B 89.757 1689 109 26 87 1762 175059352 175060989 0.000000e+00 2102.0
2 TraesCS2D01G178300 chr2B 78.293 410 45 21 2053 2421 175061245 175061651 8.770000e-55 224.0
3 TraesCS2D01G178300 chr2B 86.813 91 6 4 1917 2001 676211958 676211868 2.000000e-16 97.1
4 TraesCS2D01G178300 chr2B 86.813 91 6 5 1917 2001 739876590 739876500 2.000000e-16 97.1
5 TraesCS2D01G178300 chr2A 88.629 1539 95 48 516 2001 126471789 126473300 0.000000e+00 1799.0
6 TraesCS2D01G178300 chr2A 83.459 399 42 15 2058 2438 126473303 126473695 1.390000e-92 350.0
7 TraesCS2D01G178300 chr2A 94.608 204 9 2 330 532 126471289 126471491 5.060000e-82 315.0
8 TraesCS2D01G178300 chr2A 96.053 76 3 0 269 344 126470911 126470986 9.150000e-25 124.0
9 TraesCS2D01G178300 chr7B 90.110 91 3 4 1917 2001 3656045 3656135 1.980000e-21 113.0
10 TraesCS2D01G178300 chr6B 89.655 87 4 3 1920 2001 152337055 152337141 3.320000e-19 106.0
11 TraesCS2D01G178300 chr6B 89.655 87 4 3 1920 2001 691467308 691467222 3.320000e-19 106.0
12 TraesCS2D01G178300 chr3B 89.655 87 4 3 1920 2001 329494285 329494199 3.320000e-19 106.0
13 TraesCS2D01G178300 chr4A 91.667 72 2 2 1934 2001 689805979 689806050 2.000000e-16 97.1
14 TraesCS2D01G178300 chr4A 91.667 72 2 2 1934 2001 723944181 723944110 2.000000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G178300 chr2D 122031632 122034069 2437 False 4503 4503 100.00000 1 2438 1 chr2D.!!$F1 2437
1 TraesCS2D01G178300 chr2B 175059352 175061651 2299 False 1163 2102 84.02500 87 2421 2 chr2B.!!$F1 2334
2 TraesCS2D01G178300 chr2A 126470911 126473695 2784 False 647 1799 90.68725 269 2438 4 chr2A.!!$F1 2169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.247145 GAACGTAGCATCGCCGTTTG 60.247 55.0 4.87 0.0 44.04 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 2765 0.036732 CAACTAGCTCCTGGGCAACA 59.963 55.0 9.36 0.0 39.74 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.198406 TGTATTGAACGTAGCATCGCC 58.802 47.619 0.00 0.00 0.00 5.54
21 22 1.189446 GTATTGAACGTAGCATCGCCG 59.811 52.381 0.00 0.00 0.00 6.46
22 23 0.459585 ATTGAACGTAGCATCGCCGT 60.460 50.000 0.00 0.00 36.17 5.68
23 24 0.668096 TTGAACGTAGCATCGCCGTT 60.668 50.000 3.27 3.27 46.38 4.44
24 25 0.668096 TGAACGTAGCATCGCCGTTT 60.668 50.000 4.87 0.00 44.04 3.60
25 26 0.247145 GAACGTAGCATCGCCGTTTG 60.247 55.000 4.87 0.00 44.04 2.93
26 27 0.668096 AACGTAGCATCGCCGTTTGA 60.668 50.000 0.00 0.00 41.58 2.69
27 28 1.343821 CGTAGCATCGCCGTTTGAC 59.656 57.895 0.00 0.00 0.00 3.18
28 29 1.348538 CGTAGCATCGCCGTTTGACA 61.349 55.000 0.00 0.00 0.00 3.58
29 30 1.006832 GTAGCATCGCCGTTTGACAT 58.993 50.000 0.00 0.00 0.00 3.06
30 31 1.006086 TAGCATCGCCGTTTGACATG 58.994 50.000 0.00 0.00 0.00 3.21
31 32 0.955428 AGCATCGCCGTTTGACATGT 60.955 50.000 0.00 0.00 0.00 3.21
32 33 0.724549 GCATCGCCGTTTGACATGTA 59.275 50.000 0.00 0.00 0.00 2.29
33 34 1.529010 GCATCGCCGTTTGACATGTAC 60.529 52.381 0.00 0.00 0.00 2.90
34 35 1.999735 CATCGCCGTTTGACATGTACT 59.000 47.619 0.00 0.00 0.00 2.73
35 36 1.705256 TCGCCGTTTGACATGTACTC 58.295 50.000 0.00 0.00 0.00 2.59
36 37 0.719465 CGCCGTTTGACATGTACTCC 59.281 55.000 0.00 0.00 0.00 3.85
37 38 1.084289 GCCGTTTGACATGTACTCCC 58.916 55.000 0.00 0.00 0.00 4.30
38 39 1.338769 GCCGTTTGACATGTACTCCCT 60.339 52.381 0.00 0.00 0.00 4.20
39 40 2.093869 GCCGTTTGACATGTACTCCCTA 60.094 50.000 0.00 0.00 0.00 3.53
40 41 3.518590 CCGTTTGACATGTACTCCCTAC 58.481 50.000 0.00 0.00 0.00 3.18
41 42 3.176708 CGTTTGACATGTACTCCCTACG 58.823 50.000 0.00 0.00 0.00 3.51
42 43 3.366679 CGTTTGACATGTACTCCCTACGT 60.367 47.826 0.00 0.00 0.00 3.57
43 44 4.142622 CGTTTGACATGTACTCCCTACGTA 60.143 45.833 0.00 0.00 0.00 3.57
44 45 5.619757 CGTTTGACATGTACTCCCTACGTAA 60.620 44.000 0.00 0.00 0.00 3.18
45 46 5.981088 TTGACATGTACTCCCTACGTAAA 57.019 39.130 0.00 0.00 0.00 2.01
46 47 5.981088 TGACATGTACTCCCTACGTAAAA 57.019 39.130 0.00 0.00 0.00 1.52
47 48 6.343716 TGACATGTACTCCCTACGTAAAAA 57.656 37.500 0.00 0.00 0.00 1.94
70 71 5.825593 AAACCCTCTTCATAGTGAGAACA 57.174 39.130 0.00 0.00 32.44 3.18
71 72 5.413309 AACCCTCTTCATAGTGAGAACAG 57.587 43.478 0.00 0.00 32.44 3.16
72 73 4.678256 ACCCTCTTCATAGTGAGAACAGA 58.322 43.478 0.00 0.00 32.44 3.41
73 74 4.709397 ACCCTCTTCATAGTGAGAACAGAG 59.291 45.833 0.00 0.00 31.02 3.35
74 75 4.709397 CCCTCTTCATAGTGAGAACAGAGT 59.291 45.833 0.00 0.00 29.85 3.24
75 76 5.186797 CCCTCTTCATAGTGAGAACAGAGTT 59.813 44.000 0.00 0.00 29.85 3.01
76 77 6.098679 CCTCTTCATAGTGAGAACAGAGTTG 58.901 44.000 0.00 0.00 29.85 3.16
77 78 6.071672 CCTCTTCATAGTGAGAACAGAGTTGA 60.072 42.308 0.00 0.00 29.85 3.18
78 79 7.290110 TCTTCATAGTGAGAACAGAGTTGAA 57.710 36.000 0.00 0.00 0.00 2.69
79 80 7.901029 TCTTCATAGTGAGAACAGAGTTGAAT 58.099 34.615 0.00 0.00 0.00 2.57
80 81 9.025041 TCTTCATAGTGAGAACAGAGTTGAATA 57.975 33.333 0.00 0.00 0.00 1.75
81 82 9.814899 CTTCATAGTGAGAACAGAGTTGAATAT 57.185 33.333 0.00 0.00 0.00 1.28
220 222 1.437013 TACCTCCCACCCCAAAACCC 61.437 60.000 0.00 0.00 0.00 4.11
223 225 2.150014 CTCCCACCCCAAAACCCGAT 62.150 60.000 0.00 0.00 0.00 4.18
232 234 3.382227 CCCCAAAACCCGATAATGTTACC 59.618 47.826 0.00 0.00 0.00 2.85
234 236 5.438833 CCCAAAACCCGATAATGTTACCTA 58.561 41.667 0.00 0.00 0.00 3.08
251 253 1.229496 TAGAGAGGGGTGGCAAGCA 60.229 57.895 0.00 0.00 0.00 3.91
267 269 3.056322 GCAAGCAAACCCTCTTTGATGAT 60.056 43.478 0.00 0.00 0.00 2.45
350 670 6.767423 TCAGAAAGAAACTGACATGTCATGAA 59.233 34.615 28.00 6.21 39.10 2.57
422 742 8.455903 AAATCATTTGTATATGTCACCCTCTG 57.544 34.615 0.00 0.00 0.00 3.35
604 1239 1.531149 CTTTCGCAACGAGACCATGTT 59.469 47.619 0.00 0.00 37.14 2.71
605 1240 1.144969 TTCGCAACGAGACCATGTTC 58.855 50.000 0.00 0.00 37.14 3.18
606 1241 0.669318 TCGCAACGAGACCATGTTCC 60.669 55.000 0.00 0.00 0.00 3.62
607 1242 0.670546 CGCAACGAGACCATGTTCCT 60.671 55.000 0.00 0.00 0.00 3.36
608 1243 1.079503 GCAACGAGACCATGTTCCTC 58.920 55.000 0.00 0.00 0.00 3.71
609 1244 1.338200 GCAACGAGACCATGTTCCTCT 60.338 52.381 0.00 0.00 0.00 3.69
661 1296 1.480212 TTTCAGGGGAGCAGCGAGAA 61.480 55.000 0.00 0.00 0.00 2.87
663 1298 1.222936 CAGGGGAGCAGCGAGAAAT 59.777 57.895 0.00 0.00 0.00 2.17
664 1299 1.094073 CAGGGGAGCAGCGAGAAATG 61.094 60.000 0.00 0.00 0.00 2.32
666 1301 1.078143 GGGAGCAGCGAGAAATGGT 60.078 57.895 0.00 0.00 0.00 3.55
683 1320 3.957671 TGGTAACACGTCTCGCTATAG 57.042 47.619 0.00 0.00 46.17 1.31
687 1324 5.759763 TGGTAACACGTCTCGCTATAGATTA 59.240 40.000 3.21 0.00 46.17 1.75
692 1329 2.223066 CGTCTCGCTATAGATTAGGCCG 60.223 54.545 3.21 0.00 0.00 6.13
827 1494 0.252197 GAACCTACATCCAACGGCCT 59.748 55.000 0.00 0.00 0.00 5.19
895 1562 4.141251 GCCTTATAAGTCCTTCCATTCCCA 60.141 45.833 11.50 0.00 0.00 4.37
1209 1876 2.806745 GCTCAGCAACAGGTTCTACACA 60.807 50.000 0.00 0.00 0.00 3.72
1245 1912 0.548682 AGAGGCTCTGGTCCATGGTT 60.549 55.000 17.96 0.00 0.00 3.67
1254 1921 1.447314 GTCCATGGTTCCGTCCGAC 60.447 63.158 12.58 0.00 0.00 4.79
1392 2059 1.067669 CTCATCTCCAAGATCGCCGAA 59.932 52.381 0.00 0.00 31.32 4.30
1448 2115 1.822506 GTTGCCTAGGGTTCTGTTCC 58.177 55.000 11.72 0.00 0.00 3.62
1514 2184 3.974401 CGTACCAGCAATTTGTGTTGAAG 59.026 43.478 0.00 0.00 40.73 3.02
1690 2366 9.297037 GACCCCTAATGCATATACTGTTATTTT 57.703 33.333 0.00 0.00 0.00 1.82
1691 2367 9.077885 ACCCCTAATGCATATACTGTTATTTTG 57.922 33.333 0.00 0.00 0.00 2.44
1738 2414 3.599343 TGCCTGCTAGTCATGTTAACTG 58.401 45.455 7.22 3.19 0.00 3.16
1746 2488 6.591448 TGCTAGTCATGTTAACTGTGATTCTG 59.409 38.462 14.44 9.67 0.00 3.02
1765 2513 1.066645 TGTGCCTGCTAGTCATGTGAG 60.067 52.381 0.00 0.00 0.00 3.51
1768 2516 2.502947 TGCCTGCTAGTCATGTGAGATT 59.497 45.455 0.00 0.00 0.00 2.40
1771 2519 3.311871 CCTGCTAGTCATGTGAGATTTGC 59.688 47.826 0.00 0.00 0.00 3.68
1776 2524 2.486982 AGTCATGTGAGATTTGCACTGC 59.513 45.455 0.00 0.00 37.18 4.40
1777 2525 1.814394 TCATGTGAGATTTGCACTGCC 59.186 47.619 0.00 0.00 37.18 4.85
1778 2526 1.542472 CATGTGAGATTTGCACTGCCA 59.458 47.619 0.00 0.00 37.18 4.92
1780 2528 1.242076 GTGAGATTTGCACTGCCAGT 58.758 50.000 0.00 0.00 33.57 4.00
1783 2531 3.253188 GTGAGATTTGCACTGCCAGTTTA 59.747 43.478 0.00 0.00 33.57 2.01
1785 2533 5.123820 GTGAGATTTGCACTGCCAGTTTATA 59.876 40.000 0.00 0.00 33.57 0.98
1786 2534 5.887598 TGAGATTTGCACTGCCAGTTTATAT 59.112 36.000 0.00 0.00 0.00 0.86
1787 2535 6.038603 TGAGATTTGCACTGCCAGTTTATATC 59.961 38.462 0.00 0.00 0.00 1.63
1788 2536 5.887598 AGATTTGCACTGCCAGTTTATATCA 59.112 36.000 0.00 0.00 0.00 2.15
1789 2537 5.973899 TTTGCACTGCCAGTTTATATCAA 57.026 34.783 0.00 0.00 0.00 2.57
1790 2538 4.963276 TGCACTGCCAGTTTATATCAAC 57.037 40.909 0.00 0.00 0.00 3.18
1791 2539 4.588899 TGCACTGCCAGTTTATATCAACT 58.411 39.130 0.00 0.00 37.49 3.16
1793 2541 6.356556 TGCACTGCCAGTTTATATCAACTAT 58.643 36.000 0.00 0.00 35.10 2.12
1795 2543 7.134815 GCACTGCCAGTTTATATCAACTATTG 58.865 38.462 0.00 0.00 35.10 1.90
1811 2560 9.979578 ATCAACTATTGTTTATGCTTTGTTTGA 57.020 25.926 0.00 0.00 33.52 2.69
1819 2568 8.351495 TGTTTATGCTTTGTTTGATCTTTGTC 57.649 30.769 0.00 0.00 0.00 3.18
1821 2570 9.034544 GTTTATGCTTTGTTTGATCTTTGTCTT 57.965 29.630 0.00 0.00 0.00 3.01
1824 2573 7.985634 TGCTTTGTTTGATCTTTGTCTTTAC 57.014 32.000 0.00 0.00 0.00 2.01
1825 2574 7.771183 TGCTTTGTTTGATCTTTGTCTTTACT 58.229 30.769 0.00 0.00 0.00 2.24
1826 2575 7.701924 TGCTTTGTTTGATCTTTGTCTTTACTG 59.298 33.333 0.00 0.00 0.00 2.74
1827 2576 7.915397 GCTTTGTTTGATCTTTGTCTTTACTGA 59.085 33.333 0.00 0.00 0.00 3.41
1828 2577 9.956720 CTTTGTTTGATCTTTGTCTTTACTGAT 57.043 29.630 0.00 0.00 0.00 2.90
1835 2584 9.996554 TGATCTTTGTCTTTACTGATTTACTGA 57.003 29.630 0.00 0.00 0.00 3.41
1846 2595 9.555727 TTTACTGATTTACTGATACCTTATGCC 57.444 33.333 0.00 0.00 0.00 4.40
1847 2596 7.380423 ACTGATTTACTGATACCTTATGCCT 57.620 36.000 0.00 0.00 0.00 4.75
1848 2597 8.492415 ACTGATTTACTGATACCTTATGCCTA 57.508 34.615 0.00 0.00 0.00 3.93
1849 2598 9.105844 ACTGATTTACTGATACCTTATGCCTAT 57.894 33.333 0.00 0.00 0.00 2.57
1850 2599 9.950496 CTGATTTACTGATACCTTATGCCTATT 57.050 33.333 0.00 0.00 0.00 1.73
1851 2600 9.944376 TGATTTACTGATACCTTATGCCTATTC 57.056 33.333 0.00 0.00 0.00 1.75
1853 2602 9.950496 ATTTACTGATACCTTATGCCTATTCTG 57.050 33.333 0.00 0.00 0.00 3.02
1869 2618 6.018669 GCCTATTCTGTTACTTGTCATAGTGC 60.019 42.308 0.00 0.00 0.00 4.40
1876 2625 8.745590 TCTGTTACTTGTCATAGTGCATTACTA 58.254 33.333 0.00 0.00 45.50 1.82
1884 2633 7.564793 TGTCATAGTGCATTACTACAGGATTT 58.435 34.615 0.00 0.00 44.30 2.17
1885 2634 7.495606 TGTCATAGTGCATTACTACAGGATTTG 59.504 37.037 0.00 0.00 44.30 2.32
1886 2635 7.495934 GTCATAGTGCATTACTACAGGATTTGT 59.504 37.037 0.00 0.00 44.30 2.83
1887 2636 8.700973 TCATAGTGCATTACTACAGGATTTGTA 58.299 33.333 0.00 0.00 44.30 2.41
1908 2657 9.502091 TTTGTAGTATTTCTTGCAGTCATAGTT 57.498 29.630 0.00 0.00 0.00 2.24
1945 2695 8.959548 TGTATGATAGTGATTTGCTTGTTGATT 58.040 29.630 0.00 0.00 0.00 2.57
1957 2707 8.715191 TTTGCTTGTTGATTACATTGAAGTTT 57.285 26.923 0.00 0.00 36.44 2.66
2001 2754 9.542462 TTTGTAGCCATACTAGTTAACATGATC 57.458 33.333 8.61 0.00 32.75 2.92
2003 2756 8.360390 TGTAGCCATACTAGTTAACATGATCTG 58.640 37.037 8.61 0.00 32.75 2.90
2005 2758 5.934625 GCCATACTAGTTAACATGATCTGGG 59.065 44.000 8.61 1.10 0.00 4.45
2006 2759 6.464465 GCCATACTAGTTAACATGATCTGGGT 60.464 42.308 8.61 0.00 0.00 4.51
2007 2760 7.155328 CCATACTAGTTAACATGATCTGGGTC 58.845 42.308 8.61 0.00 0.00 4.46
2008 2761 5.615925 ACTAGTTAACATGATCTGGGTCC 57.384 43.478 8.61 0.00 0.00 4.46
2009 2762 5.281314 ACTAGTTAACATGATCTGGGTCCT 58.719 41.667 8.61 0.00 0.00 3.85
2010 2763 6.441222 ACTAGTTAACATGATCTGGGTCCTA 58.559 40.000 8.61 0.00 0.00 2.94
2011 2764 5.878406 AGTTAACATGATCTGGGTCCTAG 57.122 43.478 8.61 0.00 0.00 3.02
2012 2765 5.281314 AGTTAACATGATCTGGGTCCTAGT 58.719 41.667 8.61 0.00 0.00 2.57
2013 2766 5.129485 AGTTAACATGATCTGGGTCCTAGTG 59.871 44.000 8.61 0.00 0.00 2.74
2014 2767 3.121929 ACATGATCTGGGTCCTAGTGT 57.878 47.619 0.00 0.00 0.00 3.55
2015 2768 3.454858 ACATGATCTGGGTCCTAGTGTT 58.545 45.455 0.00 0.00 0.00 3.32
2016 2769 3.198635 ACATGATCTGGGTCCTAGTGTTG 59.801 47.826 0.00 0.00 0.00 3.33
2017 2770 1.555075 TGATCTGGGTCCTAGTGTTGC 59.445 52.381 1.65 0.00 0.00 4.17
2018 2771 0.912486 ATCTGGGTCCTAGTGTTGCC 59.088 55.000 1.65 0.00 0.00 4.52
2019 2772 1.198759 TCTGGGTCCTAGTGTTGCCC 61.199 60.000 1.65 0.00 39.73 5.36
2020 2773 1.462432 TGGGTCCTAGTGTTGCCCA 60.462 57.895 0.00 0.00 46.14 5.36
2021 2774 1.299976 GGGTCCTAGTGTTGCCCAG 59.700 63.158 0.00 0.00 39.13 4.45
2022 2775 1.299976 GGTCCTAGTGTTGCCCAGG 59.700 63.158 0.00 0.00 0.00 4.45
2023 2776 1.198759 GGTCCTAGTGTTGCCCAGGA 61.199 60.000 0.00 0.00 34.79 3.86
2024 2777 0.250513 GTCCTAGTGTTGCCCAGGAG 59.749 60.000 0.00 0.00 37.86 3.69
2025 2778 1.078143 CCTAGTGTTGCCCAGGAGC 60.078 63.158 0.00 0.00 0.00 4.70
2026 2779 1.557269 CCTAGTGTTGCCCAGGAGCT 61.557 60.000 0.00 0.00 0.00 4.09
2027 2780 1.195115 CTAGTGTTGCCCAGGAGCTA 58.805 55.000 0.00 0.00 0.00 3.32
2028 2781 1.137872 CTAGTGTTGCCCAGGAGCTAG 59.862 57.143 0.00 0.00 0.00 3.42
2029 2782 0.838122 AGTGTTGCCCAGGAGCTAGT 60.838 55.000 0.00 0.00 0.00 2.57
2030 2783 0.036875 GTGTTGCCCAGGAGCTAGTT 59.963 55.000 0.00 0.00 0.00 2.24
2031 2784 0.036732 TGTTGCCCAGGAGCTAGTTG 59.963 55.000 0.00 0.00 0.00 3.16
2032 2785 0.678048 GTTGCCCAGGAGCTAGTTGG 60.678 60.000 4.10 4.10 0.00 3.77
2034 2787 2.592308 CCCAGGAGCTAGTTGGGC 59.408 66.667 14.69 0.00 44.63 5.36
2035 2788 2.592308 CCAGGAGCTAGTTGGGCC 59.408 66.667 0.00 0.00 0.00 5.80
2036 2789 2.300967 CCAGGAGCTAGTTGGGCCA 61.301 63.158 0.00 0.00 0.00 5.36
2037 2790 1.222936 CAGGAGCTAGTTGGGCCAG 59.777 63.158 6.23 0.00 0.00 4.85
2038 2791 2.124529 GGAGCTAGTTGGGCCAGC 60.125 66.667 13.09 13.09 35.49 4.85
2039 2792 2.671070 GAGCTAGTTGGGCCAGCA 59.329 61.111 22.93 7.66 37.78 4.41
2040 2793 1.002134 GAGCTAGTTGGGCCAGCAA 60.002 57.895 22.93 2.54 37.78 3.91
2041 2794 0.609131 GAGCTAGTTGGGCCAGCAAA 60.609 55.000 22.93 9.09 37.78 3.68
2042 2795 0.040204 AGCTAGTTGGGCCAGCAAAT 59.960 50.000 22.93 7.29 37.78 2.32
2043 2796 0.897621 GCTAGTTGGGCCAGCAAATT 59.102 50.000 22.93 4.05 35.35 1.82
2044 2797 1.276138 GCTAGTTGGGCCAGCAAATTT 59.724 47.619 22.93 3.65 35.35 1.82
2045 2798 2.675032 GCTAGTTGGGCCAGCAAATTTC 60.675 50.000 22.93 1.66 35.35 2.17
2046 2799 0.686789 AGTTGGGCCAGCAAATTTCC 59.313 50.000 22.93 0.00 0.00 3.13
2047 2800 0.321564 GTTGGGCCAGCAAATTTCCC 60.322 55.000 16.19 5.17 37.49 3.97
2048 2801 0.473501 TTGGGCCAGCAAATTTCCCT 60.474 50.000 6.23 0.00 37.83 4.20
2049 2802 0.904394 TGGGCCAGCAAATTTCCCTC 60.904 55.000 0.00 0.00 37.83 4.30
2050 2803 0.615827 GGGCCAGCAAATTTCCCTCT 60.616 55.000 4.39 0.00 34.19 3.69
2051 2804 1.269958 GGCCAGCAAATTTCCCTCTT 58.730 50.000 0.00 0.00 0.00 2.85
2052 2805 1.066645 GGCCAGCAAATTTCCCTCTTG 60.067 52.381 0.00 0.00 0.00 3.02
2053 2806 1.620323 GCCAGCAAATTTCCCTCTTGT 59.380 47.619 0.00 0.00 0.00 3.16
2054 2807 2.825532 GCCAGCAAATTTCCCTCTTGTA 59.174 45.455 0.00 0.00 0.00 2.41
2055 2808 3.367395 GCCAGCAAATTTCCCTCTTGTAC 60.367 47.826 0.00 0.00 0.00 2.90
2056 2809 4.082125 CCAGCAAATTTCCCTCTTGTACT 58.918 43.478 0.00 0.00 0.00 2.73
2057 2810 5.253330 CCAGCAAATTTCCCTCTTGTACTA 58.747 41.667 0.00 0.00 0.00 1.82
2058 2811 5.355350 CCAGCAAATTTCCCTCTTGTACTAG 59.645 44.000 0.00 0.00 0.00 2.57
2059 2812 5.940470 CAGCAAATTTCCCTCTTGTACTAGT 59.060 40.000 0.00 0.00 0.00 2.57
2060 2813 7.103641 CAGCAAATTTCCCTCTTGTACTAGTA 58.896 38.462 0.00 0.00 0.00 1.82
2090 2843 6.655003 TCTTTGGAATTTCTAGCAGGTACTTG 59.345 38.462 0.00 0.00 34.60 3.16
2091 2844 4.261801 TGGAATTTCTAGCAGGTACTTGC 58.738 43.478 21.46 21.46 34.60 4.01
2092 2845 4.261801 GGAATTTCTAGCAGGTACTTGCA 58.738 43.478 29.01 15.30 34.60 4.08
2156 2917 9.840427 CAACCTCAATAGTTAAATAAACACCTG 57.160 33.333 0.00 0.00 40.83 4.00
2169 2930 4.489306 AAACACCTGGGAGTAAGCTATC 57.511 45.455 0.00 0.00 0.00 2.08
2177 2938 2.544069 GGGAGTAAGCTATCGTGCTGTC 60.544 54.545 0.00 0.91 43.24 3.51
2188 2949 0.308684 CGTGCTGTCATTGTTGTGCT 59.691 50.000 0.00 0.00 0.00 4.40
2189 2950 1.762419 GTGCTGTCATTGTTGTGCTG 58.238 50.000 0.00 0.00 0.00 4.41
2193 2954 2.223548 GCTGTCATTGTTGTGCTGTTGA 60.224 45.455 0.00 0.00 0.00 3.18
2202 2963 3.621268 TGTTGTGCTGTTGAGTGAAGTAC 59.379 43.478 0.00 0.00 0.00 2.73
2206 2967 3.491267 GTGCTGTTGAGTGAAGTACTGAC 59.509 47.826 0.00 0.00 40.53 3.51
2222 2983 5.948162 AGTACTGACATCCATTTGCATCTTT 59.052 36.000 0.00 0.00 0.00 2.52
2237 2998 3.350833 CATCTTTGCTGAAAGGGCTACT 58.649 45.455 0.00 0.00 39.36 2.57
2249 3010 2.784347 AGGGCTACTTGTTCTTTGAGC 58.216 47.619 0.00 0.00 0.00 4.26
2264 3025 6.506500 TCTTTGAGCAATCTTCCTTTGATC 57.493 37.500 0.00 0.00 39.36 2.92
2275 3036 4.223923 TCTTCCTTTGATCCCTTCTGTCTC 59.776 45.833 0.00 0.00 0.00 3.36
2282 3043 2.011122 TCCCTTCTGTCTCCTTCGTT 57.989 50.000 0.00 0.00 0.00 3.85
2296 3057 5.587043 TCTCCTTCGTTTTTGCTAGAACAAA 59.413 36.000 0.00 0.00 37.74 2.83
2367 3157 5.299279 CACTTGACCACCTGTTTTATCTGTT 59.701 40.000 0.00 0.00 0.00 3.16
2378 3168 7.284489 ACCTGTTTTATCTGTTGAGCTTTGTTA 59.716 33.333 0.00 0.00 0.00 2.41
2427 3221 6.480320 CCCAGAGTGCATTAGTACAAGATTAC 59.520 42.308 0.00 0.00 32.20 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.198406 GGCGATGCTACGTTCAATACA 58.802 47.619 0.00 0.00 35.59 2.29
1 2 1.189446 CGGCGATGCTACGTTCAATAC 59.811 52.381 0.00 0.00 35.59 1.89
2 3 1.202325 ACGGCGATGCTACGTTCAATA 60.202 47.619 16.62 0.00 37.61 1.90
3 4 0.459585 ACGGCGATGCTACGTTCAAT 60.460 50.000 16.62 0.00 37.61 2.57
4 5 0.668096 AACGGCGATGCTACGTTCAA 60.668 50.000 16.62 0.00 46.50 2.69
5 6 1.080366 AACGGCGATGCTACGTTCA 60.080 52.632 16.62 0.00 46.50 3.18
6 7 3.776656 AACGGCGATGCTACGTTC 58.223 55.556 16.62 0.00 46.50 3.95
8 9 1.080366 TCAAACGGCGATGCTACGT 60.080 52.632 16.62 0.00 43.43 3.57
9 10 1.343821 GTCAAACGGCGATGCTACG 59.656 57.895 16.62 0.00 0.00 3.51
10 11 1.006832 ATGTCAAACGGCGATGCTAC 58.993 50.000 16.62 8.00 0.00 3.58
11 12 1.006086 CATGTCAAACGGCGATGCTA 58.994 50.000 16.62 5.03 0.00 3.49
12 13 0.955428 ACATGTCAAACGGCGATGCT 60.955 50.000 16.62 0.00 0.00 3.79
13 14 0.724549 TACATGTCAAACGGCGATGC 59.275 50.000 16.62 9.08 0.00 3.91
14 15 1.999735 AGTACATGTCAAACGGCGATG 59.000 47.619 16.62 12.73 0.00 3.84
15 16 2.268298 GAGTACATGTCAAACGGCGAT 58.732 47.619 16.62 0.00 0.00 4.58
16 17 1.670674 GGAGTACATGTCAAACGGCGA 60.671 52.381 16.62 0.00 0.00 5.54
17 18 0.719465 GGAGTACATGTCAAACGGCG 59.281 55.000 4.80 4.80 0.00 6.46
18 19 1.084289 GGGAGTACATGTCAAACGGC 58.916 55.000 0.00 0.00 0.00 5.68
19 20 2.762535 AGGGAGTACATGTCAAACGG 57.237 50.000 0.00 0.00 0.00 4.44
20 21 3.176708 CGTAGGGAGTACATGTCAAACG 58.823 50.000 0.00 0.56 0.00 3.60
21 22 4.184079 ACGTAGGGAGTACATGTCAAAC 57.816 45.455 0.00 0.00 0.00 2.93
22 23 5.981088 TTACGTAGGGAGTACATGTCAAA 57.019 39.130 0.00 0.00 0.00 2.69
23 24 5.981088 TTTACGTAGGGAGTACATGTCAA 57.019 39.130 0.00 0.00 0.00 3.18
24 25 5.981088 TTTTACGTAGGGAGTACATGTCA 57.019 39.130 0.00 0.00 0.00 3.58
46 47 6.601332 TGTTCTCACTATGAAGAGGGTTTTT 58.399 36.000 0.00 0.00 32.76 1.94
47 48 6.043243 TCTGTTCTCACTATGAAGAGGGTTTT 59.957 38.462 0.00 0.00 36.07 2.43
48 49 5.544176 TCTGTTCTCACTATGAAGAGGGTTT 59.456 40.000 0.00 0.00 36.07 3.27
49 50 5.087323 TCTGTTCTCACTATGAAGAGGGTT 58.913 41.667 0.00 0.00 36.07 4.11
50 51 4.678256 TCTGTTCTCACTATGAAGAGGGT 58.322 43.478 0.00 0.00 36.07 4.34
51 52 4.709397 ACTCTGTTCTCACTATGAAGAGGG 59.291 45.833 9.11 0.00 40.03 4.30
52 53 5.913137 ACTCTGTTCTCACTATGAAGAGG 57.087 43.478 9.11 0.00 33.91 3.69
53 54 6.918626 TCAACTCTGTTCTCACTATGAAGAG 58.081 40.000 4.46 4.46 35.09 2.85
54 55 6.901081 TCAACTCTGTTCTCACTATGAAGA 57.099 37.500 0.00 0.00 0.00 2.87
55 56 9.814899 ATATTCAACTCTGTTCTCACTATGAAG 57.185 33.333 0.00 0.00 0.00 3.02
61 62 9.429359 CAAAGTATATTCAACTCTGTTCTCACT 57.571 33.333 0.00 0.00 0.00 3.41
62 63 9.209175 ACAAAGTATATTCAACTCTGTTCTCAC 57.791 33.333 0.00 0.00 22.96 3.51
63 64 9.424319 GACAAAGTATATTCAACTCTGTTCTCA 57.576 33.333 0.00 0.00 28.44 3.27
64 65 9.646427 AGACAAAGTATATTCAACTCTGTTCTC 57.354 33.333 0.00 0.00 28.44 2.87
198 200 2.493875 GGTTTTGGGGTGGGAGGTAAAT 60.494 50.000 0.00 0.00 0.00 1.40
220 222 5.047943 CACCCCTCTCTAGGTAACATTATCG 60.048 48.000 0.00 0.00 41.89 2.92
223 225 4.553678 CCACCCCTCTCTAGGTAACATTA 58.446 47.826 0.00 0.00 41.89 1.90
232 234 1.267574 TGCTTGCCACCCCTCTCTAG 61.268 60.000 0.00 0.00 0.00 2.43
234 236 1.719063 TTTGCTTGCCACCCCTCTCT 61.719 55.000 0.00 0.00 0.00 3.10
312 315 7.493645 CAGTTTCTTTCTGAGAAGGCAATTTTT 59.506 33.333 0.00 0.00 44.80 1.94
350 670 1.385528 GTTGGGTGGTGACGTTTTCT 58.614 50.000 0.00 0.00 0.00 2.52
422 742 4.298332 CTGTTAACTGGTGAATGTTTGCC 58.702 43.478 7.22 0.00 0.00 4.52
458 778 7.576861 TGTGATCGTATAGAACAGGAACATA 57.423 36.000 0.00 0.00 32.08 2.29
459 779 6.465439 TGTGATCGTATAGAACAGGAACAT 57.535 37.500 0.00 0.00 32.08 2.71
460 780 5.907866 TGTGATCGTATAGAACAGGAACA 57.092 39.130 0.00 0.00 32.08 3.18
614 1249 0.455633 GTCTCGTCGCTCGCCTTAAA 60.456 55.000 0.00 0.00 39.67 1.52
645 1280 1.094073 CATTTCTCGCTGCTCCCCTG 61.094 60.000 0.00 0.00 0.00 4.45
655 1290 2.334838 AGACGTGTTACCATTTCTCGC 58.665 47.619 0.00 0.00 0.00 5.03
661 1296 3.795623 ATAGCGAGACGTGTTACCATT 57.204 42.857 0.00 0.00 0.00 3.16
663 1298 3.534554 TCTATAGCGAGACGTGTTACCA 58.465 45.455 0.00 0.00 0.00 3.25
664 1299 4.745837 ATCTATAGCGAGACGTGTTACC 57.254 45.455 0.00 0.00 0.00 2.85
666 1301 5.106791 GCCTAATCTATAGCGAGACGTGTTA 60.107 44.000 0.00 0.00 0.00 2.41
692 1329 1.880027 CGGGTGCTATATTGGGCTTTC 59.120 52.381 0.00 0.00 0.00 2.62
723 1360 4.838152 CTGGACCGATGGCCCGTG 62.838 72.222 0.00 0.00 0.00 4.94
734 1371 0.105039 CTTCGGTGATAGGCTGGACC 59.895 60.000 0.00 0.00 39.61 4.46
827 1494 1.152387 ATGGGGGATTGGGTGGTTCA 61.152 55.000 0.00 0.00 0.00 3.18
868 1535 3.460825 TGGAAGGACTTATAAGGCTGGT 58.539 45.455 17.87 3.66 33.40 4.00
941 1608 3.752167 GGAGGAGAGGGGTCGGGA 61.752 72.222 0.00 0.00 0.00 5.14
1392 2059 1.026718 CGGCGGCCTTGATCTTCTTT 61.027 55.000 18.34 0.00 0.00 2.52
1514 2184 7.201530 CCAGGATAACAAACTAACGATGTCTTC 60.202 40.741 0.00 0.00 0.00 2.87
1666 2342 8.028938 GCAAAATAACAGTATATGCATTAGGGG 58.971 37.037 3.54 0.00 34.83 4.79
1691 2367 5.704515 AGAATCTTATAGTGATGCACCATGC 59.295 40.000 0.00 0.00 45.29 4.06
1738 2414 2.275318 GACTAGCAGGCACAGAATCAC 58.725 52.381 0.00 0.00 0.00 3.06
1746 2488 1.205655 TCTCACATGACTAGCAGGCAC 59.794 52.381 0.00 0.00 35.04 5.01
1765 2513 6.135290 TGATATAAACTGGCAGTGCAAATC 57.865 37.500 22.83 20.22 0.00 2.17
1768 2516 5.009631 AGTTGATATAAACTGGCAGTGCAA 58.990 37.500 22.83 14.83 38.95 4.08
1771 2519 8.213518 ACAATAGTTGATATAAACTGGCAGTG 57.786 34.615 22.83 7.69 40.58 3.66
1785 2533 9.979578 TCAAACAAAGCATAAACAATAGTTGAT 57.020 25.926 0.00 0.00 38.17 2.57
1786 2534 9.979578 ATCAAACAAAGCATAAACAATAGTTGA 57.020 25.926 0.00 0.00 38.17 3.18
1793 2541 8.715191 ACAAAGATCAAACAAAGCATAAACAA 57.285 26.923 0.00 0.00 0.00 2.83
1795 2543 8.579682 AGACAAAGATCAAACAAAGCATAAAC 57.420 30.769 0.00 0.00 0.00 2.01
1821 2570 8.934697 AGGCATAAGGTATCAGTAAATCAGTAA 58.065 33.333 0.00 0.00 0.00 2.24
1823 2572 7.380423 AGGCATAAGGTATCAGTAAATCAGT 57.620 36.000 0.00 0.00 0.00 3.41
1824 2573 9.950496 AATAGGCATAAGGTATCAGTAAATCAG 57.050 33.333 0.00 0.00 0.00 2.90
1825 2574 9.944376 GAATAGGCATAAGGTATCAGTAAATCA 57.056 33.333 0.00 0.00 0.00 2.57
1827 2576 9.950496 CAGAATAGGCATAAGGTATCAGTAAAT 57.050 33.333 0.00 0.00 0.00 1.40
1828 2577 8.934697 ACAGAATAGGCATAAGGTATCAGTAAA 58.065 33.333 0.00 0.00 0.00 2.01
1829 2578 8.492415 ACAGAATAGGCATAAGGTATCAGTAA 57.508 34.615 0.00 0.00 0.00 2.24
1830 2579 8.492415 AACAGAATAGGCATAAGGTATCAGTA 57.508 34.615 0.00 0.00 0.00 2.74
1831 2580 7.380423 AACAGAATAGGCATAAGGTATCAGT 57.620 36.000 0.00 0.00 0.00 3.41
1832 2581 8.589338 AGTAACAGAATAGGCATAAGGTATCAG 58.411 37.037 0.00 0.00 0.00 2.90
1833 2582 8.492415 AGTAACAGAATAGGCATAAGGTATCA 57.508 34.615 0.00 0.00 0.00 2.15
1834 2583 9.209175 CAAGTAACAGAATAGGCATAAGGTATC 57.791 37.037 0.00 0.00 0.00 2.24
1835 2584 8.714906 ACAAGTAACAGAATAGGCATAAGGTAT 58.285 33.333 0.00 0.00 0.00 2.73
1836 2585 8.086143 ACAAGTAACAGAATAGGCATAAGGTA 57.914 34.615 0.00 0.00 0.00 3.08
1837 2586 6.958767 ACAAGTAACAGAATAGGCATAAGGT 58.041 36.000 0.00 0.00 0.00 3.50
1838 2587 7.047891 TGACAAGTAACAGAATAGGCATAAGG 58.952 38.462 0.00 0.00 0.00 2.69
1839 2588 8.668510 ATGACAAGTAACAGAATAGGCATAAG 57.331 34.615 0.00 0.00 0.00 1.73
1840 2589 9.764363 CTATGACAAGTAACAGAATAGGCATAA 57.236 33.333 0.00 0.00 0.00 1.90
1841 2590 8.924303 ACTATGACAAGTAACAGAATAGGCATA 58.076 33.333 0.00 0.00 0.00 3.14
1842 2591 7.712639 CACTATGACAAGTAACAGAATAGGCAT 59.287 37.037 0.00 0.00 0.00 4.40
1843 2592 7.041721 CACTATGACAAGTAACAGAATAGGCA 58.958 38.462 0.00 0.00 0.00 4.75
1844 2593 6.018669 GCACTATGACAAGTAACAGAATAGGC 60.019 42.308 0.00 0.00 0.00 3.93
1845 2594 7.041721 TGCACTATGACAAGTAACAGAATAGG 58.958 38.462 0.00 0.00 0.00 2.57
1846 2595 8.654230 ATGCACTATGACAAGTAACAGAATAG 57.346 34.615 0.00 0.00 0.00 1.73
1848 2597 7.928307 AATGCACTATGACAAGTAACAGAAT 57.072 32.000 0.00 0.00 0.00 2.40
1849 2598 8.094548 AGTAATGCACTATGACAAGTAACAGAA 58.905 33.333 0.00 0.00 34.98 3.02
1850 2599 7.611770 AGTAATGCACTATGACAAGTAACAGA 58.388 34.615 0.00 0.00 34.98 3.41
1851 2600 7.834068 AGTAATGCACTATGACAAGTAACAG 57.166 36.000 0.00 0.00 34.98 3.16
1852 2601 8.308207 TGTAGTAATGCACTATGACAAGTAACA 58.692 33.333 0.00 0.00 41.77 2.41
1853 2602 8.697846 TGTAGTAATGCACTATGACAAGTAAC 57.302 34.615 0.00 0.00 41.77 2.50
1876 2625 6.942576 ACTGCAAGAAATACTACAAATCCTGT 59.057 34.615 0.00 0.00 38.83 4.00
1913 2662 9.961265 CAAGCAAATCACTATCATACAATTCAT 57.039 29.630 0.00 0.00 0.00 2.57
1925 2674 9.577110 CAATGTAATCAACAAGCAAATCACTAT 57.423 29.630 0.00 0.00 42.70 2.12
1926 2675 8.791675 TCAATGTAATCAACAAGCAAATCACTA 58.208 29.630 0.00 0.00 42.70 2.74
1928 2677 7.872163 TCAATGTAATCAACAAGCAAATCAC 57.128 32.000 0.00 0.00 42.70 3.06
1945 2695 9.653287 CCTCTTACAGACATAAACTTCAATGTA 57.347 33.333 0.00 0.00 36.48 2.29
1957 2707 6.872020 GCTACAAACAACCTCTTACAGACATA 59.128 38.462 0.00 0.00 0.00 2.29
2001 2754 1.299976 GGGCAACACTAGGACCCAG 59.700 63.158 0.00 0.00 40.52 4.45
2003 2756 1.299976 CTGGGCAACACTAGGACCC 59.700 63.158 0.00 0.00 41.24 4.46
2005 2758 0.250513 CTCCTGGGCAACACTAGGAC 59.749 60.000 0.00 0.00 35.57 3.85
2006 2759 1.553690 GCTCCTGGGCAACACTAGGA 61.554 60.000 0.00 0.00 37.72 2.94
2007 2760 1.078143 GCTCCTGGGCAACACTAGG 60.078 63.158 0.00 0.00 39.74 3.02
2008 2761 1.137872 CTAGCTCCTGGGCAACACTAG 59.862 57.143 9.36 0.00 39.74 2.57
2009 2762 1.195115 CTAGCTCCTGGGCAACACTA 58.805 55.000 9.36 0.00 39.74 2.74
2010 2763 0.838122 ACTAGCTCCTGGGCAACACT 60.838 55.000 9.36 0.00 39.74 3.55
2011 2764 0.036875 AACTAGCTCCTGGGCAACAC 59.963 55.000 9.36 0.00 39.74 3.32
2012 2765 0.036732 CAACTAGCTCCTGGGCAACA 59.963 55.000 9.36 0.00 39.74 3.33
2013 2766 0.678048 CCAACTAGCTCCTGGGCAAC 60.678 60.000 9.36 0.00 34.17 4.17
2014 2767 1.685224 CCAACTAGCTCCTGGGCAA 59.315 57.895 9.36 0.00 34.17 4.52
2015 2768 2.300967 CCCAACTAGCTCCTGGGCA 61.301 63.158 13.26 0.00 43.35 5.36
2016 2769 2.592308 CCCAACTAGCTCCTGGGC 59.408 66.667 13.26 0.00 43.35 5.36
2018 2771 2.262774 CTGGCCCAACTAGCTCCTGG 62.263 65.000 0.00 0.00 0.00 4.45
2019 2772 1.222936 CTGGCCCAACTAGCTCCTG 59.777 63.158 0.00 0.00 0.00 3.86
2020 2773 3.732938 CTGGCCCAACTAGCTCCT 58.267 61.111 0.00 0.00 0.00 3.69
2025 2778 2.094026 GGAAATTTGCTGGCCCAACTAG 60.094 50.000 0.00 0.00 0.00 2.57
2026 2779 1.899142 GGAAATTTGCTGGCCCAACTA 59.101 47.619 0.00 0.00 0.00 2.24
2027 2780 0.686789 GGAAATTTGCTGGCCCAACT 59.313 50.000 0.00 0.00 0.00 3.16
2028 2781 0.321564 GGGAAATTTGCTGGCCCAAC 60.322 55.000 9.70 0.00 38.68 3.77
2029 2782 0.473501 AGGGAAATTTGCTGGCCCAA 60.474 50.000 9.70 0.00 41.34 4.12
2030 2783 0.904394 GAGGGAAATTTGCTGGCCCA 60.904 55.000 9.70 0.00 41.34 5.36
2031 2784 0.615827 AGAGGGAAATTTGCTGGCCC 60.616 55.000 9.70 6.71 39.12 5.80
2032 2785 1.066645 CAAGAGGGAAATTTGCTGGCC 60.067 52.381 9.70 0.00 0.00 5.36
2033 2786 1.620323 ACAAGAGGGAAATTTGCTGGC 59.380 47.619 9.70 0.00 0.00 4.85
2034 2787 4.082125 AGTACAAGAGGGAAATTTGCTGG 58.918 43.478 9.70 0.00 0.00 4.85
2035 2788 5.940470 ACTAGTACAAGAGGGAAATTTGCTG 59.060 40.000 9.70 2.63 0.00 4.41
2036 2789 6.128138 ACTAGTACAAGAGGGAAATTTGCT 57.872 37.500 9.70 0.00 0.00 3.91
2037 2790 8.507524 AATACTAGTACAAGAGGGAAATTTGC 57.492 34.615 4.31 0.22 0.00 3.68
2045 2798 9.765795 CCAAAGATAAATACTAGTACAAGAGGG 57.234 37.037 4.31 0.00 0.00 4.30
2059 2812 9.920946 ACCTGCTAGAAATTCCAAAGATAAATA 57.079 29.630 0.00 0.00 0.00 1.40
2060 2813 8.829373 ACCTGCTAGAAATTCCAAAGATAAAT 57.171 30.769 0.00 0.00 0.00 1.40
2076 2829 3.679917 GCAATCTGCAAGTACCTGCTAGA 60.680 47.826 17.05 16.44 44.26 2.43
2131 2892 9.020731 CCAGGTGTTTATTTAACTATTGAGGTT 57.979 33.333 0.00 0.00 37.64 3.50
2138 2899 9.901172 CTTACTCCCAGGTGTTTATTTAACTAT 57.099 33.333 0.00 0.00 37.64 2.12
2139 2900 7.825761 GCTTACTCCCAGGTGTTTATTTAACTA 59.174 37.037 0.00 0.00 37.64 2.24
2156 2917 1.409427 ACAGCACGATAGCTTACTCCC 59.591 52.381 0.00 0.00 43.70 4.30
2169 2930 0.308684 AGCACAACAATGACAGCACG 59.691 50.000 0.00 0.00 0.00 5.34
2177 2938 3.696281 TCACTCAACAGCACAACAATG 57.304 42.857 0.00 0.00 0.00 2.82
2188 2949 4.343814 TGGATGTCAGTACTTCACTCAACA 59.656 41.667 0.00 0.00 34.26 3.33
2189 2950 4.883083 TGGATGTCAGTACTTCACTCAAC 58.117 43.478 0.00 0.00 34.26 3.18
2193 2954 4.697352 GCAAATGGATGTCAGTACTTCACT 59.303 41.667 0.00 0.00 38.32 3.41
2222 2983 2.106511 AGAACAAGTAGCCCTTTCAGCA 59.893 45.455 0.00 0.00 0.00 4.41
2230 2991 2.504367 TGCTCAAAGAACAAGTAGCCC 58.496 47.619 0.00 0.00 0.00 5.19
2237 2998 6.096705 TCAAAGGAAGATTGCTCAAAGAACAA 59.903 34.615 0.00 0.00 0.00 2.83
2249 3010 5.259632 ACAGAAGGGATCAAAGGAAGATTG 58.740 41.667 0.00 0.00 0.00 2.67
2264 3025 2.841442 AAACGAAGGAGACAGAAGGG 57.159 50.000 0.00 0.00 0.00 3.95
2275 3036 5.816919 TCTTTGTTCTAGCAAAAACGAAGG 58.183 37.500 16.39 4.76 42.96 3.46
2312 3073 6.686679 GCAAGCAAAAACAAATAAAACACTCC 59.313 34.615 0.00 0.00 0.00 3.85
2314 3075 7.094848 ACAGCAAGCAAAAACAAATAAAACACT 60.095 29.630 0.00 0.00 0.00 3.55
2321 3082 3.559242 GCCACAGCAAGCAAAAACAAATA 59.441 39.130 0.00 0.00 39.53 1.40
2346 3130 5.441500 TCAACAGATAAAACAGGTGGTCAA 58.558 37.500 0.00 0.00 0.00 3.18
2353 3143 6.076981 ACAAAGCTCAACAGATAAAACAGG 57.923 37.500 0.00 0.00 0.00 4.00
2367 3157 6.514947 ACAAATGCTTGAATAACAAAGCTCA 58.485 32.000 8.66 0.00 38.08 4.26
2378 3168 8.034804 GGGAAATACAGTAACAAATGCTTGAAT 58.965 33.333 0.00 0.00 36.33 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.