Multiple sequence alignment - TraesCS2D01G178100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G178100 chr2D 100.000 5411 0 0 1 5411 121707298 121701888 0.000000e+00 9993.0
1 TraesCS2D01G178100 chr2D 97.487 199 5 0 1 199 449577973 449578171 1.870000e-89 340.0
2 TraesCS2D01G178100 chr2D 97.500 80 2 0 120 199 121722781 121722702 2.630000e-28 137.0
3 TraesCS2D01G178100 chr2D 91.753 97 2 5 2109 2201 165009327 165009233 4.400000e-26 130.0
4 TraesCS2D01G178100 chr2D 94.118 85 1 3 2117 2197 366499384 366499468 5.690000e-25 126.0
5 TraesCS2D01G178100 chr2D 100.000 29 0 0 4040 4068 33904394 33904366 3.000000e-03 54.7
6 TraesCS2D01G178100 chr2A 91.294 3285 165 56 2196 5411 125902344 125899112 0.000000e+00 4370.0
7 TraesCS2D01G178100 chr2A 92.099 810 36 12 741 1525 125903682 125902876 0.000000e+00 1116.0
8 TraesCS2D01G178100 chr2A 90.323 837 63 6 4576 5407 125899084 125898261 0.000000e+00 1081.0
9 TraesCS2D01G178100 chr2A 91.745 424 33 2 4738 5160 125796925 125796503 6.040000e-164 588.0
10 TraesCS2D01G178100 chr2A 89.709 447 31 5 4576 5018 125898229 125897794 1.700000e-154 556.0
11 TraesCS2D01G178100 chr2A 87.627 493 33 12 227 707 125904153 125903677 1.020000e-151 547.0
12 TraesCS2D01G178100 chr2A 90.529 359 34 0 5049 5407 125897795 125897437 4.900000e-130 475.0
13 TraesCS2D01G178100 chr2A 92.254 284 21 1 4817 5099 125890466 125890183 8.440000e-108 401.0
14 TraesCS2D01G178100 chr2A 90.604 298 16 2 1551 1836 125902886 125902589 8.500000e-103 385.0
15 TraesCS2D01G178100 chr2A 88.158 304 36 0 5104 5407 125879986 125879683 3.980000e-96 363.0
16 TraesCS2D01G178100 chr2A 90.909 242 20 2 1879 2118 125902584 125902343 1.880000e-84 324.0
17 TraesCS2D01G178100 chr2A 89.243 251 12 3 4576 4822 125897405 125897166 3.170000e-77 300.0
18 TraesCS2D01G178100 chr2A 87.795 254 14 7 4576 4824 125879651 125879410 1.150000e-71 281.0
19 TraesCS2D01G178100 chr2A 92.386 197 10 3 1 193 696217584 696217779 5.340000e-70 276.0
20 TraesCS2D01G178100 chr2A 76.423 123 19 10 2505 2622 68880480 68880597 2.110000e-04 58.4
21 TraesCS2D01G178100 chr2B 92.053 2655 133 36 2791 5411 174829793 174827183 0.000000e+00 3663.0
22 TraesCS2D01G178100 chr2B 90.661 1906 103 33 228 2118 174832115 174830270 0.000000e+00 2464.0
23 TraesCS2D01G178100 chr2B 94.805 462 18 4 2196 2655 174830271 174829814 0.000000e+00 715.0
24 TraesCS2D01G178100 chr7A 97.990 199 4 0 1 199 566900820 566900622 4.010000e-91 346.0
25 TraesCS2D01G178100 chr7A 95.980 199 8 0 1 199 31013139 31012941 1.880000e-84 324.0
26 TraesCS2D01G178100 chr7A 78.509 456 76 19 3759 4203 119702658 119702214 4.130000e-71 279.0
27 TraesCS2D01G178100 chr5D 97.487 199 5 0 1 199 546359278 546359080 1.870000e-89 340.0
28 TraesCS2D01G178100 chr5D 86.525 141 15 3 3745 3882 39347385 39347246 9.390000e-33 152.0
29 TraesCS2D01G178100 chr5A 97.500 200 4 1 1 199 116781493 116781294 1.870000e-89 340.0
30 TraesCS2D01G178100 chr5A 97.000 200 5 1 1 199 116699509 116699310 8.680000e-88 335.0
31 TraesCS2D01G178100 chr6A 96.985 199 6 0 1 199 286525127 286525325 8.680000e-88 335.0
32 TraesCS2D01G178100 chr6A 78.422 431 80 12 3745 4170 570382535 570382113 8.930000e-68 268.0
33 TraesCS2D01G178100 chr6A 78.171 339 55 13 3759 4089 469432323 469431996 1.190000e-46 198.0
34 TraesCS2D01G178100 chr1D 96.985 199 6 0 1 199 342141378 342141180 8.680000e-88 335.0
35 TraesCS2D01G178100 chr1D 96.482 199 6 1 2 199 458294662 458294860 1.450000e-85 327.0
36 TraesCS2D01G178100 chr1D 94.937 79 4 0 121 199 342160536 342160458 2.050000e-24 124.0
37 TraesCS2D01G178100 chr1D 91.489 94 2 4 2117 2205 476397662 476397754 2.050000e-24 124.0
38 TraesCS2D01G178100 chr1D 90.526 95 5 2 2107 2197 320727775 320727869 7.360000e-24 122.0
39 TraesCS2D01G178100 chr7D 78.389 509 90 18 3759 4257 115048459 115047961 4.070000e-81 313.0
40 TraesCS2D01G178100 chr7D 82.042 284 40 8 1150 1423 577843556 577843838 1.170000e-56 231.0
41 TraesCS2D01G178100 chr7D 86.550 171 19 3 3759 3927 528080137 528080305 9.260000e-43 185.0
42 TraesCS2D01G178100 chr7D 90.426 94 5 3 2108 2197 34845548 34845641 2.650000e-23 121.0
43 TraesCS2D01G178100 chr7B 78.681 455 77 17 3759 4203 74598501 74598057 8.870000e-73 285.0
44 TraesCS2D01G178100 chr7B 81.311 305 51 6 1132 1431 641255524 641255827 5.410000e-60 243.0
45 TraesCS2D01G178100 chr7B 82.041 245 39 4 3759 4001 565577311 565577552 2.560000e-48 204.0
46 TraesCS2D01G178100 chr7B 91.667 48 4 0 2591 2638 180041005 180040958 3.500000e-07 67.6
47 TraesCS2D01G178100 chrUn 91.584 202 14 3 1 199 79340372 79340573 5.340000e-70 276.0
48 TraesCS2D01G178100 chrUn 92.857 42 3 0 2597 2638 270733775 270733734 1.630000e-05 62.1
49 TraesCS2D01G178100 chrUn 88.235 51 6 0 2588 2638 282197154 282197204 1.630000e-05 62.1
50 TraesCS2D01G178100 chr3B 89.055 201 17 4 1 199 451816664 451816467 1.510000e-60 244.0
51 TraesCS2D01G178100 chr3B 82.065 184 28 5 5206 5386 23709192 23709373 9.390000e-33 152.0
52 TraesCS2D01G178100 chr3B 80.460 87 17 0 2531 2617 566161997 566162083 3.500000e-07 67.6
53 TraesCS2D01G178100 chr3B 96.970 33 1 0 3759 3791 751486301 751486269 7.570000e-04 56.5
54 TraesCS2D01G178100 chr3A 77.232 448 63 28 4950 5389 20232397 20232813 5.450000e-55 226.0
55 TraesCS2D01G178100 chr3A 81.609 87 16 0 2531 2617 571791068 571791154 7.520000e-09 73.1
56 TraesCS2D01G178100 chr6D 78.529 340 52 15 3759 4089 330157604 330157277 2.560000e-48 204.0
57 TraesCS2D01G178100 chr6D 91.489 94 4 3 2108 2197 27308706 27308613 5.690000e-25 126.0
58 TraesCS2D01G178100 chr4D 93.333 90 1 4 2117 2202 475876795 475876883 1.580000e-25 128.0
59 TraesCS2D01G178100 chr4D 100.000 30 0 0 197 226 498028053 498028024 7.570000e-04 56.5
60 TraesCS2D01G178100 chr5B 87.963 108 6 5 2095 2197 530041194 530041089 2.650000e-23 121.0
61 TraesCS2D01G178100 chr5B 96.970 33 1 0 3759 3791 679342524 679342492 7.570000e-04 56.5
62 TraesCS2D01G178100 chr4A 88.462 104 6 5 2114 2211 35625787 35625890 2.650000e-23 121.0
63 TraesCS2D01G178100 chr3D 81.609 87 16 0 2531 2617 433415034 433415120 7.520000e-09 73.1
64 TraesCS2D01G178100 chr3D 100.000 30 0 0 197 226 581572072 581572101 7.570000e-04 56.5
65 TraesCS2D01G178100 chr1B 100.000 30 0 0 3759 3788 389782806 389782835 7.570000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G178100 chr2D 121701888 121707298 5410 True 9993.000000 9993 100.000000 1 5411 1 chr2D.!!$R2 5410
1 TraesCS2D01G178100 chr2A 125897166 125904153 6987 True 1017.111111 4370 90.259667 227 5411 9 chr2A.!!$R4 5184
2 TraesCS2D01G178100 chr2A 125879410 125879986 576 True 322.000000 363 87.976500 4576 5407 2 chr2A.!!$R3 831
3 TraesCS2D01G178100 chr2B 174827183 174832115 4932 True 2280.666667 3663 92.506333 228 5411 3 chr2B.!!$R1 5183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.034089 ACCAAGCCATTGCCTCTACC 60.034 55.000 0.00 0.00 38.69 3.18 F
49 50 0.034186 CCAAGCCATTGCCTCTACCA 60.034 55.000 0.00 0.00 38.69 3.25 F
53 54 0.035056 GCCATTGCCTCTACCACAGT 60.035 55.000 0.00 0.00 0.00 3.55 F
78 79 0.247695 GCTTGTCGGCGCAATCTTAC 60.248 55.000 10.83 1.85 0.00 2.34 F
494 495 0.251073 GGTAGGTAGGAAAAGGCGCA 59.749 55.000 10.83 0.00 0.00 6.09 F
1448 1490 1.004918 CCACGTGTCCTCCTCAACC 60.005 63.158 15.65 0.00 0.00 3.77 F
2060 2124 1.039856 GTGTTCCCAACATGGCTTGT 58.960 50.000 0.00 0.00 44.35 3.16 F
2708 2790 0.035820 GTCGACTTGGTTATGCCCCA 60.036 55.000 8.70 0.00 36.04 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1565 0.248907 CCGTCCGCATACCACTACTG 60.249 60.000 0.00 0.00 0.00 2.74 R
1785 1843 0.804989 GGAGAATTCCTGCAACGGTG 59.195 55.000 0.00 0.00 40.58 4.94 R
1954 2015 4.377897 TCCTGAAAGAAACCTCGAACTTC 58.622 43.478 0.00 0.00 34.07 3.01 R
1972 2034 7.106239 ACTGTGTAACCAAGAATATTCTCCTG 58.894 38.462 18.19 13.26 33.43 3.86 R
2298 2366 0.788391 GCGCCGAGATATTTTACGGG 59.212 55.000 0.00 0.00 44.61 5.28 R
2692 2774 0.746659 GCATGGGGCATAACCAAGTC 59.253 55.000 0.00 0.00 42.17 3.01 R
3147 3245 1.079750 GTTCTGACCAGCGACCTCC 60.080 63.158 0.00 0.00 0.00 4.30 R
4663 5676 1.611491 ACATGCGACCAAATTTCCGTT 59.389 42.857 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.844577 CTTCCAAGGATCAACTTGCAG 57.155 47.619 6.27 2.12 44.98 4.41
21 22 3.415212 CTTCCAAGGATCAACTTGCAGA 58.585 45.455 6.27 0.00 44.98 4.26
22 23 2.783135 TCCAAGGATCAACTTGCAGAC 58.217 47.619 6.27 0.00 44.98 3.51
23 24 2.106338 TCCAAGGATCAACTTGCAGACA 59.894 45.455 6.27 0.00 44.98 3.41
24 25 3.087031 CCAAGGATCAACTTGCAGACAT 58.913 45.455 6.27 0.00 44.98 3.06
25 26 3.128242 CCAAGGATCAACTTGCAGACATC 59.872 47.826 6.27 0.00 44.98 3.06
26 27 3.996921 AGGATCAACTTGCAGACATCT 57.003 42.857 0.00 0.00 0.00 2.90
27 28 4.298103 AGGATCAACTTGCAGACATCTT 57.702 40.909 0.00 0.00 0.00 2.40
28 29 4.260170 AGGATCAACTTGCAGACATCTTC 58.740 43.478 0.00 0.00 0.00 2.87
29 30 4.005650 GGATCAACTTGCAGACATCTTCA 58.994 43.478 0.00 0.00 0.00 3.02
30 31 4.142730 GGATCAACTTGCAGACATCTTCAC 60.143 45.833 0.00 0.00 0.00 3.18
31 32 3.141398 TCAACTTGCAGACATCTTCACC 58.859 45.455 0.00 0.00 0.00 4.02
32 33 2.880268 CAACTTGCAGACATCTTCACCA 59.120 45.455 0.00 0.00 0.00 4.17
33 34 3.213206 ACTTGCAGACATCTTCACCAA 57.787 42.857 0.00 0.00 0.00 3.67
34 35 3.144506 ACTTGCAGACATCTTCACCAAG 58.855 45.455 0.00 0.00 39.06 3.61
35 36 1.527034 TGCAGACATCTTCACCAAGC 58.473 50.000 0.00 0.00 0.00 4.01
36 37 0.807496 GCAGACATCTTCACCAAGCC 59.193 55.000 0.00 0.00 0.00 4.35
37 38 1.883638 GCAGACATCTTCACCAAGCCA 60.884 52.381 0.00 0.00 0.00 4.75
38 39 2.719739 CAGACATCTTCACCAAGCCAT 58.280 47.619 0.00 0.00 0.00 4.40
39 40 3.087031 CAGACATCTTCACCAAGCCATT 58.913 45.455 0.00 0.00 0.00 3.16
40 41 3.087031 AGACATCTTCACCAAGCCATTG 58.913 45.455 0.00 0.00 36.09 2.82
41 42 1.547372 ACATCTTCACCAAGCCATTGC 59.453 47.619 0.00 0.00 34.91 3.56
42 43 1.134907 CATCTTCACCAAGCCATTGCC 60.135 52.381 0.00 0.00 38.69 4.52
43 44 0.112995 TCTTCACCAAGCCATTGCCT 59.887 50.000 0.00 0.00 38.69 4.75
44 45 0.529378 CTTCACCAAGCCATTGCCTC 59.471 55.000 0.00 0.00 38.69 4.70
45 46 0.112995 TTCACCAAGCCATTGCCTCT 59.887 50.000 0.00 0.00 38.69 3.69
46 47 0.991146 TCACCAAGCCATTGCCTCTA 59.009 50.000 0.00 0.00 38.69 2.43
47 48 1.098050 CACCAAGCCATTGCCTCTAC 58.902 55.000 0.00 0.00 38.69 2.59
48 49 0.034089 ACCAAGCCATTGCCTCTACC 60.034 55.000 0.00 0.00 38.69 3.18
49 50 0.034186 CCAAGCCATTGCCTCTACCA 60.034 55.000 0.00 0.00 38.69 3.25
50 51 1.098050 CAAGCCATTGCCTCTACCAC 58.902 55.000 0.00 0.00 38.69 4.16
51 52 0.698238 AAGCCATTGCCTCTACCACA 59.302 50.000 0.00 0.00 38.69 4.17
52 53 0.254178 AGCCATTGCCTCTACCACAG 59.746 55.000 0.00 0.00 38.69 3.66
53 54 0.035056 GCCATTGCCTCTACCACAGT 60.035 55.000 0.00 0.00 0.00 3.55
54 55 1.614317 GCCATTGCCTCTACCACAGTT 60.614 52.381 0.00 0.00 0.00 3.16
55 56 2.795329 CCATTGCCTCTACCACAGTTT 58.205 47.619 0.00 0.00 0.00 2.66
56 57 2.489329 CCATTGCCTCTACCACAGTTTG 59.511 50.000 0.00 0.00 0.00 2.93
57 58 3.411446 CATTGCCTCTACCACAGTTTGA 58.589 45.455 0.00 0.00 0.00 2.69
58 59 2.839486 TGCCTCTACCACAGTTTGAG 57.161 50.000 0.00 0.00 0.00 3.02
59 60 1.347707 TGCCTCTACCACAGTTTGAGG 59.652 52.381 0.00 0.00 43.10 3.86
60 61 2.100605 CCTCTACCACAGTTTGAGGC 57.899 55.000 0.00 0.00 38.12 4.70
61 62 1.625818 CCTCTACCACAGTTTGAGGCT 59.374 52.381 0.00 0.00 38.12 4.58
62 63 2.039084 CCTCTACCACAGTTTGAGGCTT 59.961 50.000 0.00 0.00 38.12 4.35
63 64 3.070018 CTCTACCACAGTTTGAGGCTTG 58.930 50.000 0.00 0.00 30.80 4.01
64 65 2.438021 TCTACCACAGTTTGAGGCTTGT 59.562 45.455 0.00 0.00 30.80 3.16
65 66 1.680338 ACCACAGTTTGAGGCTTGTC 58.320 50.000 0.00 0.00 30.80 3.18
66 67 0.588252 CCACAGTTTGAGGCTTGTCG 59.412 55.000 0.00 0.00 0.00 4.35
67 68 0.588252 CACAGTTTGAGGCTTGTCGG 59.412 55.000 0.00 0.00 0.00 4.79
68 69 1.166531 ACAGTTTGAGGCTTGTCGGC 61.167 55.000 0.00 0.00 38.75 5.54
69 70 1.961277 AGTTTGAGGCTTGTCGGCG 60.961 57.895 0.00 0.00 44.22 6.46
70 71 3.353836 TTTGAGGCTTGTCGGCGC 61.354 61.111 0.00 0.00 44.22 6.53
71 72 4.617520 TTGAGGCTTGTCGGCGCA 62.618 61.111 10.83 0.00 45.73 6.09
72 73 4.617520 TGAGGCTTGTCGGCGCAA 62.618 61.111 10.83 14.19 44.52 4.85
73 74 3.127533 GAGGCTTGTCGGCGCAAT 61.128 61.111 10.83 3.49 44.22 3.56
74 75 3.100862 GAGGCTTGTCGGCGCAATC 62.101 63.158 10.83 11.69 44.22 2.67
75 76 3.127533 GGCTTGTCGGCGCAATCT 61.128 61.111 10.83 0.00 0.00 2.40
76 77 2.690778 GGCTTGTCGGCGCAATCTT 61.691 57.895 10.83 0.00 0.00 2.40
77 78 1.366111 GGCTTGTCGGCGCAATCTTA 61.366 55.000 10.83 0.00 0.00 2.10
78 79 0.247695 GCTTGTCGGCGCAATCTTAC 60.248 55.000 10.83 1.85 0.00 2.34
79 80 0.373716 CTTGTCGGCGCAATCTTACC 59.626 55.000 10.83 0.00 0.00 2.85
80 81 1.022451 TTGTCGGCGCAATCTTACCC 61.022 55.000 10.83 0.00 0.00 3.69
81 82 1.153429 GTCGGCGCAATCTTACCCT 60.153 57.895 10.83 0.00 0.00 4.34
82 83 0.743345 GTCGGCGCAATCTTACCCTT 60.743 55.000 10.83 0.00 0.00 3.95
83 84 0.461339 TCGGCGCAATCTTACCCTTC 60.461 55.000 10.83 0.00 0.00 3.46
84 85 0.462047 CGGCGCAATCTTACCCTTCT 60.462 55.000 10.83 0.00 0.00 2.85
85 86 1.202486 CGGCGCAATCTTACCCTTCTA 60.202 52.381 10.83 0.00 0.00 2.10
86 87 2.484889 GGCGCAATCTTACCCTTCTAG 58.515 52.381 10.83 0.00 0.00 2.43
87 88 2.102588 GGCGCAATCTTACCCTTCTAGA 59.897 50.000 10.83 0.00 0.00 2.43
88 89 3.244249 GGCGCAATCTTACCCTTCTAGAT 60.244 47.826 10.83 0.00 0.00 1.98
89 90 4.381411 GCGCAATCTTACCCTTCTAGATT 58.619 43.478 0.30 0.00 38.74 2.40
90 91 4.449405 GCGCAATCTTACCCTTCTAGATTC 59.551 45.833 0.30 0.00 36.70 2.52
91 92 5.740513 GCGCAATCTTACCCTTCTAGATTCT 60.741 44.000 0.30 0.00 36.70 2.40
92 93 6.284459 CGCAATCTTACCCTTCTAGATTCTT 58.716 40.000 0.00 0.00 36.70 2.52
93 94 6.763610 CGCAATCTTACCCTTCTAGATTCTTT 59.236 38.462 0.00 0.00 36.70 2.52
94 95 7.926555 CGCAATCTTACCCTTCTAGATTCTTTA 59.073 37.037 0.00 0.00 36.70 1.85
95 96 9.267084 GCAATCTTACCCTTCTAGATTCTTTAG 57.733 37.037 0.00 0.00 36.70 1.85
96 97 9.771534 CAATCTTACCCTTCTAGATTCTTTAGG 57.228 37.037 0.00 0.00 36.70 2.69
97 98 9.731001 AATCTTACCCTTCTAGATTCTTTAGGA 57.269 33.333 7.37 0.00 34.41 2.94
98 99 9.731001 ATCTTACCCTTCTAGATTCTTTAGGAA 57.269 33.333 7.37 0.00 38.41 3.36
99 100 9.203163 TCTTACCCTTCTAGATTCTTTAGGAAG 57.797 37.037 7.37 4.80 37.36 3.46
100 101 8.912614 TTACCCTTCTAGATTCTTTAGGAAGT 57.087 34.615 7.37 1.55 37.36 3.01
101 102 7.189079 ACCCTTCTAGATTCTTTAGGAAGTG 57.811 40.000 7.37 5.34 37.36 3.16
102 103 6.157123 ACCCTTCTAGATTCTTTAGGAAGTGG 59.843 42.308 7.37 12.45 37.36 4.00
103 104 6.052360 CCTTCTAGATTCTTTAGGAAGTGGC 58.948 44.000 0.20 0.00 37.36 5.01
104 105 6.126911 CCTTCTAGATTCTTTAGGAAGTGGCT 60.127 42.308 0.20 0.00 37.36 4.75
105 106 7.070074 CCTTCTAGATTCTTTAGGAAGTGGCTA 59.930 40.741 0.20 0.00 37.36 3.93
106 107 7.973048 TCTAGATTCTTTAGGAAGTGGCTAA 57.027 36.000 0.00 0.00 37.36 3.09
107 108 8.012957 TCTAGATTCTTTAGGAAGTGGCTAAG 57.987 38.462 0.00 0.00 37.36 2.18
108 109 6.875972 AGATTCTTTAGGAAGTGGCTAAGA 57.124 37.500 0.00 0.00 37.36 2.10
109 110 7.444703 AGATTCTTTAGGAAGTGGCTAAGAT 57.555 36.000 0.00 0.00 37.36 2.40
110 111 7.866870 AGATTCTTTAGGAAGTGGCTAAGATT 58.133 34.615 0.00 0.00 37.36 2.40
111 112 7.772757 AGATTCTTTAGGAAGTGGCTAAGATTG 59.227 37.037 0.00 0.00 37.36 2.67
112 113 6.620877 TCTTTAGGAAGTGGCTAAGATTGA 57.379 37.500 0.00 0.00 34.41 2.57
113 114 6.644347 TCTTTAGGAAGTGGCTAAGATTGAG 58.356 40.000 0.00 0.00 34.41 3.02
114 115 3.922171 AGGAAGTGGCTAAGATTGAGG 57.078 47.619 0.00 0.00 0.00 3.86
115 116 2.507471 AGGAAGTGGCTAAGATTGAGGG 59.493 50.000 0.00 0.00 0.00 4.30
116 117 2.505819 GGAAGTGGCTAAGATTGAGGGA 59.494 50.000 0.00 0.00 0.00 4.20
117 118 3.432890 GGAAGTGGCTAAGATTGAGGGAG 60.433 52.174 0.00 0.00 0.00 4.30
118 119 2.122768 AGTGGCTAAGATTGAGGGAGG 58.877 52.381 0.00 0.00 0.00 4.30
119 120 1.141858 GTGGCTAAGATTGAGGGAGGG 59.858 57.143 0.00 0.00 0.00 4.30
120 121 1.274416 TGGCTAAGATTGAGGGAGGGT 60.274 52.381 0.00 0.00 0.00 4.34
121 122 1.141858 GGCTAAGATTGAGGGAGGGTG 59.858 57.143 0.00 0.00 0.00 4.61
122 123 1.840635 GCTAAGATTGAGGGAGGGTGT 59.159 52.381 0.00 0.00 0.00 4.16
123 124 2.239907 GCTAAGATTGAGGGAGGGTGTT 59.760 50.000 0.00 0.00 0.00 3.32
124 125 3.454812 GCTAAGATTGAGGGAGGGTGTTA 59.545 47.826 0.00 0.00 0.00 2.41
125 126 4.443598 GCTAAGATTGAGGGAGGGTGTTAG 60.444 50.000 0.00 0.00 0.00 2.34
126 127 3.491766 AGATTGAGGGAGGGTGTTAGA 57.508 47.619 0.00 0.00 0.00 2.10
127 128 3.108376 AGATTGAGGGAGGGTGTTAGAC 58.892 50.000 0.00 0.00 0.00 2.59
128 129 2.715763 TTGAGGGAGGGTGTTAGACT 57.284 50.000 0.00 0.00 0.00 3.24
129 130 1.938585 TGAGGGAGGGTGTTAGACTG 58.061 55.000 0.00 0.00 0.00 3.51
130 131 1.149288 TGAGGGAGGGTGTTAGACTGT 59.851 52.381 0.00 0.00 0.00 3.55
131 132 2.380932 TGAGGGAGGGTGTTAGACTGTA 59.619 50.000 0.00 0.00 0.00 2.74
132 133 3.012502 TGAGGGAGGGTGTTAGACTGTAT 59.987 47.826 0.00 0.00 0.00 2.29
133 134 4.231195 TGAGGGAGGGTGTTAGACTGTATA 59.769 45.833 0.00 0.00 0.00 1.47
134 135 4.805744 AGGGAGGGTGTTAGACTGTATAG 58.194 47.826 0.00 0.00 0.00 1.31
135 136 3.321396 GGGAGGGTGTTAGACTGTATAGC 59.679 52.174 0.00 0.00 0.00 2.97
136 137 3.321396 GGAGGGTGTTAGACTGTATAGCC 59.679 52.174 0.00 0.00 0.00 3.93
137 138 4.216708 GAGGGTGTTAGACTGTATAGCCT 58.783 47.826 6.61 6.61 38.61 4.58
138 139 4.621769 AGGGTGTTAGACTGTATAGCCTT 58.378 43.478 0.00 0.00 32.59 4.35
139 140 5.030820 AGGGTGTTAGACTGTATAGCCTTT 58.969 41.667 0.00 0.00 32.59 3.11
140 141 6.200114 AGGGTGTTAGACTGTATAGCCTTTA 58.800 40.000 0.00 0.00 32.59 1.85
141 142 6.844917 AGGGTGTTAGACTGTATAGCCTTTAT 59.155 38.462 0.00 0.00 32.59 1.40
142 143 8.008922 AGGGTGTTAGACTGTATAGCCTTTATA 58.991 37.037 0.00 0.00 32.59 0.98
143 144 8.813951 GGGTGTTAGACTGTATAGCCTTTATAT 58.186 37.037 0.00 0.00 0.00 0.86
150 151 9.909644 AGACTGTATAGCCTTTATATTTACACG 57.090 33.333 0.00 0.00 0.00 4.49
151 152 9.688592 GACTGTATAGCCTTTATATTTACACGT 57.311 33.333 0.00 0.00 0.00 4.49
152 153 9.472361 ACTGTATAGCCTTTATATTTACACGTG 57.528 33.333 15.48 15.48 0.00 4.49
153 154 9.472361 CTGTATAGCCTTTATATTTACACGTGT 57.528 33.333 26.52 26.52 0.00 4.49
168 169 7.865875 TTACACGTGTATATTGTAACGTTGT 57.134 32.000 27.82 0.00 46.27 3.32
169 170 8.956617 TTACACGTGTATATTGTAACGTTGTA 57.043 30.769 27.82 5.43 46.27 2.41
170 171 9.566530 TTACACGTGTATATTGTAACGTTGTAT 57.433 29.630 27.82 6.78 46.27 2.29
171 172 8.464770 ACACGTGTATATTGTAACGTTGTATT 57.535 30.769 21.98 0.00 46.27 1.89
172 173 8.586273 ACACGTGTATATTGTAACGTTGTATTC 58.414 33.333 21.98 3.40 46.27 1.75
173 174 8.051909 CACGTGTATATTGTAACGTTGTATTCC 58.948 37.037 11.99 0.74 46.27 3.01
174 175 7.758980 ACGTGTATATTGTAACGTTGTATTCCA 59.241 33.333 11.99 2.95 46.27 3.53
175 176 8.051909 CGTGTATATTGTAACGTTGTATTCCAC 58.948 37.037 11.99 11.77 0.00 4.02
176 177 9.090692 GTGTATATTGTAACGTTGTATTCCACT 57.909 33.333 11.99 0.00 0.00 4.00
177 178 9.304731 TGTATATTGTAACGTTGTATTCCACTC 57.695 33.333 11.99 0.00 0.00 3.51
178 179 9.304731 GTATATTGTAACGTTGTATTCCACTCA 57.695 33.333 11.99 0.00 0.00 3.41
179 180 8.958119 ATATTGTAACGTTGTATTCCACTCAT 57.042 30.769 11.99 0.00 0.00 2.90
180 181 7.681939 ATTGTAACGTTGTATTCCACTCATT 57.318 32.000 11.99 0.00 0.00 2.57
181 182 8.780846 ATTGTAACGTTGTATTCCACTCATTA 57.219 30.769 11.99 0.00 0.00 1.90
182 183 8.780846 TTGTAACGTTGTATTCCACTCATTAT 57.219 30.769 11.99 0.00 0.00 1.28
183 184 9.872721 TTGTAACGTTGTATTCCACTCATTATA 57.127 29.630 11.99 0.00 0.00 0.98
198 199 9.935241 CCACTCATTATATATATGTGATAGGCC 57.065 37.037 5.44 0.00 0.00 5.19
199 200 9.631452 CACTCATTATATATATGTGATAGGCCG 57.369 37.037 5.44 1.01 0.00 6.13
200 201 8.807118 ACTCATTATATATATGTGATAGGCCGG 58.193 37.037 5.44 0.00 0.00 6.13
201 202 8.721133 TCATTATATATATGTGATAGGCCGGT 57.279 34.615 1.90 0.00 0.00 5.28
202 203 9.154632 TCATTATATATATGTGATAGGCCGGTT 57.845 33.333 1.90 0.00 0.00 4.44
203 204 9.424319 CATTATATATATGTGATAGGCCGGTTC 57.576 37.037 1.90 0.00 0.00 3.62
204 205 4.755266 ATATATGTGATAGGCCGGTTCC 57.245 45.455 1.90 0.00 0.00 3.62
205 206 1.053424 TATGTGATAGGCCGGTTCCC 58.947 55.000 1.90 0.00 0.00 3.97
206 207 1.705997 ATGTGATAGGCCGGTTCCCC 61.706 60.000 1.90 0.00 0.00 4.81
207 208 2.770904 TGATAGGCCGGTTCCCCC 60.771 66.667 1.90 0.00 0.00 5.40
208 209 2.770904 GATAGGCCGGTTCCCCCA 60.771 66.667 1.90 0.00 0.00 4.96
209 210 2.286578 ATAGGCCGGTTCCCCCAA 60.287 61.111 1.90 0.00 0.00 4.12
210 211 1.928714 GATAGGCCGGTTCCCCCAAA 61.929 60.000 1.90 0.00 0.00 3.28
211 212 1.511316 ATAGGCCGGTTCCCCCAAAA 61.511 55.000 1.90 0.00 0.00 2.44
212 213 2.429235 TAGGCCGGTTCCCCCAAAAC 62.429 60.000 1.90 0.00 0.00 2.43
213 214 3.307906 GCCGGTTCCCCCAAAACC 61.308 66.667 1.90 0.00 42.30 3.27
214 215 2.524044 CCGGTTCCCCCAAAACCT 59.476 61.111 0.00 0.00 43.33 3.50
215 216 1.769006 CCGGTTCCCCCAAAACCTA 59.231 57.895 0.00 0.00 43.33 3.08
216 217 0.333652 CCGGTTCCCCCAAAACCTAT 59.666 55.000 0.00 0.00 43.33 2.57
217 218 1.272816 CCGGTTCCCCCAAAACCTATT 60.273 52.381 0.00 0.00 43.33 1.73
218 219 1.822371 CGGTTCCCCCAAAACCTATTG 59.178 52.381 3.76 0.00 43.33 1.90
219 220 2.820105 CGGTTCCCCCAAAACCTATTGT 60.820 50.000 3.76 0.00 43.33 2.71
220 221 2.829720 GGTTCCCCCAAAACCTATTGTC 59.170 50.000 0.00 0.00 42.42 3.18
221 222 3.501568 GGTTCCCCCAAAACCTATTGTCT 60.502 47.826 0.00 0.00 42.42 3.41
222 223 3.732048 TCCCCCAAAACCTATTGTCTC 57.268 47.619 0.00 0.00 0.00 3.36
223 224 2.990284 TCCCCCAAAACCTATTGTCTCA 59.010 45.455 0.00 0.00 0.00 3.27
224 225 3.089284 CCCCCAAAACCTATTGTCTCAC 58.911 50.000 0.00 0.00 0.00 3.51
225 226 3.499563 CCCCCAAAACCTATTGTCTCACA 60.500 47.826 0.00 0.00 0.00 3.58
230 231 6.094048 CCCAAAACCTATTGTCTCACACTATG 59.906 42.308 0.00 0.00 0.00 2.23
254 255 2.543578 GCGGAATGCACAGAGTTGA 58.456 52.632 0.00 0.00 45.45 3.18
257 258 2.476854 GCGGAATGCACAGAGTTGATTC 60.477 50.000 0.00 0.00 45.45 2.52
318 319 1.804601 ATTCGGTCCTCGGAAAACAC 58.195 50.000 0.00 0.00 39.77 3.32
320 321 1.007038 CGGTCCTCGGAAAACACGA 60.007 57.895 0.00 0.00 38.79 4.35
436 437 6.156775 GGGAATAACACCTACTACCCTTACAA 59.843 42.308 0.00 0.00 33.99 2.41
441 442 5.339477 ACACCTACTACCCTTACAAGTCAT 58.661 41.667 0.00 0.00 0.00 3.06
494 495 0.251073 GGTAGGTAGGAAAAGGCGCA 59.749 55.000 10.83 0.00 0.00 6.09
520 521 2.046314 CGTTGCCCCTTCCACGAT 60.046 61.111 0.00 0.00 0.00 3.73
537 538 1.729284 GATCCCGTTCTAAAACCGCA 58.271 50.000 0.00 0.00 31.27 5.69
603 616 6.377327 AGAACAGTTTGTGATTTGTACAGG 57.623 37.500 0.00 0.00 0.00 4.00
638 651 9.158233 AGCACAATTTTATTCATTTCATTCCTG 57.842 29.630 0.00 0.00 0.00 3.86
704 717 4.410743 GCCAAAGCTCTGCACGCC 62.411 66.667 0.00 0.00 35.50 5.68
716 729 4.135153 CACGCCCCCACGAGAGAG 62.135 72.222 0.00 0.00 36.70 3.20
717 730 4.361971 ACGCCCCCACGAGAGAGA 62.362 66.667 0.00 0.00 36.70 3.10
718 731 3.522731 CGCCCCCACGAGAGAGAG 61.523 72.222 0.00 0.00 34.06 3.20
719 732 2.043852 GCCCCCACGAGAGAGAGA 60.044 66.667 0.00 0.00 0.00 3.10
720 733 1.682684 GCCCCCACGAGAGAGAGAA 60.683 63.158 0.00 0.00 0.00 2.87
725 738 2.619332 CCCCACGAGAGAGAGAAAGAGA 60.619 54.545 0.00 0.00 0.00 3.10
728 741 4.006989 CCACGAGAGAGAGAAAGAGAGAA 58.993 47.826 0.00 0.00 0.00 2.87
729 742 4.094887 CCACGAGAGAGAGAAAGAGAGAAG 59.905 50.000 0.00 0.00 0.00 2.85
739 752 5.784906 AGAGAAAGAGAGAAGGAATTGAGGT 59.215 40.000 0.00 0.00 0.00 3.85
840 865 1.152546 GGGCTCCTCTCCTCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
841 866 1.655114 GGGCTCCTCTCCTCTCTCCT 61.655 65.000 0.00 0.00 0.00 3.69
845 870 2.430694 GCTCCTCTCCTCTCTCCTTTTC 59.569 54.545 0.00 0.00 0.00 2.29
846 871 3.881713 GCTCCTCTCCTCTCTCCTTTTCT 60.882 52.174 0.00 0.00 0.00 2.52
1117 1159 2.047179 ACGGGGCGAAGAAGAAGC 60.047 61.111 0.00 0.00 0.00 3.86
1122 1164 3.500642 GCGAAGAAGAAGCCCCGC 61.501 66.667 0.00 0.00 35.91 6.13
1239 1281 2.594962 CCTGCACGTGTTCACCGTC 61.595 63.158 18.38 0.00 36.17 4.79
1242 1284 3.698463 CACGTGTTCACCGTCGCC 61.698 66.667 7.58 0.00 36.17 5.54
1445 1487 2.603473 CCCCACGTGTCCTCCTCA 60.603 66.667 15.65 0.00 0.00 3.86
1448 1490 1.004918 CCACGTGTCCTCCTCAACC 60.005 63.158 15.65 0.00 0.00 3.77
1519 1565 1.137282 GGCAACTGGTAGAGGAGTAGC 59.863 57.143 0.00 0.00 0.00 3.58
1520 1566 1.825474 GCAACTGGTAGAGGAGTAGCA 59.175 52.381 0.00 0.00 0.00 3.49
1526 1572 3.880490 CTGGTAGAGGAGTAGCAGTAGTG 59.120 52.174 0.00 0.00 41.59 2.74
1616 1662 5.586243 ACATCGATGGCCTAATATAATGCAC 59.414 40.000 28.09 0.00 0.00 4.57
1755 1813 2.768253 TCTGGTGCACCATTGAGTAG 57.232 50.000 37.66 23.85 46.46 2.57
1775 1833 9.060347 TGAGTAGCTTCATGGATAATTGAAATC 57.940 33.333 0.00 0.00 31.85 2.17
1791 1849 6.870971 TTGAAATCTAAAAGCTACACCGTT 57.129 33.333 0.00 0.00 0.00 4.44
1954 2015 1.296056 CTGTCCTAAAACGGGCGTGG 61.296 60.000 0.00 0.00 0.00 4.94
1964 2026 2.434359 GGGCGTGGAAGTTCGAGG 60.434 66.667 3.49 3.49 0.00 4.63
1972 2034 3.059800 CGTGGAAGTTCGAGGTTTCTTTC 60.060 47.826 0.00 0.00 0.00 2.62
2010 2072 5.238432 TGGTTACACAGTAATTGAGCTGTTG 59.762 40.000 0.00 7.78 43.27 3.33
2011 2073 5.238650 GGTTACACAGTAATTGAGCTGTTGT 59.761 40.000 0.00 11.46 43.27 3.32
2020 2082 2.708216 TGAGCTGTTGTTCCTTGTGA 57.292 45.000 0.00 0.00 0.00 3.58
2060 2124 1.039856 GTGTTCCCAACATGGCTTGT 58.960 50.000 0.00 0.00 44.35 3.16
2101 2169 7.707624 AGCATCAAGATCAATTCAACCTTTA 57.292 32.000 0.00 0.00 0.00 1.85
2127 2195 8.975295 ACGTTAATTAATAACTACTCCCTCTGT 58.025 33.333 0.31 0.00 41.49 3.41
2136 2204 9.503399 AATAACTACTCCCTCTGTAAACAAAAG 57.497 33.333 0.00 0.00 0.00 2.27
2137 2205 6.742559 ACTACTCCCTCTGTAAACAAAAGA 57.257 37.500 0.00 0.00 0.00 2.52
2138 2206 6.760291 ACTACTCCCTCTGTAAACAAAAGAG 58.240 40.000 0.00 0.00 37.73 2.85
2139 2207 4.390264 ACTCCCTCTGTAAACAAAAGAGC 58.610 43.478 0.00 0.00 36.85 4.09
2140 2208 4.141482 ACTCCCTCTGTAAACAAAAGAGCA 60.141 41.667 0.00 0.00 36.85 4.26
2141 2209 4.985538 TCCCTCTGTAAACAAAAGAGCAT 58.014 39.130 0.00 0.00 36.85 3.79
2142 2210 5.385198 TCCCTCTGTAAACAAAAGAGCATT 58.615 37.500 0.00 0.00 36.85 3.56
2143 2211 5.833131 TCCCTCTGTAAACAAAAGAGCATTT 59.167 36.000 0.00 0.00 36.85 2.32
2144 2212 7.001674 TCCCTCTGTAAACAAAAGAGCATTTA 58.998 34.615 0.00 0.00 36.85 1.40
2145 2213 7.174946 TCCCTCTGTAAACAAAAGAGCATTTAG 59.825 37.037 0.00 0.00 36.85 1.85
2146 2214 7.174946 CCCTCTGTAAACAAAAGAGCATTTAGA 59.825 37.037 0.00 0.00 36.85 2.10
2147 2215 8.734386 CCTCTGTAAACAAAAGAGCATTTAGAT 58.266 33.333 0.00 0.00 36.85 1.98
2171 2239 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
2172 2240 9.733219 ATTACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2173 2241 6.562518 ACTAAAGTAGTGATCTAAACGCTCC 58.437 40.000 0.00 0.00 37.69 4.70
2174 2242 5.662674 AAAGTAGTGATCTAAACGCTCCT 57.337 39.130 0.00 0.00 0.00 3.69
2175 2243 6.770746 AAAGTAGTGATCTAAACGCTCCTA 57.229 37.500 0.00 0.00 0.00 2.94
2176 2244 6.963083 AAGTAGTGATCTAAACGCTCCTAT 57.037 37.500 0.00 0.00 0.00 2.57
2177 2245 8.461249 AAAGTAGTGATCTAAACGCTCCTATA 57.539 34.615 0.00 0.00 0.00 1.31
2178 2246 8.638629 AAGTAGTGATCTAAACGCTCCTATAT 57.361 34.615 0.00 0.00 0.00 0.86
2179 2247 8.638629 AGTAGTGATCTAAACGCTCCTATATT 57.361 34.615 0.00 0.00 0.00 1.28
2180 2248 9.736414 AGTAGTGATCTAAACGCTCCTATATTA 57.264 33.333 0.00 0.00 0.00 0.98
2181 2249 9.991388 GTAGTGATCTAAACGCTCCTATATTAG 57.009 37.037 0.00 0.00 0.00 1.73
2182 2250 8.638629 AGTGATCTAAACGCTCCTATATTAGT 57.361 34.615 0.00 0.00 0.00 2.24
2183 2251 9.080097 AGTGATCTAAACGCTCCTATATTAGTT 57.920 33.333 0.00 0.00 0.00 2.24
2184 2252 9.694137 GTGATCTAAACGCTCCTATATTAGTTT 57.306 33.333 0.00 0.00 36.11 2.66
2187 2255 9.837525 ATCTAAACGCTCCTATATTAGTTTACG 57.162 33.333 0.00 0.00 34.29 3.18
2188 2256 8.292448 TCTAAACGCTCCTATATTAGTTTACGG 58.708 37.037 0.00 0.00 34.29 4.02
2189 2257 6.639632 AACGCTCCTATATTAGTTTACGGA 57.360 37.500 0.00 0.00 0.00 4.69
2190 2258 6.251655 ACGCTCCTATATTAGTTTACGGAG 57.748 41.667 0.00 0.00 39.55 4.63
2191 2259 5.182760 ACGCTCCTATATTAGTTTACGGAGG 59.817 44.000 0.00 0.00 37.59 4.30
2192 2260 5.392811 CGCTCCTATATTAGTTTACGGAGGG 60.393 48.000 0.00 0.00 41.54 4.30
2193 2261 5.713861 GCTCCTATATTAGTTTACGGAGGGA 59.286 44.000 0.00 0.00 37.59 4.20
2194 2262 6.127675 GCTCCTATATTAGTTTACGGAGGGAG 60.128 46.154 0.00 0.00 37.59 4.30
2195 2263 6.856757 TCCTATATTAGTTTACGGAGGGAGT 58.143 40.000 0.00 0.00 0.00 3.85
2196 2264 7.988937 TCCTATATTAGTTTACGGAGGGAGTA 58.011 38.462 0.00 0.00 0.00 2.59
2207 2275 2.418746 CGGAGGGAGTATCAACCAAGTG 60.419 54.545 0.00 0.00 36.25 3.16
2340 2408 1.279025 GGATTAGGACCTGTGGGCCA 61.279 60.000 11.54 0.00 35.63 5.36
2464 2545 1.739466 CACGGACATTGACCCTGATTG 59.261 52.381 0.00 0.00 0.00 2.67
2468 2549 4.080582 ACGGACATTGACCCTGATTGATTA 60.081 41.667 0.00 0.00 0.00 1.75
2469 2550 4.881273 CGGACATTGACCCTGATTGATTAA 59.119 41.667 0.00 0.00 0.00 1.40
2470 2551 5.532406 CGGACATTGACCCTGATTGATTAAT 59.468 40.000 0.00 0.00 0.00 1.40
2471 2552 6.039717 CGGACATTGACCCTGATTGATTAATT 59.960 38.462 0.00 0.00 0.00 1.40
2472 2553 7.205297 GGACATTGACCCTGATTGATTAATTG 58.795 38.462 0.00 0.00 0.00 2.32
2473 2554 7.116075 ACATTGACCCTGATTGATTAATTGG 57.884 36.000 0.00 0.00 0.00 3.16
2474 2555 6.669154 ACATTGACCCTGATTGATTAATTGGT 59.331 34.615 0.00 1.31 0.00 3.67
2475 2556 7.180766 ACATTGACCCTGATTGATTAATTGGTT 59.819 33.333 0.00 0.00 0.00 3.67
2670 2751 4.529377 ACGTCCCTCACTCCATTTTACTTA 59.471 41.667 0.00 0.00 0.00 2.24
2679 2761 6.015688 TCACTCCATTTTACTTACAGTCTCGT 60.016 38.462 0.00 0.00 0.00 4.18
2692 2774 4.724303 ACAGTCTCGTTAAATCTCAGTCG 58.276 43.478 0.00 0.00 0.00 4.18
2696 2778 5.181622 AGTCTCGTTAAATCTCAGTCGACTT 59.818 40.000 17.26 2.43 0.00 3.01
2697 2779 5.284188 GTCTCGTTAAATCTCAGTCGACTTG 59.716 44.000 17.26 12.07 0.00 3.16
2699 2781 4.022589 TCGTTAAATCTCAGTCGACTTGGT 60.023 41.667 17.26 5.22 0.00 3.67
2701 2783 5.860182 CGTTAAATCTCAGTCGACTTGGTTA 59.140 40.000 17.26 10.71 0.00 2.85
2704 2786 3.232213 TCTCAGTCGACTTGGTTATGC 57.768 47.619 17.26 0.00 0.00 3.14
2705 2787 2.094182 TCTCAGTCGACTTGGTTATGCC 60.094 50.000 17.26 0.00 37.90 4.40
2706 2788 1.066430 TCAGTCGACTTGGTTATGCCC 60.066 52.381 17.26 0.00 36.04 5.36
2707 2789 0.252197 AGTCGACTTGGTTATGCCCC 59.748 55.000 13.58 0.00 36.04 5.80
2708 2790 0.035820 GTCGACTTGGTTATGCCCCA 60.036 55.000 8.70 0.00 36.04 4.96
2709 2791 0.916086 TCGACTTGGTTATGCCCCAT 59.084 50.000 0.00 0.00 36.04 4.00
2710 2792 1.024271 CGACTTGGTTATGCCCCATG 58.976 55.000 0.00 0.00 36.04 3.66
2711 2793 0.746659 GACTTGGTTATGCCCCATGC 59.253 55.000 0.00 0.00 41.77 4.06
2712 2794 0.336048 ACTTGGTTATGCCCCATGCT 59.664 50.000 0.00 0.00 42.00 3.79
2713 2795 1.568597 ACTTGGTTATGCCCCATGCTA 59.431 47.619 0.00 0.00 42.00 3.49
2714 2796 2.177669 ACTTGGTTATGCCCCATGCTAT 59.822 45.455 0.00 0.00 42.00 2.97
2715 2797 3.397618 ACTTGGTTATGCCCCATGCTATA 59.602 43.478 0.00 0.00 42.00 1.31
2721 2803 2.472695 TGCCCCATGCTATATTCGAC 57.527 50.000 0.00 0.00 42.00 4.20
2726 2808 4.141937 GCCCCATGCTATATTCGACAGATA 60.142 45.833 0.00 0.00 36.87 1.98
2741 2823 8.593492 TTCGACAGATATTACATTGAGGATTG 57.407 34.615 0.00 0.00 0.00 2.67
2751 2833 8.851541 ATTACATTGAGGATTGTGCAATTTTT 57.148 26.923 0.00 0.00 30.37 1.94
2777 2870 3.380479 TGACCGAGACTTGGTTAAGTG 57.620 47.619 15.92 0.00 46.79 3.16
2783 2876 3.127425 AGACTTGGTTAAGTGTCAGCC 57.873 47.619 0.00 0.00 46.79 4.85
2947 3041 2.364579 ACTTGGCATGCCCATGGG 60.365 61.111 33.44 27.87 44.89 4.00
2965 3059 3.190878 CGGATGGAAACCAGCTGC 58.809 61.111 8.66 0.00 39.50 5.25
2979 3073 2.298163 CCAGCTGCCTGAATTCAAAAGT 59.702 45.455 8.66 0.00 41.77 2.66
2981 3075 3.255149 CAGCTGCCTGAATTCAAAAGTCT 59.745 43.478 9.88 6.30 41.77 3.24
2998 3092 1.610522 GTCTGTCAGCAAGTTGGCAAT 59.389 47.619 1.92 0.00 31.32 3.56
3020 3114 8.934825 GCAATTGCCAGAATTTTAAATTACAGA 58.065 29.630 20.06 0.00 34.31 3.41
3023 3117 8.477984 TTGCCAGAATTTTAAATTACAGATGC 57.522 30.769 2.65 2.42 0.00 3.91
3146 3244 0.957395 CGTGCACCAGAAGGCAGATT 60.957 55.000 12.15 0.00 41.35 2.40
3147 3245 0.524862 GTGCACCAGAAGGCAGATTG 59.475 55.000 5.22 0.00 41.35 2.67
3254 3352 5.419542 TCTATCTCAGCACGCTACAATTTT 58.580 37.500 0.00 0.00 0.00 1.82
3256 3354 3.398406 TCTCAGCACGCTACAATTTTCA 58.602 40.909 0.00 0.00 0.00 2.69
3257 3355 4.002982 TCTCAGCACGCTACAATTTTCAT 58.997 39.130 0.00 0.00 0.00 2.57
3298 3396 2.658593 CGCCCAATAGTCCTCGCG 60.659 66.667 0.00 0.00 0.00 5.87
3321 3419 0.038892 TCTCCTAACGCGTTGACCAC 60.039 55.000 33.40 0.00 0.00 4.16
3328 3426 4.947147 GCGTTGACCACCCCTGCA 62.947 66.667 0.00 0.00 0.00 4.41
3342 3440 4.220382 CACCCCTGCATTCAGAAAAATGTA 59.780 41.667 0.00 0.00 42.95 2.29
3343 3441 4.220602 ACCCCTGCATTCAGAAAAATGTAC 59.779 41.667 0.00 0.00 42.95 2.90
3344 3442 4.414852 CCCTGCATTCAGAAAAATGTACG 58.585 43.478 0.00 0.00 42.95 3.67
3372 3470 1.076533 CGACAGTAGGCGCGAAATGT 61.077 55.000 12.10 12.58 0.00 2.71
3379 3477 1.767289 AGGCGCGAAATGTATACGAG 58.233 50.000 12.10 0.00 0.00 4.18
3493 3591 1.092345 GGCTCTGGGTCGAATCTTGC 61.092 60.000 0.00 0.00 0.00 4.01
3660 3764 1.186200 CCAACATCCTCCTCGACTCA 58.814 55.000 0.00 0.00 0.00 3.41
3669 3773 2.716017 CCTCGACTCAGTGAGCCCC 61.716 68.421 20.31 8.66 32.04 5.80
3693 3797 1.145598 CGGCCTGCTCATCTCACAT 59.854 57.895 0.00 0.00 0.00 3.21
3694 3798 0.879400 CGGCCTGCTCATCTCACATC 60.879 60.000 0.00 0.00 0.00 3.06
3697 3801 1.406477 GCCTGCTCATCTCACATCACA 60.406 52.381 0.00 0.00 0.00 3.58
3699 3803 2.093606 CCTGCTCATCTCACATCACACT 60.094 50.000 0.00 0.00 0.00 3.55
3727 3848 5.978919 TGAAGCTAAGTTGCTCATGTTTTTG 59.021 36.000 0.00 0.00 43.24 2.44
3738 3860 2.739913 TCATGTTTTTGGTCGATCCGTC 59.260 45.455 0.00 0.00 39.52 4.79
3741 3863 1.136057 GTTTTTGGTCGATCCGTCTGC 60.136 52.381 0.00 0.00 39.52 4.26
4456 4580 2.019408 TCGTCGCGTGTTCATGTGG 61.019 57.895 5.77 0.00 0.00 4.17
4551 4695 2.033424 TCTACGATCATGGCGAGTCTTG 59.967 50.000 14.29 0.00 0.00 3.02
4586 4735 5.600696 TGGTTTTCTTTTGCTTTGGATCTC 58.399 37.500 0.00 0.00 0.00 2.75
4624 5637 1.766494 TGCAGAATGTGGCCCATAAG 58.234 50.000 0.00 0.00 39.31 1.73
4663 5676 6.873997 ACAAGAGTACCGATTGATCAACATA 58.126 36.000 11.07 0.00 0.00 2.29
4678 5691 5.037015 TCAACATAACGGAAATTTGGTCG 57.963 39.130 0.00 0.00 0.00 4.79
4686 5699 2.095263 CGGAAATTTGGTCGCATGTTCT 60.095 45.455 0.00 0.00 0.00 3.01
4700 5717 4.171754 GCATGTTCTTCTTGGATTGAAGC 58.828 43.478 0.00 0.00 40.31 3.86
4721 5738 0.859232 ACGACAATGCGAGTGTTCAC 59.141 50.000 4.30 0.00 34.83 3.18
4723 5740 1.136529 CGACAATGCGAGTGTTCACTG 60.137 52.381 10.29 4.51 0.00 3.66
4724 5741 1.867233 GACAATGCGAGTGTTCACTGT 59.133 47.619 10.29 1.96 0.00 3.55
4725 5742 2.287915 GACAATGCGAGTGTTCACTGTT 59.712 45.455 10.29 0.00 0.00 3.16
4726 5743 2.287915 ACAATGCGAGTGTTCACTGTTC 59.712 45.455 10.29 0.49 0.00 3.18
4727 5744 2.238942 ATGCGAGTGTTCACTGTTCA 57.761 45.000 10.29 5.71 0.00 3.18
4728 5745 1.570813 TGCGAGTGTTCACTGTTCAG 58.429 50.000 10.29 0.00 0.00 3.02
4729 5746 1.134818 TGCGAGTGTTCACTGTTCAGT 60.135 47.619 10.29 0.00 0.00 3.41
4730 5747 2.100087 TGCGAGTGTTCACTGTTCAGTA 59.900 45.455 10.29 0.00 0.00 2.74
4731 5748 3.243737 TGCGAGTGTTCACTGTTCAGTAT 60.244 43.478 10.29 0.00 0.00 2.12
4732 5749 3.121944 GCGAGTGTTCACTGTTCAGTATG 59.878 47.826 10.29 0.00 37.54 2.39
4733 5750 3.121944 CGAGTGTTCACTGTTCAGTATGC 59.878 47.826 10.29 0.25 34.76 3.14
4754 5771 2.932855 TGGGTGTCAATCGGTGTTAA 57.067 45.000 0.00 0.00 0.00 2.01
4770 5787 6.211184 TCGGTGTTAAGATAACCTAGGAAACA 59.789 38.462 17.98 10.46 0.00 2.83
4783 5800 5.105432 ACCTAGGAAACAATCGGTCTTCTAC 60.105 44.000 17.98 0.00 0.00 2.59
4792 5809 1.931841 TCGGTCTTCTACGTGATCTCG 59.068 52.381 15.19 15.19 0.00 4.04
4809 5826 4.364415 TCTCGGTTTTGGTTGTTTTGAG 57.636 40.909 0.00 0.00 0.00 3.02
4812 5829 3.129638 TCGGTTTTGGTTGTTTTGAGGAG 59.870 43.478 0.00 0.00 0.00 3.69
4826 5843 2.467880 TGAGGAGGTGGTATCTTGTCC 58.532 52.381 0.00 0.00 0.00 4.02
4847 5864 8.025243 TGTCCGAAAACTACTATGTTTCAATC 57.975 34.615 0.00 0.00 38.98 2.67
4851 5868 8.717821 CCGAAAACTACTATGTTTCAATCTGAA 58.282 33.333 0.00 0.00 38.98 3.02
4889 5906 5.119743 CACATCCACTAGCAATATCATCGTG 59.880 44.000 0.00 0.00 0.00 4.35
4894 5911 4.683320 CACTAGCAATATCATCGTGGTCTG 59.317 45.833 0.00 0.00 0.00 3.51
4897 5914 4.122776 AGCAATATCATCGTGGTCTGTTC 58.877 43.478 0.00 0.00 0.00 3.18
4906 5923 4.044336 TCGTGGTCTGTTCGTTTTTCTA 57.956 40.909 0.00 0.00 0.00 2.10
4910 5927 5.611844 CGTGGTCTGTTCGTTTTTCTACATC 60.612 44.000 0.00 0.00 0.00 3.06
4916 5933 4.386652 TGTTCGTTTTTCTACATCTACGCC 59.613 41.667 0.00 0.00 0.00 5.68
4998 6015 2.804933 GCTCGTTTGGGAGATCCTGATC 60.805 54.545 0.00 0.00 36.08 2.92
5001 6018 1.131638 TTTGGGAGATCCTGATCCGG 58.868 55.000 0.00 0.00 38.58 5.14
5006 6023 2.031768 GATCCTGATCCGGCTGCC 59.968 66.667 9.11 9.11 31.76 4.85
5069 6087 1.298859 GCGCAATCATATCCGACCCC 61.299 60.000 0.30 0.00 0.00 4.95
5071 6089 1.270839 CGCAATCATATCCGACCCCTT 60.271 52.381 0.00 0.00 0.00 3.95
5099 6117 1.299468 GTCGCACCTCCAGCTATCG 60.299 63.158 0.00 0.00 0.00 2.92
5144 6162 2.359850 TTGCTCATCACCCCGCAC 60.360 61.111 0.00 0.00 31.24 5.34
5157 6175 2.050351 CGCACTGTCTCGACCGTT 60.050 61.111 0.00 0.00 0.00 4.44
5168 6186 0.734942 TCGACCGTTTCATCGAAGGC 60.735 55.000 0.00 0.00 43.97 4.35
5291 7132 0.811915 TCAGCTCCGTCTGCTACTTC 59.188 55.000 0.00 0.00 38.92 3.01
5352 7209 1.978542 CGTCTACGTCTTCAACCCAG 58.021 55.000 0.00 0.00 34.11 4.45
5353 7210 1.711206 GTCTACGTCTTCAACCCAGC 58.289 55.000 0.00 0.00 0.00 4.85
5354 7211 0.606604 TCTACGTCTTCAACCCAGCC 59.393 55.000 0.00 0.00 0.00 4.85
5355 7212 0.320374 CTACGTCTTCAACCCAGCCA 59.680 55.000 0.00 0.00 0.00 4.75
5356 7213 0.034337 TACGTCTTCAACCCAGCCAC 59.966 55.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.190118 GTCTGCAAGTTGATCCTTGGAAG 59.810 47.826 7.16 5.58 41.40 3.46
1 2 3.149196 GTCTGCAAGTTGATCCTTGGAA 58.851 45.455 7.16 1.14 41.40 3.53
2 3 2.106338 TGTCTGCAAGTTGATCCTTGGA 59.894 45.455 7.16 9.05 41.70 3.53
3 4 2.507484 TGTCTGCAAGTTGATCCTTGG 58.493 47.619 7.16 0.00 41.70 3.61
4 5 4.008330 AGATGTCTGCAAGTTGATCCTTG 58.992 43.478 7.16 7.21 43.76 3.61
5 6 4.298103 AGATGTCTGCAAGTTGATCCTT 57.702 40.909 7.16 0.00 33.76 3.36
6 7 3.996921 AGATGTCTGCAAGTTGATCCT 57.003 42.857 7.16 0.00 33.76 3.24
7 8 4.005650 TGAAGATGTCTGCAAGTTGATCC 58.994 43.478 7.16 0.00 33.76 3.36
8 9 4.142730 GGTGAAGATGTCTGCAAGTTGATC 60.143 45.833 7.16 0.06 32.26 2.92
9 10 3.755378 GGTGAAGATGTCTGCAAGTTGAT 59.245 43.478 7.16 0.00 32.26 2.57
10 11 3.141398 GGTGAAGATGTCTGCAAGTTGA 58.859 45.455 7.16 0.00 32.26 3.18
11 12 2.880268 TGGTGAAGATGTCTGCAAGTTG 59.120 45.455 0.00 0.00 32.26 3.16
12 13 3.213206 TGGTGAAGATGTCTGCAAGTT 57.787 42.857 0.00 0.00 32.26 2.66
13 14 2.936919 TGGTGAAGATGTCTGCAAGT 57.063 45.000 0.00 0.00 32.26 3.16
14 15 2.095364 GCTTGGTGAAGATGTCTGCAAG 60.095 50.000 0.00 0.00 32.26 4.01
15 16 1.881973 GCTTGGTGAAGATGTCTGCAA 59.118 47.619 0.00 0.00 32.26 4.08
16 17 1.527034 GCTTGGTGAAGATGTCTGCA 58.473 50.000 0.00 0.00 0.00 4.41
17 18 0.807496 GGCTTGGTGAAGATGTCTGC 59.193 55.000 0.00 0.00 0.00 4.26
18 19 2.189594 TGGCTTGGTGAAGATGTCTG 57.810 50.000 0.00 0.00 0.00 3.51
19 20 3.087031 CAATGGCTTGGTGAAGATGTCT 58.913 45.455 0.00 0.00 0.00 3.41
20 21 2.416431 GCAATGGCTTGGTGAAGATGTC 60.416 50.000 0.00 0.00 36.96 3.06
21 22 1.547372 GCAATGGCTTGGTGAAGATGT 59.453 47.619 0.00 0.00 36.96 3.06
22 23 1.134907 GGCAATGGCTTGGTGAAGATG 60.135 52.381 0.00 0.00 40.87 2.90
23 24 1.188863 GGCAATGGCTTGGTGAAGAT 58.811 50.000 0.00 0.00 40.87 2.40
24 25 0.112995 AGGCAATGGCTTGGTGAAGA 59.887 50.000 2.53 0.00 40.87 2.87
25 26 0.529378 GAGGCAATGGCTTGGTGAAG 59.471 55.000 11.53 0.00 38.98 3.02
26 27 0.112995 AGAGGCAATGGCTTGGTGAA 59.887 50.000 11.53 0.00 38.98 3.18
27 28 0.991146 TAGAGGCAATGGCTTGGTGA 59.009 50.000 11.53 0.00 38.98 4.02
28 29 1.098050 GTAGAGGCAATGGCTTGGTG 58.902 55.000 11.53 0.00 38.98 4.17
29 30 0.034089 GGTAGAGGCAATGGCTTGGT 60.034 55.000 11.53 1.63 38.98 3.67
30 31 0.034186 TGGTAGAGGCAATGGCTTGG 60.034 55.000 11.53 0.00 38.98 3.61
31 32 1.098050 GTGGTAGAGGCAATGGCTTG 58.902 55.000 11.53 0.00 38.98 4.01
32 33 0.698238 TGTGGTAGAGGCAATGGCTT 59.302 50.000 11.53 3.86 38.98 4.35
33 34 0.254178 CTGTGGTAGAGGCAATGGCT 59.746 55.000 9.72 9.72 42.48 4.75
34 35 0.035056 ACTGTGGTAGAGGCAATGGC 60.035 55.000 0.00 0.00 40.13 4.40
35 36 2.489329 CAAACTGTGGTAGAGGCAATGG 59.511 50.000 0.00 0.00 0.00 3.16
36 37 3.411446 TCAAACTGTGGTAGAGGCAATG 58.589 45.455 0.00 0.00 0.00 2.82
37 38 3.560025 CCTCAAACTGTGGTAGAGGCAAT 60.560 47.826 0.00 0.00 39.38 3.56
38 39 2.224523 CCTCAAACTGTGGTAGAGGCAA 60.225 50.000 0.00 0.00 39.38 4.52
39 40 1.347707 CCTCAAACTGTGGTAGAGGCA 59.652 52.381 0.00 0.00 39.38 4.75
40 41 2.100605 CCTCAAACTGTGGTAGAGGC 57.899 55.000 0.00 0.00 39.38 4.70
41 42 1.625818 AGCCTCAAACTGTGGTAGAGG 59.374 52.381 11.48 11.48 44.14 3.69
42 43 3.070018 CAAGCCTCAAACTGTGGTAGAG 58.930 50.000 0.00 0.00 33.76 2.43
43 44 2.438021 ACAAGCCTCAAACTGTGGTAGA 59.562 45.455 0.00 0.00 33.76 2.59
44 45 2.808543 GACAAGCCTCAAACTGTGGTAG 59.191 50.000 0.00 0.00 33.76 3.18
45 46 2.805295 CGACAAGCCTCAAACTGTGGTA 60.805 50.000 0.00 0.00 33.76 3.25
46 47 1.680338 GACAAGCCTCAAACTGTGGT 58.320 50.000 0.00 0.00 33.76 4.16
47 48 0.588252 CGACAAGCCTCAAACTGTGG 59.412 55.000 0.00 0.00 34.32 4.17
48 49 0.588252 CCGACAAGCCTCAAACTGTG 59.412 55.000 0.00 0.00 0.00 3.66
49 50 1.166531 GCCGACAAGCCTCAAACTGT 61.167 55.000 0.00 0.00 0.00 3.55
50 51 1.576421 GCCGACAAGCCTCAAACTG 59.424 57.895 0.00 0.00 0.00 3.16
51 52 1.961277 CGCCGACAAGCCTCAAACT 60.961 57.895 0.00 0.00 0.00 2.66
52 53 2.556287 CGCCGACAAGCCTCAAAC 59.444 61.111 0.00 0.00 0.00 2.93
53 54 3.353836 GCGCCGACAAGCCTCAAA 61.354 61.111 0.00 0.00 0.00 2.69
54 55 4.617520 TGCGCCGACAAGCCTCAA 62.618 61.111 4.18 0.00 0.00 3.02
55 56 3.899981 ATTGCGCCGACAAGCCTCA 62.900 57.895 4.18 0.00 31.96 3.86
56 57 3.100862 GATTGCGCCGACAAGCCTC 62.101 63.158 4.18 0.00 31.96 4.70
57 58 3.127533 GATTGCGCCGACAAGCCT 61.128 61.111 4.18 0.00 31.96 4.58
58 59 1.366111 TAAGATTGCGCCGACAAGCC 61.366 55.000 4.18 0.00 36.61 4.35
59 60 0.247695 GTAAGATTGCGCCGACAAGC 60.248 55.000 4.18 0.00 36.20 4.01
60 61 0.373716 GGTAAGATTGCGCCGACAAG 59.626 55.000 4.18 0.00 31.96 3.16
61 62 1.022451 GGGTAAGATTGCGCCGACAA 61.022 55.000 4.18 0.00 0.00 3.18
62 63 1.448893 GGGTAAGATTGCGCCGACA 60.449 57.895 4.18 0.00 0.00 4.35
63 64 0.743345 AAGGGTAAGATTGCGCCGAC 60.743 55.000 4.18 0.00 0.00 4.79
64 65 0.461339 GAAGGGTAAGATTGCGCCGA 60.461 55.000 4.18 0.00 0.00 5.54
65 66 0.462047 AGAAGGGTAAGATTGCGCCG 60.462 55.000 4.18 0.00 0.00 6.46
66 67 2.102588 TCTAGAAGGGTAAGATTGCGCC 59.897 50.000 4.18 0.00 0.00 6.53
67 68 3.454371 TCTAGAAGGGTAAGATTGCGC 57.546 47.619 0.00 0.00 0.00 6.09
68 69 5.848406 AGAATCTAGAAGGGTAAGATTGCG 58.152 41.667 0.00 0.00 39.46 4.85
69 70 9.267084 CTAAAGAATCTAGAAGGGTAAGATTGC 57.733 37.037 0.00 0.00 39.46 3.56
70 71 9.771534 CCTAAAGAATCTAGAAGGGTAAGATTG 57.228 37.037 0.00 0.00 39.46 2.67
71 72 9.731001 TCCTAAAGAATCTAGAAGGGTAAGATT 57.269 33.333 0.00 0.00 41.48 2.40
72 73 9.731001 TTCCTAAAGAATCTAGAAGGGTAAGAT 57.269 33.333 0.00 0.00 0.00 2.40
73 74 9.203163 CTTCCTAAAGAATCTAGAAGGGTAAGA 57.797 37.037 0.00 0.00 34.14 2.10
74 75 8.983789 ACTTCCTAAAGAATCTAGAAGGGTAAG 58.016 37.037 0.00 1.66 36.30 2.34
75 76 8.759782 CACTTCCTAAAGAATCTAGAAGGGTAA 58.240 37.037 0.00 0.00 36.30 2.85
76 77 7.344871 CCACTTCCTAAAGAATCTAGAAGGGTA 59.655 40.741 0.00 0.00 36.30 3.69
77 78 6.157123 CCACTTCCTAAAGAATCTAGAAGGGT 59.843 42.308 0.00 0.00 36.30 4.34
78 79 6.587273 CCACTTCCTAAAGAATCTAGAAGGG 58.413 44.000 0.00 10.38 36.30 3.95
79 80 6.052360 GCCACTTCCTAAAGAATCTAGAAGG 58.948 44.000 0.00 0.00 36.30 3.46
80 81 6.883744 AGCCACTTCCTAAAGAATCTAGAAG 58.116 40.000 0.00 9.34 36.30 2.85
81 82 6.875972 AGCCACTTCCTAAAGAATCTAGAA 57.124 37.500 0.00 0.00 36.30 2.10
82 83 7.839705 TCTTAGCCACTTCCTAAAGAATCTAGA 59.160 37.037 0.00 0.00 36.30 2.43
83 84 8.012957 TCTTAGCCACTTCCTAAAGAATCTAG 57.987 38.462 0.00 0.00 36.30 2.43
84 85 7.973048 TCTTAGCCACTTCCTAAAGAATCTA 57.027 36.000 0.00 0.00 36.30 1.98
85 86 6.875972 TCTTAGCCACTTCCTAAAGAATCT 57.124 37.500 0.00 0.00 36.30 2.40
86 87 7.770897 TCAATCTTAGCCACTTCCTAAAGAATC 59.229 37.037 0.00 0.00 36.30 2.52
87 88 7.633789 TCAATCTTAGCCACTTCCTAAAGAAT 58.366 34.615 0.00 0.00 36.30 2.40
88 89 7.016153 TCAATCTTAGCCACTTCCTAAAGAA 57.984 36.000 0.00 0.00 36.30 2.52
89 90 6.352222 CCTCAATCTTAGCCACTTCCTAAAGA 60.352 42.308 0.00 0.00 36.30 2.52
90 91 5.819901 CCTCAATCTTAGCCACTTCCTAAAG 59.180 44.000 0.00 0.00 38.54 1.85
91 92 5.339200 CCCTCAATCTTAGCCACTTCCTAAA 60.339 44.000 0.00 0.00 0.00 1.85
92 93 4.164221 CCCTCAATCTTAGCCACTTCCTAA 59.836 45.833 0.00 0.00 0.00 2.69
93 94 3.711704 CCCTCAATCTTAGCCACTTCCTA 59.288 47.826 0.00 0.00 0.00 2.94
94 95 2.507471 CCCTCAATCTTAGCCACTTCCT 59.493 50.000 0.00 0.00 0.00 3.36
95 96 2.505819 TCCCTCAATCTTAGCCACTTCC 59.494 50.000 0.00 0.00 0.00 3.46
96 97 3.432890 CCTCCCTCAATCTTAGCCACTTC 60.433 52.174 0.00 0.00 0.00 3.01
97 98 2.507471 CCTCCCTCAATCTTAGCCACTT 59.493 50.000 0.00 0.00 0.00 3.16
98 99 2.122768 CCTCCCTCAATCTTAGCCACT 58.877 52.381 0.00 0.00 0.00 4.00
99 100 1.141858 CCCTCCCTCAATCTTAGCCAC 59.858 57.143 0.00 0.00 0.00 5.01
100 101 1.274416 ACCCTCCCTCAATCTTAGCCA 60.274 52.381 0.00 0.00 0.00 4.75
101 102 1.141858 CACCCTCCCTCAATCTTAGCC 59.858 57.143 0.00 0.00 0.00 3.93
102 103 1.840635 ACACCCTCCCTCAATCTTAGC 59.159 52.381 0.00 0.00 0.00 3.09
103 104 4.962995 TCTAACACCCTCCCTCAATCTTAG 59.037 45.833 0.00 0.00 0.00 2.18
104 105 4.715297 GTCTAACACCCTCCCTCAATCTTA 59.285 45.833 0.00 0.00 0.00 2.10
105 106 3.519913 GTCTAACACCCTCCCTCAATCTT 59.480 47.826 0.00 0.00 0.00 2.40
106 107 3.108376 GTCTAACACCCTCCCTCAATCT 58.892 50.000 0.00 0.00 0.00 2.40
107 108 3.108376 AGTCTAACACCCTCCCTCAATC 58.892 50.000 0.00 0.00 0.00 2.67
108 109 2.840651 CAGTCTAACACCCTCCCTCAAT 59.159 50.000 0.00 0.00 0.00 2.57
109 110 2.257207 CAGTCTAACACCCTCCCTCAA 58.743 52.381 0.00 0.00 0.00 3.02
110 111 1.149288 ACAGTCTAACACCCTCCCTCA 59.851 52.381 0.00 0.00 0.00 3.86
111 112 1.939980 ACAGTCTAACACCCTCCCTC 58.060 55.000 0.00 0.00 0.00 4.30
112 113 3.778622 ATACAGTCTAACACCCTCCCT 57.221 47.619 0.00 0.00 0.00 4.20
113 114 3.321396 GCTATACAGTCTAACACCCTCCC 59.679 52.174 0.00 0.00 0.00 4.30
114 115 3.321396 GGCTATACAGTCTAACACCCTCC 59.679 52.174 0.00 0.00 0.00 4.30
115 116 4.216708 AGGCTATACAGTCTAACACCCTC 58.783 47.826 0.00 0.00 33.99 4.30
116 117 4.267341 AGGCTATACAGTCTAACACCCT 57.733 45.455 0.00 0.00 33.99 4.34
117 118 5.354842 AAAGGCTATACAGTCTAACACCC 57.645 43.478 0.00 0.00 34.96 4.61
124 125 9.909644 CGTGTAAATATAAAGGCTATACAGTCT 57.090 33.333 0.00 0.00 38.81 3.24
125 126 9.688592 ACGTGTAAATATAAAGGCTATACAGTC 57.311 33.333 0.00 0.00 0.00 3.51
126 127 9.472361 CACGTGTAAATATAAAGGCTATACAGT 57.528 33.333 7.58 0.00 0.00 3.55
127 128 9.472361 ACACGTGTAAATATAAAGGCTATACAG 57.528 33.333 21.98 0.00 0.00 2.74
142 143 8.924691 ACAACGTTACAATATACACGTGTAAAT 58.075 29.630 30.46 19.39 44.81 1.40
143 144 8.291888 ACAACGTTACAATATACACGTGTAAA 57.708 30.769 30.46 16.91 44.81 2.01
144 145 7.865875 ACAACGTTACAATATACACGTGTAA 57.134 32.000 30.46 19.73 44.81 2.41
145 146 9.566530 AATACAACGTTACAATATACACGTGTA 57.433 29.630 29.15 29.15 44.81 2.90
146 147 8.464770 AATACAACGTTACAATATACACGTGT 57.535 30.769 26.52 26.52 44.81 4.49
147 148 8.051909 GGAATACAACGTTACAATATACACGTG 58.948 37.037 15.48 15.48 44.81 4.49
149 150 8.051909 GTGGAATACAACGTTACAATATACACG 58.948 37.037 0.00 0.00 38.62 4.49
150 151 9.090692 AGTGGAATACAACGTTACAATATACAC 57.909 33.333 0.00 9.58 0.00 2.90
151 152 9.304731 GAGTGGAATACAACGTTACAATATACA 57.695 33.333 0.00 0.00 0.00 2.29
152 153 9.304731 TGAGTGGAATACAACGTTACAATATAC 57.695 33.333 0.00 0.00 0.00 1.47
154 155 8.958119 ATGAGTGGAATACAACGTTACAATAT 57.042 30.769 0.00 0.00 0.00 1.28
155 156 8.780846 AATGAGTGGAATACAACGTTACAATA 57.219 30.769 0.00 0.00 0.00 1.90
156 157 7.681939 AATGAGTGGAATACAACGTTACAAT 57.318 32.000 0.00 0.00 0.00 2.71
157 158 8.780846 ATAATGAGTGGAATACAACGTTACAA 57.219 30.769 0.00 0.00 0.00 2.41
172 173 9.935241 GGCCTATCACATATATATAATGAGTGG 57.065 37.037 12.91 15.14 0.00 4.00
173 174 9.631452 CGGCCTATCACATATATATAATGAGTG 57.369 37.037 0.00 11.30 0.00 3.51
174 175 8.807118 CCGGCCTATCACATATATATAATGAGT 58.193 37.037 0.00 2.17 0.00 3.41
175 176 8.807118 ACCGGCCTATCACATATATATAATGAG 58.193 37.037 0.00 5.38 0.00 2.90
176 177 8.721133 ACCGGCCTATCACATATATATAATGA 57.279 34.615 0.00 10.79 0.00 2.57
177 178 9.424319 GAACCGGCCTATCACATATATATAATG 57.576 37.037 0.00 0.00 0.00 1.90
178 179 8.594550 GGAACCGGCCTATCACATATATATAAT 58.405 37.037 0.00 0.00 0.00 1.28
179 180 7.015877 GGGAACCGGCCTATCACATATATATAA 59.984 40.741 0.00 0.00 40.86 0.98
180 181 6.495872 GGGAACCGGCCTATCACATATATATA 59.504 42.308 0.00 0.00 40.86 0.86
181 182 5.307196 GGGAACCGGCCTATCACATATATAT 59.693 44.000 0.00 0.00 40.86 0.86
182 183 4.652421 GGGAACCGGCCTATCACATATATA 59.348 45.833 0.00 0.00 40.86 0.86
183 184 3.454812 GGGAACCGGCCTATCACATATAT 59.545 47.826 0.00 0.00 40.86 0.86
184 185 2.835764 GGGAACCGGCCTATCACATATA 59.164 50.000 0.00 0.00 40.86 0.86
185 186 1.628846 GGGAACCGGCCTATCACATAT 59.371 52.381 0.00 0.00 40.86 1.78
186 187 1.053424 GGGAACCGGCCTATCACATA 58.947 55.000 0.00 0.00 40.86 2.29
187 188 1.837090 GGGAACCGGCCTATCACAT 59.163 57.895 0.00 0.00 40.86 3.21
188 189 3.316029 GGGAACCGGCCTATCACA 58.684 61.111 0.00 0.00 40.86 3.58
200 201 3.762288 GAGACAATAGGTTTTGGGGGAAC 59.238 47.826 0.00 0.00 0.00 3.62
201 202 3.399644 TGAGACAATAGGTTTTGGGGGAA 59.600 43.478 0.00 0.00 0.00 3.97
202 203 2.990284 TGAGACAATAGGTTTTGGGGGA 59.010 45.455 0.00 0.00 0.00 4.81
203 204 3.089284 GTGAGACAATAGGTTTTGGGGG 58.911 50.000 0.00 0.00 0.00 5.40
204 205 3.506067 GTGTGAGACAATAGGTTTTGGGG 59.494 47.826 0.00 0.00 0.00 4.96
205 206 4.398319 AGTGTGAGACAATAGGTTTTGGG 58.602 43.478 0.00 0.00 0.00 4.12
206 207 6.403636 GCATAGTGTGAGACAATAGGTTTTGG 60.404 42.308 0.00 0.00 33.67 3.28
207 208 6.149308 TGCATAGTGTGAGACAATAGGTTTTG 59.851 38.462 0.00 0.00 33.67 2.44
208 209 6.237901 TGCATAGTGTGAGACAATAGGTTTT 58.762 36.000 0.00 0.00 33.67 2.43
209 210 5.804639 TGCATAGTGTGAGACAATAGGTTT 58.195 37.500 0.00 0.00 33.67 3.27
210 211 5.420725 TGCATAGTGTGAGACAATAGGTT 57.579 39.130 0.00 0.00 33.67 3.50
211 212 5.046304 ACTTGCATAGTGTGAGACAATAGGT 60.046 40.000 0.00 0.00 33.67 3.08
212 213 5.423015 ACTTGCATAGTGTGAGACAATAGG 58.577 41.667 0.00 0.00 34.17 2.57
225 226 0.734889 GCATTCCGCACTTGCATAGT 59.265 50.000 1.48 0.00 42.21 2.12
254 255 4.556898 CGGTTCCGACGATAGAATCTGAAT 60.557 45.833 5.19 0.00 41.38 2.57
257 258 2.289820 TCGGTTCCGACGATAGAATCTG 59.710 50.000 10.00 0.00 41.38 2.90
306 307 1.492319 TTGCGTCGTGTTTTCCGAGG 61.492 55.000 0.00 0.00 41.63 4.63
318 319 2.602217 GCAGCCCTTTTATATTGCGTCG 60.602 50.000 0.00 0.00 0.00 5.12
320 321 2.374184 TGCAGCCCTTTTATATTGCGT 58.626 42.857 0.00 0.00 34.44 5.24
441 442 2.436173 TGGTAATATGCGTCATGACCCA 59.564 45.455 20.03 17.60 0.00 4.51
503 504 2.046314 ATCGTGGAAGGGGCAACG 60.046 61.111 0.00 0.00 37.38 4.10
504 505 1.749258 GGATCGTGGAAGGGGCAAC 60.749 63.158 0.00 0.00 0.00 4.17
505 506 2.674754 GGATCGTGGAAGGGGCAA 59.325 61.111 0.00 0.00 0.00 4.52
506 507 3.407967 GGGATCGTGGAAGGGGCA 61.408 66.667 0.00 0.00 0.00 5.36
507 508 4.547367 CGGGATCGTGGAAGGGGC 62.547 72.222 0.00 0.00 0.00 5.80
517 518 0.648958 GCGGTTTTAGAACGGGATCG 59.351 55.000 5.95 0.00 43.02 3.69
518 519 1.729284 TGCGGTTTTAGAACGGGATC 58.271 50.000 5.95 0.00 36.80 3.36
519 520 2.188062 TTGCGGTTTTAGAACGGGAT 57.812 45.000 5.95 0.00 36.58 3.85
520 521 1.807742 CATTGCGGTTTTAGAACGGGA 59.192 47.619 5.95 0.43 36.80 5.14
533 534 4.096231 TGTGGATTGACTATTTCATTGCGG 59.904 41.667 0.00 0.00 32.84 5.69
535 536 6.032094 CAGTGTGGATTGACTATTTCATTGC 58.968 40.000 0.00 0.00 32.84 3.56
537 538 8.408043 TTTCAGTGTGGATTGACTATTTCATT 57.592 30.769 0.00 0.00 32.84 2.57
603 616 0.601841 AAAATTGTGCTGGCTGCTGC 60.602 50.000 17.45 7.10 43.37 5.25
638 651 0.865769 ATCGTGTTGCGTTTGACTCC 59.134 50.000 0.00 0.00 42.13 3.85
655 668 1.281960 GCTGCGATGACATGGCATC 59.718 57.895 28.75 28.75 43.06 3.91
659 672 1.773054 GCTCTGCTGCGATGACATGG 61.773 60.000 0.00 0.00 0.00 3.66
704 717 1.748493 CTCTTTCTCTCTCTCGTGGGG 59.252 57.143 0.00 0.00 0.00 4.96
708 721 4.019681 TCCTTCTCTCTTTCTCTCTCTCGT 60.020 45.833 0.00 0.00 0.00 4.18
710 723 7.122650 TCAATTCCTTCTCTCTTTCTCTCTCTC 59.877 40.741 0.00 0.00 0.00 3.20
712 725 7.169158 TCAATTCCTTCTCTCTTTCTCTCTC 57.831 40.000 0.00 0.00 0.00 3.20
713 726 6.155049 CCTCAATTCCTTCTCTCTTTCTCTCT 59.845 42.308 0.00 0.00 0.00 3.10
714 727 6.070824 ACCTCAATTCCTTCTCTCTTTCTCTC 60.071 42.308 0.00 0.00 0.00 3.20
715 728 5.784906 ACCTCAATTCCTTCTCTCTTTCTCT 59.215 40.000 0.00 0.00 0.00 3.10
716 729 6.048732 ACCTCAATTCCTTCTCTCTTTCTC 57.951 41.667 0.00 0.00 0.00 2.87
717 730 5.337169 CGACCTCAATTCCTTCTCTCTTTCT 60.337 44.000 0.00 0.00 0.00 2.52
718 731 4.867608 CGACCTCAATTCCTTCTCTCTTTC 59.132 45.833 0.00 0.00 0.00 2.62
719 732 4.826556 CGACCTCAATTCCTTCTCTCTTT 58.173 43.478 0.00 0.00 0.00 2.52
720 733 3.368948 GCGACCTCAATTCCTTCTCTCTT 60.369 47.826 0.00 0.00 0.00 2.85
725 738 0.741221 GCGCGACCTCAATTCCTTCT 60.741 55.000 12.10 0.00 0.00 2.85
728 741 2.125106 GGCGCGACCTCAATTCCT 60.125 61.111 12.10 0.00 34.51 3.36
739 752 1.202256 CGGCAGAATATATAGGCGCGA 60.202 52.381 12.10 0.00 42.84 5.87
840 865 1.996191 CGCGGGAGAAAGAGAGAAAAG 59.004 52.381 0.00 0.00 0.00 2.27
841 866 1.939838 GCGCGGGAGAAAGAGAGAAAA 60.940 52.381 8.83 0.00 0.00 2.29
845 870 2.580867 CGCGCGGGAGAAAGAGAG 60.581 66.667 24.84 0.00 0.00 3.20
846 871 3.060000 TCGCGCGGGAGAAAGAGA 61.060 61.111 31.69 2.53 0.00 3.10
1305 1347 1.376812 GAAGCCCTTGTACACGGGG 60.377 63.158 32.32 27.11 40.06 5.73
1445 1487 4.671687 AGATTAATGGATGGATGAGGGGTT 59.328 41.667 0.00 0.00 0.00 4.11
1448 1490 6.137104 AGAAGATTAATGGATGGATGAGGG 57.863 41.667 0.00 0.00 0.00 4.30
1505 1551 3.371702 CCACTACTGCTACTCCTCTACCA 60.372 52.174 0.00 0.00 0.00 3.25
1519 1565 0.248907 CCGTCCGCATACCACTACTG 60.249 60.000 0.00 0.00 0.00 2.74
1520 1566 2.012902 GCCGTCCGCATACCACTACT 62.013 60.000 0.00 0.00 37.47 2.57
1523 1569 3.075005 AGCCGTCCGCATACCACT 61.075 61.111 0.00 0.00 41.38 4.00
1548 1594 9.409839 TCTTCCAAGAAAAGCTACTCCAGCTAG 62.410 44.444 0.00 0.00 45.62 3.42
1549 1595 7.707751 TCTTCCAAGAAAAGCTACTCCAGCTA 61.708 42.308 0.00 0.00 45.62 3.32
1582 1628 5.078411 AGGCCATCGATGTCAGATATAAC 57.922 43.478 23.27 0.00 0.00 1.89
1616 1662 1.451936 CTATTCCCTCCCCCAAGCG 59.548 63.158 0.00 0.00 0.00 4.68
1775 1833 2.159627 CCTGCAACGGTGTAGCTTTTAG 59.840 50.000 13.69 0.00 36.24 1.85
1785 1843 0.804989 GGAGAATTCCTGCAACGGTG 59.195 55.000 0.00 0.00 40.58 4.94
1954 2015 4.377897 TCCTGAAAGAAACCTCGAACTTC 58.622 43.478 0.00 0.00 34.07 3.01
1964 2026 8.341892 ACCAAGAATATTCTCCTGAAAGAAAC 57.658 34.615 18.19 0.00 38.69 2.78
1972 2034 7.106239 ACTGTGTAACCAAGAATATTCTCCTG 58.894 38.462 18.19 13.26 33.43 3.86
2101 2169 8.975295 ACAGAGGGAGTAGTTATTAATTAACGT 58.025 33.333 0.00 0.00 44.15 3.99
2111 2179 8.877195 TCTTTTGTTTACAGAGGGAGTAGTTAT 58.123 33.333 0.00 0.00 0.00 1.89
2118 2186 4.389374 TGCTCTTTTGTTTACAGAGGGAG 58.611 43.478 0.00 0.00 35.51 4.30
2119 2187 4.431416 TGCTCTTTTGTTTACAGAGGGA 57.569 40.909 0.00 0.00 35.51 4.20
2120 2188 5.712152 AATGCTCTTTTGTTTACAGAGGG 57.288 39.130 0.00 0.00 35.51 4.30
2121 2189 8.099364 TCTAAATGCTCTTTTGTTTACAGAGG 57.901 34.615 0.00 0.00 35.51 3.69
2144 2212 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
2145 2213 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
2146 2214 9.733219 GAGCGTTTAGATCACTACTTTAGTAAT 57.267 33.333 0.00 0.00 37.23 1.89
2147 2215 8.186821 GGAGCGTTTAGATCACTACTTTAGTAA 58.813 37.037 0.00 0.00 36.76 2.24
2148 2216 7.555554 AGGAGCGTTTAGATCACTACTTTAGTA 59.444 37.037 0.00 0.00 36.76 1.82
2149 2217 6.377712 AGGAGCGTTTAGATCACTACTTTAGT 59.622 38.462 0.00 0.00 40.28 2.24
2150 2218 6.797454 AGGAGCGTTTAGATCACTACTTTAG 58.203 40.000 0.00 0.00 36.90 1.85
2151 2219 6.770746 AGGAGCGTTTAGATCACTACTTTA 57.229 37.500 0.00 0.00 36.90 1.85
2152 2220 5.662674 AGGAGCGTTTAGATCACTACTTT 57.337 39.130 0.00 0.00 36.90 2.66
2153 2221 6.963083 ATAGGAGCGTTTAGATCACTACTT 57.037 37.500 0.00 0.00 36.90 2.24
2154 2222 8.638629 AATATAGGAGCGTTTAGATCACTACT 57.361 34.615 0.00 0.00 36.90 2.57
2155 2223 9.991388 CTAATATAGGAGCGTTTAGATCACTAC 57.009 37.037 0.00 0.00 36.90 2.73
2156 2224 9.736414 ACTAATATAGGAGCGTTTAGATCACTA 57.264 33.333 0.00 0.00 36.90 2.74
2157 2225 8.638629 ACTAATATAGGAGCGTTTAGATCACT 57.361 34.615 0.00 0.00 36.90 3.41
2158 2226 9.694137 AAACTAATATAGGAGCGTTTAGATCAC 57.306 33.333 0.00 0.00 36.90 3.06
2161 2229 9.837525 CGTAAACTAATATAGGAGCGTTTAGAT 57.162 33.333 0.00 0.00 30.36 1.98
2162 2230 8.292448 CCGTAAACTAATATAGGAGCGTTTAGA 58.708 37.037 0.00 0.00 30.36 2.10
2163 2231 8.292448 TCCGTAAACTAATATAGGAGCGTTTAG 58.708 37.037 0.00 0.00 30.36 1.85
2164 2232 8.165239 TCCGTAAACTAATATAGGAGCGTTTA 57.835 34.615 0.00 0.00 0.00 2.01
2165 2233 7.042797 TCCGTAAACTAATATAGGAGCGTTT 57.957 36.000 0.00 0.00 0.00 3.60
2166 2234 6.294397 CCTCCGTAAACTAATATAGGAGCGTT 60.294 42.308 3.27 0.00 41.62 4.84
2167 2235 5.182760 CCTCCGTAAACTAATATAGGAGCGT 59.817 44.000 3.27 0.00 41.62 5.07
2168 2236 5.392811 CCCTCCGTAAACTAATATAGGAGCG 60.393 48.000 3.27 0.00 41.62 5.03
2169 2237 5.713861 TCCCTCCGTAAACTAATATAGGAGC 59.286 44.000 3.27 0.00 41.62 4.70
2170 2238 6.947158 ACTCCCTCCGTAAACTAATATAGGAG 59.053 42.308 0.00 0.00 42.36 3.69
2171 2239 6.856757 ACTCCCTCCGTAAACTAATATAGGA 58.143 40.000 0.00 0.00 0.00 2.94
2172 2240 8.820153 ATACTCCCTCCGTAAACTAATATAGG 57.180 38.462 0.00 0.00 0.00 2.57
2173 2241 9.458727 TGATACTCCCTCCGTAAACTAATATAG 57.541 37.037 0.00 0.00 0.00 1.31
2174 2242 9.812347 TTGATACTCCCTCCGTAAACTAATATA 57.188 33.333 0.00 0.00 0.00 0.86
2175 2243 8.583296 GTTGATACTCCCTCCGTAAACTAATAT 58.417 37.037 0.00 0.00 0.00 1.28
2176 2244 7.014615 GGTTGATACTCCCTCCGTAAACTAATA 59.985 40.741 0.00 0.00 0.00 0.98
2177 2245 6.183360 GGTTGATACTCCCTCCGTAAACTAAT 60.183 42.308 0.00 0.00 0.00 1.73
2178 2246 5.127682 GGTTGATACTCCCTCCGTAAACTAA 59.872 44.000 0.00 0.00 0.00 2.24
2179 2247 4.646492 GGTTGATACTCCCTCCGTAAACTA 59.354 45.833 0.00 0.00 0.00 2.24
2180 2248 3.450096 GGTTGATACTCCCTCCGTAAACT 59.550 47.826 0.00 0.00 0.00 2.66
2181 2249 3.196254 TGGTTGATACTCCCTCCGTAAAC 59.804 47.826 0.00 0.00 0.00 2.01
2182 2250 3.443052 TGGTTGATACTCCCTCCGTAAA 58.557 45.455 0.00 0.00 0.00 2.01
2183 2251 3.104519 TGGTTGATACTCCCTCCGTAA 57.895 47.619 0.00 0.00 0.00 3.18
2184 2252 2.832643 TGGTTGATACTCCCTCCGTA 57.167 50.000 0.00 0.00 0.00 4.02
2185 2253 1.831736 CTTGGTTGATACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
2186 2254 1.831736 ACTTGGTTGATACTCCCTCCG 59.168 52.381 0.00 0.00 0.00 4.63
2187 2255 2.838202 TCACTTGGTTGATACTCCCTCC 59.162 50.000 0.00 0.00 0.00 4.30
2188 2256 3.515901 AGTCACTTGGTTGATACTCCCTC 59.484 47.826 0.00 0.00 0.00 4.30
2189 2257 3.521727 AGTCACTTGGTTGATACTCCCT 58.478 45.455 0.00 0.00 0.00 4.20
2190 2258 3.983044 AGTCACTTGGTTGATACTCCC 57.017 47.619 0.00 0.00 0.00 4.30
2191 2259 5.179555 GTGAAAGTCACTTGGTTGATACTCC 59.820 44.000 0.00 0.00 43.73 3.85
2192 2260 6.229561 GTGAAAGTCACTTGGTTGATACTC 57.770 41.667 0.00 0.00 43.73 2.59
2244 2312 6.723298 TTGGTTTATGTGTGGTTGAGAATT 57.277 33.333 0.00 0.00 0.00 2.17
2298 2366 0.788391 GCGCCGAGATATTTTACGGG 59.212 55.000 0.00 0.00 44.61 5.28
2340 2408 2.115266 CACCGGTTTTCCTGGCCT 59.885 61.111 2.97 0.00 37.22 5.19
2468 2549 6.536941 ACGAGCAAATTAAACAACAACCAATT 59.463 30.769 0.00 0.00 0.00 2.32
2469 2550 6.019156 CACGAGCAAATTAAACAACAACCAAT 60.019 34.615 0.00 0.00 0.00 3.16
2470 2551 5.289675 CACGAGCAAATTAAACAACAACCAA 59.710 36.000 0.00 0.00 0.00 3.67
2471 2552 4.800993 CACGAGCAAATTAAACAACAACCA 59.199 37.500 0.00 0.00 0.00 3.67
2472 2553 4.317769 GCACGAGCAAATTAAACAACAACC 60.318 41.667 0.00 0.00 41.58 3.77
2473 2554 4.602957 CGCACGAGCAAATTAAACAACAAC 60.603 41.667 5.50 0.00 42.27 3.32
2474 2555 3.483922 CGCACGAGCAAATTAAACAACAA 59.516 39.130 5.50 0.00 42.27 2.83
2475 2556 3.039405 CGCACGAGCAAATTAAACAACA 58.961 40.909 5.50 0.00 42.27 3.33
2508 2589 1.988982 GCCCCAGGAAGATCACCTCC 61.989 65.000 8.25 4.75 35.35 4.30
2670 2751 4.454847 TCGACTGAGATTTAACGAGACTGT 59.545 41.667 0.00 0.00 0.00 3.55
2679 2761 6.312918 GCATAACCAAGTCGACTGAGATTTAA 59.687 38.462 20.85 0.72 0.00 1.52
2692 2774 0.746659 GCATGGGGCATAACCAAGTC 59.253 55.000 0.00 0.00 42.17 3.01
2704 2786 3.961480 TCTGTCGAATATAGCATGGGG 57.039 47.619 0.00 0.00 0.00 4.96
2705 2787 8.197439 TGTAATATCTGTCGAATATAGCATGGG 58.803 37.037 0.00 0.00 0.00 4.00
2706 2788 9.755804 ATGTAATATCTGTCGAATATAGCATGG 57.244 33.333 0.00 0.00 0.00 3.66
2715 2797 9.212641 CAATCCTCAATGTAATATCTGTCGAAT 57.787 33.333 0.00 0.00 0.00 3.34
2721 2803 7.500720 TGCACAATCCTCAATGTAATATCTG 57.499 36.000 0.00 0.00 0.00 2.90
2726 2808 8.851541 AAAAATTGCACAATCCTCAATGTAAT 57.148 26.923 0.00 0.00 31.53 1.89
2752 2834 1.996798 ACCAAGTCTCGGTCAAGAGA 58.003 50.000 0.00 0.00 44.23 3.10
2753 2835 2.821991 AACCAAGTCTCGGTCAAGAG 57.178 50.000 0.00 0.00 34.99 2.85
2755 2837 3.741344 CACTTAACCAAGTCTCGGTCAAG 59.259 47.826 0.00 0.00 43.30 3.02
2756 2838 3.133362 ACACTTAACCAAGTCTCGGTCAA 59.867 43.478 0.00 0.00 43.30 3.18
2757 2839 2.696707 ACACTTAACCAAGTCTCGGTCA 59.303 45.455 0.00 0.00 43.30 4.02
2758 2840 3.243636 TGACACTTAACCAAGTCTCGGTC 60.244 47.826 0.00 0.00 43.30 4.79
2759 2841 2.696707 TGACACTTAACCAAGTCTCGGT 59.303 45.455 0.00 0.00 43.30 4.69
2760 2842 3.318017 CTGACACTTAACCAAGTCTCGG 58.682 50.000 0.00 0.00 43.30 4.63
2761 2843 2.731976 GCTGACACTTAACCAAGTCTCG 59.268 50.000 0.00 0.00 43.30 4.04
2763 2845 2.438021 TGGCTGACACTTAACCAAGTCT 59.562 45.455 0.00 0.00 43.30 3.24
2764 2846 2.548480 GTGGCTGACACTTAACCAAGTC 59.452 50.000 6.34 0.00 43.30 3.01
2765 2847 2.572290 GTGGCTGACACTTAACCAAGT 58.428 47.619 6.34 0.00 46.15 3.16
2777 2870 2.271944 AGTAAAAGGGTGTGGCTGAC 57.728 50.000 0.00 0.00 0.00 3.51
2780 2873 1.133482 AGCAAGTAAAAGGGTGTGGCT 60.133 47.619 0.00 0.00 0.00 4.75
2783 2876 1.956477 AGCAGCAAGTAAAAGGGTGTG 59.044 47.619 0.00 0.00 32.89 3.82
2866 2960 1.550524 CCACAGCTAGCAGACTACCAA 59.449 52.381 18.83 0.00 0.00 3.67
2947 3041 3.056313 GCAGCTGGTTTCCATCCGC 62.056 63.158 17.12 0.00 30.82 5.54
2965 3059 4.276678 TGCTGACAGACTTTTGAATTCAGG 59.723 41.667 6.65 6.00 31.55 3.86
2979 3073 1.985473 ATTGCCAACTTGCTGACAGA 58.015 45.000 6.65 0.00 0.00 3.41
2981 3075 1.538634 GCAATTGCCAACTTGCTGACA 60.539 47.619 20.06 0.00 43.41 3.58
2998 3092 8.093307 TGCATCTGTAATTTAAAATTCTGGCAA 58.907 29.630 0.00 0.00 0.00 4.52
3003 3097 9.143631 GCAACTGCATCTGTAATTTAAAATTCT 57.856 29.630 0.00 0.00 41.59 2.40
3048 3144 1.860676 AAACGTTGCGAGTTAGCTGA 58.139 45.000 0.00 0.00 38.13 4.26
3146 3244 1.533033 TTCTGACCAGCGACCTCCA 60.533 57.895 0.00 0.00 0.00 3.86
3147 3245 1.079750 GTTCTGACCAGCGACCTCC 60.080 63.158 0.00 0.00 0.00 4.30
3254 3352 4.282957 GGAGATCAATCAGTGAGGCTATGA 59.717 45.833 0.00 0.00 40.43 2.15
3256 3354 4.491675 AGGAGATCAATCAGTGAGGCTAT 58.508 43.478 0.00 0.00 40.43 2.97
3257 3355 3.894427 GAGGAGATCAATCAGTGAGGCTA 59.106 47.826 0.00 0.00 40.43 3.93
3298 3396 2.452105 GTCAACGCGTTAGGAGATCTC 58.548 52.381 26.11 14.75 0.00 2.75
3321 3419 3.967332 ACATTTTTCTGAATGCAGGGG 57.033 42.857 0.00 0.00 42.53 4.79
3328 3426 7.359264 CGAGACTGTTCGTACATTTTTCTGAAT 60.359 37.037 0.00 0.00 35.91 2.57
3342 3440 1.805345 CCTACTGTCGAGACTGTTCGT 59.195 52.381 18.26 5.05 42.30 3.85
3343 3441 1.466024 GCCTACTGTCGAGACTGTTCG 60.466 57.143 18.26 11.17 42.30 3.95
3344 3442 1.466024 CGCCTACTGTCGAGACTGTTC 60.466 57.143 18.26 9.27 42.30 3.18
3372 3470 3.121738 TGCCGACAGAGATCTCGTATA 57.878 47.619 16.97 0.00 34.09 1.47
3493 3591 6.698329 AGACATCACACACACAAAAATCATTG 59.302 34.615 0.00 0.00 36.37 2.82
3660 3764 4.787280 CCGGAGAGGGGGCTCACT 62.787 72.222 0.00 0.00 36.62 3.41
3669 3773 3.160047 ATGAGCAGGCCGGAGAGG 61.160 66.667 5.05 0.00 44.97 3.69
3693 3797 5.997746 AGCAACTTAGCTTCATTTAGTGTGA 59.002 36.000 0.00 0.00 43.70 3.58
3694 3798 6.073058 TGAGCAACTTAGCTTCATTTAGTGTG 60.073 38.462 0.00 0.00 46.75 3.82
3697 3801 6.656693 ACATGAGCAACTTAGCTTCATTTAGT 59.343 34.615 0.00 0.00 46.75 2.24
3699 3803 7.452880 AACATGAGCAACTTAGCTTCATTTA 57.547 32.000 0.00 0.00 46.75 1.40
3727 3848 2.579787 CACGCAGACGGATCGACC 60.580 66.667 0.00 0.00 46.04 4.79
3738 3860 1.864862 CTTCTTGTCCTGCACGCAG 59.135 57.895 12.17 12.17 43.26 5.18
3741 3863 2.671177 CGGCTTCTTGTCCTGCACG 61.671 63.158 0.00 0.00 0.00 5.34
4237 4361 4.214327 CTCCTTCTCCTCCGCCGC 62.214 72.222 0.00 0.00 0.00 6.53
4238 4362 2.440430 TCTCCTTCTCCTCCGCCG 60.440 66.667 0.00 0.00 0.00 6.46
4239 4363 2.131067 CCTCTCCTTCTCCTCCGCC 61.131 68.421 0.00 0.00 0.00 6.13
4323 4447 3.951769 CTTCCTGGGGCTGCCCTTG 62.952 68.421 34.99 25.94 44.66 3.61
4456 4580 6.204688 CACCTCTCTCTCTCTCATATGTACAC 59.795 46.154 0.00 0.00 0.00 2.90
4515 4659 1.854227 GTAGAACTACAGGGATGCGC 58.146 55.000 0.00 0.00 36.15 6.09
4551 4695 7.021196 GCAAAAGAAAACCAAAGAGAAAAACC 58.979 34.615 0.00 0.00 0.00 3.27
4586 4735 4.498241 TGCATCTCACTGTAAGCACTTAG 58.502 43.478 0.00 0.00 37.60 2.18
4624 5637 6.702282 GGTACTCTTGTTTGATATAGCTCCAC 59.298 42.308 0.00 0.00 0.00 4.02
4663 5676 1.611491 ACATGCGACCAAATTTCCGTT 59.389 42.857 0.00 0.00 0.00 4.44
4678 5691 4.082354 AGCTTCAATCCAAGAAGAACATGC 60.082 41.667 7.08 0.00 44.00 4.06
4686 5699 4.265904 TGTCGTAGCTTCAATCCAAGAA 57.734 40.909 0.00 0.00 0.00 2.52
4700 5717 2.090658 GTGAACACTCGCATTGTCGTAG 59.909 50.000 0.00 0.00 31.98 3.51
4721 5738 2.679837 GACACCCATGCATACTGAACAG 59.320 50.000 0.00 0.00 0.00 3.16
4723 5740 2.710377 TGACACCCATGCATACTGAAC 58.290 47.619 0.00 0.00 0.00 3.18
4724 5741 3.431673 TTGACACCCATGCATACTGAA 57.568 42.857 0.00 0.00 0.00 3.02
4725 5742 3.544684 GATTGACACCCATGCATACTGA 58.455 45.455 0.00 0.00 0.00 3.41
4726 5743 2.288729 CGATTGACACCCATGCATACTG 59.711 50.000 0.00 0.00 0.00 2.74
4727 5744 2.564771 CGATTGACACCCATGCATACT 58.435 47.619 0.00 0.00 0.00 2.12
4728 5745 1.603802 CCGATTGACACCCATGCATAC 59.396 52.381 0.00 0.00 0.00 2.39
4729 5746 1.211703 ACCGATTGACACCCATGCATA 59.788 47.619 0.00 0.00 0.00 3.14
4730 5747 0.034186 ACCGATTGACACCCATGCAT 60.034 50.000 0.00 0.00 0.00 3.96
4731 5748 0.959867 CACCGATTGACACCCATGCA 60.960 55.000 0.00 0.00 0.00 3.96
4732 5749 0.960364 ACACCGATTGACACCCATGC 60.960 55.000 0.00 0.00 0.00 4.06
4733 5750 1.533625 AACACCGATTGACACCCATG 58.466 50.000 0.00 0.00 0.00 3.66
4754 5771 5.661759 AGACCGATTGTTTCCTAGGTTATCT 59.338 40.000 9.08 0.00 31.35 1.98
4770 5787 3.002451 CGAGATCACGTAGAAGACCGATT 59.998 47.826 4.22 0.00 0.00 3.34
4783 5800 1.871039 ACAACCAAAACCGAGATCACG 59.129 47.619 5.49 5.49 0.00 4.35
4792 5809 3.196901 ACCTCCTCAAAACAACCAAAACC 59.803 43.478 0.00 0.00 0.00 3.27
4809 5826 1.481871 TCGGACAAGATACCACCTCC 58.518 55.000 0.00 0.00 0.00 4.30
4812 5829 3.671716 AGTTTTCGGACAAGATACCACC 58.328 45.455 0.00 0.00 0.00 4.61
4851 5868 9.658799 GCTAGTGGATGTGTATATATTGATGTT 57.341 33.333 0.00 0.00 0.00 2.71
4875 5892 3.827008 ACAGACCACGATGATATTGCT 57.173 42.857 0.00 0.00 0.00 3.91
4889 5906 6.183359 CGTAGATGTAGAAAAACGAACAGACC 60.183 42.308 0.00 0.00 32.35 3.85
4894 5911 4.624452 AGGCGTAGATGTAGAAAAACGAAC 59.376 41.667 0.00 0.00 32.35 3.95
4897 5914 3.241995 GCAGGCGTAGATGTAGAAAAACG 60.242 47.826 0.00 0.00 0.00 3.60
4906 5923 0.541392 TTCATGGCAGGCGTAGATGT 59.459 50.000 0.00 0.00 0.00 3.06
4910 5927 0.176680 AGTCTTCATGGCAGGCGTAG 59.823 55.000 0.00 0.00 0.00 3.51
4916 5933 3.063510 TCTTGGAAGTCTTCATGGCAG 57.936 47.619 14.49 2.90 0.00 4.85
4980 5997 1.539065 CGGATCAGGATCTCCCAAACG 60.539 57.143 9.01 0.00 37.92 3.60
5047 6064 2.027073 TCGGATATGATTGCGCGCC 61.027 57.895 30.77 14.34 0.00 6.53
5055 6073 3.587498 TGAAGAAGGGGTCGGATATGAT 58.413 45.455 0.00 0.00 0.00 2.45
5069 6087 2.670414 GAGGTGCGACTGAATGAAGAAG 59.330 50.000 0.00 0.00 0.00 2.85
5071 6089 1.066858 GGAGGTGCGACTGAATGAAGA 60.067 52.381 0.00 0.00 0.00 2.87
5144 6162 1.135774 TCGATGAAACGGTCGAGACAG 60.136 52.381 5.55 3.72 41.44 3.51
5157 6175 1.404181 CCAGTTCTCGCCTTCGATGAA 60.404 52.381 0.00 0.00 44.56 2.57
5180 6198 1.376553 GCTGCTGGAGAAGGTGGTC 60.377 63.158 0.00 0.00 0.00 4.02
5282 7123 2.103042 GCAGTGGGCGAAGTAGCAG 61.103 63.158 0.00 0.00 39.27 4.24
5349 7206 4.394712 GACGTCCCTGGTGGCTGG 62.395 72.222 3.51 0.00 0.00 4.85
5350 7207 4.742201 CGACGTCCCTGGTGGCTG 62.742 72.222 10.58 0.00 0.00 4.85
5352 7209 4.736896 GACGACGTCCCTGGTGGC 62.737 72.222 17.25 0.00 0.00 5.01
5353 7210 3.299977 TGACGACGTCCCTGGTGG 61.300 66.667 24.33 0.00 0.00 4.61
5354 7211 2.049433 GTGACGACGTCCCTGGTG 60.049 66.667 24.33 0.00 0.00 4.17
5355 7212 3.667282 CGTGACGACGTCCCTGGT 61.667 66.667 24.33 1.14 40.91 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.