Multiple sequence alignment - TraesCS2D01G177900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G177900 chr2D 100.000 3714 0 0 1 3714 121357107 121353394 0.000000e+00 6859.0
1 TraesCS2D01G177900 chr2D 80.229 875 117 27 1832 2689 121060874 121060039 1.140000e-169 606.0
2 TraesCS2D01G177900 chr2D 85.208 480 46 17 999 1464 121061622 121061154 1.560000e-128 470.0
3 TraesCS2D01G177900 chr2A 93.195 1014 57 5 1818 2822 125458887 125457877 0.000000e+00 1480.0
4 TraesCS2D01G177900 chr2A 91.901 568 31 5 1233 1789 125459448 125458885 0.000000e+00 780.0
5 TraesCS2D01G177900 chr2A 78.158 1053 162 37 1642 2689 125252507 125251518 3.170000e-170 608.0
6 TraesCS2D01G177900 chr2A 83.884 484 46 18 999 1467 125253072 125252606 2.050000e-117 433.0
7 TraesCS2D01G177900 chr2A 82.993 441 31 18 598 1028 125460396 125459990 3.530000e-95 359.0
8 TraesCS2D01G177900 chr2A 85.039 254 19 6 2664 2906 125456522 125456277 1.330000e-59 241.0
9 TraesCS2D01G177900 chr2B 90.446 1120 66 24 1832 2949 174663514 174662434 0.000000e+00 1437.0
10 TraesCS2D01G177900 chr2B 84.721 949 68 38 629 1536 174664547 174663635 0.000000e+00 878.0
11 TraesCS2D01G177900 chr2B 81.818 1056 146 31 1644 2689 174593140 174592121 0.000000e+00 845.0
12 TraesCS2D01G177900 chr2B 84.375 480 50 17 999 1464 174593685 174593217 7.320000e-122 448.0
13 TraesCS2D01G177900 chr2B 84.878 410 51 4 2942 3340 174661630 174661221 1.610000e-108 403.0
14 TraesCS2D01G177900 chr2B 92.778 180 13 0 3340 3519 174661188 174661009 1.020000e-65 261.0
15 TraesCS2D01G177900 chr2B 90.741 108 10 0 305 412 174664657 174664550 1.080000e-30 145.0
16 TraesCS2D01G177900 chr2B 83.117 154 22 2 148 301 174664848 174664699 1.800000e-28 137.0
17 TraesCS2D01G177900 chrUn 90.404 198 17 2 3518 3714 105424188 105423992 3.680000e-65 259.0
18 TraesCS2D01G177900 chrUn 80.000 150 27 2 447 594 276640576 276640428 1.410000e-19 108.0
19 TraesCS2D01G177900 chr7B 89.500 200 15 3 3521 3714 565986493 565986294 7.970000e-62 248.0
20 TraesCS2D01G177900 chr4B 89.175 194 18 2 3521 3714 367084878 367084688 4.790000e-59 239.0
21 TraesCS2D01G177900 chr4B 77.922 154 31 2 447 597 562869523 562869370 3.950000e-15 93.5
22 TraesCS2D01G177900 chr6A 90.503 179 17 0 3536 3714 41667885 41668063 1.720000e-58 237.0
23 TraesCS2D01G177900 chr6D 88.442 199 18 1 3521 3714 254136235 254136037 6.200000e-58 235.0
24 TraesCS2D01G177900 chr5B 89.175 194 14 4 3521 3714 100403166 100403352 6.200000e-58 235.0
25 TraesCS2D01G177900 chr5B 88.119 202 15 7 3518 3713 407892475 407892673 8.020000e-57 231.0
26 TraesCS2D01G177900 chr5B 82.667 150 24 2 447 594 412662938 412662789 8.370000e-27 132.0
27 TraesCS2D01G177900 chr7D 88.889 189 21 0 3525 3713 439997388 439997200 2.230000e-57 233.0
28 TraesCS2D01G177900 chr6B 88.660 194 19 2 3521 3714 620905251 620905061 2.230000e-57 233.0
29 TraesCS2D01G177900 chr1D 81.333 150 26 1 447 594 463344303 463344452 1.810000e-23 121.0
30 TraesCS2D01G177900 chr3A 79.070 129 21 5 446 570 656388591 656388717 2.380000e-12 84.2
31 TraesCS2D01G177900 chr4D 100.000 29 0 0 3022 3050 172926059 172926087 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G177900 chr2D 121353394 121357107 3713 True 6859.0 6859 100.000000 1 3714 1 chr2D.!!$R1 3713
1 TraesCS2D01G177900 chr2D 121060039 121061622 1583 True 538.0 606 82.718500 999 2689 2 chr2D.!!$R2 1690
2 TraesCS2D01G177900 chr2A 125456277 125460396 4119 True 715.0 1480 88.282000 598 2906 4 chr2A.!!$R2 2308
3 TraesCS2D01G177900 chr2A 125251518 125253072 1554 True 520.5 608 81.021000 999 2689 2 chr2A.!!$R1 1690
4 TraesCS2D01G177900 chr2B 174592121 174593685 1564 True 646.5 845 83.096500 999 2689 2 chr2B.!!$R1 1690
5 TraesCS2D01G177900 chr2B 174661009 174664848 3839 True 543.5 1437 87.780167 148 3519 6 chr2B.!!$R2 3371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 541 0.035152 ATTGCTGCCAGTTCATCCGA 60.035 50.0 0.00 0.0 0.00 4.55 F
508 547 0.108804 GCCAGTTCATCCGAGTTCGA 60.109 55.0 2.59 0.0 43.02 3.71 F
1797 2276 0.033366 AAACTGAATTTGCACGCCCC 59.967 50.0 0.00 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 2257 0.033366 GGGGCGTGCAAATTCAGTTT 59.967 50.0 0.00 0.0 0.00 2.66 R
2222 2714 0.039074 CGACGAAGGTCTGCTTCTGT 60.039 55.0 0.00 0.0 41.16 3.41 R
3159 4512 0.032540 CTTTTCTTGCAAGCGGCCTT 59.967 50.0 21.99 0.0 43.89 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.185852 TGAGTCGACGTTATATTTGTCAGA 57.814 37.500 10.46 0.00 32.91 3.27
24 25 6.792326 TGAGTCGACGTTATATTTGTCAGAT 58.208 36.000 10.46 0.00 32.91 2.90
25 26 6.910972 TGAGTCGACGTTATATTTGTCAGATC 59.089 38.462 10.46 0.00 32.91 2.75
26 27 7.028926 AGTCGACGTTATATTTGTCAGATCT 57.971 36.000 10.46 0.00 32.91 2.75
27 28 7.133513 AGTCGACGTTATATTTGTCAGATCTC 58.866 38.462 10.46 0.00 32.91 2.75
28 29 6.910972 GTCGACGTTATATTTGTCAGATCTCA 59.089 38.462 0.00 0.00 32.91 3.27
29 30 6.910972 TCGACGTTATATTTGTCAGATCTCAC 59.089 38.462 0.00 0.00 32.91 3.51
30 31 6.691388 CGACGTTATATTTGTCAGATCTCACA 59.309 38.462 0.00 0.00 32.91 3.58
31 32 7.305475 CGACGTTATATTTGTCAGATCTCACAC 60.305 40.741 0.00 0.00 32.91 3.82
32 33 6.472486 ACGTTATATTTGTCAGATCTCACACG 59.528 38.462 0.00 0.26 0.00 4.49
33 34 6.074835 CGTTATATTTGTCAGATCTCACACGG 60.075 42.308 0.00 0.00 0.00 4.94
34 35 3.961480 ATTTGTCAGATCTCACACGGA 57.039 42.857 0.00 0.00 0.00 4.69
35 36 3.303881 TTTGTCAGATCTCACACGGAG 57.696 47.619 0.00 0.00 45.49 4.63
48 49 2.579207 CACGGAGATCGGTGTACAAT 57.421 50.000 11.25 0.00 44.45 2.71
49 50 2.888594 CACGGAGATCGGTGTACAATT 58.111 47.619 11.25 0.00 44.45 2.32
50 51 3.259064 CACGGAGATCGGTGTACAATTT 58.741 45.455 11.25 0.00 44.45 1.82
51 52 3.682858 CACGGAGATCGGTGTACAATTTT 59.317 43.478 11.25 0.00 44.45 1.82
52 53 4.153475 CACGGAGATCGGTGTACAATTTTT 59.847 41.667 11.25 0.00 44.45 1.94
96 97 8.757982 ATATGTTTTATCATTTGGCTGAGACT 57.242 30.769 0.00 0.00 0.00 3.24
97 98 6.899393 TGTTTTATCATTTGGCTGAGACTT 57.101 33.333 0.00 0.00 0.00 3.01
98 99 7.288810 TGTTTTATCATTTGGCTGAGACTTT 57.711 32.000 0.00 0.00 0.00 2.66
99 100 8.402798 TGTTTTATCATTTGGCTGAGACTTTA 57.597 30.769 0.00 0.00 0.00 1.85
100 101 9.023962 TGTTTTATCATTTGGCTGAGACTTTAT 57.976 29.630 0.00 0.00 0.00 1.40
101 102 9.860898 GTTTTATCATTTGGCTGAGACTTTATT 57.139 29.630 0.00 0.00 0.00 1.40
125 126 9.868277 ATTAAGTCTCAGTCAATTGAGTTCTAG 57.132 33.333 13.25 10.91 43.96 2.43
126 127 6.909550 AGTCTCAGTCAATTGAGTTCTAGT 57.090 37.500 13.25 2.17 43.96 2.57
127 128 6.919721 AGTCTCAGTCAATTGAGTTCTAGTC 58.080 40.000 13.25 8.93 43.96 2.59
128 129 6.491745 AGTCTCAGTCAATTGAGTTCTAGTCA 59.508 38.462 13.25 0.00 43.96 3.41
129 130 6.584563 GTCTCAGTCAATTGAGTTCTAGTCAC 59.415 42.308 13.25 3.88 43.96 3.67
130 131 6.265422 TCTCAGTCAATTGAGTTCTAGTCACA 59.735 38.462 13.25 0.00 43.96 3.58
131 132 6.216569 TCAGTCAATTGAGTTCTAGTCACAC 58.783 40.000 13.25 0.00 0.00 3.82
132 133 6.040955 TCAGTCAATTGAGTTCTAGTCACACT 59.959 38.462 13.25 0.00 0.00 3.55
133 134 6.364706 CAGTCAATTGAGTTCTAGTCACACTC 59.635 42.308 13.25 0.00 37.95 3.51
134 135 6.266558 AGTCAATTGAGTTCTAGTCACACTCT 59.733 38.462 8.80 0.00 38.24 3.24
135 136 6.926272 GTCAATTGAGTTCTAGTCACACTCTT 59.074 38.462 8.80 1.89 38.24 2.85
136 137 7.439655 GTCAATTGAGTTCTAGTCACACTCTTT 59.560 37.037 8.80 6.48 38.24 2.52
137 138 7.987458 TCAATTGAGTTCTAGTCACACTCTTTT 59.013 33.333 3.38 6.25 38.24 2.27
138 139 7.954788 ATTGAGTTCTAGTCACACTCTTTTC 57.045 36.000 12.29 0.00 38.24 2.29
139 140 6.465439 TGAGTTCTAGTCACACTCTTTTCA 57.535 37.500 12.29 0.00 38.24 2.69
140 141 6.507900 TGAGTTCTAGTCACACTCTTTTCAG 58.492 40.000 12.29 0.00 38.24 3.02
141 142 6.096987 TGAGTTCTAGTCACACTCTTTTCAGT 59.903 38.462 12.29 0.00 38.24 3.41
142 143 7.284716 TGAGTTCTAGTCACACTCTTTTCAGTA 59.715 37.037 12.29 0.00 38.24 2.74
143 144 8.008513 AGTTCTAGTCACACTCTTTTCAGTAA 57.991 34.615 0.00 0.00 0.00 2.24
144 145 8.643324 AGTTCTAGTCACACTCTTTTCAGTAAT 58.357 33.333 0.00 0.00 0.00 1.89
145 146 9.262358 GTTCTAGTCACACTCTTTTCAGTAATT 57.738 33.333 0.00 0.00 0.00 1.40
146 147 8.818141 TCTAGTCACACTCTTTTCAGTAATTG 57.182 34.615 0.00 0.00 0.00 2.32
153 154 7.227512 CACACTCTTTTCAGTAATTGGTTCTCT 59.772 37.037 0.00 0.00 0.00 3.10
161 162 8.463930 TTCAGTAATTGGTTCTCTGAACAAAT 57.536 30.769 11.75 9.39 39.27 2.32
162 163 8.099364 TCAGTAATTGGTTCTCTGAACAAATC 57.901 34.615 11.92 3.46 33.18 2.17
168 169 5.436175 TGGTTCTCTGAACAAATCTCACAA 58.564 37.500 11.75 0.00 0.00 3.33
177 178 5.473162 TGAACAAATCTCACAACATTCGGAT 59.527 36.000 0.00 0.00 0.00 4.18
179 180 7.174080 TGAACAAATCTCACAACATTCGGATAA 59.826 33.333 0.00 0.00 0.00 1.75
180 181 7.076842 ACAAATCTCACAACATTCGGATAAG 57.923 36.000 0.00 0.00 0.00 1.73
181 182 6.878923 ACAAATCTCACAACATTCGGATAAGA 59.121 34.615 0.00 0.00 0.00 2.10
182 183 6.910536 AATCTCACAACATTCGGATAAGAC 57.089 37.500 0.00 0.00 0.00 3.01
183 184 5.400066 TCTCACAACATTCGGATAAGACA 57.600 39.130 0.00 0.00 0.00 3.41
184 185 5.977635 TCTCACAACATTCGGATAAGACAT 58.022 37.500 0.00 0.00 0.00 3.06
186 187 7.726216 TCTCACAACATTCGGATAAGACATAT 58.274 34.615 0.00 0.00 0.00 1.78
187 188 7.653311 TCTCACAACATTCGGATAAGACATATG 59.347 37.037 0.00 0.00 0.00 1.78
190 191 7.439356 CACAACATTCGGATAAGACATATGAGT 59.561 37.037 10.38 0.00 0.00 3.41
191 192 8.638873 ACAACATTCGGATAAGACATATGAGTA 58.361 33.333 10.38 0.00 0.00 2.59
192 193 9.133627 CAACATTCGGATAAGACATATGAGTAG 57.866 37.037 10.38 0.00 0.00 2.57
193 194 8.637196 ACATTCGGATAAGACATATGAGTAGA 57.363 34.615 10.38 0.00 0.00 2.59
216 217 8.967552 AGAAGTAAAAGCTATCGATATTACCG 57.032 34.615 17.19 4.30 0.00 4.02
221 222 5.646577 AAGCTATCGATATTACCGAAGCT 57.353 39.130 5.40 7.40 44.21 3.74
233 234 2.433436 ACCGAAGCTTACAAATCCACC 58.567 47.619 0.00 0.00 0.00 4.61
247 248 2.552599 TCCACCGAACAACTGCAATA 57.447 45.000 0.00 0.00 0.00 1.90
276 277 2.747446 ACCACATAAATTGGTCGACAGC 59.253 45.455 18.91 0.81 44.54 4.40
280 281 8.787527 ACCACATAAATTGGTCGACAGCGATA 62.788 42.308 18.91 5.04 44.54 2.92
281 282 9.985474 ACCACATAAATTGGTCGACAGCGATAT 62.985 40.741 18.91 7.18 44.54 1.63
288 289 2.836479 TCGACAGCGATATCACGAAA 57.164 45.000 3.12 0.00 42.51 3.46
290 291 3.503891 TCGACAGCGATATCACGAAAAA 58.496 40.909 3.12 0.00 42.51 1.94
326 365 2.455674 TCAGATGGAAGTTCACCGTG 57.544 50.000 5.01 0.00 0.00 4.94
341 380 1.560770 CGTGCACGTTTTAGTCGCA 59.439 52.632 30.50 0.00 34.11 5.10
347 386 1.070175 CACGTTTTAGTCGCAACAGGG 60.070 52.381 0.00 0.00 0.00 4.45
367 406 3.151710 AGGGCCACGCACGCTATA 61.152 61.111 6.18 0.00 36.86 1.31
370 409 3.338676 GCCACGCACGCTATAGCC 61.339 66.667 19.00 4.33 37.91 3.93
403 442 3.859414 AGGCCAGATGAGCGAGCC 61.859 66.667 5.01 0.00 44.20 4.70
415 454 3.123620 CGAGCCAGGCAGCAACTC 61.124 66.667 15.80 0.00 34.23 3.01
416 455 2.033141 GAGCCAGGCAGCAACTCA 59.967 61.111 15.80 0.00 34.23 3.41
417 456 2.033757 AGCCAGGCAGCAACTCAG 59.966 61.111 15.80 0.00 34.23 3.35
418 457 3.745803 GCCAGGCAGCAACTCAGC 61.746 66.667 6.55 0.00 0.00 4.26
419 458 3.060615 CCAGGCAGCAACTCAGCC 61.061 66.667 0.00 0.00 46.68 4.85
422 461 2.282040 GGCAGCAACTCAGCCAGT 60.282 61.111 0.00 0.00 45.72 4.00
423 462 2.623915 GGCAGCAACTCAGCCAGTG 61.624 63.158 0.00 0.00 45.72 3.66
424 463 1.598962 GCAGCAACTCAGCCAGTGA 60.599 57.895 0.00 0.00 34.56 3.41
425 464 0.959372 GCAGCAACTCAGCCAGTGAT 60.959 55.000 0.00 0.00 34.56 3.06
426 465 0.803117 CAGCAACTCAGCCAGTGATG 59.197 55.000 0.00 0.00 34.56 3.07
427 466 0.399454 AGCAACTCAGCCAGTGATGT 59.601 50.000 0.00 0.00 34.56 3.06
428 467 1.625315 AGCAACTCAGCCAGTGATGTA 59.375 47.619 0.00 0.00 34.56 2.29
429 468 1.734465 GCAACTCAGCCAGTGATGTAC 59.266 52.381 0.00 0.00 34.56 2.90
430 469 2.613977 GCAACTCAGCCAGTGATGTACT 60.614 50.000 0.00 0.00 41.36 2.73
443 482 6.054860 AGTGATGTACTGTAAATCCAAGCT 57.945 37.500 13.98 5.86 38.49 3.74
444 483 7.182817 AGTGATGTACTGTAAATCCAAGCTA 57.817 36.000 13.98 0.00 38.49 3.32
445 484 7.042335 AGTGATGTACTGTAAATCCAAGCTAC 58.958 38.462 13.98 5.86 38.49 3.58
446 485 6.019801 GTGATGTACTGTAAATCCAAGCTACG 60.020 42.308 13.98 0.00 0.00 3.51
447 486 5.648178 TGTACTGTAAATCCAAGCTACGA 57.352 39.130 0.00 0.00 0.00 3.43
448 487 5.647589 TGTACTGTAAATCCAAGCTACGAG 58.352 41.667 0.00 0.00 0.00 4.18
449 488 4.124851 ACTGTAAATCCAAGCTACGAGG 57.875 45.455 0.00 0.00 0.00 4.63
450 489 3.767673 ACTGTAAATCCAAGCTACGAGGA 59.232 43.478 0.00 0.00 35.59 3.71
451 490 4.113354 CTGTAAATCCAAGCTACGAGGAC 58.887 47.826 0.00 0.00 33.57 3.85
452 491 2.295253 AAATCCAAGCTACGAGGACG 57.705 50.000 0.00 0.00 45.75 4.79
453 492 0.460311 AATCCAAGCTACGAGGACGG 59.540 55.000 0.00 0.00 44.46 4.79
454 493 1.392710 ATCCAAGCTACGAGGACGGG 61.393 60.000 0.00 0.00 44.46 5.28
455 494 2.494918 CAAGCTACGAGGACGGGG 59.505 66.667 0.00 0.00 44.46 5.73
456 495 3.459063 AAGCTACGAGGACGGGGC 61.459 66.667 0.00 0.00 44.46 5.80
459 498 3.446570 CTACGAGGACGGGGCGTT 61.447 66.667 0.00 0.00 41.37 4.84
460 499 3.695022 CTACGAGGACGGGGCGTTG 62.695 68.421 0.00 0.00 41.37 4.10
463 502 4.754667 GAGGACGGGGCGTTGACC 62.755 72.222 0.00 0.00 41.37 4.02
472 511 4.025401 GCGTTGACCCGTTGGCTG 62.025 66.667 0.00 0.00 33.59 4.85
473 512 3.353836 CGTTGACCCGTTGGCTGG 61.354 66.667 0.00 0.00 33.59 4.85
474 513 3.670377 GTTGACCCGTTGGCTGGC 61.670 66.667 0.00 0.00 33.59 4.85
475 514 4.966787 TTGACCCGTTGGCTGGCC 62.967 66.667 4.43 4.43 33.59 5.36
499 538 3.340727 GCATTGCTGCCAGTTCATC 57.659 52.632 0.16 0.00 42.88 2.92
500 539 0.179119 GCATTGCTGCCAGTTCATCC 60.179 55.000 0.16 0.00 42.88 3.51
501 540 0.099968 CATTGCTGCCAGTTCATCCG 59.900 55.000 0.00 0.00 0.00 4.18
502 541 0.035152 ATTGCTGCCAGTTCATCCGA 60.035 50.000 0.00 0.00 0.00 4.55
503 542 0.674581 TTGCTGCCAGTTCATCCGAG 60.675 55.000 0.00 0.00 0.00 4.63
504 543 1.078848 GCTGCCAGTTCATCCGAGT 60.079 57.895 0.00 0.00 0.00 4.18
505 544 0.674895 GCTGCCAGTTCATCCGAGTT 60.675 55.000 0.00 0.00 0.00 3.01
506 545 1.363744 CTGCCAGTTCATCCGAGTTC 58.636 55.000 0.00 0.00 0.00 3.01
507 546 0.389817 TGCCAGTTCATCCGAGTTCG 60.390 55.000 0.00 0.00 39.44 3.95
508 547 0.108804 GCCAGTTCATCCGAGTTCGA 60.109 55.000 2.59 0.00 43.02 3.71
509 548 1.671850 GCCAGTTCATCCGAGTTCGAA 60.672 52.381 2.59 0.00 43.02 3.71
510 549 2.893637 CCAGTTCATCCGAGTTCGAAT 58.106 47.619 0.00 0.00 43.02 3.34
511 550 2.860735 CCAGTTCATCCGAGTTCGAATC 59.139 50.000 0.00 0.00 43.02 2.52
512 551 2.860735 CAGTTCATCCGAGTTCGAATCC 59.139 50.000 0.00 0.00 43.02 3.01
513 552 2.761208 AGTTCATCCGAGTTCGAATCCT 59.239 45.455 0.00 0.00 43.02 3.24
514 553 2.860735 GTTCATCCGAGTTCGAATCCTG 59.139 50.000 0.00 0.00 43.02 3.86
515 554 2.375146 TCATCCGAGTTCGAATCCTGA 58.625 47.619 0.00 0.00 43.02 3.86
516 555 2.959030 TCATCCGAGTTCGAATCCTGAT 59.041 45.455 0.00 1.25 43.02 2.90
517 556 3.384789 TCATCCGAGTTCGAATCCTGATT 59.615 43.478 0.00 0.00 43.02 2.57
518 557 3.438297 TCCGAGTTCGAATCCTGATTC 57.562 47.619 0.00 9.37 42.76 2.52
525 564 2.217112 GAATCCTGATTCGGACGCG 58.783 57.895 3.53 3.53 37.97 6.01
526 565 1.822250 GAATCCTGATTCGGACGCGC 61.822 60.000 5.73 0.00 37.97 6.86
527 566 4.847516 TCCTGATTCGGACGCGCG 62.848 66.667 30.96 30.96 0.00 6.86
540 579 3.121030 GCGCGGTGCTCACAGATT 61.121 61.111 8.83 0.00 41.73 2.40
541 580 2.680913 GCGCGGTGCTCACAGATTT 61.681 57.895 8.83 0.00 41.73 2.17
542 581 1.868997 CGCGGTGCTCACAGATTTT 59.131 52.632 0.00 0.00 0.00 1.82
543 582 0.238289 CGCGGTGCTCACAGATTTTT 59.762 50.000 0.00 0.00 0.00 1.94
576 615 9.705290 AAATATGCTAACAAGGGTTAACTTTTG 57.295 29.630 16.05 16.05 38.92 2.44
577 616 6.969993 ATGCTAACAAGGGTTAACTTTTGA 57.030 33.333 21.31 6.55 38.92 2.69
578 617 6.777213 TGCTAACAAGGGTTAACTTTTGAA 57.223 33.333 21.31 12.18 38.92 2.69
579 618 7.354751 TGCTAACAAGGGTTAACTTTTGAAT 57.645 32.000 21.31 14.60 38.92 2.57
580 619 7.787028 TGCTAACAAGGGTTAACTTTTGAATT 58.213 30.769 21.31 12.74 38.92 2.17
581 620 7.708752 TGCTAACAAGGGTTAACTTTTGAATTG 59.291 33.333 21.31 14.06 38.92 2.32
582 621 7.170828 GCTAACAAGGGTTAACTTTTGAATTGG 59.829 37.037 21.31 12.94 38.92 3.16
583 622 6.553953 ACAAGGGTTAACTTTTGAATTGGT 57.446 33.333 21.31 3.80 0.00 3.67
584 623 6.578944 ACAAGGGTTAACTTTTGAATTGGTC 58.421 36.000 21.31 0.00 0.00 4.02
585 624 6.382859 ACAAGGGTTAACTTTTGAATTGGTCT 59.617 34.615 21.31 2.78 0.00 3.85
586 625 6.650427 AGGGTTAACTTTTGAATTGGTCTC 57.350 37.500 5.42 0.00 0.00 3.36
587 626 6.133356 AGGGTTAACTTTTGAATTGGTCTCA 58.867 36.000 5.42 0.00 0.00 3.27
588 627 6.782494 AGGGTTAACTTTTGAATTGGTCTCAT 59.218 34.615 5.42 0.00 0.00 2.90
589 628 7.290014 AGGGTTAACTTTTGAATTGGTCTCATT 59.710 33.333 5.42 0.00 0.00 2.57
590 629 7.931407 GGGTTAACTTTTGAATTGGTCTCATTT 59.069 33.333 5.42 0.00 0.00 2.32
591 630 9.325198 GGTTAACTTTTGAATTGGTCTCATTTT 57.675 29.630 5.42 0.00 0.00 1.82
622 661 1.520494 CTACGCTACCGGCAGAGATA 58.480 55.000 12.89 0.65 41.91 1.98
625 664 2.683377 ACGCTACCGGCAGAGATACTG 61.683 57.143 12.89 0.00 42.54 2.74
689 734 4.135153 CTGTGGTCCCGAGCGAGG 62.135 72.222 0.00 0.00 0.00 4.63
702 747 2.725641 CGAGGTGGTGACGTGACA 59.274 61.111 7.63 0.00 0.00 3.58
703 748 1.289066 CGAGGTGGTGACGTGACAT 59.711 57.895 7.63 0.00 0.00 3.06
704 749 1.008875 CGAGGTGGTGACGTGACATG 61.009 60.000 7.63 0.00 0.00 3.21
705 750 0.670546 GAGGTGGTGACGTGACATGG 60.671 60.000 7.63 0.00 0.00 3.66
706 751 2.325082 GGTGGTGACGTGACATGGC 61.325 63.158 7.63 0.00 0.00 4.40
707 752 2.031919 TGGTGACGTGACATGGCC 59.968 61.111 7.63 0.00 0.00 5.36
708 753 2.031919 GGTGACGTGACATGGCCA 59.968 61.111 8.56 8.56 0.00 5.36
709 754 2.325082 GGTGACGTGACATGGCCAC 61.325 63.158 8.16 3.10 0.00 5.01
710 755 1.596752 GTGACGTGACATGGCCACA 60.597 57.895 8.16 0.00 34.36 4.17
711 756 1.596752 TGACGTGACATGGCCACAC 60.597 57.895 8.16 11.73 34.36 3.82
714 759 2.669569 GTGACATGGCCACACGCT 60.670 61.111 8.16 0.00 37.74 5.07
715 760 2.669229 TGACATGGCCACACGCTG 60.669 61.111 8.16 4.19 37.74 5.18
716 761 4.107051 GACATGGCCACACGCTGC 62.107 66.667 8.16 0.00 37.74 5.25
717 762 4.648626 ACATGGCCACACGCTGCT 62.649 61.111 8.16 0.00 37.74 4.24
718 763 3.367743 CATGGCCACACGCTGCTT 61.368 61.111 8.16 0.00 37.74 3.91
719 764 2.598394 ATGGCCACACGCTGCTTT 60.598 55.556 8.16 0.00 37.74 3.51
720 765 2.629656 ATGGCCACACGCTGCTTTC 61.630 57.895 8.16 0.00 37.74 2.62
721 766 4.389576 GGCCACACGCTGCTTTCG 62.390 66.667 0.00 0.00 37.74 3.46
722 767 3.345808 GCCACACGCTGCTTTCGA 61.346 61.111 0.00 0.00 0.00 3.71
723 768 2.551270 CCACACGCTGCTTTCGAC 59.449 61.111 0.00 0.00 0.00 4.20
791 837 1.862806 GACGCCAGCTGAAACTGAC 59.137 57.895 17.39 0.00 40.25 3.51
875 921 2.662700 CGACACGCTTACTTGAAGTCT 58.337 47.619 0.00 0.00 37.49 3.24
876 922 3.050619 CGACACGCTTACTTGAAGTCTT 58.949 45.455 0.00 0.00 37.49 3.01
877 923 3.121328 CGACACGCTTACTTGAAGTCTTG 60.121 47.826 0.00 0.00 37.49 3.02
878 924 4.049186 GACACGCTTACTTGAAGTCTTGA 58.951 43.478 0.00 0.00 37.49 3.02
879 925 4.439057 ACACGCTTACTTGAAGTCTTGAA 58.561 39.130 0.00 0.00 37.49 2.69
880 926 4.270325 ACACGCTTACTTGAAGTCTTGAAC 59.730 41.667 0.00 0.00 37.49 3.18
881 927 3.808174 ACGCTTACTTGAAGTCTTGAACC 59.192 43.478 0.00 0.00 37.49 3.62
882 928 3.120991 CGCTTACTTGAAGTCTTGAACCG 60.121 47.826 0.00 0.00 37.49 4.44
891 937 1.959226 TCTTGAACCGAAGCACCGC 60.959 57.895 0.00 0.00 0.00 5.68
922 968 2.016704 GTCAGTGTGTCACTCGCCG 61.017 63.158 4.27 0.00 43.43 6.46
923 969 2.027605 CAGTGTGTCACTCGCCGT 59.972 61.111 4.27 0.00 43.43 5.68
924 970 1.591594 CAGTGTGTCACTCGCCGTT 60.592 57.895 4.27 0.00 43.43 4.44
932 978 3.681835 ACTCGCCGTTCCTTCGCT 61.682 61.111 0.00 0.00 0.00 4.93
951 997 0.813610 TGGTCACTTGCGGTTCTGTG 60.814 55.000 0.00 0.00 0.00 3.66
953 999 2.243957 TCACTTGCGGTTCTGTGCG 61.244 57.895 0.00 0.00 0.00 5.34
954 1000 2.108157 ACTTGCGGTTCTGTGCGA 59.892 55.556 0.00 0.00 0.00 5.10
955 1001 1.956170 ACTTGCGGTTCTGTGCGAG 60.956 57.895 0.06 0.06 46.07 5.03
962 1008 2.733218 TTCTGTGCGAGCGTTCCG 60.733 61.111 0.00 0.00 0.00 4.30
963 1009 4.717629 TCTGTGCGAGCGTTCCGG 62.718 66.667 0.00 0.00 0.00 5.14
971 1017 4.189188 AGCGTTCCGGGATCGTCG 62.189 66.667 23.96 15.15 33.95 5.12
994 1043 2.624169 CCAACATTGGGTTCGTCGT 58.376 52.632 2.43 0.00 44.70 4.34
1059 1109 2.571757 CTCTTGTCGCTGGCGGTA 59.428 61.111 14.94 1.87 40.25 4.02
1154 1213 4.702131 CCTCCTCCAGGTCAGTTATTTTTG 59.298 45.833 0.00 0.00 37.53 2.44
1167 1232 4.966787 TTTTGAGCGCCGCCCCTT 62.967 61.111 4.98 0.00 0.00 3.95
1188 1253 5.437289 TTCTTCCTTTCGTTCGTGTACTA 57.563 39.130 0.00 0.00 0.00 1.82
1189 1254 5.437289 TCTTCCTTTCGTTCGTGTACTAA 57.563 39.130 0.00 0.00 0.00 2.24
1190 1255 5.215160 TCTTCCTTTCGTTCGTGTACTAAC 58.785 41.667 0.00 0.00 0.00 2.34
1191 1256 4.836125 TCCTTTCGTTCGTGTACTAACT 57.164 40.909 0.00 0.00 0.00 2.24
1192 1257 5.940192 TCCTTTCGTTCGTGTACTAACTA 57.060 39.130 0.00 0.00 0.00 2.24
1193 1258 5.931532 TCCTTTCGTTCGTGTACTAACTAG 58.068 41.667 0.00 0.00 0.00 2.57
1194 1259 5.700832 TCCTTTCGTTCGTGTACTAACTAGA 59.299 40.000 0.00 0.00 0.00 2.43
1200 1265 6.309009 TCGTTCGTGTACTAACTAGACTACTG 59.691 42.308 0.00 0.00 0.00 2.74
1211 1276 3.920144 GACTACTGGTCGATCGGTG 57.080 57.895 20.60 12.18 35.07 4.94
1578 1981 3.041351 GGATGTGCGTGCGTGTGA 61.041 61.111 0.00 0.00 0.00 3.58
1603 2006 0.450983 AACTACTACTCGCACTCGCC 59.549 55.000 0.00 0.00 35.26 5.54
1609 2012 1.576451 TACTCGCACTCGCCGTAACA 61.576 55.000 0.00 0.00 35.26 2.41
1622 2034 0.701303 CGTAACAGTTCTGTCGCGTC 59.299 55.000 5.77 0.00 0.00 5.19
1660 2074 6.017440 GCTAACAATTTCTCTGTTGGTGTGTA 60.017 38.462 0.00 0.00 37.52 2.90
1695 2109 0.596577 CTGAAAGTCGAGGACGGTCA 59.403 55.000 10.76 4.95 37.67 4.02
1740 2219 1.112113 GAAGGCTCCACGATCAGGTA 58.888 55.000 0.00 0.00 0.00 3.08
1741 2220 1.480954 GAAGGCTCCACGATCAGGTAA 59.519 52.381 0.00 0.00 0.00 2.85
1742 2221 0.824759 AGGCTCCACGATCAGGTAAC 59.175 55.000 0.00 0.00 0.00 2.50
1743 2222 0.527817 GGCTCCACGATCAGGTAACG 60.528 60.000 0.00 0.00 46.39 3.18
1745 2224 1.402968 GCTCCACGATCAGGTAACGTA 59.597 52.381 0.00 0.00 46.39 3.57
1746 2225 2.793933 GCTCCACGATCAGGTAACGTAC 60.794 54.545 0.00 0.00 46.39 3.67
1766 2245 3.238241 CGTCGCGCGTCTTCGATT 61.238 61.111 30.98 0.00 39.71 3.34
1768 2247 1.547596 GTCGCGCGTCTTCGATTAC 59.452 57.895 30.98 13.40 39.71 1.89
1769 2248 0.860618 GTCGCGCGTCTTCGATTACT 60.861 55.000 30.98 0.00 39.71 2.24
1770 2249 0.860203 TCGCGCGTCTTCGATTACTG 60.860 55.000 30.98 0.00 39.71 2.74
1771 2250 0.860203 CGCGCGTCTTCGATTACTGA 60.860 55.000 24.19 0.00 39.71 3.41
1772 2251 0.566593 GCGCGTCTTCGATTACTGAC 59.433 55.000 8.43 0.00 39.71 3.51
1775 2254 1.189403 CGTCTTCGATTACTGACGGC 58.811 55.000 13.58 0.00 45.54 5.68
1776 2255 1.189403 GTCTTCGATTACTGACGGCG 58.811 55.000 4.80 4.80 0.00 6.46
1777 2256 0.524816 TCTTCGATTACTGACGGCGC 60.525 55.000 6.90 0.00 0.00 6.53
1778 2257 0.800683 CTTCGATTACTGACGGCGCA 60.801 55.000 10.83 5.20 0.00 6.09
1779 2258 0.388778 TTCGATTACTGACGGCGCAA 60.389 50.000 10.83 0.00 0.00 4.85
1780 2259 0.388778 TCGATTACTGACGGCGCAAA 60.389 50.000 10.83 0.00 0.00 3.68
1781 2260 0.247145 CGATTACTGACGGCGCAAAC 60.247 55.000 10.83 0.00 0.00 2.93
1782 2261 1.076332 GATTACTGACGGCGCAAACT 58.924 50.000 10.83 0.00 0.00 2.66
1783 2262 0.796312 ATTACTGACGGCGCAAACTG 59.204 50.000 10.83 6.03 0.00 3.16
1784 2263 0.249531 TTACTGACGGCGCAAACTGA 60.250 50.000 10.83 0.00 0.00 3.41
1785 2264 0.249531 TACTGACGGCGCAAACTGAA 60.250 50.000 10.83 0.00 0.00 3.02
1786 2265 0.884704 ACTGACGGCGCAAACTGAAT 60.885 50.000 10.83 0.00 0.00 2.57
1787 2266 0.238289 CTGACGGCGCAAACTGAATT 59.762 50.000 10.83 0.00 0.00 2.17
1788 2267 0.665835 TGACGGCGCAAACTGAATTT 59.334 45.000 10.83 0.00 0.00 1.82
1796 2275 1.139163 CAAACTGAATTTGCACGCCC 58.861 50.000 0.00 0.00 41.30 6.13
1797 2276 0.033366 AAACTGAATTTGCACGCCCC 59.967 50.000 0.00 0.00 0.00 5.80
1798 2277 2.141122 AACTGAATTTGCACGCCCCG 62.141 55.000 0.00 0.00 0.00 5.73
1799 2278 2.596046 TGAATTTGCACGCCCCGT 60.596 55.556 0.00 0.00 42.36 5.28
1811 2290 3.766691 CCCCGTGATCGACCGGTT 61.767 66.667 9.42 0.00 42.67 4.44
1812 2291 2.202703 CCCGTGATCGACCGGTTC 60.203 66.667 9.42 2.43 42.67 3.62
1820 2299 4.130281 CGACCGGTTCGCGCTTTC 62.130 66.667 9.42 0.00 41.87 2.62
1821 2300 4.130281 GACCGGTTCGCGCTTTCG 62.130 66.667 9.42 4.02 39.07 3.46
1822 2301 4.955774 ACCGGTTCGCGCTTTCGT 62.956 61.111 0.00 0.00 38.14 3.85
1823 2302 3.708734 CCGGTTCGCGCTTTCGTT 61.709 61.111 5.56 0.00 38.14 3.85
1824 2303 2.202008 CGGTTCGCGCTTTCGTTC 60.202 61.111 5.56 0.00 38.14 3.95
2120 2612 5.483811 TCACTCTACTCAGTCTACAGTCTG 58.516 45.833 0.00 0.00 33.51 3.51
2222 2714 1.065410 TGAAAGGGGACAAGGCTGGA 61.065 55.000 0.00 0.00 0.00 3.86
2229 2721 0.957888 GGACAAGGCTGGACAGAAGC 60.958 60.000 3.00 0.00 40.06 3.86
2365 2871 4.411927 ACCTCACCAGCTAGTAGGATATG 58.588 47.826 12.32 0.00 0.00 1.78
2506 3032 0.109532 TTCACGAACCCATCAAGGCA 59.890 50.000 0.00 0.00 35.39 4.75
2530 3056 4.115199 AAGGGAGCGATGGTGGCC 62.115 66.667 0.00 0.00 0.00 5.36
2533 3059 4.424711 GGAGCGATGGTGGCCCAA 62.425 66.667 0.00 0.00 46.04 4.12
2695 3221 1.588824 CGAAGGTGCCACATGTGCAT 61.589 55.000 20.81 7.34 41.46 3.96
2736 3268 6.921914 AGACATGTACTGTTAGTGTTACCTC 58.078 40.000 0.00 0.00 38.54 3.85
2737 3269 6.720288 AGACATGTACTGTTAGTGTTACCTCT 59.280 38.462 0.00 0.00 38.54 3.69
2738 3270 7.232941 AGACATGTACTGTTAGTGTTACCTCTT 59.767 37.037 0.00 0.00 38.54 2.85
2739 3271 8.413309 ACATGTACTGTTAGTGTTACCTCTTA 57.587 34.615 0.00 0.00 32.90 2.10
2740 3272 8.302438 ACATGTACTGTTAGTGTTACCTCTTAC 58.698 37.037 0.00 0.00 32.90 2.34
2741 3273 7.219484 TGTACTGTTAGTGTTACCTCTTACC 57.781 40.000 0.00 0.00 0.00 2.85
2742 3274 7.006509 TGTACTGTTAGTGTTACCTCTTACCT 58.993 38.462 0.00 0.00 0.00 3.08
2826 3358 5.803020 AGCAATTTACGTCTTCCTGAATC 57.197 39.130 0.00 0.00 0.00 2.52
2827 3359 4.330074 AGCAATTTACGTCTTCCTGAATCG 59.670 41.667 0.00 4.08 0.00 3.34
2835 3367 2.092914 GTCTTCCTGAATCGGGATGGTT 60.093 50.000 19.92 0.00 38.86 3.67
2837 3369 3.134081 TCTTCCTGAATCGGGATGGTTAC 59.866 47.826 19.92 0.00 38.86 2.50
2844 3376 2.882927 TCGGGATGGTTACTTCATCG 57.117 50.000 0.00 0.00 41.24 3.84
2856 3388 1.066573 ACTTCATCGTCTCCTTGCTGG 60.067 52.381 0.00 0.00 37.10 4.85
2897 3429 3.749064 GTGCGGAGAGGAGCGACA 61.749 66.667 0.00 0.00 35.87 4.35
2906 3438 0.033228 GAGGAGCGACATGGAGATGG 59.967 60.000 0.00 0.00 33.39 3.51
2912 3444 1.012086 CGACATGGAGATGGTGCTTG 58.988 55.000 0.00 0.00 33.39 4.01
2913 3445 1.405933 CGACATGGAGATGGTGCTTGA 60.406 52.381 0.00 0.00 33.39 3.02
2914 3446 2.012673 GACATGGAGATGGTGCTTGAC 58.987 52.381 0.00 0.00 33.39 3.18
2915 3447 1.352017 ACATGGAGATGGTGCTTGACA 59.648 47.619 0.00 0.00 33.39 3.58
2940 3472 2.185608 GCGAGGACTGAAGGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
2988 4332 1.000163 CCCCTCTCCGTCATATCAACG 60.000 57.143 1.07 1.07 39.78 4.10
2990 4334 2.287668 CCCTCTCCGTCATATCAACGAC 60.288 54.545 8.39 0.00 42.62 4.34
3018 4362 1.755395 ATGCCATCTTGCCGCACAT 60.755 52.632 0.00 0.00 34.87 3.21
3019 4363 1.731433 ATGCCATCTTGCCGCACATC 61.731 55.000 0.00 0.00 34.87 3.06
3034 4378 2.359900 CACATCCACTGGTAAGGAAGC 58.640 52.381 0.00 0.00 37.48 3.86
3038 4382 1.906574 TCCACTGGTAAGGAAGCGATT 59.093 47.619 0.00 0.00 0.00 3.34
3039 4383 2.009774 CCACTGGTAAGGAAGCGATTG 58.990 52.381 0.00 0.00 0.00 2.67
3068 4412 0.999406 GCGTCAACTACATCGCATGT 59.001 50.000 0.00 6.93 46.40 3.21
3099 4449 2.438951 TACGTGGGCGGACTTTGACC 62.439 60.000 0.00 0.00 43.45 4.02
3103 4453 3.056328 GGCGGACTTTGACCCTGC 61.056 66.667 0.00 0.00 0.00 4.85
3104 4454 3.056328 GCGGACTTTGACCCTGCC 61.056 66.667 0.00 0.00 0.00 4.85
3159 4512 2.260822 CAGTGGAGGAGAGGAAAAGGA 58.739 52.381 0.00 0.00 0.00 3.36
3167 4520 1.002011 GAGGAAAAGGAAGGCCGCT 60.002 57.895 0.00 0.00 39.96 5.52
3212 4565 1.278637 CAAGAAACGTGACGCCACC 59.721 57.895 4.25 0.00 40.12 4.61
3224 4577 3.357079 GCCACCTGCACCGTGAAG 61.357 66.667 10.16 0.01 40.77 3.02
3230 4583 1.294659 CCTGCACCGTGAAGAAGAGC 61.295 60.000 8.23 0.00 0.00 4.09
3246 4599 2.203126 GCTGGGCGGAGATCCAAG 60.203 66.667 0.00 0.00 32.59 3.61
3249 4602 0.105039 CTGGGCGGAGATCCAAGTAC 59.895 60.000 0.00 0.00 32.59 2.73
3283 4637 1.743996 GCAAGGCCGAGAAAGAGAAT 58.256 50.000 0.00 0.00 0.00 2.40
3289 4643 1.921230 GCCGAGAAAGAGAATGACGAC 59.079 52.381 0.00 0.00 0.00 4.34
3294 4648 3.827625 AGAAAGAGAATGACGACGTCTG 58.172 45.455 26.86 9.79 33.15 3.51
3297 4651 0.802607 GAGAATGACGACGTCTGCCC 60.803 60.000 26.86 13.98 33.15 5.36
3332 4686 0.745845 GCTACCTCCACCTGCATGTG 60.746 60.000 14.53 14.53 35.98 3.21
3444 4831 3.020274 TGGCTTTGAGTGTTGTTTAGCA 58.980 40.909 0.00 0.00 0.00 3.49
3450 4837 4.350368 TGAGTGTTGTTTAGCATCTGGA 57.650 40.909 0.00 0.00 0.00 3.86
3457 4844 6.363357 GTGTTGTTTAGCATCTGGATTTTCAC 59.637 38.462 0.00 0.00 0.00 3.18
3481 4868 9.295214 CACAAATTTTAGATTACAACACACACA 57.705 29.630 0.00 0.00 0.00 3.72
3482 4869 9.862371 ACAAATTTTAGATTACAACACACACAA 57.138 25.926 0.00 0.00 0.00 3.33
3501 4888 5.929415 ACACAATTTTCTTTGACAAACCGTT 59.071 32.000 0.00 0.00 0.00 4.44
3503 4890 6.735957 CACAATTTTCTTTGACAAACCGTTTG 59.264 34.615 20.18 20.18 45.95 2.93
3530 4917 8.423906 GATAGTGATCCTTATTACTCCCTTCA 57.576 38.462 0.00 0.00 34.12 3.02
3531 4918 8.980832 ATAGTGATCCTTATTACTCCCTTCAT 57.019 34.615 0.00 0.00 34.12 2.57
3532 4919 7.698163 AGTGATCCTTATTACTCCCTTCATT 57.302 36.000 0.00 0.00 25.80 2.57
3533 4920 8.107196 AGTGATCCTTATTACTCCCTTCATTT 57.893 34.615 0.00 0.00 25.80 2.32
3534 4921 8.560903 AGTGATCCTTATTACTCCCTTCATTTT 58.439 33.333 0.00 0.00 25.80 1.82
3535 4922 9.190317 GTGATCCTTATTACTCCCTTCATTTTT 57.810 33.333 0.00 0.00 0.00 1.94
3546 4933 8.056407 ACTCCCTTCATTTTTATTTACTCTGC 57.944 34.615 0.00 0.00 0.00 4.26
3547 4934 7.669722 ACTCCCTTCATTTTTATTTACTCTGCA 59.330 33.333 0.00 0.00 0.00 4.41
3548 4935 8.593945 TCCCTTCATTTTTATTTACTCTGCAT 57.406 30.769 0.00 0.00 0.00 3.96
3549 4936 9.693739 TCCCTTCATTTTTATTTACTCTGCATA 57.306 29.630 0.00 0.00 0.00 3.14
3565 4952 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
3566 4953 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
3567 4954 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.185852 TCTGACAAATATAACGTCGACTCA 57.814 37.500 14.70 5.38 32.17 3.41
1 2 7.133513 AGATCTGACAAATATAACGTCGACTC 58.866 38.462 14.70 0.50 32.17 3.36
2 3 7.028926 AGATCTGACAAATATAACGTCGACT 57.971 36.000 14.70 0.00 32.17 4.18
3 4 6.910972 TGAGATCTGACAAATATAACGTCGAC 59.089 38.462 5.18 5.18 32.17 4.20
4 5 6.910972 GTGAGATCTGACAAATATAACGTCGA 59.089 38.462 7.52 0.00 32.17 4.20
5 6 6.691388 TGTGAGATCTGACAAATATAACGTCG 59.309 38.462 12.97 0.00 32.17 5.12
6 7 7.305475 CGTGTGAGATCTGACAAATATAACGTC 60.305 40.741 16.99 0.00 0.00 4.34
7 8 6.472486 CGTGTGAGATCTGACAAATATAACGT 59.528 38.462 16.99 0.00 0.00 3.99
8 9 6.074835 CCGTGTGAGATCTGACAAATATAACG 60.075 42.308 16.99 13.31 0.00 3.18
9 10 6.978659 TCCGTGTGAGATCTGACAAATATAAC 59.021 38.462 16.99 1.89 0.00 1.89
10 11 7.068226 TCTCCGTGTGAGATCTGACAAATATAA 59.932 37.037 16.99 0.00 45.29 0.98
11 12 6.546034 TCTCCGTGTGAGATCTGACAAATATA 59.454 38.462 16.99 0.55 45.29 0.86
12 13 5.360999 TCTCCGTGTGAGATCTGACAAATAT 59.639 40.000 16.99 0.00 45.29 1.28
13 14 4.705023 TCTCCGTGTGAGATCTGACAAATA 59.295 41.667 16.99 4.32 45.29 1.40
14 15 3.511540 TCTCCGTGTGAGATCTGACAAAT 59.488 43.478 16.99 0.00 45.29 2.32
15 16 2.890945 TCTCCGTGTGAGATCTGACAAA 59.109 45.455 16.99 5.03 45.29 2.83
16 17 2.514803 TCTCCGTGTGAGATCTGACAA 58.485 47.619 16.99 0.70 45.29 3.18
17 18 2.200373 TCTCCGTGTGAGATCTGACA 57.800 50.000 11.27 11.27 45.29 3.58
25 26 1.092348 TACACCGATCTCCGTGTGAG 58.908 55.000 16.12 0.00 39.87 3.51
26 27 0.806868 GTACACCGATCTCCGTGTGA 59.193 55.000 16.12 3.18 39.87 3.58
27 28 0.524414 TGTACACCGATCTCCGTGTG 59.476 55.000 16.12 7.25 41.73 3.82
28 29 1.250328 TTGTACACCGATCTCCGTGT 58.750 50.000 12.78 12.78 36.79 4.49
29 30 2.579207 ATTGTACACCGATCTCCGTG 57.421 50.000 0.00 0.00 36.31 4.94
30 31 3.604875 AAATTGTACACCGATCTCCGT 57.395 42.857 0.00 0.00 36.31 4.69
31 32 4.939509 AAAAATTGTACACCGATCTCCG 57.060 40.909 0.00 0.00 38.18 4.63
70 71 9.851686 AGTCTCAGCCAAATGATAAAACATATA 57.148 29.630 0.00 0.00 0.00 0.86
71 72 8.757982 AGTCTCAGCCAAATGATAAAACATAT 57.242 30.769 0.00 0.00 0.00 1.78
72 73 8.579850 AAGTCTCAGCCAAATGATAAAACATA 57.420 30.769 0.00 0.00 0.00 2.29
73 74 7.472334 AAGTCTCAGCCAAATGATAAAACAT 57.528 32.000 0.00 0.00 0.00 2.71
74 75 6.899393 AAGTCTCAGCCAAATGATAAAACA 57.101 33.333 0.00 0.00 0.00 2.83
75 76 9.860898 AATAAAGTCTCAGCCAAATGATAAAAC 57.139 29.630 0.00 0.00 0.00 2.43
79 80 9.905713 ACTTAATAAAGTCTCAGCCAAATGATA 57.094 29.630 0.00 0.00 42.42 2.15
80 81 8.814038 ACTTAATAAAGTCTCAGCCAAATGAT 57.186 30.769 0.00 0.00 42.42 2.45
99 100 9.868277 CTAGAACTCAATTGACTGAGACTTAAT 57.132 33.333 3.38 0.00 44.82 1.40
100 101 8.861086 ACTAGAACTCAATTGACTGAGACTTAA 58.139 33.333 3.38 0.00 44.82 1.85
101 102 8.410673 ACTAGAACTCAATTGACTGAGACTTA 57.589 34.615 3.38 0.00 44.82 2.24
102 103 7.014711 TGACTAGAACTCAATTGACTGAGACTT 59.985 37.037 3.38 0.00 44.82 3.01
103 104 6.491745 TGACTAGAACTCAATTGACTGAGACT 59.508 38.462 3.38 8.37 44.82 3.24
104 105 6.584563 GTGACTAGAACTCAATTGACTGAGAC 59.415 42.308 3.38 0.00 44.82 3.36
105 106 6.265422 TGTGACTAGAACTCAATTGACTGAGA 59.735 38.462 3.38 0.00 44.82 3.27
106 107 6.364706 GTGTGACTAGAACTCAATTGACTGAG 59.635 42.308 3.38 0.00 46.94 3.35
107 108 6.040955 AGTGTGACTAGAACTCAATTGACTGA 59.959 38.462 3.38 0.00 0.00 3.41
108 109 6.219473 AGTGTGACTAGAACTCAATTGACTG 58.781 40.000 3.38 0.00 0.00 3.51
109 110 6.266558 AGAGTGTGACTAGAACTCAATTGACT 59.733 38.462 3.38 3.12 42.28 3.41
110 111 6.451393 AGAGTGTGACTAGAACTCAATTGAC 58.549 40.000 3.38 0.00 42.28 3.18
111 112 6.656632 AGAGTGTGACTAGAACTCAATTGA 57.343 37.500 8.12 8.12 42.28 2.57
112 113 7.721286 AAAGAGTGTGACTAGAACTCAATTG 57.279 36.000 16.30 0.00 42.28 2.32
113 114 7.987458 TGAAAAGAGTGTGACTAGAACTCAATT 59.013 33.333 16.30 12.07 42.28 2.32
114 115 7.500992 TGAAAAGAGTGTGACTAGAACTCAAT 58.499 34.615 16.30 8.49 42.28 2.57
115 116 6.873997 TGAAAAGAGTGTGACTAGAACTCAA 58.126 36.000 16.30 1.75 42.28 3.02
116 117 6.096987 ACTGAAAAGAGTGTGACTAGAACTCA 59.903 38.462 16.30 7.14 42.28 3.41
117 118 6.508777 ACTGAAAAGAGTGTGACTAGAACTC 58.491 40.000 0.00 4.28 40.53 3.01
118 119 6.472686 ACTGAAAAGAGTGTGACTAGAACT 57.527 37.500 0.00 0.00 0.00 3.01
119 120 8.819643 ATTACTGAAAAGAGTGTGACTAGAAC 57.180 34.615 0.00 0.00 0.00 3.01
120 121 9.261180 CAATTACTGAAAAGAGTGTGACTAGAA 57.739 33.333 0.00 0.00 0.00 2.10
121 122 7.872993 CCAATTACTGAAAAGAGTGTGACTAGA 59.127 37.037 0.00 0.00 0.00 2.43
122 123 7.657761 ACCAATTACTGAAAAGAGTGTGACTAG 59.342 37.037 0.00 0.00 0.00 2.57
123 124 7.506114 ACCAATTACTGAAAAGAGTGTGACTA 58.494 34.615 0.00 0.00 0.00 2.59
124 125 6.357367 ACCAATTACTGAAAAGAGTGTGACT 58.643 36.000 0.00 0.00 0.00 3.41
125 126 6.619801 ACCAATTACTGAAAAGAGTGTGAC 57.380 37.500 0.00 0.00 0.00 3.67
126 127 7.054124 AGAACCAATTACTGAAAAGAGTGTGA 58.946 34.615 0.00 0.00 0.00 3.58
127 128 7.227512 AGAGAACCAATTACTGAAAAGAGTGTG 59.772 37.037 0.00 0.00 0.00 3.82
128 129 7.227512 CAGAGAACCAATTACTGAAAAGAGTGT 59.772 37.037 0.00 0.00 0.00 3.55
129 130 7.442364 TCAGAGAACCAATTACTGAAAAGAGTG 59.558 37.037 0.00 0.00 35.20 3.51
130 131 7.509546 TCAGAGAACCAATTACTGAAAAGAGT 58.490 34.615 0.00 0.00 35.20 3.24
131 132 7.969536 TCAGAGAACCAATTACTGAAAAGAG 57.030 36.000 0.00 0.00 35.20 2.85
132 133 7.773224 TGTTCAGAGAACCAATTACTGAAAAGA 59.227 33.333 0.00 0.00 44.97 2.52
133 134 7.930217 TGTTCAGAGAACCAATTACTGAAAAG 58.070 34.615 0.00 0.00 44.97 2.27
134 135 7.873719 TGTTCAGAGAACCAATTACTGAAAA 57.126 32.000 0.00 0.00 44.97 2.29
135 136 7.873719 TTGTTCAGAGAACCAATTACTGAAA 57.126 32.000 0.00 0.00 44.97 2.69
136 137 7.873719 TTTGTTCAGAGAACCAATTACTGAA 57.126 32.000 7.36 0.00 42.59 3.02
137 138 7.939039 AGATTTGTTCAGAGAACCAATTACTGA 59.061 33.333 9.61 0.00 36.11 3.41
138 139 8.103948 AGATTTGTTCAGAGAACCAATTACTG 57.896 34.615 9.61 0.00 0.00 2.74
139 140 7.939039 TGAGATTTGTTCAGAGAACCAATTACT 59.061 33.333 9.61 4.86 0.00 2.24
140 141 8.017946 GTGAGATTTGTTCAGAGAACCAATTAC 58.982 37.037 9.61 8.05 0.00 1.89
141 142 7.719193 TGTGAGATTTGTTCAGAGAACCAATTA 59.281 33.333 9.61 0.61 0.00 1.40
142 143 6.547141 TGTGAGATTTGTTCAGAGAACCAATT 59.453 34.615 9.61 2.69 0.00 2.32
143 144 6.064060 TGTGAGATTTGTTCAGAGAACCAAT 58.936 36.000 8.40 8.40 0.00 3.16
144 145 5.436175 TGTGAGATTTGTTCAGAGAACCAA 58.564 37.500 7.36 3.52 0.00 3.67
145 146 5.034852 TGTGAGATTTGTTCAGAGAACCA 57.965 39.130 7.36 0.00 0.00 3.67
146 147 5.296780 TGTTGTGAGATTTGTTCAGAGAACC 59.703 40.000 7.36 0.00 0.00 3.62
153 154 4.819088 TCCGAATGTTGTGAGATTTGTTCA 59.181 37.500 0.00 0.00 0.00 3.18
161 162 5.400066 TGTCTTATCCGAATGTTGTGAGA 57.600 39.130 0.00 0.00 0.00 3.27
162 163 7.653311 TCATATGTCTTATCCGAATGTTGTGAG 59.347 37.037 1.90 0.00 0.00 3.51
168 169 8.637196 TCTACTCATATGTCTTATCCGAATGT 57.363 34.615 1.90 0.00 0.00 2.71
181 182 9.900710 CGATAGCTTTTACTTCTACTCATATGT 57.099 33.333 1.90 0.00 0.00 2.29
191 192 8.790718 TCGGTAATATCGATAGCTTTTACTTCT 58.209 33.333 18.92 0.00 0.00 2.85
192 193 8.961294 TCGGTAATATCGATAGCTTTTACTTC 57.039 34.615 18.92 8.55 0.00 3.01
193 194 9.408069 CTTCGGTAATATCGATAGCTTTTACTT 57.592 33.333 18.92 7.43 36.49 2.24
200 201 5.646577 AAGCTTCGGTAATATCGATAGCT 57.353 39.130 19.28 19.28 44.40 3.32
201 202 6.320171 TGTAAGCTTCGGTAATATCGATAGC 58.680 40.000 16.52 16.52 39.07 2.97
203 204 9.350357 GATTTGTAAGCTTCGGTAATATCGATA 57.650 33.333 7.75 7.75 36.49 2.92
204 205 7.331193 GGATTTGTAAGCTTCGGTAATATCGAT 59.669 37.037 0.00 2.16 36.49 3.59
210 211 4.638865 GGTGGATTTGTAAGCTTCGGTAAT 59.361 41.667 0.00 0.00 0.00 1.89
216 217 3.500680 TGTTCGGTGGATTTGTAAGCTTC 59.499 43.478 0.00 0.00 0.00 3.86
221 222 3.003897 GCAGTTGTTCGGTGGATTTGTAA 59.996 43.478 0.00 0.00 0.00 2.41
233 234 3.811722 TTGCTCTATTGCAGTTGTTCG 57.188 42.857 0.00 0.00 44.27 3.95
301 302 4.275936 CGGTGAACTTCCATCTGAAACTTT 59.724 41.667 0.00 0.00 31.06 2.66
303 304 3.181454 ACGGTGAACTTCCATCTGAAACT 60.181 43.478 0.00 0.00 31.06 2.66
313 352 1.433837 AACGTGCACGGTGAACTTCC 61.434 55.000 39.21 0.00 44.95 3.46
317 356 1.328374 ACTAAAACGTGCACGGTGAAC 59.672 47.619 39.21 11.19 39.00 3.18
321 360 1.824272 GCGACTAAAACGTGCACGGT 61.824 55.000 39.21 34.01 43.60 4.83
326 365 1.658968 CTGTTGCGACTAAAACGTGC 58.341 50.000 5.50 0.00 0.00 5.34
364 403 4.146564 TGTTACTATCTGCCGTGGCTATA 58.853 43.478 12.84 8.98 42.51 1.31
367 406 1.137086 CTGTTACTATCTGCCGTGGCT 59.863 52.381 12.84 0.00 42.51 4.75
370 409 1.571919 GCCTGTTACTATCTGCCGTG 58.428 55.000 0.00 0.00 0.00 4.94
420 459 6.054860 AGCTTGGATTTACAGTACATCACT 57.945 37.500 8.65 0.00 38.32 3.41
421 460 6.019801 CGTAGCTTGGATTTACAGTACATCAC 60.020 42.308 8.65 0.41 0.00 3.06
422 461 6.040247 CGTAGCTTGGATTTACAGTACATCA 58.960 40.000 8.65 0.00 0.00 3.07
423 462 6.270815 TCGTAGCTTGGATTTACAGTACATC 58.729 40.000 0.00 0.00 0.00 3.06
424 463 6.216801 TCGTAGCTTGGATTTACAGTACAT 57.783 37.500 0.00 0.00 0.00 2.29
425 464 5.393787 CCTCGTAGCTTGGATTTACAGTACA 60.394 44.000 0.00 0.00 0.00 2.90
426 465 5.041940 CCTCGTAGCTTGGATTTACAGTAC 58.958 45.833 0.00 0.00 0.00 2.73
427 466 4.951715 TCCTCGTAGCTTGGATTTACAGTA 59.048 41.667 0.00 0.00 0.00 2.74
428 467 3.767673 TCCTCGTAGCTTGGATTTACAGT 59.232 43.478 0.00 0.00 0.00 3.55
429 468 4.113354 GTCCTCGTAGCTTGGATTTACAG 58.887 47.826 0.00 0.00 32.03 2.74
430 469 3.428452 CGTCCTCGTAGCTTGGATTTACA 60.428 47.826 0.00 0.00 32.03 2.41
431 470 3.114065 CGTCCTCGTAGCTTGGATTTAC 58.886 50.000 0.00 0.00 32.03 2.01
432 471 2.100252 CCGTCCTCGTAGCTTGGATTTA 59.900 50.000 0.00 0.00 35.01 1.40
433 472 1.134788 CCGTCCTCGTAGCTTGGATTT 60.135 52.381 0.00 0.00 35.01 2.17
434 473 0.460311 CCGTCCTCGTAGCTTGGATT 59.540 55.000 0.00 0.00 35.01 3.01
435 474 1.392710 CCCGTCCTCGTAGCTTGGAT 61.393 60.000 0.00 0.00 35.01 3.41
436 475 2.050350 CCCGTCCTCGTAGCTTGGA 61.050 63.158 0.00 0.00 35.01 3.53
437 476 2.494918 CCCGTCCTCGTAGCTTGG 59.505 66.667 0.00 0.00 35.01 3.61
438 477 2.494918 CCCCGTCCTCGTAGCTTG 59.505 66.667 0.00 0.00 35.01 4.01
439 478 3.459063 GCCCCGTCCTCGTAGCTT 61.459 66.667 0.00 0.00 35.01 3.74
442 481 3.446570 AACGCCCCGTCCTCGTAG 61.447 66.667 0.00 0.00 39.99 3.51
443 482 3.751246 CAACGCCCCGTCCTCGTA 61.751 66.667 0.00 0.00 39.99 3.43
446 485 4.754667 GGTCAACGCCCCGTCCTC 62.755 72.222 0.00 0.00 39.99 3.71
455 494 4.025401 CAGCCAACGGGTCAACGC 62.025 66.667 0.00 0.00 37.37 4.84
456 495 3.353836 CCAGCCAACGGGTCAACG 61.354 66.667 0.00 0.00 40.31 4.10
457 496 3.670377 GCCAGCCAACGGGTCAAC 61.670 66.667 0.00 0.00 36.17 3.18
458 497 4.966787 GGCCAGCCAACGGGTCAA 62.967 66.667 3.12 0.00 35.57 3.18
481 520 0.179119 GGATGAACTGGCAGCAATGC 60.179 55.000 15.89 7.39 0.00 3.56
482 521 0.099968 CGGATGAACTGGCAGCAATG 59.900 55.000 15.89 0.00 0.00 2.82
483 522 0.035152 TCGGATGAACTGGCAGCAAT 60.035 50.000 15.89 5.59 0.00 3.56
484 523 0.674581 CTCGGATGAACTGGCAGCAA 60.675 55.000 15.89 0.00 0.00 3.91
485 524 1.078918 CTCGGATGAACTGGCAGCA 60.079 57.895 15.89 5.77 0.00 4.41
486 525 0.674895 AACTCGGATGAACTGGCAGC 60.675 55.000 15.89 0.00 0.00 5.25
487 526 1.363744 GAACTCGGATGAACTGGCAG 58.636 55.000 14.16 14.16 0.00 4.85
488 527 0.389817 CGAACTCGGATGAACTGGCA 60.390 55.000 0.00 0.00 35.37 4.92
489 528 0.108804 TCGAACTCGGATGAACTGGC 60.109 55.000 0.00 0.00 40.29 4.85
490 529 2.363788 TTCGAACTCGGATGAACTGG 57.636 50.000 0.00 0.00 40.29 4.00
491 530 2.860735 GGATTCGAACTCGGATGAACTG 59.139 50.000 0.00 0.00 37.77 3.16
492 531 2.761208 AGGATTCGAACTCGGATGAACT 59.239 45.455 0.00 0.00 37.77 3.01
493 532 2.860735 CAGGATTCGAACTCGGATGAAC 59.139 50.000 0.00 0.00 37.77 3.18
494 533 2.758423 TCAGGATTCGAACTCGGATGAA 59.242 45.455 0.00 0.00 37.77 2.57
495 534 2.375146 TCAGGATTCGAACTCGGATGA 58.625 47.619 0.00 3.06 37.77 2.92
496 535 2.871182 TCAGGATTCGAACTCGGATG 57.129 50.000 0.00 0.90 37.77 3.51
497 536 3.983741 GAATCAGGATTCGAACTCGGAT 58.016 45.455 0.00 4.75 40.91 4.18
498 537 3.438297 GAATCAGGATTCGAACTCGGA 57.562 47.619 0.00 2.32 37.97 4.55
507 546 1.822250 GCGCGTCCGAATCAGGATTC 61.822 60.000 8.43 11.17 43.04 2.52
508 547 1.883084 GCGCGTCCGAATCAGGATT 60.883 57.895 8.43 0.00 43.04 3.01
509 548 2.279517 GCGCGTCCGAATCAGGAT 60.280 61.111 8.43 0.00 43.04 3.24
510 549 4.847516 CGCGCGTCCGAATCAGGA 62.848 66.667 24.19 0.00 38.11 3.86
523 562 2.187599 AAAATCTGTGAGCACCGCGC 62.188 55.000 0.00 0.00 42.91 6.86
524 563 0.238289 AAAAATCTGTGAGCACCGCG 59.762 50.000 0.00 0.00 0.00 6.46
550 589 9.705290 CAAAAGTTAACCCTTGTTAGCATATTT 57.295 29.630 0.88 0.00 39.74 1.40
551 590 9.084533 TCAAAAGTTAACCCTTGTTAGCATATT 57.915 29.630 13.92 0.00 39.74 1.28
552 591 8.644374 TCAAAAGTTAACCCTTGTTAGCATAT 57.356 30.769 13.92 0.00 39.74 1.78
553 592 8.466617 TTCAAAAGTTAACCCTTGTTAGCATA 57.533 30.769 13.92 0.00 39.74 3.14
554 593 6.969993 TCAAAAGTTAACCCTTGTTAGCAT 57.030 33.333 13.92 0.00 39.74 3.79
555 594 6.777213 TTCAAAAGTTAACCCTTGTTAGCA 57.223 33.333 13.92 0.00 39.74 3.49
556 595 7.170828 CCAATTCAAAAGTTAACCCTTGTTAGC 59.829 37.037 13.92 0.00 38.17 3.09
557 596 8.201464 ACCAATTCAAAAGTTAACCCTTGTTAG 58.799 33.333 13.92 6.21 38.17 2.34
558 597 8.080363 ACCAATTCAAAAGTTAACCCTTGTTA 57.920 30.769 13.92 7.02 35.87 2.41
559 598 6.953101 ACCAATTCAAAAGTTAACCCTTGTT 58.047 32.000 13.92 3.53 38.52 2.83
560 599 6.382859 AGACCAATTCAAAAGTTAACCCTTGT 59.617 34.615 13.92 0.00 0.00 3.16
561 600 6.816136 AGACCAATTCAAAAGTTAACCCTTG 58.184 36.000 0.88 6.47 0.00 3.61
562 601 6.609616 TGAGACCAATTCAAAAGTTAACCCTT 59.390 34.615 0.88 0.00 0.00 3.95
563 602 6.133356 TGAGACCAATTCAAAAGTTAACCCT 58.867 36.000 0.88 0.00 0.00 4.34
564 603 6.399639 TGAGACCAATTCAAAAGTTAACCC 57.600 37.500 0.88 0.00 0.00 4.11
565 604 8.887036 AAATGAGACCAATTCAAAAGTTAACC 57.113 30.769 0.88 0.00 0.00 2.85
626 665 3.884350 TGAGCTAGGCGCGTACGG 61.884 66.667 18.39 8.37 45.59 4.02
689 734 2.325082 GGCCATGTCACGTCACCAC 61.325 63.158 0.00 0.00 0.00 4.16
702 747 2.598394 AAAGCAGCGTGTGGCCAT 60.598 55.556 9.72 0.00 45.17 4.40
703 748 3.286751 GAAAGCAGCGTGTGGCCA 61.287 61.111 0.00 0.00 45.17 5.36
704 749 4.389576 CGAAAGCAGCGTGTGGCC 62.390 66.667 0.00 0.00 45.17 5.36
705 750 3.345808 TCGAAAGCAGCGTGTGGC 61.346 61.111 0.00 0.00 44.05 5.01
706 751 2.551270 GTCGAAAGCAGCGTGTGG 59.449 61.111 0.00 0.00 0.00 4.17
707 752 2.168621 CGTCGAAAGCAGCGTGTG 59.831 61.111 0.00 0.00 0.00 3.82
708 753 2.765250 ATCCGTCGAAAGCAGCGTGT 62.765 55.000 0.00 0.00 0.00 4.49
709 754 2.014093 GATCCGTCGAAAGCAGCGTG 62.014 60.000 0.00 0.00 0.00 5.34
710 755 1.805945 GATCCGTCGAAAGCAGCGT 60.806 57.895 0.00 0.00 0.00 5.07
711 756 2.517450 GGATCCGTCGAAAGCAGCG 61.517 63.158 0.00 0.00 0.00 5.18
712 757 2.174319 GGGATCCGTCGAAAGCAGC 61.174 63.158 5.45 0.00 0.00 5.25
713 758 0.391130 TTGGGATCCGTCGAAAGCAG 60.391 55.000 5.45 0.00 0.00 4.24
714 759 0.672401 GTTGGGATCCGTCGAAAGCA 60.672 55.000 5.45 0.00 0.00 3.91
715 760 1.366854 GGTTGGGATCCGTCGAAAGC 61.367 60.000 5.45 1.33 0.00 3.51
716 761 0.036765 TGGTTGGGATCCGTCGAAAG 60.037 55.000 5.45 0.00 0.00 2.62
717 762 0.036765 CTGGTTGGGATCCGTCGAAA 60.037 55.000 5.45 0.00 0.00 3.46
718 763 0.901114 TCTGGTTGGGATCCGTCGAA 60.901 55.000 5.45 0.00 0.00 3.71
719 764 1.304630 TCTGGTTGGGATCCGTCGA 60.305 57.895 5.45 0.00 0.00 4.20
720 765 1.153628 GTCTGGTTGGGATCCGTCG 60.154 63.158 5.45 0.00 0.00 5.12
721 766 1.153628 CGTCTGGTTGGGATCCGTC 60.154 63.158 5.45 0.00 0.00 4.79
722 767 2.978824 CGTCTGGTTGGGATCCGT 59.021 61.111 5.45 0.00 0.00 4.69
723 768 2.511600 GCGTCTGGTTGGGATCCG 60.512 66.667 5.45 0.00 0.00 4.18
791 837 2.570181 GTACGTGAGGTGACCGGG 59.430 66.667 6.32 0.00 0.00 5.73
860 906 3.120991 CGGTTCAAGACTTCAAGTAAGCG 60.121 47.826 7.72 7.72 38.93 4.68
872 918 1.860078 CGGTGCTTCGGTTCAAGAC 59.140 57.895 0.00 0.00 0.00 3.01
873 919 1.959226 GCGGTGCTTCGGTTCAAGA 60.959 57.895 1.94 0.00 0.00 3.02
875 921 3.342627 CGCGGTGCTTCGGTTCAA 61.343 61.111 0.00 0.00 0.00 2.69
891 937 2.433838 CTGACACTGGCTGGAGCG 60.434 66.667 0.00 0.00 43.26 5.03
922 968 0.868406 CAAGTGACCAGCGAAGGAAC 59.132 55.000 0.16 0.00 0.00 3.62
923 969 0.884704 GCAAGTGACCAGCGAAGGAA 60.885 55.000 0.16 0.00 0.00 3.36
924 970 1.301716 GCAAGTGACCAGCGAAGGA 60.302 57.895 0.16 0.00 0.00 3.36
932 978 0.813610 CACAGAACCGCAAGTGACCA 60.814 55.000 0.00 0.00 33.99 4.02
943 989 2.668280 GGAACGCTCGCACAGAACC 61.668 63.158 0.00 0.00 0.00 3.62
978 1024 0.604511 GGGACGACGAACCCAATGTT 60.605 55.000 22.52 0.00 44.96 2.71
1042 1092 1.805945 GTACCGCCAGCGACAAGAG 60.806 63.158 14.67 0.00 42.83 2.85
1045 1095 2.356553 GTGTACCGCCAGCGACAA 60.357 61.111 14.67 0.00 42.83 3.18
1167 1232 3.996150 AGTACACGAACGAAAGGAAGA 57.004 42.857 0.14 0.00 0.00 2.87
1169 1234 5.186996 AGTTAGTACACGAACGAAAGGAA 57.813 39.130 0.14 0.00 36.72 3.36
1188 1253 3.204526 CCGATCGACCAGTAGTCTAGTT 58.795 50.000 18.66 0.00 43.91 2.24
1189 1254 2.170187 ACCGATCGACCAGTAGTCTAGT 59.830 50.000 18.66 0.00 43.91 2.57
1190 1255 2.544686 CACCGATCGACCAGTAGTCTAG 59.455 54.545 18.66 0.00 43.91 2.43
1191 1256 2.558378 CACCGATCGACCAGTAGTCTA 58.442 52.381 18.66 0.00 43.91 2.59
1192 1257 1.380524 CACCGATCGACCAGTAGTCT 58.619 55.000 18.66 0.00 43.91 3.24
1193 1258 0.248539 GCACCGATCGACCAGTAGTC 60.249 60.000 18.66 0.00 42.54 2.59
1194 1259 0.680280 AGCACCGATCGACCAGTAGT 60.680 55.000 18.66 0.17 0.00 2.73
1200 1265 2.105128 CCTCAGCACCGATCGACC 59.895 66.667 18.66 4.03 0.00 4.79
1211 1276 1.078143 AAACCATCGCTCCCTCAGC 60.078 57.895 0.00 0.00 45.85 4.26
1578 1981 5.330295 CGAGTGCGAGTAGTAGTTTACATT 58.670 41.667 0.00 0.00 40.82 2.71
1603 2006 0.701303 GACGCGACAGAACTGTTACG 59.299 55.000 15.93 20.40 45.05 3.18
1609 2012 0.248743 TCAAACGACGCGACAGAACT 60.249 50.000 15.93 0.00 0.00 3.01
1632 2044 4.022849 ACCAACAGAGAAATTGTTAGCAGC 60.023 41.667 0.00 0.00 36.67 5.25
1637 2049 8.458573 AATACACACCAACAGAGAAATTGTTA 57.541 30.769 0.00 0.00 36.67 2.41
1638 2050 6.959639 ATACACACCAACAGAGAAATTGTT 57.040 33.333 0.00 0.00 39.23 2.83
1660 2074 5.086621 ACTTTCAGTAATCCCTGCCAAAAT 58.913 37.500 0.00 0.00 32.32 1.82
1695 2109 0.460284 GGATGCGAGAATGGTCACGT 60.460 55.000 0.00 0.00 39.68 4.49
1750 2229 0.860618 AGTAATCGAAGACGCGCGAC 60.861 55.000 39.36 31.45 42.51 5.19
1752 2231 0.860203 TCAGTAATCGAAGACGCGCG 60.860 55.000 30.96 30.96 42.51 6.86
1753 2232 0.566593 GTCAGTAATCGAAGACGCGC 59.433 55.000 5.73 0.00 42.51 6.86
1759 2238 0.800683 TGCGCCGTCAGTAATCGAAG 60.801 55.000 4.18 0.00 0.00 3.79
1763 2242 1.076332 AGTTTGCGCCGTCAGTAATC 58.924 50.000 4.18 0.00 0.00 1.75
1764 2243 0.796312 CAGTTTGCGCCGTCAGTAAT 59.204 50.000 4.18 0.00 0.00 1.89
1765 2244 0.249531 TCAGTTTGCGCCGTCAGTAA 60.250 50.000 4.18 0.00 0.00 2.24
1766 2245 0.249531 TTCAGTTTGCGCCGTCAGTA 60.250 50.000 4.18 0.00 0.00 2.74
1768 2247 0.238289 AATTCAGTTTGCGCCGTCAG 59.762 50.000 4.18 0.00 0.00 3.51
1769 2248 0.665835 AAATTCAGTTTGCGCCGTCA 59.334 45.000 4.18 0.00 0.00 4.35
1770 2249 1.052287 CAAATTCAGTTTGCGCCGTC 58.948 50.000 4.18 0.00 40.62 4.79
1771 2250 3.177883 CAAATTCAGTTTGCGCCGT 57.822 47.368 4.18 0.00 40.62 5.68
1778 2257 0.033366 GGGGCGTGCAAATTCAGTTT 59.967 50.000 0.00 0.00 0.00 2.66
1779 2258 1.665442 GGGGCGTGCAAATTCAGTT 59.335 52.632 0.00 0.00 0.00 3.16
1780 2259 2.625823 CGGGGCGTGCAAATTCAGT 61.626 57.895 0.00 0.00 0.00 3.41
1781 2260 2.179018 CGGGGCGTGCAAATTCAG 59.821 61.111 0.00 0.00 0.00 3.02
1782 2261 2.596046 ACGGGGCGTGCAAATTCA 60.596 55.556 0.00 0.00 39.18 2.57
1806 2285 3.624831 GAACGAAAGCGCGAACCGG 62.625 63.158 12.10 0.00 42.48 5.28
1807 2286 2.202008 GAACGAAAGCGCGAACCG 60.202 61.111 12.10 9.81 42.48 4.44
1808 2287 1.908066 ATGGAACGAAAGCGCGAACC 61.908 55.000 12.10 0.70 42.48 3.62
1809 2288 0.518559 GATGGAACGAAAGCGCGAAC 60.519 55.000 12.10 0.00 42.48 3.95
1810 2289 1.785321 GATGGAACGAAAGCGCGAA 59.215 52.632 12.10 0.00 42.48 4.70
1811 2290 2.441378 CGATGGAACGAAAGCGCGA 61.441 57.895 12.10 0.00 42.48 5.87
1812 2291 2.020016 CGATGGAACGAAAGCGCG 59.980 61.111 0.00 0.00 42.48 6.86
1813 2292 2.276680 GCGATGGAACGAAAGCGC 60.277 61.111 0.00 0.00 42.48 5.92
1814 2293 2.296692 CTGGCGATGGAACGAAAGCG 62.297 60.000 0.00 0.00 44.79 4.68
1815 2294 1.425428 CTGGCGATGGAACGAAAGC 59.575 57.895 0.00 0.00 35.09 3.51
1816 2295 0.673644 ACCTGGCGATGGAACGAAAG 60.674 55.000 0.00 0.00 35.09 2.62
1817 2296 0.250553 AACCTGGCGATGGAACGAAA 60.251 50.000 0.00 0.00 35.09 3.46
1818 2297 0.250553 AAACCTGGCGATGGAACGAA 60.251 50.000 0.00 0.00 35.09 3.85
1819 2298 0.953471 CAAACCTGGCGATGGAACGA 60.953 55.000 0.00 0.00 35.09 3.85
1820 2299 1.501741 CAAACCTGGCGATGGAACG 59.498 57.895 0.00 0.00 0.00 3.95
1821 2300 1.212751 GCAAACCTGGCGATGGAAC 59.787 57.895 0.00 0.00 0.00 3.62
1822 2301 1.976474 GGCAAACCTGGCGATGGAA 60.976 57.895 0.00 0.00 38.51 3.53
1823 2302 2.361104 GGCAAACCTGGCGATGGA 60.361 61.111 0.00 0.00 38.51 3.41
2143 2635 5.824904 ATTAACTGGTCACTTGATGATGC 57.175 39.130 0.00 0.00 40.28 3.91
2222 2714 0.039074 CGACGAAGGTCTGCTTCTGT 60.039 55.000 0.00 0.00 41.16 3.41
2229 2721 0.314302 AGGTTGTCGACGAAGGTCTG 59.686 55.000 7.17 0.00 41.16 3.51
2506 3032 3.771160 ATCGCTCCCTTCGCCGTT 61.771 61.111 0.00 0.00 0.00 4.44
2530 3056 2.261671 CCGTCCTCCGACACTTGG 59.738 66.667 0.00 0.00 39.11 3.61
2533 3059 1.972223 CTCACCGTCCTCCGACACT 60.972 63.158 0.00 0.00 39.11 3.55
2695 3221 0.901827 TCTAGGATGAAACTGCCGCA 59.098 50.000 0.00 0.00 0.00 5.69
2736 3268 7.279615 TGGATGATTACACCATAACAGGTAAG 58.720 38.462 0.00 0.00 40.77 2.34
2737 3269 7.201702 TGGATGATTACACCATAACAGGTAA 57.798 36.000 0.00 0.00 40.77 2.85
2738 3270 6.816616 TGGATGATTACACCATAACAGGTA 57.183 37.500 0.00 0.00 40.77 3.08
2739 3271 5.708736 TGGATGATTACACCATAACAGGT 57.291 39.130 0.00 0.00 44.48 4.00
2740 3272 7.255590 GGAAATGGATGATTACACCATAACAGG 60.256 40.741 0.00 0.00 42.59 4.00
2741 3273 7.285172 TGGAAATGGATGATTACACCATAACAG 59.715 37.037 0.00 0.00 42.59 3.16
2742 3274 7.122048 TGGAAATGGATGATTACACCATAACA 58.878 34.615 0.00 0.00 42.59 2.41
2804 3336 4.330074 CGATTCAGGAAGACGTAAATTGCT 59.670 41.667 0.00 0.00 0.00 3.91
2826 3358 2.100916 AGACGATGAAGTAACCATCCCG 59.899 50.000 0.00 0.00 37.67 5.14
2827 3359 3.492829 GGAGACGATGAAGTAACCATCCC 60.493 52.174 0.00 0.00 37.67 3.85
2835 3367 2.166459 CCAGCAAGGAGACGATGAAGTA 59.834 50.000 0.00 0.00 41.22 2.24
2837 3369 1.649664 CCAGCAAGGAGACGATGAAG 58.350 55.000 0.00 0.00 41.22 3.02
2844 3376 1.067354 CCAATTTGCCAGCAAGGAGAC 60.067 52.381 5.08 0.00 41.22 3.36
2856 3388 0.248458 CCGTACGATGCCCAATTTGC 60.248 55.000 18.76 0.00 0.00 3.68
2897 3429 2.119801 GTGTCAAGCACCATCTCCAT 57.880 50.000 0.00 0.00 42.10 3.41
2912 3444 4.357947 TCCTCGCGCCAGTGTGTC 62.358 66.667 0.00 0.00 0.00 3.67
2913 3445 4.664677 GTCCTCGCGCCAGTGTGT 62.665 66.667 0.00 0.00 0.00 3.72
2914 3446 4.363990 AGTCCTCGCGCCAGTGTG 62.364 66.667 0.00 0.00 0.00 3.82
2915 3447 4.363990 CAGTCCTCGCGCCAGTGT 62.364 66.667 0.00 0.00 0.00 3.55
2916 3448 3.573772 TTCAGTCCTCGCGCCAGTG 62.574 63.158 0.00 0.31 0.00 3.66
2917 3449 3.288308 CTTCAGTCCTCGCGCCAGT 62.288 63.158 0.00 0.00 0.00 4.00
2918 3450 2.507992 CTTCAGTCCTCGCGCCAG 60.508 66.667 0.00 0.00 0.00 4.85
2940 3472 6.455360 ACAAAATATACATGCCAAGTCCTG 57.545 37.500 0.00 0.00 0.00 3.86
2977 4321 1.452025 CCGATGCGTCGTTGATATGAC 59.548 52.381 25.56 0.00 46.25 3.06
2994 4338 1.451927 GGCAAGATGGCATGACCGA 60.452 57.895 3.81 0.00 43.14 4.69
3009 4353 2.118233 TTACCAGTGGATGTGCGGCA 62.118 55.000 18.40 0.00 0.00 5.69
3018 4362 1.568504 ATCGCTTCCTTACCAGTGGA 58.431 50.000 18.40 0.00 0.00 4.02
3019 4363 2.009774 CAATCGCTTCCTTACCAGTGG 58.990 52.381 7.91 7.91 0.00 4.00
3047 4391 2.995482 GCGATGTAGTTGACGCGG 59.005 61.111 12.47 0.00 41.49 6.46
3068 4412 4.690719 CACGTAAGGGTGCGGGCA 62.691 66.667 0.00 0.00 46.39 5.36
3099 4449 1.750399 CCCATTCGTCCTTGGCAGG 60.750 63.158 0.00 0.00 42.50 4.85
3103 4453 1.453155 CTTCACCCATTCGTCCTTGG 58.547 55.000 0.00 0.00 0.00 3.61
3104 4454 1.003118 TCCTTCACCCATTCGTCCTTG 59.997 52.381 0.00 0.00 0.00 3.61
3114 4464 2.610859 GGCCTCCTCCTTCACCCA 60.611 66.667 0.00 0.00 0.00 4.51
3141 4494 2.026729 CCTTCCTTTTCCTCTCCTCCAC 60.027 54.545 0.00 0.00 0.00 4.02
3142 4495 2.269940 CCTTCCTTTTCCTCTCCTCCA 58.730 52.381 0.00 0.00 0.00 3.86
3159 4512 0.032540 CTTTTCTTGCAAGCGGCCTT 59.967 50.000 21.99 0.00 43.89 4.35
3167 4520 1.238439 CGGCCTCTCTTTTCTTGCAA 58.762 50.000 0.00 0.00 0.00 4.08
3212 4565 0.320247 AGCTCTTCTTCACGGTGCAG 60.320 55.000 2.51 1.75 0.00 4.41
3224 4577 1.068921 GATCTCCGCCCAGCTCTTC 59.931 63.158 0.00 0.00 0.00 2.87
3230 4583 0.105039 GTACTTGGATCTCCGCCCAG 59.895 60.000 0.00 0.00 39.43 4.45
3264 4617 1.399791 CATTCTCTTTCTCGGCCTTGC 59.600 52.381 0.00 0.00 0.00 4.01
3283 4637 4.357947 GCTGGGCAGACGTCGTCA 62.358 66.667 26.17 5.87 34.60 4.35
3297 4651 2.555199 GTAGCTACTTCACCCATGCTG 58.445 52.381 16.88 0.00 32.72 4.41
3305 4659 2.166664 CAGGTGGAGGTAGCTACTTCAC 59.833 54.545 30.28 26.46 34.36 3.18
3332 4686 7.344095 TGCTCTAAAATACTACTACTCCCAC 57.656 40.000 0.00 0.00 0.00 4.61
3405 4792 8.970020 TCAAAGCCATGTAAAGATGTCATTATT 58.030 29.630 0.00 0.00 0.00 1.40
3410 4797 5.181811 CACTCAAAGCCATGTAAAGATGTCA 59.818 40.000 0.00 0.00 0.00 3.58
3469 4856 7.371159 TGTCAAAGAAAATTGTGTGTGTTGTA 58.629 30.769 0.00 0.00 0.00 2.41
3481 4868 5.352846 CCCAAACGGTTTGTCAAAGAAAATT 59.647 36.000 26.67 0.00 38.98 1.82
3482 4869 4.873259 CCCAAACGGTTTGTCAAAGAAAAT 59.127 37.500 26.67 0.00 38.98 1.82
3486 4873 2.724454 TCCCAAACGGTTTGTCAAAGA 58.276 42.857 26.67 14.82 38.98 2.52
3520 4907 9.174166 GCAGAGTAAATAAAAATGAAGGGAGTA 57.826 33.333 0.00 0.00 0.00 2.59
3521 4908 7.669722 TGCAGAGTAAATAAAAATGAAGGGAGT 59.330 33.333 0.00 0.00 0.00 3.85
3522 4909 8.055279 TGCAGAGTAAATAAAAATGAAGGGAG 57.945 34.615 0.00 0.00 0.00 4.30
3523 4910 8.593945 ATGCAGAGTAAATAAAAATGAAGGGA 57.406 30.769 0.00 0.00 0.00 4.20
3541 4928 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
3542 4929 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
3543 4930 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.