Multiple sequence alignment - TraesCS2D01G176800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G176800 chr2D 100.000 3645 0 0 1 3645 120257402 120253758 0.000000e+00 6732
1 TraesCS2D01G176800 chr2D 98.246 57 1 0 3338 3394 120254013 120253957 2.320000e-17 100
2 TraesCS2D01G176800 chr2D 98.246 57 1 0 3390 3446 120254065 120254009 2.320000e-17 100
3 TraesCS2D01G176800 chr2A 91.922 3194 153 40 247 3394 124214283 124211149 0.000000e+00 4372
4 TraesCS2D01G176800 chr2A 96.498 257 8 1 3390 3645 124211205 124210949 1.210000e-114 424
5 TraesCS2D01G176800 chr2B 89.437 1723 94 32 248 1936 173206667 173204999 0.000000e+00 2093
6 TraesCS2D01G176800 chr2B 95.257 738 33 1 1968 2705 173205000 173204265 0.000000e+00 1168
7 TraesCS2D01G176800 chr2B 94.394 660 18 7 2743 3394 173204270 173203622 0.000000e+00 996
8 TraesCS2D01G176800 chr2B 95.312 256 11 1 3390 3645 173203678 173203424 4.380000e-109 405
9 TraesCS2D01G176800 chr6D 98.780 246 3 0 1 246 439658937 439659182 4.320000e-119 438
10 TraesCS2D01G176800 chr7D 98.374 246 4 0 1 246 492212131 492211886 2.010000e-117 433
11 TraesCS2D01G176800 chr7D 83.453 139 22 1 109 246 556322183 556322321 1.060000e-25 128
12 TraesCS2D01G176800 chr4D 97.551 245 5 1 1 245 29026410 29026167 5.630000e-113 418
13 TraesCS2D01G176800 chr7B 85.772 246 34 1 2 246 426834384 426834139 3.610000e-65 259
14 TraesCS2D01G176800 chr7B 95.588 68 3 0 1 68 521587145 521587078 3.850000e-20 110
15 TraesCS2D01G176800 chr7A 85.306 245 28 6 2 244 473808548 473808310 2.810000e-61 246
16 TraesCS2D01G176800 chr6A 81.857 237 34 8 14 245 74718109 74717877 1.340000e-44 191
17 TraesCS2D01G176800 chr6A 81.857 237 34 8 14 245 74729789 74729557 1.340000e-44 191
18 TraesCS2D01G176800 chr6A 81.857 237 34 8 14 245 74741864 74741632 1.340000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G176800 chr2D 120253758 120257402 3644 True 2310.666667 6732 98.830667 1 3645 3 chr2D.!!$R1 3644
1 TraesCS2D01G176800 chr2A 124210949 124214283 3334 True 2398.000000 4372 94.210000 247 3645 2 chr2A.!!$R1 3398
2 TraesCS2D01G176800 chr2B 173203424 173206667 3243 True 1165.500000 2093 93.600000 248 3645 4 chr2B.!!$R1 3397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.107606 ATGTACCACCGGCGCATTTA 60.108 50.0 10.83 0.0 0.00 1.40 F
1638 1704 0.101939 CCTACGCTACGGACCTTTCC 59.898 60.0 0.00 0.0 38.77 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1803 0.98423 CTCAACCCAGGGAGCAGTTA 59.016 55.0 14.54 0.0 0.0 2.24 R
3415 3508 0.03601 CCTTGTGCATCCGTCTTCCT 60.036 55.0 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.399245 TGTTATTAATTTAGGGGTGTTCTGC 57.601 36.000 0.00 0.00 0.00 4.26
35 36 6.948886 TGTTATTAATTTAGGGGTGTTCTGCA 59.051 34.615 0.00 0.00 0.00 4.41
36 37 7.451877 TGTTATTAATTTAGGGGTGTTCTGCAA 59.548 33.333 0.00 0.00 0.00 4.08
37 38 6.926630 ATTAATTTAGGGGTGTTCTGCAAA 57.073 33.333 0.00 0.00 0.00 3.68
38 39 6.732896 TTAATTTAGGGGTGTTCTGCAAAA 57.267 33.333 0.00 0.00 0.00 2.44
39 40 5.622346 AATTTAGGGGTGTTCTGCAAAAA 57.378 34.783 0.00 0.00 0.00 1.94
54 55 3.346426 AAAAACCATCGCTCCAGCT 57.654 47.368 0.00 0.00 39.32 4.24
55 56 1.168714 AAAAACCATCGCTCCAGCTC 58.831 50.000 0.00 0.00 39.32 4.09
56 57 0.678048 AAAACCATCGCTCCAGCTCC 60.678 55.000 0.00 0.00 39.32 4.70
57 58 1.841302 AAACCATCGCTCCAGCTCCA 61.841 55.000 0.00 0.00 39.32 3.86
58 59 2.202987 CCATCGCTCCAGCTCCAC 60.203 66.667 0.00 0.00 39.32 4.02
59 60 2.202987 CATCGCTCCAGCTCCACC 60.203 66.667 0.00 0.00 39.32 4.61
60 61 2.364842 ATCGCTCCAGCTCCACCT 60.365 61.111 0.00 0.00 39.32 4.00
61 62 2.430610 ATCGCTCCAGCTCCACCTC 61.431 63.158 0.00 0.00 39.32 3.85
62 63 4.504916 CGCTCCAGCTCCACCTCG 62.505 72.222 0.00 0.00 39.32 4.63
63 64 3.386237 GCTCCAGCTCCACCTCGT 61.386 66.667 0.00 0.00 38.21 4.18
64 65 2.888863 CTCCAGCTCCACCTCGTC 59.111 66.667 0.00 0.00 0.00 4.20
65 66 1.979155 CTCCAGCTCCACCTCGTCA 60.979 63.158 0.00 0.00 0.00 4.35
66 67 2.219325 CTCCAGCTCCACCTCGTCAC 62.219 65.000 0.00 0.00 0.00 3.67
67 68 2.279069 CCAGCTCCACCTCGTCACT 61.279 63.158 0.00 0.00 0.00 3.41
68 69 1.080230 CAGCTCCACCTCGTCACTG 60.080 63.158 0.00 0.00 0.00 3.66
69 70 1.228583 AGCTCCACCTCGTCACTGA 60.229 57.895 0.00 0.00 0.00 3.41
70 71 1.080434 GCTCCACCTCGTCACTGAC 60.080 63.158 0.00 0.00 0.00 3.51
79 80 4.057428 GTCACTGACGGCGAGCCT 62.057 66.667 16.62 0.00 0.00 4.58
80 81 4.056125 TCACTGACGGCGAGCCTG 62.056 66.667 16.62 8.83 0.00 4.85
90 91 4.923942 CGAGCCTGGCGCCATCAT 62.924 66.667 32.87 18.72 38.78 2.45
91 92 3.285215 GAGCCTGGCGCCATCATG 61.285 66.667 32.87 18.63 38.78 3.07
92 93 4.119363 AGCCTGGCGCCATCATGT 62.119 61.111 32.87 10.49 38.78 3.21
93 94 3.589881 GCCTGGCGCCATCATGTC 61.590 66.667 32.87 3.59 0.00 3.06
94 95 2.124612 CCTGGCGCCATCATGTCA 60.125 61.111 32.87 3.62 0.00 3.58
95 96 2.475466 CCTGGCGCCATCATGTCAC 61.475 63.158 32.87 0.00 0.00 3.67
96 97 2.816360 CTGGCGCCATCATGTCACG 61.816 63.158 32.87 11.30 0.00 4.35
98 99 4.241999 GCGCCATCATGTCACGCC 62.242 66.667 0.00 0.00 43.58 5.68
99 100 2.819154 CGCCATCATGTCACGCCA 60.819 61.111 0.00 0.00 0.00 5.69
100 101 2.793946 GCCATCATGTCACGCCAC 59.206 61.111 0.00 0.00 0.00 5.01
101 102 2.039974 GCCATCATGTCACGCCACA 61.040 57.895 0.00 0.00 0.00 4.17
102 103 1.985447 GCCATCATGTCACGCCACAG 61.985 60.000 0.00 0.00 0.00 3.66
103 104 0.391528 CCATCATGTCACGCCACAGA 60.392 55.000 0.00 0.00 0.00 3.41
104 105 1.441738 CATCATGTCACGCCACAGAA 58.558 50.000 0.00 0.00 0.00 3.02
105 106 1.395954 CATCATGTCACGCCACAGAAG 59.604 52.381 0.00 0.00 0.00 2.85
106 107 0.950555 TCATGTCACGCCACAGAAGC 60.951 55.000 0.00 0.00 0.00 3.86
114 115 4.615901 CCACAGAAGCGGCATACA 57.384 55.556 1.45 0.00 0.00 2.29
115 116 2.089854 CCACAGAAGCGGCATACAC 58.910 57.895 1.45 0.00 0.00 2.90
116 117 0.673333 CCACAGAAGCGGCATACACA 60.673 55.000 1.45 0.00 0.00 3.72
117 118 0.723414 CACAGAAGCGGCATACACAG 59.277 55.000 1.45 0.00 0.00 3.66
118 119 1.021390 ACAGAAGCGGCATACACAGC 61.021 55.000 1.45 0.00 0.00 4.40
119 120 0.742281 CAGAAGCGGCATACACAGCT 60.742 55.000 1.45 0.00 42.35 4.24
120 121 0.824109 AGAAGCGGCATACACAGCTA 59.176 50.000 1.45 0.00 39.25 3.32
121 122 0.931005 GAAGCGGCATACACAGCTAC 59.069 55.000 1.45 0.00 39.25 3.58
122 123 0.249120 AAGCGGCATACACAGCTACA 59.751 50.000 1.45 0.00 39.25 2.74
123 124 0.465705 AGCGGCATACACAGCTACAT 59.534 50.000 1.45 0.00 38.29 2.29
124 125 1.686587 AGCGGCATACACAGCTACATA 59.313 47.619 1.45 0.00 38.29 2.29
125 126 1.792949 GCGGCATACACAGCTACATAC 59.207 52.381 0.00 0.00 0.00 2.39
126 127 2.051423 CGGCATACACAGCTACATACG 58.949 52.381 0.00 0.00 0.00 3.06
127 128 2.287368 CGGCATACACAGCTACATACGA 60.287 50.000 0.00 0.00 0.00 3.43
128 129 3.309388 GGCATACACAGCTACATACGAG 58.691 50.000 0.00 0.00 0.00 4.18
129 130 3.004419 GGCATACACAGCTACATACGAGA 59.996 47.826 0.00 0.00 0.00 4.04
130 131 4.499188 GGCATACACAGCTACATACGAGAA 60.499 45.833 0.00 0.00 0.00 2.87
131 132 5.223382 GCATACACAGCTACATACGAGAAT 58.777 41.667 0.00 0.00 0.00 2.40
132 133 5.117745 GCATACACAGCTACATACGAGAATG 59.882 44.000 0.00 0.00 0.00 2.67
133 134 4.983671 ACACAGCTACATACGAGAATGA 57.016 40.909 0.00 0.00 0.00 2.57
134 135 5.324784 ACACAGCTACATACGAGAATGAA 57.675 39.130 0.00 0.00 0.00 2.57
135 136 5.720202 ACACAGCTACATACGAGAATGAAA 58.280 37.500 0.00 0.00 0.00 2.69
136 137 5.577164 ACACAGCTACATACGAGAATGAAAC 59.423 40.000 0.00 0.00 0.00 2.78
137 138 4.798907 ACAGCTACATACGAGAATGAAACG 59.201 41.667 0.00 0.00 0.00 3.60
138 139 4.798907 CAGCTACATACGAGAATGAAACGT 59.201 41.667 0.00 0.00 42.70 3.99
139 140 5.969435 CAGCTACATACGAGAATGAAACGTA 59.031 40.000 0.00 0.00 44.32 3.57
141 142 7.801783 CAGCTACATACGAGAATGAAACGTATA 59.198 37.037 0.00 0.00 46.49 1.47
142 143 8.512956 AGCTACATACGAGAATGAAACGTATAT 58.487 33.333 0.00 0.00 46.49 0.86
143 144 8.576281 GCTACATACGAGAATGAAACGTATATG 58.424 37.037 0.00 0.00 46.49 1.78
144 145 7.334574 ACATACGAGAATGAAACGTATATGC 57.665 36.000 0.00 0.00 46.49 3.14
145 146 6.921307 ACATACGAGAATGAAACGTATATGCA 59.079 34.615 0.00 0.00 46.49 3.96
146 147 5.637104 ACGAGAATGAAACGTATATGCAC 57.363 39.130 0.00 0.00 38.47 4.57
147 148 4.506654 ACGAGAATGAAACGTATATGCACC 59.493 41.667 0.00 0.00 38.47 5.01
148 149 4.745125 CGAGAATGAAACGTATATGCACCT 59.255 41.667 0.00 0.00 0.00 4.00
149 150 5.234329 CGAGAATGAAACGTATATGCACCTT 59.766 40.000 0.00 0.00 0.00 3.50
150 151 6.363577 AGAATGAAACGTATATGCACCTTG 57.636 37.500 0.00 0.00 0.00 3.61
151 152 6.112734 AGAATGAAACGTATATGCACCTTGA 58.887 36.000 0.00 0.00 0.00 3.02
152 153 5.991328 ATGAAACGTATATGCACCTTGAG 57.009 39.130 0.00 0.00 0.00 3.02
153 154 5.079689 TGAAACGTATATGCACCTTGAGA 57.920 39.130 0.00 0.00 0.00 3.27
154 155 4.868171 TGAAACGTATATGCACCTTGAGAC 59.132 41.667 0.00 0.00 0.00 3.36
155 156 4.465632 AACGTATATGCACCTTGAGACA 57.534 40.909 0.00 0.00 0.00 3.41
156 157 4.465632 ACGTATATGCACCTTGAGACAA 57.534 40.909 0.00 0.00 0.00 3.18
157 158 4.433615 ACGTATATGCACCTTGAGACAAG 58.566 43.478 0.00 4.73 0.00 3.16
158 159 4.081642 ACGTATATGCACCTTGAGACAAGT 60.082 41.667 9.99 0.00 0.00 3.16
159 160 4.870426 CGTATATGCACCTTGAGACAAGTT 59.130 41.667 9.99 0.00 0.00 2.66
160 161 5.005779 CGTATATGCACCTTGAGACAAGTTC 59.994 44.000 9.99 1.13 0.00 3.01
161 162 3.498774 ATGCACCTTGAGACAAGTTCT 57.501 42.857 9.99 0.00 37.23 3.01
162 163 2.564771 TGCACCTTGAGACAAGTTCTG 58.435 47.619 9.99 4.50 33.22 3.02
163 164 2.170397 TGCACCTTGAGACAAGTTCTGA 59.830 45.455 9.99 0.00 33.22 3.27
164 165 2.545946 GCACCTTGAGACAAGTTCTGAC 59.454 50.000 9.99 0.00 33.22 3.51
165 166 3.797039 CACCTTGAGACAAGTTCTGACA 58.203 45.455 9.99 0.00 33.22 3.58
166 167 4.384056 CACCTTGAGACAAGTTCTGACAT 58.616 43.478 9.99 0.00 33.22 3.06
167 168 4.450419 CACCTTGAGACAAGTTCTGACATC 59.550 45.833 9.99 0.00 33.22 3.06
168 169 4.101585 ACCTTGAGACAAGTTCTGACATCA 59.898 41.667 9.99 0.00 33.22 3.07
169 170 4.689812 CCTTGAGACAAGTTCTGACATCAG 59.310 45.833 2.24 2.24 45.08 2.90
170 171 4.944619 TGAGACAAGTTCTGACATCAGT 57.055 40.909 8.70 0.00 44.12 3.41
171 172 5.282055 TGAGACAAGTTCTGACATCAGTT 57.718 39.130 8.70 0.00 44.12 3.16
172 173 5.674525 TGAGACAAGTTCTGACATCAGTTT 58.325 37.500 8.70 0.65 44.12 2.66
173 174 6.115446 TGAGACAAGTTCTGACATCAGTTTT 58.885 36.000 8.70 0.34 44.12 2.43
174 175 6.258727 TGAGACAAGTTCTGACATCAGTTTTC 59.741 38.462 8.70 0.02 44.12 2.29
175 176 5.529060 AGACAAGTTCTGACATCAGTTTTCC 59.471 40.000 8.70 0.00 44.12 3.13
176 177 4.273480 ACAAGTTCTGACATCAGTTTTCCG 59.727 41.667 8.70 0.00 44.12 4.30
177 178 4.073293 AGTTCTGACATCAGTTTTCCGT 57.927 40.909 8.70 0.00 44.12 4.69
178 179 5.209818 AGTTCTGACATCAGTTTTCCGTA 57.790 39.130 8.70 0.00 44.12 4.02
179 180 5.794894 AGTTCTGACATCAGTTTTCCGTAT 58.205 37.500 8.70 0.00 44.12 3.06
180 181 6.231211 AGTTCTGACATCAGTTTTCCGTATT 58.769 36.000 8.70 0.00 44.12 1.89
181 182 6.710744 AGTTCTGACATCAGTTTTCCGTATTT 59.289 34.615 8.70 0.00 44.12 1.40
182 183 7.228706 AGTTCTGACATCAGTTTTCCGTATTTT 59.771 33.333 8.70 0.00 44.12 1.82
183 184 7.504924 TCTGACATCAGTTTTCCGTATTTTT 57.495 32.000 8.70 0.00 44.12 1.94
184 185 7.581476 TCTGACATCAGTTTTCCGTATTTTTC 58.419 34.615 8.70 0.00 44.12 2.29
185 186 7.227711 TCTGACATCAGTTTTCCGTATTTTTCA 59.772 33.333 8.70 0.00 44.12 2.69
186 187 7.708051 TGACATCAGTTTTCCGTATTTTTCAA 58.292 30.769 0.00 0.00 0.00 2.69
187 188 7.646130 TGACATCAGTTTTCCGTATTTTTCAAC 59.354 33.333 0.00 0.00 0.00 3.18
188 189 7.712797 ACATCAGTTTTCCGTATTTTTCAACT 58.287 30.769 0.00 0.00 0.00 3.16
189 190 8.194769 ACATCAGTTTTCCGTATTTTTCAACTT 58.805 29.630 0.00 0.00 0.00 2.66
190 191 7.979115 TCAGTTTTCCGTATTTTTCAACTTG 57.021 32.000 0.00 0.00 0.00 3.16
191 192 7.540299 TCAGTTTTCCGTATTTTTCAACTTGT 58.460 30.769 0.00 0.00 0.00 3.16
192 193 7.486551 TCAGTTTTCCGTATTTTTCAACTTGTG 59.513 33.333 0.00 0.00 0.00 3.33
193 194 7.486551 CAGTTTTCCGTATTTTTCAACTTGTGA 59.513 33.333 0.00 0.00 0.00 3.58
194 195 7.486870 AGTTTTCCGTATTTTTCAACTTGTGAC 59.513 33.333 0.00 0.00 35.39 3.67
195 196 6.438259 TTCCGTATTTTTCAACTTGTGACA 57.562 33.333 0.00 0.00 35.39 3.58
196 197 5.812652 TCCGTATTTTTCAACTTGTGACAC 58.187 37.500 0.00 0.00 35.39 3.67
197 198 4.973663 CCGTATTTTTCAACTTGTGACACC 59.026 41.667 2.45 0.00 35.39 4.16
198 199 5.449314 CCGTATTTTTCAACTTGTGACACCA 60.449 40.000 2.45 0.00 35.39 4.17
199 200 6.030849 CGTATTTTTCAACTTGTGACACCAA 58.969 36.000 2.45 0.00 35.39 3.67
200 201 6.528423 CGTATTTTTCAACTTGTGACACCAAA 59.472 34.615 2.45 0.00 35.39 3.28
201 202 6.720012 ATTTTTCAACTTGTGACACCAAAC 57.280 33.333 2.45 0.00 35.39 2.93
202 203 5.461032 TTTTCAACTTGTGACACCAAACT 57.539 34.783 2.45 0.00 35.39 2.66
203 204 4.433186 TTCAACTTGTGACACCAAACTG 57.567 40.909 2.45 0.00 35.39 3.16
204 205 2.163412 TCAACTTGTGACACCAAACTGC 59.837 45.455 2.45 0.00 0.00 4.40
205 206 1.832883 ACTTGTGACACCAAACTGCA 58.167 45.000 2.45 0.00 0.00 4.41
206 207 1.472480 ACTTGTGACACCAAACTGCAC 59.528 47.619 2.45 0.00 0.00 4.57
207 208 1.472082 CTTGTGACACCAAACTGCACA 59.528 47.619 2.45 0.00 37.66 4.57
208 209 1.761449 TGTGACACCAAACTGCACAT 58.239 45.000 2.45 0.00 34.85 3.21
209 210 1.404748 TGTGACACCAAACTGCACATG 59.595 47.619 2.45 0.00 34.85 3.21
210 211 1.405105 GTGACACCAAACTGCACATGT 59.595 47.619 0.00 0.00 0.00 3.21
211 212 2.098614 TGACACCAAACTGCACATGTT 58.901 42.857 0.00 0.00 0.00 2.71
212 213 2.159268 TGACACCAAACTGCACATGTTG 60.159 45.455 0.00 0.00 0.00 3.33
213 214 1.824230 ACACCAAACTGCACATGTTGT 59.176 42.857 0.00 0.00 0.00 3.32
228 229 3.980646 TGTTGTGCAACTTCATGTACC 57.019 42.857 14.97 0.00 41.67 3.34
229 230 3.282885 TGTTGTGCAACTTCATGTACCA 58.717 40.909 14.97 0.00 41.67 3.25
230 231 3.066064 TGTTGTGCAACTTCATGTACCAC 59.934 43.478 14.97 0.00 41.67 4.16
231 232 2.226330 TGTGCAACTTCATGTACCACC 58.774 47.619 0.00 0.00 38.04 4.61
232 233 1.196808 GTGCAACTTCATGTACCACCG 59.803 52.381 0.00 0.00 30.71 4.94
233 234 0.802494 GCAACTTCATGTACCACCGG 59.198 55.000 0.00 0.00 0.00 5.28
234 235 0.802494 CAACTTCATGTACCACCGGC 59.198 55.000 0.00 0.00 0.00 6.13
235 236 0.672401 AACTTCATGTACCACCGGCG 60.672 55.000 0.00 0.00 0.00 6.46
236 237 2.435234 TTCATGTACCACCGGCGC 60.435 61.111 0.00 0.00 0.00 6.53
237 238 3.241515 TTCATGTACCACCGGCGCA 62.242 57.895 10.83 0.00 0.00 6.09
238 239 2.513666 CATGTACCACCGGCGCAT 60.514 61.111 10.83 0.00 0.00 4.73
239 240 2.112198 CATGTACCACCGGCGCATT 61.112 57.895 10.83 0.00 0.00 3.56
240 241 1.377987 ATGTACCACCGGCGCATTT 60.378 52.632 10.83 0.00 0.00 2.32
241 242 0.107606 ATGTACCACCGGCGCATTTA 60.108 50.000 10.83 0.00 0.00 1.40
242 243 1.020333 TGTACCACCGGCGCATTTAC 61.020 55.000 10.83 1.83 0.00 2.01
243 244 1.449956 TACCACCGGCGCATTTACC 60.450 57.895 10.83 0.00 0.00 2.85
244 245 1.901654 TACCACCGGCGCATTTACCT 61.902 55.000 10.83 0.00 0.00 3.08
245 246 2.469516 CCACCGGCGCATTTACCTC 61.470 63.158 10.83 0.00 0.00 3.85
252 253 1.361793 GCGCATTTACCTCGGTACAA 58.638 50.000 0.30 0.00 0.00 2.41
309 310 5.070313 AGAGATATTTGAGGGAGAGCAAGAC 59.930 44.000 0.00 0.00 0.00 3.01
310 311 2.393271 ATTTGAGGGAGAGCAAGACG 57.607 50.000 0.00 0.00 0.00 4.18
320 321 2.431057 GAGAGCAAGACGGGGAGAAATA 59.569 50.000 0.00 0.00 0.00 1.40
321 322 2.168728 AGAGCAAGACGGGGAGAAATAC 59.831 50.000 0.00 0.00 0.00 1.89
322 323 2.168728 GAGCAAGACGGGGAGAAATACT 59.831 50.000 0.00 0.00 0.00 2.12
323 324 3.371965 AGCAAGACGGGGAGAAATACTA 58.628 45.455 0.00 0.00 0.00 1.82
395 399 2.238521 GGATCTGACCAAACAGGCAAA 58.761 47.619 0.00 0.00 43.14 3.68
473 488 3.803082 CACGCGCACATGGGGAAG 61.803 66.667 5.73 0.00 0.00 3.46
476 491 4.424711 GCGCACATGGGGAAGGGA 62.425 66.667 0.30 0.00 0.00 4.20
477 492 2.354729 CGCACATGGGGAAGGGAA 59.645 61.111 0.00 0.00 0.00 3.97
524 539 4.861102 AAAATCAACCCAAGCAAGAGAG 57.139 40.909 0.00 0.00 0.00 3.20
541 556 6.623767 GCAAGAGAGAGAGAGAGAGAAAGAAC 60.624 46.154 0.00 0.00 0.00 3.01
547 562 5.183140 AGAGAGAGAGAGAAAGAACGAAAGG 59.817 44.000 0.00 0.00 0.00 3.11
594 609 4.825679 CCCACCTCCCCCTCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
595 610 3.700350 CCACCTCCCCCTCCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
596 611 2.041405 CACCTCCCCCTCCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
597 612 3.369388 ACCTCCCCCTCCCTCTCC 61.369 72.222 0.00 0.00 0.00 3.71
598 613 3.039526 CCTCCCCCTCCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
599 614 2.612251 CTCCCCCTCCCTCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
600 615 3.036959 TCCCCCTCCCTCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
627 648 2.293865 CGAACCACGTGCGAAATTTCG 61.294 52.381 31.23 31.23 44.05 3.46
757 786 1.556451 GGGGCTGGATTTCAATTTGCT 59.444 47.619 0.00 0.00 0.00 3.91
760 790 4.323409 GGGGCTGGATTTCAATTTGCTAAA 60.323 41.667 0.00 0.00 0.00 1.85
761 791 4.872124 GGGCTGGATTTCAATTTGCTAAAG 59.128 41.667 0.00 0.00 0.00 1.85
763 793 5.173664 GCTGGATTTCAATTTGCTAAAGCT 58.826 37.500 3.26 0.00 42.66 3.74
786 816 1.038280 ACCGCGTCCTCCCTTATAAG 58.962 55.000 4.92 5.43 0.00 1.73
967 1003 0.196118 TTTGGAGGAAGGGGAGGAGT 59.804 55.000 0.00 0.00 0.00 3.85
968 1004 0.252742 TTGGAGGAAGGGGAGGAGTC 60.253 60.000 0.00 0.00 0.00 3.36
983 1019 1.662438 GAGTCTCGGAGGTGGAGCTG 61.662 65.000 4.96 0.00 0.00 4.24
1130 1169 1.177401 GGAATCAACAAGGGTGAGCC 58.823 55.000 0.00 0.00 0.00 4.70
1159 1198 1.678970 GGGATTTGGGCGCTTCACT 60.679 57.895 7.64 0.00 0.00 3.41
1267 1329 4.911390 AGATCTGAGTTTGTTTTCCCGAT 58.089 39.130 0.00 0.00 0.00 4.18
1300 1362 1.139095 GGTCCTCTTCGCGTCGATT 59.861 57.895 5.77 0.00 35.23 3.34
1393 1455 4.767255 GGTGAGGCCGAGGCACAG 62.767 72.222 16.65 0.00 44.11 3.66
1426 1488 3.256960 AAGAGCCCTTTGCCCGGA 61.257 61.111 0.73 0.00 42.71 5.14
1471 1533 1.202330 AGAAGGAGACCATGGAGCTG 58.798 55.000 21.47 0.00 0.00 4.24
1558 1620 5.335976 GCCACTTTCCTCTACTCCATTTTTG 60.336 44.000 0.00 0.00 0.00 2.44
1587 1649 1.929836 CGCTAGTGCAAGTCAGAATCC 59.070 52.381 0.00 0.00 39.64 3.01
1588 1650 2.675032 CGCTAGTGCAAGTCAGAATCCA 60.675 50.000 0.00 0.00 39.64 3.41
1589 1651 3.539604 GCTAGTGCAAGTCAGAATCCAT 58.460 45.455 0.00 0.00 39.41 3.41
1590 1652 4.697514 GCTAGTGCAAGTCAGAATCCATA 58.302 43.478 0.00 0.00 39.41 2.74
1591 1653 5.303971 GCTAGTGCAAGTCAGAATCCATAT 58.696 41.667 0.00 0.00 39.41 1.78
1592 1654 6.459066 GCTAGTGCAAGTCAGAATCCATATA 58.541 40.000 0.00 0.00 39.41 0.86
1636 1702 0.969409 AGCCTACGCTACGGACCTTT 60.969 55.000 0.00 0.00 46.08 3.11
1637 1703 0.527169 GCCTACGCTACGGACCTTTC 60.527 60.000 0.00 0.00 0.00 2.62
1638 1704 0.101939 CCTACGCTACGGACCTTTCC 59.898 60.000 0.00 0.00 38.77 3.13
1639 1705 0.813184 CTACGCTACGGACCTTTCCA 59.187 55.000 0.00 0.00 43.00 3.53
1640 1706 1.407979 CTACGCTACGGACCTTTCCAT 59.592 52.381 0.00 0.00 43.00 3.41
1641 1707 0.175073 ACGCTACGGACCTTTCCATC 59.825 55.000 0.00 0.00 43.00 3.51
1642 1708 0.460311 CGCTACGGACCTTTCCATCT 59.540 55.000 0.00 0.00 43.00 2.90
1643 1709 1.679680 CGCTACGGACCTTTCCATCTA 59.320 52.381 0.00 0.00 43.00 1.98
1644 1710 2.287668 CGCTACGGACCTTTCCATCTAG 60.288 54.545 0.00 0.00 43.00 2.43
1645 1711 2.694109 GCTACGGACCTTTCCATCTAGT 59.306 50.000 0.00 0.00 43.00 2.57
1646 1712 3.887716 GCTACGGACCTTTCCATCTAGTA 59.112 47.826 0.00 0.00 43.00 1.82
1647 1713 4.023021 GCTACGGACCTTTCCATCTAGTAG 60.023 50.000 0.00 0.00 43.00 2.57
1678 1744 6.594159 AGTTTATCTGAACGGTACTGGATTTG 59.406 38.462 6.65 0.00 34.74 2.32
1718 1784 8.972127 TCTAGCTGAGAGTGATTGTAATTAACT 58.028 33.333 0.00 0.00 0.00 2.24
1784 1850 2.092212 TCTTCTTGGGATGGAGCAATCC 60.092 50.000 4.86 4.86 44.76 3.01
1835 1901 1.615392 AGGTTTGCTCATGCTCCAAAC 59.385 47.619 18.94 18.94 44.50 2.93
1879 1952 5.041287 CCGTATGATACAACACGACTGATT 58.959 41.667 3.24 0.00 36.53 2.57
1934 2007 3.581755 TGGTATCCAAGAGAACGTTTCG 58.418 45.455 0.46 0.00 34.02 3.46
1936 2009 2.457366 ATCCAAGAGAACGTTTCGCT 57.543 45.000 0.46 0.04 41.76 4.93
1942 2015 1.261619 AGAGAACGTTTCGCTTTGCTG 59.738 47.619 0.46 0.00 36.34 4.41
1965 2038 4.219725 GGTGAAAATTGGTTAGGCAGCTAA 59.780 41.667 0.00 0.00 0.00 3.09
1966 2039 5.279256 GGTGAAAATTGGTTAGGCAGCTAAA 60.279 40.000 0.00 0.00 0.00 1.85
1974 2047 3.234386 GTTAGGCAGCTAAAGCAAAACG 58.766 45.455 4.54 0.00 45.16 3.60
2003 2076 9.021807 AGAGTAGTCTGCAAGTGTACTTAATTA 57.978 33.333 0.00 0.00 34.96 1.40
2183 2256 1.595109 CAACTGCTGCAGACACCGA 60.595 57.895 34.28 0.00 35.18 4.69
2319 2392 4.397730 TCATATCCATTGGGTTGTTTGACG 59.602 41.667 2.09 0.00 34.93 4.35
2323 2396 2.458951 CATTGGGTTGTTTGACGTGTG 58.541 47.619 0.00 0.00 0.00 3.82
2480 2562 9.676861 ATGAACTCATGATCATCTTTTCTTACA 57.323 29.630 4.86 0.00 31.30 2.41
2527 2609 6.884187 TGTGCTTTTGTTTTCGTATAGTCTC 58.116 36.000 0.00 0.00 0.00 3.36
2552 2634 2.223665 GCAAAGGCACCATATCAAGCTC 60.224 50.000 0.00 0.00 40.72 4.09
2646 2728 3.430453 CCCTGAAGCCAAACCAATAAGA 58.570 45.455 0.00 0.00 0.00 2.10
2684 2766 6.274672 AGCCTTATGCCCTTACCAGAAATATA 59.725 38.462 0.00 0.00 42.71 0.86
2685 2767 7.036571 AGCCTTATGCCCTTACCAGAAATATAT 60.037 37.037 0.00 0.00 42.71 0.86
2709 2791 6.061441 TCTGAAATGTGCTTTGTCCTTAGAA 58.939 36.000 0.00 0.00 0.00 2.10
2710 2792 6.205464 TCTGAAATGTGCTTTGTCCTTAGAAG 59.795 38.462 0.00 0.00 0.00 2.85
2711 2793 5.827797 TGAAATGTGCTTTGTCCTTAGAAGT 59.172 36.000 0.00 0.00 0.00 3.01
2712 2794 6.995686 TGAAATGTGCTTTGTCCTTAGAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
2713 2795 7.665559 TGAAATGTGCTTTGTCCTTAGAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
3052 3141 4.511454 TGGCTCTATGTTTACATGATTCGC 59.489 41.667 0.00 1.99 37.15 4.70
3054 3143 5.333645 GGCTCTATGTTTACATGATTCGCTG 60.334 44.000 0.00 0.00 37.15 5.18
3058 3147 3.006940 TGTTTACATGATTCGCTGGTCC 58.993 45.455 0.00 0.00 0.00 4.46
3067 3156 0.454600 TTCGCTGGTCCGATCTGTAC 59.545 55.000 0.00 0.00 37.06 2.90
3090 3179 4.016113 AGTTCTTGTTCTGTTTGTTCGC 57.984 40.909 0.00 0.00 0.00 4.70
3107 3196 1.600916 GCGGCAGGGAGTTTTGTCT 60.601 57.895 0.00 0.00 0.00 3.41
3108 3197 1.856265 GCGGCAGGGAGTTTTGTCTG 61.856 60.000 0.00 0.00 0.00 3.51
3109 3198 0.250295 CGGCAGGGAGTTTTGTCTGA 60.250 55.000 0.00 0.00 0.00 3.27
3110 3199 1.528129 GGCAGGGAGTTTTGTCTGAG 58.472 55.000 0.00 0.00 0.00 3.35
3111 3200 1.528129 GCAGGGAGTTTTGTCTGAGG 58.472 55.000 0.00 0.00 0.00 3.86
3112 3201 1.528129 CAGGGAGTTTTGTCTGAGGC 58.472 55.000 0.00 0.00 0.00 4.70
3135 3224 4.763793 CGAGGCCATGAATAATGATTTCCT 59.236 41.667 5.01 0.00 38.72 3.36
3227 3316 5.437289 TTCTCTACAAACACAAGCAATGG 57.563 39.130 0.00 0.00 0.00 3.16
3368 3461 2.962421 GAGGATAGGGTGTGAGAGGAAG 59.038 54.545 0.00 0.00 0.00 3.46
3369 3462 2.587777 AGGATAGGGTGTGAGAGGAAGA 59.412 50.000 0.00 0.00 0.00 2.87
3370 3463 3.208692 AGGATAGGGTGTGAGAGGAAGAT 59.791 47.826 0.00 0.00 0.00 2.40
3371 3464 3.323403 GGATAGGGTGTGAGAGGAAGATG 59.677 52.174 0.00 0.00 0.00 2.90
3372 3465 1.577736 AGGGTGTGAGAGGAAGATGG 58.422 55.000 0.00 0.00 0.00 3.51
3373 3466 1.079490 AGGGTGTGAGAGGAAGATGGA 59.921 52.381 0.00 0.00 0.00 3.41
3374 3467 2.122768 GGGTGTGAGAGGAAGATGGAT 58.877 52.381 0.00 0.00 0.00 3.41
3375 3468 2.158842 GGGTGTGAGAGGAAGATGGATG 60.159 54.545 0.00 0.00 0.00 3.51
3376 3469 2.559440 GTGTGAGAGGAAGATGGATGC 58.441 52.381 0.00 0.00 0.00 3.91
3377 3470 2.093288 GTGTGAGAGGAAGATGGATGCA 60.093 50.000 0.00 0.00 0.00 3.96
3378 3471 2.093288 TGTGAGAGGAAGATGGATGCAC 60.093 50.000 0.00 0.00 0.00 4.57
3379 3472 2.093288 GTGAGAGGAAGATGGATGCACA 60.093 50.000 0.00 0.00 0.00 4.57
3380 3473 2.573009 TGAGAGGAAGATGGATGCACAA 59.427 45.455 0.00 0.00 0.00 3.33
3381 3474 3.204526 GAGAGGAAGATGGATGCACAAG 58.795 50.000 0.00 0.00 0.00 3.16
3382 3475 2.092538 AGAGGAAGATGGATGCACAAGG 60.093 50.000 0.00 0.00 0.00 3.61
3383 3476 0.743097 GGAAGATGGATGCACAAGGC 59.257 55.000 0.00 0.00 45.13 4.35
3397 3490 0.595095 CAAGGCAAGACTTGTCCAGC 59.405 55.000 22.53 8.23 42.18 4.85
3398 3491 0.475906 AAGGCAAGACTTGTCCAGCT 59.524 50.000 22.53 3.13 35.39 4.24
3399 3492 0.250640 AGGCAAGACTTGTCCAGCTG 60.251 55.000 22.53 6.78 35.39 4.24
3400 3493 0.250467 GGCAAGACTTGTCCAGCTGA 60.250 55.000 17.39 0.00 0.00 4.26
3401 3494 1.155042 GCAAGACTTGTCCAGCTGAG 58.845 55.000 17.39 6.98 0.00 3.35
3402 3495 1.805869 CAAGACTTGTCCAGCTGAGG 58.194 55.000 17.39 0.00 0.00 3.86
3403 3496 1.345741 CAAGACTTGTCCAGCTGAGGA 59.654 52.381 17.39 0.86 34.64 3.71
3404 3497 1.949799 AGACTTGTCCAGCTGAGGAT 58.050 50.000 17.39 0.00 40.42 3.24
3405 3498 3.107402 AGACTTGTCCAGCTGAGGATA 57.893 47.619 17.39 0.00 40.42 2.59
3406 3499 3.030291 AGACTTGTCCAGCTGAGGATAG 58.970 50.000 17.39 9.14 40.42 2.08
3407 3500 2.102252 GACTTGTCCAGCTGAGGATAGG 59.898 54.545 17.39 6.35 40.42 2.57
3408 3501 1.415659 CTTGTCCAGCTGAGGATAGGG 59.584 57.143 17.39 0.00 40.42 3.53
3409 3502 0.339859 TGTCCAGCTGAGGATAGGGT 59.660 55.000 17.39 0.00 40.42 4.34
3410 3503 0.755686 GTCCAGCTGAGGATAGGGTG 59.244 60.000 17.39 0.00 40.42 4.61
3411 3504 0.339859 TCCAGCTGAGGATAGGGTGT 59.660 55.000 17.39 0.00 31.23 4.16
3412 3505 0.467384 CCAGCTGAGGATAGGGTGTG 59.533 60.000 17.39 0.00 0.00 3.82
3413 3506 1.489481 CAGCTGAGGATAGGGTGTGA 58.511 55.000 8.42 0.00 0.00 3.58
3414 3507 1.411977 CAGCTGAGGATAGGGTGTGAG 59.588 57.143 8.42 0.00 0.00 3.51
3415 3508 1.289231 AGCTGAGGATAGGGTGTGAGA 59.711 52.381 0.00 0.00 0.00 3.27
3416 3509 1.686052 GCTGAGGATAGGGTGTGAGAG 59.314 57.143 0.00 0.00 0.00 3.20
3417 3510 2.315176 CTGAGGATAGGGTGTGAGAGG 58.685 57.143 0.00 0.00 0.00 3.69
3418 3511 1.930204 TGAGGATAGGGTGTGAGAGGA 59.070 52.381 0.00 0.00 0.00 3.71
3419 3512 2.314852 TGAGGATAGGGTGTGAGAGGAA 59.685 50.000 0.00 0.00 0.00 3.36
3632 3726 2.880443 TGCTTGCCTTTCTCCTTCAAT 58.120 42.857 0.00 0.00 0.00 2.57
3637 3731 4.853924 TGCCTTTCTCCTTCAATTTGTC 57.146 40.909 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.474831 GCAGAACACCCCTAAATTAATAACATT 58.525 33.333 0.00 0.00 0.00 2.71
9 10 7.617723 TGCAGAACACCCCTAAATTAATAACAT 59.382 33.333 0.00 0.00 0.00 2.71
10 11 6.948886 TGCAGAACACCCCTAAATTAATAACA 59.051 34.615 0.00 0.00 0.00 2.41
11 12 7.399245 TGCAGAACACCCCTAAATTAATAAC 57.601 36.000 0.00 0.00 0.00 1.89
12 13 8.423906 TTTGCAGAACACCCCTAAATTAATAA 57.576 30.769 0.00 0.00 0.00 1.40
13 14 8.423906 TTTTGCAGAACACCCCTAAATTAATA 57.576 30.769 0.00 0.00 0.00 0.98
14 15 6.926630 TTTGCAGAACACCCCTAAATTAAT 57.073 33.333 0.00 0.00 0.00 1.40
15 16 6.732896 TTTTGCAGAACACCCCTAAATTAA 57.267 33.333 0.00 0.00 0.00 1.40
16 17 6.732896 TTTTTGCAGAACACCCCTAAATTA 57.267 33.333 0.00 0.00 0.00 1.40
17 18 5.622346 TTTTTGCAGAACACCCCTAAATT 57.378 34.783 0.00 0.00 0.00 1.82
46 47 3.363844 GACGAGGTGGAGCTGGAGC 62.364 68.421 0.00 0.00 42.49 4.70
47 48 1.979155 TGACGAGGTGGAGCTGGAG 60.979 63.158 0.00 0.00 0.00 3.86
48 49 2.117423 TGACGAGGTGGAGCTGGA 59.883 61.111 0.00 0.00 0.00 3.86
49 50 2.262915 GTGACGAGGTGGAGCTGG 59.737 66.667 0.00 0.00 0.00 4.85
50 51 1.080230 CAGTGACGAGGTGGAGCTG 60.080 63.158 0.00 0.00 0.00 4.24
51 52 1.228583 TCAGTGACGAGGTGGAGCT 60.229 57.895 0.00 0.00 0.00 4.09
52 53 1.080434 GTCAGTGACGAGGTGGAGC 60.080 63.158 7.68 0.00 0.00 4.70
62 63 4.057428 AGGCTCGCCGTCAGTGAC 62.057 66.667 13.56 13.56 41.95 3.67
63 64 4.056125 CAGGCTCGCCGTCAGTGA 62.056 66.667 1.69 0.00 41.95 3.41
73 74 4.923942 ATGATGGCGCCAGGCTCG 62.924 66.667 35.36 0.00 44.18 5.03
74 75 3.285215 CATGATGGCGCCAGGCTC 61.285 66.667 35.36 26.80 44.18 4.70
75 76 4.119363 ACATGATGGCGCCAGGCT 62.119 61.111 35.36 19.23 44.18 4.58
76 77 3.589881 GACATGATGGCGCCAGGC 61.590 66.667 35.36 27.68 44.11 4.85
77 78 2.124612 TGACATGATGGCGCCAGG 60.125 61.111 35.36 24.36 0.00 4.45
78 79 2.816360 CGTGACATGATGGCGCCAG 61.816 63.158 35.36 23.10 30.55 4.85
79 80 2.819154 CGTGACATGATGGCGCCA 60.819 61.111 34.80 34.80 30.55 5.69
80 81 4.241999 GCGTGACATGATGGCGCC 62.242 66.667 22.73 22.73 41.93 6.53
81 82 4.241999 GGCGTGACATGATGGCGC 62.242 66.667 17.97 17.97 46.24 6.53
82 83 2.819154 TGGCGTGACATGATGGCG 60.819 61.111 0.00 0.00 0.00 5.69
83 84 1.985447 CTGTGGCGTGACATGATGGC 61.985 60.000 0.00 0.00 0.00 4.40
84 85 0.391528 TCTGTGGCGTGACATGATGG 60.392 55.000 0.00 0.00 0.00 3.51
85 86 1.395954 CTTCTGTGGCGTGACATGATG 59.604 52.381 0.00 0.00 0.00 3.07
86 87 1.730501 CTTCTGTGGCGTGACATGAT 58.269 50.000 0.00 0.00 0.00 2.45
87 88 0.950555 GCTTCTGTGGCGTGACATGA 60.951 55.000 0.00 0.00 0.00 3.07
88 89 1.499056 GCTTCTGTGGCGTGACATG 59.501 57.895 0.00 0.00 0.00 3.21
89 90 2.029288 CGCTTCTGTGGCGTGACAT 61.029 57.895 0.00 0.00 46.37 3.06
90 91 2.661537 CGCTTCTGTGGCGTGACA 60.662 61.111 0.00 0.00 46.37 3.58
97 98 0.673333 TGTGTATGCCGCTTCTGTGG 60.673 55.000 0.00 0.00 46.17 4.17
98 99 0.723414 CTGTGTATGCCGCTTCTGTG 59.277 55.000 0.00 0.00 0.00 3.66
99 100 1.021390 GCTGTGTATGCCGCTTCTGT 61.021 55.000 0.00 0.00 0.00 3.41
100 101 0.742281 AGCTGTGTATGCCGCTTCTG 60.742 55.000 0.00 0.00 0.00 3.02
101 102 0.824109 TAGCTGTGTATGCCGCTTCT 59.176 50.000 0.00 0.00 34.14 2.85
102 103 0.931005 GTAGCTGTGTATGCCGCTTC 59.069 55.000 0.00 0.00 34.14 3.86
103 104 0.249120 TGTAGCTGTGTATGCCGCTT 59.751 50.000 0.00 0.00 34.14 4.68
104 105 0.465705 ATGTAGCTGTGTATGCCGCT 59.534 50.000 0.00 0.00 36.56 5.52
105 106 1.792949 GTATGTAGCTGTGTATGCCGC 59.207 52.381 0.00 0.00 0.00 6.53
106 107 2.051423 CGTATGTAGCTGTGTATGCCG 58.949 52.381 0.00 0.00 0.00 5.69
107 108 3.004419 TCTCGTATGTAGCTGTGTATGCC 59.996 47.826 0.00 0.00 0.00 4.40
108 109 4.224715 TCTCGTATGTAGCTGTGTATGC 57.775 45.455 0.00 0.00 0.00 3.14
109 110 6.438763 TCATTCTCGTATGTAGCTGTGTATG 58.561 40.000 0.00 0.00 0.00 2.39
110 111 6.635030 TCATTCTCGTATGTAGCTGTGTAT 57.365 37.500 0.00 0.00 0.00 2.29
111 112 6.445357 TTCATTCTCGTATGTAGCTGTGTA 57.555 37.500 0.00 0.00 0.00 2.90
112 113 4.983671 TCATTCTCGTATGTAGCTGTGT 57.016 40.909 0.00 0.00 0.00 3.72
113 114 5.275927 CGTTTCATTCTCGTATGTAGCTGTG 60.276 44.000 0.00 0.00 0.00 3.66
114 115 4.798907 CGTTTCATTCTCGTATGTAGCTGT 59.201 41.667 0.00 0.00 0.00 4.40
115 116 4.798907 ACGTTTCATTCTCGTATGTAGCTG 59.201 41.667 0.00 0.00 36.05 4.24
116 117 4.995124 ACGTTTCATTCTCGTATGTAGCT 58.005 39.130 0.00 0.00 36.05 3.32
117 118 6.988109 ATACGTTTCATTCTCGTATGTAGC 57.012 37.500 0.00 0.00 44.98 3.58
118 119 8.576281 GCATATACGTTTCATTCTCGTATGTAG 58.424 37.037 16.12 8.99 45.77 2.74
119 120 8.077386 TGCATATACGTTTCATTCTCGTATGTA 58.923 33.333 16.12 3.92 45.77 2.29
120 121 6.921307 TGCATATACGTTTCATTCTCGTATGT 59.079 34.615 16.12 9.20 45.77 2.29
121 122 7.220604 GTGCATATACGTTTCATTCTCGTATG 58.779 38.462 16.12 7.28 45.77 2.39
123 124 5.688621 GGTGCATATACGTTTCATTCTCGTA 59.311 40.000 0.00 0.00 42.60 3.43
124 125 4.506654 GGTGCATATACGTTTCATTCTCGT 59.493 41.667 0.00 0.00 40.78 4.18
125 126 4.745125 AGGTGCATATACGTTTCATTCTCG 59.255 41.667 0.00 0.00 0.00 4.04
126 127 6.257849 TCAAGGTGCATATACGTTTCATTCTC 59.742 38.462 0.00 0.00 0.00 2.87
127 128 6.112734 TCAAGGTGCATATACGTTTCATTCT 58.887 36.000 0.00 0.00 0.00 2.40
128 129 6.257849 TCTCAAGGTGCATATACGTTTCATTC 59.742 38.462 0.00 0.00 0.00 2.67
129 130 6.037172 GTCTCAAGGTGCATATACGTTTCATT 59.963 38.462 0.00 0.00 0.00 2.57
130 131 5.523916 GTCTCAAGGTGCATATACGTTTCAT 59.476 40.000 0.00 0.00 0.00 2.57
131 132 4.868171 GTCTCAAGGTGCATATACGTTTCA 59.132 41.667 0.00 0.00 0.00 2.69
132 133 4.868171 TGTCTCAAGGTGCATATACGTTTC 59.132 41.667 0.00 0.00 0.00 2.78
133 134 4.827692 TGTCTCAAGGTGCATATACGTTT 58.172 39.130 0.00 0.00 0.00 3.60
134 135 4.465632 TGTCTCAAGGTGCATATACGTT 57.534 40.909 0.00 0.00 0.00 3.99
135 136 4.081642 ACTTGTCTCAAGGTGCATATACGT 60.082 41.667 12.95 0.00 0.00 3.57
136 137 4.433615 ACTTGTCTCAAGGTGCATATACG 58.566 43.478 12.95 0.00 0.00 3.06
137 138 6.036517 CAGAACTTGTCTCAAGGTGCATATAC 59.963 42.308 12.95 0.00 32.70 1.47
138 139 6.070824 TCAGAACTTGTCTCAAGGTGCATATA 60.071 38.462 12.95 0.00 32.70 0.86
139 140 4.940046 CAGAACTTGTCTCAAGGTGCATAT 59.060 41.667 12.95 0.00 32.70 1.78
140 141 4.040339 TCAGAACTTGTCTCAAGGTGCATA 59.960 41.667 12.95 0.00 32.70 3.14
141 142 3.144506 CAGAACTTGTCTCAAGGTGCAT 58.855 45.455 12.95 0.00 32.70 3.96
142 143 2.170397 TCAGAACTTGTCTCAAGGTGCA 59.830 45.455 12.95 0.00 32.70 4.57
143 144 2.545946 GTCAGAACTTGTCTCAAGGTGC 59.454 50.000 12.95 2.83 32.70 5.01
144 145 3.797039 TGTCAGAACTTGTCTCAAGGTG 58.203 45.455 12.95 7.94 32.70 4.00
145 146 4.101585 TGATGTCAGAACTTGTCTCAAGGT 59.898 41.667 12.95 7.06 32.70 3.50
146 147 4.635223 TGATGTCAGAACTTGTCTCAAGG 58.365 43.478 12.95 0.00 32.70 3.61
147 148 5.295950 ACTGATGTCAGAACTTGTCTCAAG 58.704 41.667 16.41 7.78 46.59 3.02
148 149 5.282055 ACTGATGTCAGAACTTGTCTCAA 57.718 39.130 16.41 0.00 46.59 3.02
149 150 4.944619 ACTGATGTCAGAACTTGTCTCA 57.055 40.909 16.41 0.00 46.59 3.27
150 151 6.293135 GGAAAACTGATGTCAGAACTTGTCTC 60.293 42.308 16.41 2.85 46.59 3.36
151 152 5.529060 GGAAAACTGATGTCAGAACTTGTCT 59.471 40.000 16.41 0.00 46.59 3.41
152 153 5.559035 CGGAAAACTGATGTCAGAACTTGTC 60.559 44.000 16.41 5.49 46.59 3.18
153 154 4.273480 CGGAAAACTGATGTCAGAACTTGT 59.727 41.667 16.41 0.00 46.59 3.16
154 155 4.273480 ACGGAAAACTGATGTCAGAACTTG 59.727 41.667 16.41 4.69 46.59 3.16
155 156 4.451900 ACGGAAAACTGATGTCAGAACTT 58.548 39.130 16.41 6.41 46.59 2.66
156 157 4.073293 ACGGAAAACTGATGTCAGAACT 57.927 40.909 16.41 0.40 46.59 3.01
157 158 6.481954 AATACGGAAAACTGATGTCAGAAC 57.518 37.500 16.41 4.96 46.59 3.01
158 159 7.504924 AAAATACGGAAAACTGATGTCAGAA 57.495 32.000 16.41 0.00 46.59 3.02
159 160 7.227711 TGAAAAATACGGAAAACTGATGTCAGA 59.772 33.333 16.41 0.00 46.59 3.27
161 162 7.265647 TGAAAAATACGGAAAACTGATGTCA 57.734 32.000 0.00 0.00 0.00 3.58
162 163 7.860872 AGTTGAAAAATACGGAAAACTGATGTC 59.139 33.333 0.00 0.00 0.00 3.06
163 164 7.712797 AGTTGAAAAATACGGAAAACTGATGT 58.287 30.769 0.00 0.00 0.00 3.06
164 165 8.479280 CAAGTTGAAAAATACGGAAAACTGATG 58.521 33.333 0.00 0.00 0.00 3.07
165 166 8.194769 ACAAGTTGAAAAATACGGAAAACTGAT 58.805 29.630 10.54 0.00 0.00 2.90
166 167 7.486551 CACAAGTTGAAAAATACGGAAAACTGA 59.513 33.333 10.54 0.00 0.00 3.41
167 168 7.486551 TCACAAGTTGAAAAATACGGAAAACTG 59.513 33.333 10.54 0.00 0.00 3.16
168 169 7.486870 GTCACAAGTTGAAAAATACGGAAAACT 59.513 33.333 10.54 0.00 35.39 2.66
169 170 7.273815 TGTCACAAGTTGAAAAATACGGAAAAC 59.726 33.333 10.54 0.00 35.39 2.43
170 171 7.273815 GTGTCACAAGTTGAAAAATACGGAAAA 59.726 33.333 10.54 0.00 35.39 2.29
171 172 6.748198 GTGTCACAAGTTGAAAAATACGGAAA 59.252 34.615 10.54 0.00 35.39 3.13
172 173 6.259638 GTGTCACAAGTTGAAAAATACGGAA 58.740 36.000 10.54 0.00 35.39 4.30
173 174 5.220892 GGTGTCACAAGTTGAAAAATACGGA 60.221 40.000 10.54 0.00 35.39 4.69
174 175 4.973663 GGTGTCACAAGTTGAAAAATACGG 59.026 41.667 10.54 0.00 35.39 4.02
175 176 5.574082 TGGTGTCACAAGTTGAAAAATACG 58.426 37.500 10.54 0.00 35.39 3.06
176 177 7.544217 AGTTTGGTGTCACAAGTTGAAAAATAC 59.456 33.333 10.54 1.10 35.39 1.89
177 178 7.543868 CAGTTTGGTGTCACAAGTTGAAAAATA 59.456 33.333 10.54 0.00 35.39 1.40
178 179 6.368516 CAGTTTGGTGTCACAAGTTGAAAAAT 59.631 34.615 10.54 0.00 35.39 1.82
179 180 5.694006 CAGTTTGGTGTCACAAGTTGAAAAA 59.306 36.000 10.54 0.00 35.39 1.94
180 181 5.226396 CAGTTTGGTGTCACAAGTTGAAAA 58.774 37.500 10.54 0.00 35.39 2.29
181 182 4.804108 CAGTTTGGTGTCACAAGTTGAAA 58.196 39.130 10.54 0.00 35.39 2.69
182 183 3.366883 GCAGTTTGGTGTCACAAGTTGAA 60.367 43.478 10.54 0.00 35.39 2.69
183 184 2.163412 GCAGTTTGGTGTCACAAGTTGA 59.837 45.455 10.54 0.00 0.00 3.18
184 185 2.094803 TGCAGTTTGGTGTCACAAGTTG 60.095 45.455 5.12 0.00 0.00 3.16
185 186 2.094752 GTGCAGTTTGGTGTCACAAGTT 60.095 45.455 5.12 0.00 0.00 2.66
186 187 1.472480 GTGCAGTTTGGTGTCACAAGT 59.528 47.619 5.12 0.00 0.00 3.16
187 188 1.472082 TGTGCAGTTTGGTGTCACAAG 59.528 47.619 5.12 0.00 34.03 3.16
188 189 1.539157 TGTGCAGTTTGGTGTCACAA 58.461 45.000 5.12 0.00 34.03 3.33
189 190 1.404748 CATGTGCAGTTTGGTGTCACA 59.595 47.619 5.12 0.00 38.19 3.58
190 191 1.405105 ACATGTGCAGTTTGGTGTCAC 59.595 47.619 0.00 0.00 0.00 3.67
191 192 1.761449 ACATGTGCAGTTTGGTGTCA 58.239 45.000 0.00 0.00 0.00 3.58
192 193 2.159254 ACAACATGTGCAGTTTGGTGTC 60.159 45.455 0.00 0.00 36.61 3.67
193 194 1.824230 ACAACATGTGCAGTTTGGTGT 59.176 42.857 0.00 8.03 36.50 4.16
194 195 2.195096 CACAACATGTGCAGTTTGGTG 58.805 47.619 0.00 6.89 41.89 4.17
195 196 2.582728 CACAACATGTGCAGTTTGGT 57.417 45.000 0.00 0.00 41.89 3.67
205 206 4.261572 GGTACATGAAGTTGCACAACATGT 60.262 41.667 22.20 22.20 43.52 3.21
206 207 4.229096 GGTACATGAAGTTGCACAACATG 58.771 43.478 15.40 12.13 43.47 3.21
207 208 3.888323 TGGTACATGAAGTTGCACAACAT 59.112 39.130 15.40 3.56 43.47 2.71
208 209 3.066064 GTGGTACATGAAGTTGCACAACA 59.934 43.478 15.40 0.00 44.52 3.33
209 210 3.550030 GGTGGTACATGAAGTTGCACAAC 60.550 47.826 0.00 5.36 44.52 3.32
210 211 2.621055 GGTGGTACATGAAGTTGCACAA 59.379 45.455 0.00 0.00 44.52 3.33
211 212 2.226330 GGTGGTACATGAAGTTGCACA 58.774 47.619 0.00 0.00 44.52 4.57
212 213 1.196808 CGGTGGTACATGAAGTTGCAC 59.803 52.381 0.00 0.00 44.52 4.57
213 214 1.518325 CGGTGGTACATGAAGTTGCA 58.482 50.000 0.00 0.00 44.52 4.08
214 215 0.802494 CCGGTGGTACATGAAGTTGC 59.198 55.000 0.00 0.00 44.52 4.17
215 216 0.802494 GCCGGTGGTACATGAAGTTG 59.198 55.000 1.90 0.00 44.52 3.16
216 217 0.672401 CGCCGGTGGTACATGAAGTT 60.672 55.000 7.26 0.00 44.52 2.66
217 218 1.079405 CGCCGGTGGTACATGAAGT 60.079 57.895 7.26 0.00 44.52 3.01
218 219 2.461110 GCGCCGGTGGTACATGAAG 61.461 63.158 18.41 0.00 44.52 3.02
219 220 2.435234 GCGCCGGTGGTACATGAA 60.435 61.111 18.41 0.00 44.52 2.57
220 221 2.529454 AATGCGCCGGTGGTACATGA 62.529 55.000 18.41 0.00 44.52 3.07
221 222 1.653094 AAATGCGCCGGTGGTACATG 61.653 55.000 18.41 0.00 44.52 3.21
222 223 0.107606 TAAATGCGCCGGTGGTACAT 60.108 50.000 18.41 8.98 44.52 2.29
223 224 1.020333 GTAAATGCGCCGGTGGTACA 61.020 55.000 18.41 6.71 0.00 2.90
224 225 1.708193 GGTAAATGCGCCGGTGGTAC 61.708 60.000 18.41 0.00 0.00 3.34
225 226 1.449956 GGTAAATGCGCCGGTGGTA 60.450 57.895 18.41 2.09 0.00 3.25
226 227 2.748647 GGTAAATGCGCCGGTGGT 60.749 61.111 18.41 0.00 0.00 4.16
227 228 2.437716 AGGTAAATGCGCCGGTGG 60.438 61.111 18.41 3.39 0.00 4.61
228 229 2.808958 CGAGGTAAATGCGCCGGTG 61.809 63.158 11.67 11.67 0.00 4.94
229 230 2.510691 CGAGGTAAATGCGCCGGT 60.511 61.111 4.18 0.00 0.00 5.28
230 231 2.632136 TACCGAGGTAAATGCGCCGG 62.632 60.000 14.53 14.53 42.30 6.13
231 232 1.227031 TACCGAGGTAAATGCGCCG 60.227 57.895 4.18 0.00 0.00 6.46
232 233 0.460635 TGTACCGAGGTAAATGCGCC 60.461 55.000 4.18 0.00 31.86 6.53
233 234 1.361793 TTGTACCGAGGTAAATGCGC 58.638 50.000 0.00 0.00 31.86 6.09
234 235 4.365723 AGTATTGTACCGAGGTAAATGCG 58.634 43.478 3.21 0.00 31.86 4.73
235 236 6.510536 ACTAGTATTGTACCGAGGTAAATGC 58.489 40.000 3.21 9.40 31.86 3.56
236 237 7.938715 AGACTAGTATTGTACCGAGGTAAATG 58.061 38.462 3.21 0.00 31.86 2.32
237 238 8.530804 AAGACTAGTATTGTACCGAGGTAAAT 57.469 34.615 1.03 8.64 31.86 1.40
238 239 7.944729 AAGACTAGTATTGTACCGAGGTAAA 57.055 36.000 1.03 0.00 31.86 2.01
241 242 9.061435 GTTATAAGACTAGTATTGTACCGAGGT 57.939 37.037 12.98 0.00 0.00 3.85
242 243 9.282569 AGTTATAAGACTAGTATTGTACCGAGG 57.717 37.037 12.98 0.00 0.00 4.63
309 310 5.874093 TCCTACTACTAGTATTTCTCCCCG 58.126 45.833 2.33 0.00 29.08 5.73
310 311 6.851318 ACTCCTACTACTAGTATTTCTCCCC 58.149 44.000 2.33 0.00 29.08 4.81
320 321 3.134442 CCCTCGTGACTCCTACTACTAGT 59.866 52.174 0.00 0.00 0.00 2.57
321 322 3.387374 TCCCTCGTGACTCCTACTACTAG 59.613 52.174 0.00 0.00 0.00 2.57
322 323 3.378512 TCCCTCGTGACTCCTACTACTA 58.621 50.000 0.00 0.00 0.00 1.82
323 324 2.194859 TCCCTCGTGACTCCTACTACT 58.805 52.381 0.00 0.00 0.00 2.57
516 531 4.943705 TCTTTCTCTCTCTCTCTCTCTTGC 59.056 45.833 0.00 0.00 0.00 4.01
521 536 5.160607 TCGTTCTTTCTCTCTCTCTCTCT 57.839 43.478 0.00 0.00 0.00 3.10
522 537 5.873179 TTCGTTCTTTCTCTCTCTCTCTC 57.127 43.478 0.00 0.00 0.00 3.20
523 538 5.183140 CCTTTCGTTCTTTCTCTCTCTCTCT 59.817 44.000 0.00 0.00 0.00 3.10
524 539 5.399013 CCTTTCGTTCTTTCTCTCTCTCTC 58.601 45.833 0.00 0.00 0.00 3.20
547 562 0.170339 CCGGCACCTTTCGAAATTCC 59.830 55.000 11.70 9.02 0.00 3.01
592 607 0.528470 GTTCGTGTGGAGGAGGAGAG 59.472 60.000 0.00 0.00 0.00 3.20
593 608 0.898789 GGTTCGTGTGGAGGAGGAGA 60.899 60.000 0.00 0.00 0.00 3.71
594 609 1.185618 TGGTTCGTGTGGAGGAGGAG 61.186 60.000 0.00 0.00 0.00 3.69
595 610 1.152419 TGGTTCGTGTGGAGGAGGA 60.152 57.895 0.00 0.00 0.00 3.71
596 611 1.004918 GTGGTTCGTGTGGAGGAGG 60.005 63.158 0.00 0.00 0.00 4.30
597 612 1.372997 CGTGGTTCGTGTGGAGGAG 60.373 63.158 0.00 0.00 34.52 3.69
598 613 2.732016 CGTGGTTCGTGTGGAGGA 59.268 61.111 0.00 0.00 34.52 3.71
627 648 3.279875 GGACCGCGATGATTGCCC 61.280 66.667 8.23 0.00 0.00 5.36
628 649 3.279875 GGGACCGCGATGATTGCC 61.280 66.667 8.23 0.00 0.00 4.52
757 786 0.034337 AGGACGCGGTTTCAGCTTTA 59.966 50.000 12.47 0.00 0.00 1.85
760 790 2.048127 GAGGACGCGGTTTCAGCT 60.048 61.111 12.47 0.00 0.00 4.24
761 791 3.119096 GGAGGACGCGGTTTCAGC 61.119 66.667 12.47 0.00 0.00 4.26
763 793 1.186917 TAAGGGAGGACGCGGTTTCA 61.187 55.000 12.47 0.00 0.00 2.69
967 1003 1.379176 CTCAGCTCCACCTCCGAGA 60.379 63.158 0.00 0.00 0.00 4.04
968 1004 2.422231 CCTCAGCTCCACCTCCGAG 61.422 68.421 0.00 0.00 0.00 4.63
983 1019 1.604604 CATCTCCGGTCTCTCTCCTC 58.395 60.000 0.00 0.00 0.00 3.71
1130 1169 1.154301 CAAATCCCGAAACACGCCG 60.154 57.895 0.00 0.00 41.07 6.46
1177 1234 2.114411 GCAACCTCCCCCAACGAA 59.886 61.111 0.00 0.00 0.00 3.85
1178 1235 4.323477 CGCAACCTCCCCCAACGA 62.323 66.667 0.00 0.00 0.00 3.85
1179 1236 4.636435 ACGCAACCTCCCCCAACG 62.636 66.667 0.00 0.00 0.00 4.10
1180 1237 2.203437 AACGCAACCTCCCCCAAC 60.203 61.111 0.00 0.00 0.00 3.77
1215 1276 2.778899 CCCCCAGAGGACAGAAACT 58.221 57.895 0.00 0.00 38.24 2.66
1289 1351 1.011968 CCAGACCAAATCGACGCGAA 61.012 55.000 15.93 0.00 39.99 4.70
1300 1362 1.133199 AGCCACCAAATTCCAGACCAA 60.133 47.619 0.00 0.00 0.00 3.67
1444 1506 2.249309 TGGTCTCCTTCTTCCTACCC 57.751 55.000 0.00 0.00 0.00 3.69
1447 1509 3.647636 CTCCATGGTCTCCTTCTTCCTA 58.352 50.000 12.58 0.00 0.00 2.94
1558 1620 3.804193 GCACTAGCGCACAAGGCC 61.804 66.667 11.47 0.00 40.31 5.19
1589 1651 9.929180 GCCATCTGACTTTTATCTGTATGTATA 57.071 33.333 0.00 0.00 0.00 1.47
1590 1652 7.600375 CGCCATCTGACTTTTATCTGTATGTAT 59.400 37.037 0.00 0.00 0.00 2.29
1591 1653 6.923508 CGCCATCTGACTTTTATCTGTATGTA 59.076 38.462 0.00 0.00 0.00 2.29
1592 1654 5.755375 CGCCATCTGACTTTTATCTGTATGT 59.245 40.000 0.00 0.00 0.00 2.29
1630 1696 8.240267 ACTGAATACTACTAGATGGAAAGGTC 57.760 38.462 0.00 0.00 0.00 3.85
1631 1697 8.611051 AACTGAATACTACTAGATGGAAAGGT 57.389 34.615 0.00 0.00 0.00 3.50
1737 1803 0.984230 CTCAACCCAGGGAGCAGTTA 59.016 55.000 14.54 0.00 0.00 2.24
1835 1901 4.047142 GGTTTAAGGTCGATTAGCTACGG 58.953 47.826 0.00 0.00 33.87 4.02
1879 1952 5.122519 TCATGTACAAACAAACTCAGCTCA 58.877 37.500 0.00 0.00 39.58 4.26
1917 1990 2.457366 AGCGAAACGTTCTCTTGGAT 57.543 45.000 0.00 0.00 0.00 3.41
1921 1994 1.940613 AGCAAAGCGAAACGTTCTCTT 59.059 42.857 0.00 2.51 36.35 2.85
1934 2007 2.837498 ACCAATTTTCACCAGCAAAGC 58.163 42.857 0.00 0.00 0.00 3.51
1936 2009 4.742138 GCCTAACCAATTTTCACCAGCAAA 60.742 41.667 0.00 0.00 0.00 3.68
1942 2015 2.562738 AGCTGCCTAACCAATTTTCACC 59.437 45.455 0.00 0.00 0.00 4.02
1965 2038 4.058817 CAGACTACTCTTCCGTTTTGCTT 58.941 43.478 0.00 0.00 0.00 3.91
1966 2039 3.654414 CAGACTACTCTTCCGTTTTGCT 58.346 45.455 0.00 0.00 0.00 3.91
1974 2047 3.669251 ACACTTGCAGACTACTCTTCC 57.331 47.619 0.00 0.00 0.00 3.46
2003 2076 6.767456 TCCCTGAAATTTATTTGCACACAAT 58.233 32.000 0.00 0.00 35.21 2.71
2183 2256 4.003788 CGGCCGTCTGGACCTTGT 62.004 66.667 19.50 0.00 42.08 3.16
2228 2301 1.450312 GGAGCATCAACCGGACCAG 60.450 63.158 9.46 0.00 36.25 4.00
2231 2304 1.941325 CTTAGGAGCATCAACCGGAC 58.059 55.000 9.46 0.00 36.25 4.79
2251 2324 1.424493 GAAGCATTCGGACGAGCAGG 61.424 60.000 8.34 0.00 34.17 4.85
2291 2364 6.872585 AACAACCCAATGGATATGAACAAT 57.127 33.333 0.00 0.00 34.81 2.71
2296 2369 4.397730 CGTCAAACAACCCAATGGATATGA 59.602 41.667 0.00 0.00 34.81 2.15
2308 2381 4.278609 CGCACACGTCAAACAACC 57.721 55.556 0.00 0.00 33.53 3.77
2319 2392 4.032900 ACAATAAGAATCATCGACGCACAC 59.967 41.667 0.00 0.00 0.00 3.82
2323 2396 3.246226 AGCACAATAAGAATCATCGACGC 59.754 43.478 0.00 0.00 0.00 5.19
2480 2562 7.926555 CACAAGTTAGATCCATATACTTCGGTT 59.073 37.037 0.00 0.00 0.00 4.44
2552 2634 1.271543 TGGTGTTGCATCAGAAGGAGG 60.272 52.381 0.00 0.00 0.00 4.30
2684 2766 6.240894 TCTAAGGACAAAGCACATTTCAGAT 58.759 36.000 0.00 0.00 0.00 2.90
2685 2767 5.620206 TCTAAGGACAAAGCACATTTCAGA 58.380 37.500 0.00 0.00 0.00 3.27
3052 3141 1.380524 ACTCGTACAGATCGGACCAG 58.619 55.000 0.00 0.00 0.00 4.00
3054 3143 2.015587 AGAACTCGTACAGATCGGACC 58.984 52.381 0.00 0.00 0.00 4.46
3058 3147 4.555360 CAGAACAAGAACTCGTACAGATCG 59.445 45.833 0.00 0.00 0.00 3.69
3067 3156 4.263800 CGAACAAACAGAACAAGAACTCG 58.736 43.478 0.00 0.00 0.00 4.18
3090 3179 0.250295 TCAGACAAAACTCCCTGCCG 60.250 55.000 0.00 0.00 0.00 5.69
3111 3200 4.479619 GAAATCATTATTCATGGCCTCGC 58.520 43.478 3.32 0.00 33.07 5.03
3112 3201 4.763793 AGGAAATCATTATTCATGGCCTCG 59.236 41.667 3.32 0.00 33.07 4.63
3150 3239 8.452534 TGCGAAATTTGTTTCCGTAGTTATATT 58.547 29.630 0.00 0.00 0.00 1.28
3151 3240 7.976826 TGCGAAATTTGTTTCCGTAGTTATAT 58.023 30.769 0.00 0.00 0.00 0.86
3152 3241 7.361889 TGCGAAATTTGTTTCCGTAGTTATA 57.638 32.000 0.00 0.00 0.00 0.98
3227 3316 9.556030 GCAACTTTACAATAGACCAAAATAGAC 57.444 33.333 0.00 0.00 0.00 2.59
3378 3471 0.595095 GCTGGACAAGTCTTGCCTTG 59.405 55.000 20.01 15.34 45.83 3.61
3379 3472 0.475906 AGCTGGACAAGTCTTGCCTT 59.524 50.000 20.01 1.68 0.00 4.35
3380 3473 0.250640 CAGCTGGACAAGTCTTGCCT 60.251 55.000 20.01 2.31 0.00 4.75
3381 3474 0.250467 TCAGCTGGACAAGTCTTGCC 60.250 55.000 15.13 14.23 0.00 4.52
3382 3475 1.155042 CTCAGCTGGACAAGTCTTGC 58.845 55.000 15.13 5.59 0.00 4.01
3383 3476 1.345741 TCCTCAGCTGGACAAGTCTTG 59.654 52.381 15.13 11.17 0.00 3.02
3384 3477 1.722034 TCCTCAGCTGGACAAGTCTT 58.278 50.000 15.13 0.00 0.00 3.01
3385 3478 1.949799 ATCCTCAGCTGGACAAGTCT 58.050 50.000 15.13 0.00 39.17 3.24
3386 3479 2.102252 CCTATCCTCAGCTGGACAAGTC 59.898 54.545 15.13 0.00 39.17 3.01
3387 3480 2.114616 CCTATCCTCAGCTGGACAAGT 58.885 52.381 15.13 0.00 39.17 3.16
3388 3481 1.415659 CCCTATCCTCAGCTGGACAAG 59.584 57.143 15.13 3.26 39.17 3.16
3389 3482 1.273838 ACCCTATCCTCAGCTGGACAA 60.274 52.381 15.13 0.00 39.17 3.18
3390 3483 0.339859 ACCCTATCCTCAGCTGGACA 59.660 55.000 15.13 0.00 39.17 4.02
3391 3484 0.755686 CACCCTATCCTCAGCTGGAC 59.244 60.000 15.13 0.00 39.17 4.02
3392 3485 0.339859 ACACCCTATCCTCAGCTGGA 59.660 55.000 15.13 4.23 40.82 3.86
3393 3486 0.467384 CACACCCTATCCTCAGCTGG 59.533 60.000 15.13 4.45 0.00 4.85
3394 3487 1.411977 CTCACACCCTATCCTCAGCTG 59.588 57.143 7.63 7.63 0.00 4.24
3395 3488 1.289231 TCTCACACCCTATCCTCAGCT 59.711 52.381 0.00 0.00 0.00 4.24
3396 3489 1.686052 CTCTCACACCCTATCCTCAGC 59.314 57.143 0.00 0.00 0.00 4.26
3397 3490 2.091610 TCCTCTCACACCCTATCCTCAG 60.092 54.545 0.00 0.00 0.00 3.35
3398 3491 1.930204 TCCTCTCACACCCTATCCTCA 59.070 52.381 0.00 0.00 0.00 3.86
3399 3492 2.757894 TCCTCTCACACCCTATCCTC 57.242 55.000 0.00 0.00 0.00 3.71
3400 3493 2.587777 TCTTCCTCTCACACCCTATCCT 59.412 50.000 0.00 0.00 0.00 3.24
3401 3494 2.696187 GTCTTCCTCTCACACCCTATCC 59.304 54.545 0.00 0.00 0.00 2.59
3402 3495 2.359531 CGTCTTCCTCTCACACCCTATC 59.640 54.545 0.00 0.00 0.00 2.08
3403 3496 2.379972 CGTCTTCCTCTCACACCCTAT 58.620 52.381 0.00 0.00 0.00 2.57
3404 3497 1.616187 CCGTCTTCCTCTCACACCCTA 60.616 57.143 0.00 0.00 0.00 3.53
3405 3498 0.900647 CCGTCTTCCTCTCACACCCT 60.901 60.000 0.00 0.00 0.00 4.34
3406 3499 0.898789 TCCGTCTTCCTCTCACACCC 60.899 60.000 0.00 0.00 0.00 4.61
3407 3500 1.134965 CATCCGTCTTCCTCTCACACC 60.135 57.143 0.00 0.00 0.00 4.16
3408 3501 1.737363 GCATCCGTCTTCCTCTCACAC 60.737 57.143 0.00 0.00 0.00 3.82
3409 3502 0.532573 GCATCCGTCTTCCTCTCACA 59.467 55.000 0.00 0.00 0.00 3.58
3410 3503 0.532573 TGCATCCGTCTTCCTCTCAC 59.467 55.000 0.00 0.00 0.00 3.51
3411 3504 0.532573 GTGCATCCGTCTTCCTCTCA 59.467 55.000 0.00 0.00 0.00 3.27
3412 3505 0.532573 TGTGCATCCGTCTTCCTCTC 59.467 55.000 0.00 0.00 0.00 3.20
3413 3506 0.976641 TTGTGCATCCGTCTTCCTCT 59.023 50.000 0.00 0.00 0.00 3.69
3414 3507 1.363744 CTTGTGCATCCGTCTTCCTC 58.636 55.000 0.00 0.00 0.00 3.71
3415 3508 0.036010 CCTTGTGCATCCGTCTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
3416 3509 1.648467 GCCTTGTGCATCCGTCTTCC 61.648 60.000 0.00 0.00 40.77 3.46
3417 3510 1.796796 GCCTTGTGCATCCGTCTTC 59.203 57.895 0.00 0.00 40.77 2.87
3418 3511 3.987404 GCCTTGTGCATCCGTCTT 58.013 55.556 0.00 0.00 40.77 3.01
3460 3553 5.852827 TCCTGCCTTTTGGTTAAAGAATTG 58.147 37.500 0.00 0.00 45.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.