Multiple sequence alignment - TraesCS2D01G176700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G176700 chr2D 100.000 6348 0 0 1 6348 120108522 120102175 0.000000e+00 11723.0
1 TraesCS2D01G176700 chr2D 88.281 128 14 1 509 635 250630728 250630855 1.100000e-32 152.0
2 TraesCS2D01G176700 chr2D 89.916 119 11 1 518 635 594382970 594382852 1.100000e-32 152.0
3 TraesCS2D01G176700 chr2A 95.791 5060 136 30 704 5735 123552859 123547849 0.000000e+00 8093.0
4 TraesCS2D01G176700 chr2A 87.364 459 54 3 1 459 123565745 123565291 2.030000e-144 523.0
5 TraesCS2D01G176700 chr2A 87.430 358 18 9 5990 6347 123533836 123533506 2.780000e-103 387.0
6 TraesCS2D01G176700 chr2A 88.285 239 17 6 475 705 123553404 123553169 6.270000e-70 276.0
7 TraesCS2D01G176700 chr2A 94.017 117 6 1 612 727 123660129 123660013 6.540000e-40 176.0
8 TraesCS2D01G176700 chr2A 98.611 72 1 0 5730 5801 123533948 123533877 1.860000e-25 128.0
9 TraesCS2D01G176700 chr2A 95.745 47 1 1 5823 5869 123533878 123533833 2.450000e-09 75.0
10 TraesCS2D01G176700 chr2B 91.908 5882 290 77 553 6347 172985047 172979265 0.000000e+00 8054.0
11 TraesCS2D01G176700 chr7A 80.571 350 55 9 5635 5973 675318168 675318515 2.270000e-64 257.0
12 TraesCS2D01G176700 chr7B 94.286 105 6 0 2471 2575 162120908 162120804 1.830000e-35 161.0
13 TraesCS2D01G176700 chr7B 91.818 110 8 1 2459 2567 632337884 632337775 1.100000e-32 152.0
14 TraesCS2D01G176700 chr3D 95.050 101 5 0 2470 2570 609983905 609983805 6.590000e-35 159.0
15 TraesCS2D01G176700 chr5B 94.175 103 6 0 2465 2567 166379080 166379182 2.370000e-34 158.0
16 TraesCS2D01G176700 chr3A 93.396 106 7 0 2466 2571 438607909 438607804 2.370000e-34 158.0
17 TraesCS2D01G176700 chr3A 95.000 100 5 0 2468 2567 470095679 470095778 2.370000e-34 158.0
18 TraesCS2D01G176700 chr4D 93.396 106 5 2 2471 2575 414999659 414999555 8.520000e-34 156.0
19 TraesCS2D01G176700 chr4D 87.786 131 15 1 506 635 106682053 106682183 1.100000e-32 152.0
20 TraesCS2D01G176700 chr1A 85.093 161 13 3 509 658 513727193 513727353 3.060000e-33 154.0
21 TraesCS2D01G176700 chr4A 88.281 128 14 1 509 635 450788274 450788401 1.100000e-32 152.0
22 TraesCS2D01G176700 chr7D 86.765 136 14 4 502 635 448755557 448755424 1.430000e-31 148.0
23 TraesCS2D01G176700 chr7D 100.000 28 0 0 5043 5070 165345848 165345875 1.200000e-02 52.8
24 TraesCS2D01G176700 chr5D 85.315 143 17 3 497 635 498297671 498297529 1.840000e-30 145.0
25 TraesCS2D01G176700 chr1D 97.059 34 1 0 625 658 5865760 5865793 2.470000e-04 58.4
26 TraesCS2D01G176700 chrUn 100.000 28 0 0 634 661 74365967 74365994 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G176700 chr2D 120102175 120108522 6347 True 11723.0 11723 100.000 1 6348 1 chr2D.!!$R1 6347
1 TraesCS2D01G176700 chr2A 123547849 123553404 5555 True 4184.5 8093 92.038 475 5735 2 chr2A.!!$R4 5260
2 TraesCS2D01G176700 chr2B 172979265 172985047 5782 True 8054.0 8054 91.908 553 6347 1 chr2B.!!$R1 5794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1266 0.030603 GACCCTTCCATCCCCTCTCT 60.031 60.000 0.00 0.0 0.00 3.10 F
1144 1461 0.109132 CCGTACGTTACCACTCACCC 60.109 60.000 15.21 0.0 0.00 4.61 F
1261 1578 0.753111 GGGAGGGCTGTAGGCATTTG 60.753 60.000 7.77 0.0 44.01 2.32 F
1262 1579 0.753111 GGAGGGCTGTAGGCATTTGG 60.753 60.000 7.77 0.0 44.01 3.28 F
1264 1581 1.000359 GGGCTGTAGGCATTTGGGT 60.000 57.895 7.77 0.0 44.01 4.51 F
1290 1618 1.001378 CCCTGTTTCCGCTTTGTCTTG 60.001 52.381 0.00 0.0 0.00 3.02 F
2207 2538 1.202580 GGGTGTGCTGTGCTCTATAGG 60.203 57.143 0.00 0.0 0.00 2.57 F
3646 4007 0.878523 TCTGTGCTTTGTCCGTTCCG 60.879 55.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 2513 1.759445 AGAGCACAGCACACCCTATAG 59.241 52.381 0.00 0.0 0.00 1.31 R
3082 3421 2.068519 GCTGCCCAAAACTGCAATAAC 58.931 47.619 0.00 0.0 32.76 1.89 R
3256 3595 4.019174 CAGGGCTAAGATCACCAACAAAT 58.981 43.478 0.00 0.0 0.00 2.32 R
3344 3683 9.905713 AGAAAGTAATGAATATAAGGAAGCACA 57.094 29.630 0.00 0.0 0.00 4.57 R
3624 3985 3.071479 GGAACGGACAAAGCACAGATTA 58.929 45.455 0.00 0.0 0.00 1.75 R
3646 4007 9.396938 CAAATAAATCAATTTCAGCAAAAACCC 57.603 29.630 0.00 0.0 0.00 4.11 R
3749 4110 2.768253 TCGAAATCCTCACTGCACAT 57.232 45.000 0.00 0.0 0.00 3.21 R
5354 5769 0.178891 AAGGTGAGCTCCCTCCAAGA 60.179 55.000 20.12 0.0 37.29 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.696899 AAAATTACAAAGGACTAGCCGC 57.303 40.909 0.00 0.00 43.43 6.53
22 23 3.629142 AATTACAAAGGACTAGCCGCT 57.371 42.857 0.00 0.00 43.43 5.52
23 24 2.380084 TTACAAAGGACTAGCCGCTG 57.620 50.000 2.16 0.00 43.43 5.18
24 25 0.108329 TACAAAGGACTAGCCGCTGC 60.108 55.000 2.16 0.00 43.43 5.25
40 41 6.918043 GCCGCTGCTTCATTAATATTTTAG 57.082 37.500 0.00 0.00 33.53 1.85
41 42 5.858581 GCCGCTGCTTCATTAATATTTTAGG 59.141 40.000 0.00 0.00 33.53 2.69
42 43 6.293955 GCCGCTGCTTCATTAATATTTTAGGA 60.294 38.462 0.00 0.00 33.53 2.94
43 44 7.575720 GCCGCTGCTTCATTAATATTTTAGGAT 60.576 37.037 0.00 0.00 33.53 3.24
44 45 8.299570 CCGCTGCTTCATTAATATTTTAGGATT 58.700 33.333 0.00 0.00 0.00 3.01
45 46 9.121517 CGCTGCTTCATTAATATTTTAGGATTG 57.878 33.333 0.00 0.00 0.00 2.67
46 47 9.971922 GCTGCTTCATTAATATTTTAGGATTGT 57.028 29.630 0.00 0.00 0.00 2.71
61 62 9.974980 TTTTAGGATTGTCCAATTGTTTCTTAC 57.025 29.630 4.43 0.00 39.61 2.34
62 63 8.934023 TTAGGATTGTCCAATTGTTTCTTACT 57.066 30.769 4.43 0.00 39.61 2.24
64 65 8.567285 AGGATTGTCCAATTGTTTCTTACTAG 57.433 34.615 4.43 0.00 39.61 2.57
65 66 7.121315 AGGATTGTCCAATTGTTTCTTACTAGC 59.879 37.037 4.43 0.00 39.61 3.42
66 67 7.094377 GGATTGTCCAATTGTTTCTTACTAGCA 60.094 37.037 4.43 0.00 36.28 3.49
67 68 7.759489 TTGTCCAATTGTTTCTTACTAGCAT 57.241 32.000 4.43 0.00 0.00 3.79
68 69 7.759489 TGTCCAATTGTTTCTTACTAGCATT 57.241 32.000 4.43 0.00 0.00 3.56
69 70 7.592938 TGTCCAATTGTTTCTTACTAGCATTG 58.407 34.615 4.43 0.00 0.00 2.82
70 71 7.446931 TGTCCAATTGTTTCTTACTAGCATTGA 59.553 33.333 4.43 0.00 0.00 2.57
71 72 8.296713 GTCCAATTGTTTCTTACTAGCATTGAA 58.703 33.333 4.43 0.00 0.00 2.69
72 73 8.855110 TCCAATTGTTTCTTACTAGCATTGAAA 58.145 29.630 4.43 0.00 0.00 2.69
73 74 9.643693 CCAATTGTTTCTTACTAGCATTGAAAT 57.356 29.630 4.43 0.00 0.00 2.17
87 88 4.811908 CATTGAAATGCAGTGATCAACCA 58.188 39.130 3.58 0.00 36.41 3.67
88 89 3.921119 TGAAATGCAGTGATCAACCAC 57.079 42.857 0.00 0.00 37.32 4.16
89 90 2.226200 TGAAATGCAGTGATCAACCACG 59.774 45.455 0.00 0.00 41.67 4.94
90 91 2.183478 AATGCAGTGATCAACCACGA 57.817 45.000 0.00 0.00 41.67 4.35
91 92 1.730501 ATGCAGTGATCAACCACGAG 58.269 50.000 0.00 0.00 41.67 4.18
92 93 0.950555 TGCAGTGATCAACCACGAGC 60.951 55.000 0.00 0.00 41.67 5.03
93 94 0.950555 GCAGTGATCAACCACGAGCA 60.951 55.000 0.00 0.00 41.67 4.26
96 97 3.215642 TGATCAACCACGAGCACAG 57.784 52.632 0.00 0.00 0.00 3.66
97 98 0.392706 TGATCAACCACGAGCACAGT 59.607 50.000 0.00 0.00 0.00 3.55
98 99 1.202639 TGATCAACCACGAGCACAGTT 60.203 47.619 0.00 0.00 0.00 3.16
99 100 1.195448 GATCAACCACGAGCACAGTTG 59.805 52.381 0.00 0.00 40.72 3.16
100 101 0.176910 TCAACCACGAGCACAGTTGA 59.823 50.000 7.11 7.11 44.61 3.18
101 102 1.013596 CAACCACGAGCACAGTTGAA 58.986 50.000 0.00 0.00 41.65 2.69
102 103 1.400142 CAACCACGAGCACAGTTGAAA 59.600 47.619 0.00 0.00 41.65 2.69
103 104 1.014352 ACCACGAGCACAGTTGAAAC 58.986 50.000 0.00 0.00 0.00 2.78
104 105 1.013596 CCACGAGCACAGTTGAAACA 58.986 50.000 0.00 0.00 0.00 2.83
105 106 1.603802 CCACGAGCACAGTTGAAACAT 59.396 47.619 0.00 0.00 0.00 2.71
106 107 2.602933 CCACGAGCACAGTTGAAACATG 60.603 50.000 0.00 0.00 0.00 3.21
107 108 1.603802 ACGAGCACAGTTGAAACATGG 59.396 47.619 0.00 0.00 0.00 3.66
108 109 1.603802 CGAGCACAGTTGAAACATGGT 59.396 47.619 0.00 0.00 32.83 3.55
109 110 2.033299 CGAGCACAGTTGAAACATGGTT 59.967 45.455 0.00 0.00 31.11 3.67
110 111 3.632189 GAGCACAGTTGAAACATGGTTC 58.368 45.455 16.88 16.88 31.11 3.62
111 112 2.362077 AGCACAGTTGAAACATGGTTCC 59.638 45.455 20.61 6.34 0.00 3.62
112 113 2.858260 GCACAGTTGAAACATGGTTCCG 60.858 50.000 20.61 9.05 0.00 4.30
113 114 2.616376 CACAGTTGAAACATGGTTCCGA 59.384 45.455 20.61 6.79 0.00 4.55
114 115 2.878406 ACAGTTGAAACATGGTTCCGAG 59.122 45.455 20.61 10.31 0.00 4.63
115 116 1.880027 AGTTGAAACATGGTTCCGAGC 59.120 47.619 20.61 5.35 0.00 5.03
116 117 1.606668 GTTGAAACATGGTTCCGAGCA 59.393 47.619 20.61 0.00 37.73 4.26
117 118 1.974265 TGAAACATGGTTCCGAGCAA 58.026 45.000 20.61 0.00 36.76 3.91
118 119 1.606668 TGAAACATGGTTCCGAGCAAC 59.393 47.619 20.61 0.00 36.76 4.17
119 120 0.591170 AAACATGGTTCCGAGCAACG 59.409 50.000 0.00 0.00 36.76 4.10
120 121 1.852067 AACATGGTTCCGAGCAACGC 61.852 55.000 0.00 0.00 41.07 4.84
121 122 2.031919 ATGGTTCCGAGCAACGCA 59.968 55.556 0.00 0.00 41.07 5.24
122 123 2.034879 ATGGTTCCGAGCAACGCAG 61.035 57.895 0.00 0.00 41.07 5.18
123 124 2.357034 GGTTCCGAGCAACGCAGA 60.357 61.111 0.00 0.00 41.07 4.26
124 125 1.959226 GGTTCCGAGCAACGCAGAA 60.959 57.895 0.00 0.00 41.07 3.02
125 126 1.493311 GTTCCGAGCAACGCAGAAG 59.507 57.895 0.00 0.00 41.07 2.85
126 127 1.667830 TTCCGAGCAACGCAGAAGG 60.668 57.895 0.00 0.00 41.07 3.46
127 128 2.357517 CCGAGCAACGCAGAAGGT 60.358 61.111 0.00 0.00 41.07 3.50
128 129 1.961277 CCGAGCAACGCAGAAGGTT 60.961 57.895 0.00 0.00 41.07 3.50
129 130 1.493311 CGAGCAACGCAGAAGGTTC 59.507 57.895 0.00 0.00 34.51 3.62
130 131 1.221466 CGAGCAACGCAGAAGGTTCA 61.221 55.000 0.00 0.00 34.51 3.18
131 132 0.235926 GAGCAACGCAGAAGGTTCAC 59.764 55.000 0.00 0.00 0.00 3.18
132 133 0.179045 AGCAACGCAGAAGGTTCACT 60.179 50.000 0.00 0.00 0.00 3.41
133 134 0.040958 GCAACGCAGAAGGTTCACTG 60.041 55.000 0.00 0.00 37.22 3.66
134 135 0.588252 CAACGCAGAAGGTTCACTGG 59.412 55.000 0.00 0.00 35.05 4.00
135 136 0.468226 AACGCAGAAGGTTCACTGGA 59.532 50.000 0.00 0.00 35.05 3.86
136 137 0.034059 ACGCAGAAGGTTCACTGGAG 59.966 55.000 0.00 0.00 35.05 3.86
137 138 0.671781 CGCAGAAGGTTCACTGGAGG 60.672 60.000 0.00 0.00 35.05 4.30
138 139 0.398318 GCAGAAGGTTCACTGGAGGT 59.602 55.000 0.00 0.00 35.05 3.85
139 140 1.879796 GCAGAAGGTTCACTGGAGGTG 60.880 57.143 0.00 0.00 46.60 4.00
154 155 7.589958 ACTGGAGGTGAATGTAGTTAGATAG 57.410 40.000 0.00 0.00 0.00 2.08
155 156 7.126733 ACTGGAGGTGAATGTAGTTAGATAGT 58.873 38.462 0.00 0.00 0.00 2.12
156 157 7.285858 ACTGGAGGTGAATGTAGTTAGATAGTC 59.714 40.741 0.00 0.00 0.00 2.59
157 158 7.123383 TGGAGGTGAATGTAGTTAGATAGTCA 58.877 38.462 0.00 0.00 0.00 3.41
158 159 7.618117 TGGAGGTGAATGTAGTTAGATAGTCAA 59.382 37.037 0.00 0.00 0.00 3.18
159 160 8.475639 GGAGGTGAATGTAGTTAGATAGTCAAA 58.524 37.037 0.00 0.00 0.00 2.69
166 167 7.751047 TGTAGTTAGATAGTCAAATTGTCGC 57.249 36.000 0.00 0.00 0.00 5.19
167 168 6.755141 TGTAGTTAGATAGTCAAATTGTCGCC 59.245 38.462 0.00 0.00 0.00 5.54
168 169 4.804139 AGTTAGATAGTCAAATTGTCGCCG 59.196 41.667 0.00 0.00 0.00 6.46
169 170 3.247006 AGATAGTCAAATTGTCGCCGT 57.753 42.857 0.00 0.00 0.00 5.68
170 171 3.596214 AGATAGTCAAATTGTCGCCGTT 58.404 40.909 0.00 0.00 0.00 4.44
171 172 4.751060 AGATAGTCAAATTGTCGCCGTTA 58.249 39.130 0.00 0.00 0.00 3.18
172 173 5.357257 AGATAGTCAAATTGTCGCCGTTAT 58.643 37.500 0.00 0.00 0.00 1.89
173 174 3.740044 AGTCAAATTGTCGCCGTTATG 57.260 42.857 0.00 0.00 0.00 1.90
174 175 2.159572 AGTCAAATTGTCGCCGTTATGC 60.160 45.455 0.00 0.00 0.00 3.14
175 176 1.807142 TCAAATTGTCGCCGTTATGCA 59.193 42.857 0.00 0.00 0.00 3.96
176 177 2.159585 TCAAATTGTCGCCGTTATGCAG 60.160 45.455 0.00 0.00 0.00 4.41
177 178 1.448985 AATTGTCGCCGTTATGCAGT 58.551 45.000 0.00 0.00 0.00 4.40
178 179 1.448985 ATTGTCGCCGTTATGCAGTT 58.551 45.000 0.00 0.00 0.00 3.16
179 180 0.515127 TTGTCGCCGTTATGCAGTTG 59.485 50.000 0.00 0.00 0.00 3.16
180 181 0.601576 TGTCGCCGTTATGCAGTTGT 60.602 50.000 0.00 0.00 0.00 3.32
181 182 0.179225 GTCGCCGTTATGCAGTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
196 197 5.725110 CAGTTGTGCTAGTGTTATGGATC 57.275 43.478 0.00 0.00 0.00 3.36
197 198 5.178061 CAGTTGTGCTAGTGTTATGGATCA 58.822 41.667 0.00 0.00 0.00 2.92
198 199 5.819379 CAGTTGTGCTAGTGTTATGGATCAT 59.181 40.000 0.00 0.00 0.00 2.45
199 200 5.819379 AGTTGTGCTAGTGTTATGGATCATG 59.181 40.000 0.00 0.00 0.00 3.07
200 201 4.129380 TGTGCTAGTGTTATGGATCATGC 58.871 43.478 0.00 0.00 0.00 4.06
201 202 3.185188 GTGCTAGTGTTATGGATCATGCG 59.815 47.826 0.00 0.00 0.00 4.73
202 203 2.738846 GCTAGTGTTATGGATCATGCGG 59.261 50.000 0.00 0.00 0.00 5.69
203 204 2.260844 AGTGTTATGGATCATGCGGG 57.739 50.000 0.00 0.00 0.00 6.13
204 205 1.490490 AGTGTTATGGATCATGCGGGT 59.510 47.619 0.00 0.00 0.00 5.28
205 206 1.603802 GTGTTATGGATCATGCGGGTG 59.396 52.381 0.00 0.00 0.00 4.61
206 207 1.211703 TGTTATGGATCATGCGGGTGT 59.788 47.619 0.00 0.00 0.00 4.16
207 208 2.436173 TGTTATGGATCATGCGGGTGTA 59.564 45.455 0.00 0.00 0.00 2.90
208 209 3.072330 TGTTATGGATCATGCGGGTGTAT 59.928 43.478 0.00 0.00 0.00 2.29
209 210 2.957402 ATGGATCATGCGGGTGTATT 57.043 45.000 0.00 0.00 0.00 1.89
210 211 5.221742 TGTTATGGATCATGCGGGTGTATTA 60.222 40.000 0.00 0.00 0.00 0.98
211 212 3.847671 TGGATCATGCGGGTGTATTAA 57.152 42.857 0.00 0.00 0.00 1.40
212 213 4.365514 TGGATCATGCGGGTGTATTAAT 57.634 40.909 0.00 0.00 0.00 1.40
213 214 4.724399 TGGATCATGCGGGTGTATTAATT 58.276 39.130 0.00 0.00 0.00 1.40
214 215 5.136828 TGGATCATGCGGGTGTATTAATTT 58.863 37.500 0.00 0.00 0.00 1.82
215 216 5.596361 TGGATCATGCGGGTGTATTAATTTT 59.404 36.000 0.00 0.00 0.00 1.82
216 217 5.920273 GGATCATGCGGGTGTATTAATTTTG 59.080 40.000 0.00 0.00 0.00 2.44
217 218 5.906113 TCATGCGGGTGTATTAATTTTGT 57.094 34.783 0.00 0.00 0.00 2.83
218 219 5.645624 TCATGCGGGTGTATTAATTTTGTG 58.354 37.500 0.00 0.00 0.00 3.33
219 220 5.184096 TCATGCGGGTGTATTAATTTTGTGT 59.816 36.000 0.00 0.00 0.00 3.72
220 221 6.374613 TCATGCGGGTGTATTAATTTTGTGTA 59.625 34.615 0.00 0.00 0.00 2.90
221 222 6.570672 TGCGGGTGTATTAATTTTGTGTAA 57.429 33.333 0.00 0.00 0.00 2.41
222 223 7.159322 TGCGGGTGTATTAATTTTGTGTAAT 57.841 32.000 0.00 0.00 0.00 1.89
223 224 7.030165 TGCGGGTGTATTAATTTTGTGTAATG 58.970 34.615 0.00 0.00 0.00 1.90
224 225 6.020201 GCGGGTGTATTAATTTTGTGTAATGC 60.020 38.462 0.00 0.00 0.00 3.56
225 226 6.195613 CGGGTGTATTAATTTTGTGTAATGCG 59.804 38.462 0.00 0.00 0.00 4.73
226 227 7.251994 GGGTGTATTAATTTTGTGTAATGCGA 58.748 34.615 0.00 0.00 0.00 5.10
227 228 7.755822 GGGTGTATTAATTTTGTGTAATGCGAA 59.244 33.333 0.00 0.00 0.00 4.70
228 229 8.794406 GGTGTATTAATTTTGTGTAATGCGAAG 58.206 33.333 0.00 0.00 0.00 3.79
245 246 3.986128 CGAAGCACTTAATGTAACACCG 58.014 45.455 0.00 0.00 0.00 4.94
246 247 3.676172 CGAAGCACTTAATGTAACACCGA 59.324 43.478 0.00 0.00 0.00 4.69
247 248 4.328983 CGAAGCACTTAATGTAACACCGAT 59.671 41.667 0.00 0.00 0.00 4.18
248 249 5.545658 AAGCACTTAATGTAACACCGATG 57.454 39.130 0.00 0.00 0.00 3.84
249 250 3.374058 AGCACTTAATGTAACACCGATGC 59.626 43.478 0.00 0.00 0.00 3.91
250 251 3.126171 GCACTTAATGTAACACCGATGCA 59.874 43.478 0.00 0.00 0.00 3.96
251 252 4.647964 CACTTAATGTAACACCGATGCAC 58.352 43.478 0.00 0.00 0.00 4.57
252 253 3.687698 ACTTAATGTAACACCGATGCACC 59.312 43.478 0.00 0.00 0.00 5.01
253 254 1.083489 AATGTAACACCGATGCACCG 58.917 50.000 0.00 0.00 0.00 4.94
262 263 3.258225 CGATGCACCGGAGAACTAG 57.742 57.895 9.46 0.00 0.00 2.57
263 264 0.738975 CGATGCACCGGAGAACTAGA 59.261 55.000 9.46 0.00 0.00 2.43
264 265 1.534175 CGATGCACCGGAGAACTAGAC 60.534 57.143 9.46 0.00 0.00 2.59
265 266 1.751924 GATGCACCGGAGAACTAGACT 59.248 52.381 9.46 0.00 0.00 3.24
266 267 1.629043 TGCACCGGAGAACTAGACTT 58.371 50.000 9.46 0.00 0.00 3.01
267 268 1.968493 TGCACCGGAGAACTAGACTTT 59.032 47.619 9.46 0.00 0.00 2.66
268 269 2.367567 TGCACCGGAGAACTAGACTTTT 59.632 45.455 9.46 0.00 0.00 2.27
269 270 2.737252 GCACCGGAGAACTAGACTTTTG 59.263 50.000 9.46 0.00 0.00 2.44
270 271 2.737252 CACCGGAGAACTAGACTTTTGC 59.263 50.000 9.46 0.00 0.00 3.68
271 272 2.633481 ACCGGAGAACTAGACTTTTGCT 59.367 45.455 9.46 0.00 0.00 3.91
272 273 3.830755 ACCGGAGAACTAGACTTTTGCTA 59.169 43.478 9.46 0.00 0.00 3.49
273 274 4.082136 ACCGGAGAACTAGACTTTTGCTAG 60.082 45.833 9.46 0.00 40.84 3.42
274 275 4.425520 CGGAGAACTAGACTTTTGCTAGG 58.574 47.826 0.00 0.00 39.67 3.02
275 276 4.082136 CGGAGAACTAGACTTTTGCTAGGT 60.082 45.833 0.00 0.00 38.54 3.08
279 280 6.713792 GAACTAGACTTTTGCTAGGTCTTG 57.286 41.667 8.11 9.41 45.11 3.02
280 281 4.570930 ACTAGACTTTTGCTAGGTCTTGC 58.429 43.478 8.89 0.00 39.67 4.01
281 282 3.492102 AGACTTTTGCTAGGTCTTGCA 57.508 42.857 3.18 3.18 37.04 4.08
282 283 3.820557 AGACTTTTGCTAGGTCTTGCAA 58.179 40.909 13.94 13.94 46.26 4.08
287 288 2.299993 TGCTAGGTCTTGCAAGATCG 57.700 50.000 30.65 19.32 41.09 3.69
288 289 1.824852 TGCTAGGTCTTGCAAGATCGA 59.175 47.619 30.65 24.86 41.09 3.59
289 290 2.233676 TGCTAGGTCTTGCAAGATCGAA 59.766 45.455 30.65 21.64 41.09 3.71
290 291 2.863137 GCTAGGTCTTGCAAGATCGAAG 59.137 50.000 30.65 28.80 41.09 3.79
291 292 2.393271 AGGTCTTGCAAGATCGAAGG 57.607 50.000 30.65 1.82 41.09 3.46
292 293 0.729690 GGTCTTGCAAGATCGAAGGC 59.270 55.000 30.65 16.15 37.39 4.35
293 294 1.677217 GGTCTTGCAAGATCGAAGGCT 60.677 52.381 30.65 0.00 37.39 4.58
294 295 2.418746 GGTCTTGCAAGATCGAAGGCTA 60.419 50.000 30.65 2.62 37.39 3.93
295 296 3.462021 GTCTTGCAAGATCGAAGGCTAT 58.538 45.455 30.65 0.00 37.39 2.97
296 297 3.492756 GTCTTGCAAGATCGAAGGCTATC 59.507 47.826 30.65 10.59 37.39 2.08
297 298 3.386078 TCTTGCAAGATCGAAGGCTATCT 59.614 43.478 25.16 0.00 33.87 1.98
298 299 3.103447 TGCAAGATCGAAGGCTATCTG 57.897 47.619 0.00 0.00 32.79 2.90
299 300 2.695147 TGCAAGATCGAAGGCTATCTGA 59.305 45.455 0.00 0.00 32.79 3.27
300 301 3.323115 TGCAAGATCGAAGGCTATCTGAT 59.677 43.478 0.00 0.00 32.79 2.90
301 302 4.202295 TGCAAGATCGAAGGCTATCTGATT 60.202 41.667 0.00 0.00 32.79 2.57
302 303 4.754114 GCAAGATCGAAGGCTATCTGATTT 59.246 41.667 0.00 0.00 32.79 2.17
303 304 5.238214 GCAAGATCGAAGGCTATCTGATTTT 59.762 40.000 0.00 0.00 32.79 1.82
304 305 6.565623 GCAAGATCGAAGGCTATCTGATTTTC 60.566 42.308 0.00 0.00 32.79 2.29
305 306 5.226396 AGATCGAAGGCTATCTGATTTTCG 58.774 41.667 14.50 14.50 38.86 3.46
306 307 4.386867 TCGAAGGCTATCTGATTTTCGT 57.613 40.909 17.47 1.43 38.68 3.85
307 308 5.509716 TCGAAGGCTATCTGATTTTCGTA 57.490 39.130 17.47 8.61 38.68 3.43
308 309 5.898174 TCGAAGGCTATCTGATTTTCGTAA 58.102 37.500 17.47 5.58 38.68 3.18
309 310 6.334989 TCGAAGGCTATCTGATTTTCGTAAA 58.665 36.000 17.47 0.00 38.68 2.01
310 311 6.475727 TCGAAGGCTATCTGATTTTCGTAAAG 59.524 38.462 17.47 2.44 38.68 1.85
311 312 6.255887 CGAAGGCTATCTGATTTTCGTAAAGT 59.744 38.462 0.00 0.00 34.43 2.66
312 313 7.434307 CGAAGGCTATCTGATTTTCGTAAAGTA 59.566 37.037 0.00 0.00 34.43 2.24
313 314 9.262358 GAAGGCTATCTGATTTTCGTAAAGTAT 57.738 33.333 0.00 0.00 0.00 2.12
314 315 8.594881 AGGCTATCTGATTTTCGTAAAGTATG 57.405 34.615 0.00 0.00 0.00 2.39
315 316 8.421784 AGGCTATCTGATTTTCGTAAAGTATGA 58.578 33.333 0.00 0.00 0.00 2.15
316 317 9.209175 GGCTATCTGATTTTCGTAAAGTATGAT 57.791 33.333 0.00 0.00 0.00 2.45
355 356 9.586732 AGCTATCTTAAAAATATACCCATTGCA 57.413 29.630 0.00 0.00 0.00 4.08
364 365 6.899393 AATATACCCATTGCAACATACAGG 57.101 37.500 0.00 0.00 0.00 4.00
365 366 2.603075 ACCCATTGCAACATACAGGT 57.397 45.000 0.00 0.00 0.00 4.00
366 367 3.730215 ACCCATTGCAACATACAGGTA 57.270 42.857 0.00 0.00 0.00 3.08
367 368 3.352648 ACCCATTGCAACATACAGGTAC 58.647 45.455 0.00 0.00 0.00 3.34
368 369 3.010138 ACCCATTGCAACATACAGGTACT 59.990 43.478 0.00 0.00 43.88 2.73
369 370 4.016444 CCCATTGCAACATACAGGTACTT 58.984 43.478 0.00 0.00 34.60 2.24
370 371 5.189928 CCCATTGCAACATACAGGTACTTA 58.810 41.667 0.00 0.00 34.60 2.24
371 372 5.065988 CCCATTGCAACATACAGGTACTTAC 59.934 44.000 0.00 0.00 34.60 2.34
372 373 5.645929 CCATTGCAACATACAGGTACTTACA 59.354 40.000 0.00 0.00 34.60 2.41
373 374 6.150307 CCATTGCAACATACAGGTACTTACAA 59.850 38.462 0.00 0.00 34.60 2.41
374 375 7.308891 CCATTGCAACATACAGGTACTTACAAA 60.309 37.037 0.00 0.00 34.60 2.83
375 376 6.795098 TGCAACATACAGGTACTTACAAAG 57.205 37.500 0.00 0.00 34.60 2.77
376 377 6.292923 TGCAACATACAGGTACTTACAAAGT 58.707 36.000 0.00 0.00 45.40 2.66
377 378 7.443477 TGCAACATACAGGTACTTACAAAGTA 58.557 34.615 0.00 0.00 42.81 2.24
378 379 7.932491 TGCAACATACAGGTACTTACAAAGTAA 59.068 33.333 1.26 0.00 44.95 2.24
379 380 8.440833 GCAACATACAGGTACTTACAAAGTAAG 58.559 37.037 13.71 13.71 44.95 2.34
380 381 9.485206 CAACATACAGGTACTTACAAAGTAAGT 57.515 33.333 21.78 21.78 44.95 2.24
381 382 9.702494 AACATACAGGTACTTACAAAGTAAGTC 57.298 33.333 21.75 14.60 44.95 3.01
382 383 8.863086 ACATACAGGTACTTACAAAGTAAGTCA 58.137 33.333 21.75 9.38 44.95 3.41
383 384 9.701098 CATACAGGTACTTACAAAGTAAGTCAA 57.299 33.333 21.75 7.03 44.95 3.18
396 397 9.295825 ACAAAGTAAGTCAATAATTGATGGTGA 57.704 29.630 0.00 0.00 42.47 4.02
411 412 9.730705 AATTGATGGTGATATAATTCAGACGAT 57.269 29.630 0.00 0.00 0.00 3.73
412 413 9.730705 ATTGATGGTGATATAATTCAGACGATT 57.269 29.630 0.00 0.00 0.00 3.34
413 414 9.559732 TTGATGGTGATATAATTCAGACGATTT 57.440 29.630 0.00 0.00 0.00 2.17
414 415 9.559732 TGATGGTGATATAATTCAGACGATTTT 57.440 29.630 0.00 0.00 0.00 1.82
425 426 8.965986 AATTCAGACGATTTTTAGGTAAAAGC 57.034 30.769 0.00 0.00 39.00 3.51
426 427 7.499321 TTCAGACGATTTTTAGGTAAAAGCA 57.501 32.000 0.00 0.00 41.13 3.91
427 428 7.129109 TCAGACGATTTTTAGGTAAAAGCAG 57.871 36.000 0.00 0.00 41.13 4.24
428 429 6.708949 TCAGACGATTTTTAGGTAAAAGCAGT 59.291 34.615 0.00 0.00 41.13 4.40
429 430 6.797033 CAGACGATTTTTAGGTAAAAGCAGTG 59.203 38.462 0.00 0.00 41.13 3.66
430 431 6.708949 AGACGATTTTTAGGTAAAAGCAGTGA 59.291 34.615 0.00 0.00 41.13 3.41
431 432 7.227910 AGACGATTTTTAGGTAAAAGCAGTGAA 59.772 33.333 0.00 0.00 41.13 3.18
432 433 7.360361 ACGATTTTTAGGTAAAAGCAGTGAAG 58.640 34.615 0.00 0.00 41.13 3.02
433 434 6.801862 CGATTTTTAGGTAAAAGCAGTGAAGG 59.198 38.462 0.00 0.00 41.13 3.46
434 435 6.399639 TTTTTAGGTAAAAGCAGTGAAGGG 57.600 37.500 0.00 0.00 36.62 3.95
435 436 4.986054 TTAGGTAAAAGCAGTGAAGGGA 57.014 40.909 0.00 0.00 0.00 4.20
436 437 3.425162 AGGTAAAAGCAGTGAAGGGAG 57.575 47.619 0.00 0.00 0.00 4.30
437 438 2.040412 AGGTAAAAGCAGTGAAGGGAGG 59.960 50.000 0.00 0.00 0.00 4.30
438 439 2.039879 GGTAAAAGCAGTGAAGGGAGGA 59.960 50.000 0.00 0.00 0.00 3.71
439 440 3.497942 GGTAAAAGCAGTGAAGGGAGGAA 60.498 47.826 0.00 0.00 0.00 3.36
440 441 3.312736 AAAAGCAGTGAAGGGAGGAAA 57.687 42.857 0.00 0.00 0.00 3.13
441 442 2.575805 AAGCAGTGAAGGGAGGAAAG 57.424 50.000 0.00 0.00 0.00 2.62
442 443 1.439543 AGCAGTGAAGGGAGGAAAGT 58.560 50.000 0.00 0.00 0.00 2.66
443 444 2.621070 AGCAGTGAAGGGAGGAAAGTA 58.379 47.619 0.00 0.00 0.00 2.24
444 445 3.185455 AGCAGTGAAGGGAGGAAAGTAT 58.815 45.455 0.00 0.00 0.00 2.12
445 446 3.054802 AGCAGTGAAGGGAGGAAAGTATG 60.055 47.826 0.00 0.00 0.00 2.39
446 447 3.307762 GCAGTGAAGGGAGGAAAGTATGT 60.308 47.826 0.00 0.00 0.00 2.29
447 448 4.081087 GCAGTGAAGGGAGGAAAGTATGTA 60.081 45.833 0.00 0.00 0.00 2.29
448 449 5.570844 GCAGTGAAGGGAGGAAAGTATGTAA 60.571 44.000 0.00 0.00 0.00 2.41
449 450 6.472887 CAGTGAAGGGAGGAAAGTATGTAAA 58.527 40.000 0.00 0.00 0.00 2.01
450 451 6.595716 CAGTGAAGGGAGGAAAGTATGTAAAG 59.404 42.308 0.00 0.00 0.00 1.85
451 452 6.272558 AGTGAAGGGAGGAAAGTATGTAAAGT 59.727 38.462 0.00 0.00 0.00 2.66
452 453 6.940867 GTGAAGGGAGGAAAGTATGTAAAGTT 59.059 38.462 0.00 0.00 0.00 2.66
453 454 6.940298 TGAAGGGAGGAAAGTATGTAAAGTTG 59.060 38.462 0.00 0.00 0.00 3.16
454 455 5.816682 AGGGAGGAAAGTATGTAAAGTTGG 58.183 41.667 0.00 0.00 0.00 3.77
455 456 5.550403 AGGGAGGAAAGTATGTAAAGTTGGA 59.450 40.000 0.00 0.00 0.00 3.53
456 457 6.217693 AGGGAGGAAAGTATGTAAAGTTGGAT 59.782 38.462 0.00 0.00 0.00 3.41
457 458 6.318900 GGGAGGAAAGTATGTAAAGTTGGATG 59.681 42.308 0.00 0.00 0.00 3.51
458 459 7.110155 GGAGGAAAGTATGTAAAGTTGGATGA 58.890 38.462 0.00 0.00 0.00 2.92
459 460 7.281100 GGAGGAAAGTATGTAAAGTTGGATGAG 59.719 40.741 0.00 0.00 0.00 2.90
460 461 7.690256 AGGAAAGTATGTAAAGTTGGATGAGT 58.310 34.615 0.00 0.00 0.00 3.41
461 462 7.607991 AGGAAAGTATGTAAAGTTGGATGAGTG 59.392 37.037 0.00 0.00 0.00 3.51
462 463 7.606456 GGAAAGTATGTAAAGTTGGATGAGTGA 59.394 37.037 0.00 0.00 0.00 3.41
463 464 8.918202 AAAGTATGTAAAGTTGGATGAGTGAA 57.082 30.769 0.00 0.00 0.00 3.18
464 465 7.907214 AGTATGTAAAGTTGGATGAGTGAAC 57.093 36.000 0.00 0.00 0.00 3.18
465 466 6.879458 AGTATGTAAAGTTGGATGAGTGAACC 59.121 38.462 0.00 0.00 0.00 3.62
466 467 5.042463 TGTAAAGTTGGATGAGTGAACCA 57.958 39.130 0.00 0.00 0.00 3.67
467 468 5.630121 TGTAAAGTTGGATGAGTGAACCAT 58.370 37.500 0.00 0.00 33.56 3.55
468 469 6.774673 TGTAAAGTTGGATGAGTGAACCATA 58.225 36.000 0.00 0.00 33.56 2.74
469 470 7.402054 TGTAAAGTTGGATGAGTGAACCATAT 58.598 34.615 0.00 0.00 33.56 1.78
470 471 6.764308 AAAGTTGGATGAGTGAACCATATG 57.236 37.500 0.00 0.00 33.56 1.78
471 472 5.441718 AGTTGGATGAGTGAACCATATGT 57.558 39.130 1.24 0.00 33.56 2.29
472 473 5.431765 AGTTGGATGAGTGAACCATATGTC 58.568 41.667 1.24 0.00 33.56 3.06
473 474 5.190528 AGTTGGATGAGTGAACCATATGTCT 59.809 40.000 1.24 0.00 33.56 3.41
474 475 5.698741 TGGATGAGTGAACCATATGTCTT 57.301 39.130 1.24 0.00 0.00 3.01
475 476 6.065976 TGGATGAGTGAACCATATGTCTTT 57.934 37.500 1.24 0.00 0.00 2.52
476 477 7.194112 TGGATGAGTGAACCATATGTCTTTA 57.806 36.000 1.24 0.00 0.00 1.85
477 478 7.629157 TGGATGAGTGAACCATATGTCTTTAA 58.371 34.615 1.24 0.00 0.00 1.52
478 479 8.106462 TGGATGAGTGAACCATATGTCTTTAAA 58.894 33.333 1.24 0.00 0.00 1.52
479 480 8.616076 GGATGAGTGAACCATATGTCTTTAAAG 58.384 37.037 9.04 9.04 0.00 1.85
480 481 9.167311 GATGAGTGAACCATATGTCTTTAAAGT 57.833 33.333 14.74 0.00 0.00 2.66
530 531 9.482627 AATGCTCTCTCCGTTTCTAAATATAAG 57.517 33.333 0.00 0.00 0.00 1.73
532 533 8.475639 TGCTCTCTCCGTTTCTAAATATAAGTT 58.524 33.333 0.00 0.00 0.00 2.66
533 534 8.970293 GCTCTCTCCGTTTCTAAATATAAGTTC 58.030 37.037 0.00 0.00 0.00 3.01
750 1067 5.629849 TCGCGTCAAGAAAAAGAAAACAAAA 59.370 32.000 5.77 0.00 0.00 2.44
805 1122 3.877508 CTCTCTCCAAACCGAAAACAAGT 59.122 43.478 0.00 0.00 0.00 3.16
836 1153 3.873812 GGCCCACGTATCCAGGGG 61.874 72.222 9.75 6.05 43.04 4.79
863 1180 3.108144 CCAAGACACGAAGCAAAACAAG 58.892 45.455 0.00 0.00 0.00 3.16
907 1224 5.300286 CCCTTCATCTCTCTTTCTCTCTCTC 59.700 48.000 0.00 0.00 0.00 3.20
949 1266 0.030603 GACCCTTCCATCCCCTCTCT 60.031 60.000 0.00 0.00 0.00 3.10
1144 1461 0.109132 CCGTACGTTACCACTCACCC 60.109 60.000 15.21 0.00 0.00 4.61
1147 1464 0.968405 TACGTTACCACTCACCCACC 59.032 55.000 0.00 0.00 0.00 4.61
1198 1515 2.739287 CGCCGCGGAAGTTTGGTA 60.739 61.111 33.48 0.00 0.00 3.25
1199 1516 2.104253 CGCCGCGGAAGTTTGGTAT 61.104 57.895 33.48 0.00 0.00 2.73
1204 1521 1.102978 GCGGAAGTTTGGTATGCCAT 58.897 50.000 2.33 0.00 45.56 4.40
1206 1523 2.290641 GCGGAAGTTTGGTATGCCATAG 59.709 50.000 2.33 0.00 45.56 2.23
1261 1578 0.753111 GGGAGGGCTGTAGGCATTTG 60.753 60.000 7.77 0.00 44.01 2.32
1262 1579 0.753111 GGAGGGCTGTAGGCATTTGG 60.753 60.000 7.77 0.00 44.01 3.28
1264 1581 1.000359 GGGCTGTAGGCATTTGGGT 60.000 57.895 7.77 0.00 44.01 4.51
1290 1618 1.001378 CCCTGTTTCCGCTTTGTCTTG 60.001 52.381 0.00 0.00 0.00 3.02
1865 2194 6.509418 TTATAGTGTTCTGGACATTTTGGC 57.491 37.500 0.00 0.00 41.10 4.52
2089 2419 8.240682 TCCAATACTTTGCATTTACACATACAC 58.759 33.333 0.00 0.00 0.00 2.90
2141 2471 7.023575 CGCAAAGCATGTAGAGTCTTTTATTT 58.976 34.615 0.00 0.00 0.00 1.40
2182 2513 4.503714 TTGGAACTTCCTGGTGATATCC 57.496 45.455 9.31 0.00 37.46 2.59
2207 2538 1.202580 GGGTGTGCTGTGCTCTATAGG 60.203 57.143 0.00 0.00 0.00 2.57
2417 2752 6.432607 TTTTGTTTGCATGCTTTGAATTGA 57.567 29.167 20.33 0.00 0.00 2.57
2450 2785 8.663911 CATTTTGAACTTTTACTTCCTTTTGCA 58.336 29.630 0.00 0.00 0.00 4.08
2451 2786 7.589574 TTTGAACTTTTACTTCCTTTTGCAC 57.410 32.000 0.00 0.00 0.00 4.57
2637 2974 7.484959 GTCTGGCAAATACTTAATTACAAGCAC 59.515 37.037 0.00 0.00 0.00 4.40
2639 2976 7.312154 TGGCAAATACTTAATTACAAGCACTG 58.688 34.615 0.00 0.00 0.00 3.66
2915 3254 5.837437 ACTATATCTTTTCTGCAGTCCTCG 58.163 41.667 14.67 0.17 0.00 4.63
2976 3315 5.278758 GCCCTAGCAATTTTGACACTTAACA 60.279 40.000 0.00 0.00 39.53 2.41
3082 3421 8.627403 TCCAATACTATACCTTACTGAAGAACG 58.373 37.037 0.00 0.00 34.25 3.95
3624 3985 3.588842 TGATTCTCAGTCCCAACCATCTT 59.411 43.478 0.00 0.00 0.00 2.40
3646 4007 0.878523 TCTGTGCTTTGTCCGTTCCG 60.879 55.000 0.00 0.00 0.00 4.30
3749 4110 7.696992 ACTTTTCTTGTTCAGACCTGTTTTA 57.303 32.000 0.00 0.00 0.00 1.52
3766 4127 6.012658 TGTTTTATGTGCAGTGAGGATTTC 57.987 37.500 0.00 0.00 0.00 2.17
3780 4141 4.280677 TGAGGATTTCGATTTGTTTTGCCT 59.719 37.500 0.00 0.00 0.00 4.75
3781 4142 5.475220 TGAGGATTTCGATTTGTTTTGCCTA 59.525 36.000 0.00 0.00 0.00 3.93
3782 4143 6.152661 TGAGGATTTCGATTTGTTTTGCCTAT 59.847 34.615 0.00 0.00 0.00 2.57
3783 4144 7.338196 TGAGGATTTCGATTTGTTTTGCCTATA 59.662 33.333 0.00 0.00 0.00 1.31
3822 4183 7.789341 TTTGATATTTTCCACGATTGAAACG 57.211 32.000 0.00 0.00 31.78 3.60
3984 4346 0.461961 GCGAGGACCAGCTAACATCT 59.538 55.000 4.89 0.00 0.00 2.90
4108 4476 6.155475 TGTTGGTTTCAAAAGATGGGTTAG 57.845 37.500 0.00 0.00 34.28 2.34
4209 4577 3.880047 ATTGGTTCATGTTGATGCTGG 57.120 42.857 0.00 0.00 0.00 4.85
4651 5035 2.425668 TCATTCACTTGCATGGCTCATG 59.574 45.455 9.94 9.94 43.91 3.07
4738 5133 1.838112 TCACATCTGTCCCAATTGCC 58.162 50.000 0.00 0.00 0.00 4.52
4753 5148 4.431809 CAATTGCCGCCTTAATGATTTCA 58.568 39.130 0.00 0.00 0.00 2.69
4846 5241 2.048127 GAGGTCCGTGTCCAGCAC 60.048 66.667 0.00 0.00 44.36 4.40
5089 5495 0.032615 AGTGTTCCTGGGGCAACAAA 60.033 50.000 1.46 0.00 34.33 2.83
5141 5547 3.795041 CCCCTCCTGCTGCTCCTG 61.795 72.222 0.00 0.00 0.00 3.86
5278 5684 1.906333 TGTAGGTGCGAGTCAGGCA 60.906 57.895 0.00 0.00 38.25 4.75
5354 5769 6.708054 GCAGCTCATGTACTATTAATTCCAGT 59.292 38.462 0.00 0.00 0.00 4.00
5443 5858 8.300286 GTGTCTATATGCAGTGTGACACTATAT 58.700 37.037 18.99 19.20 43.43 0.86
5444 5859 8.299570 TGTCTATATGCAGTGTGACACTATATG 58.700 37.037 22.27 12.75 43.43 1.78
5445 5860 8.300286 GTCTATATGCAGTGTGACACTATATGT 58.700 37.037 22.27 17.48 43.43 2.29
5455 5870 2.901249 ACACTATATGTCGGTGTTGCC 58.099 47.619 0.00 0.00 40.68 4.52
5543 5958 4.580868 TGCAAGTTGACCGGTTAATATCA 58.419 39.130 15.57 8.34 0.00 2.15
5648 6063 4.712476 AGTTTATCTCCATGATGAGGCAC 58.288 43.478 0.00 0.00 36.65 5.01
5660 6075 1.975407 GAGGCACCACTGCAGCATT 60.975 57.895 15.27 0.00 46.28 3.56
5713 6128 4.498894 AGATGGCATGACTCATTTGAGA 57.501 40.909 14.29 0.00 44.74 3.27
5735 6150 7.037586 TGAGAAAGCTAGAAGGGAAGGAAAATA 60.038 37.037 0.00 0.00 0.00 1.40
5851 6266 7.004555 TGATAGCTAGGAAACAAAACAGAGA 57.995 36.000 0.00 0.00 0.00 3.10
5905 6322 3.485394 TGAGAAGGTAGCATGCAACAAA 58.515 40.909 21.98 0.00 0.00 2.83
5945 6362 8.415950 ACAACATTCTATACTCTAGAGGATGG 57.584 38.462 25.40 22.57 37.33 3.51
6011 6428 9.585099 TGCAGTGGAATATCATTTTGAAATTAC 57.415 29.630 0.00 0.00 0.00 1.89
6012 6429 9.807649 GCAGTGGAATATCATTTTGAAATTACT 57.192 29.630 0.00 0.00 0.00 2.24
6016 6433 9.598517 TGGAATATCATTTTGAAATTACTTGGC 57.401 29.630 0.00 0.00 0.00 4.52
6017 6434 9.598517 GGAATATCATTTTGAAATTACTTGGCA 57.401 29.630 0.00 0.00 0.00 4.92
6020 6437 9.768662 ATATCATTTTGAAATTACTTGGCATCC 57.231 29.630 0.00 0.00 0.00 3.51
6021 6438 6.098679 TCATTTTGAAATTACTTGGCATCCG 58.901 36.000 0.00 0.00 0.00 4.18
6022 6439 5.461032 TTTTGAAATTACTTGGCATCCGT 57.539 34.783 0.00 0.00 0.00 4.69
6023 6440 6.576662 TTTTGAAATTACTTGGCATCCGTA 57.423 33.333 0.00 0.00 0.00 4.02
6024 6441 6.576662 TTTGAAATTACTTGGCATCCGTAA 57.423 33.333 6.90 6.90 0.00 3.18
6025 6442 5.811399 TGAAATTACTTGGCATCCGTAAG 57.189 39.130 9.39 0.00 0.00 2.34
6026 6443 4.095782 TGAAATTACTTGGCATCCGTAAGC 59.904 41.667 9.39 0.00 0.00 3.09
6027 6444 2.772077 TTACTTGGCATCCGTAAGCA 57.228 45.000 0.00 0.00 0.00 3.91
6028 6445 2.309528 TACTTGGCATCCGTAAGCAG 57.690 50.000 0.00 0.00 0.00 4.24
6029 6446 1.026718 ACTTGGCATCCGTAAGCAGC 61.027 55.000 0.00 0.00 0.00 5.25
6030 6447 1.002746 TTGGCATCCGTAAGCAGCA 60.003 52.632 0.00 0.00 0.00 4.41
6116 6533 8.954950 AACAGAGATAAACAGACCATTCATAG 57.045 34.615 0.00 0.00 0.00 2.23
6143 6560 5.949735 TCCTTCACTGTTTCAAGAACAAAC 58.050 37.500 0.00 0.00 34.79 2.93
6150 6567 7.001347 CACTGTTTCAAGAACAAACGAAAAAC 58.999 34.615 0.00 0.00 36.66 2.43
6173 6590 7.444629 ACTTGATATATCAACATCATGCACC 57.555 36.000 21.67 0.00 41.51 5.01
6186 6603 7.643569 ACATCATGCACCTAAAATATCACAA 57.356 32.000 0.00 0.00 0.00 3.33
6211 6628 4.574674 AAAATATCACAGCTGACCAGGA 57.425 40.909 23.35 9.77 0.00 3.86
6217 6634 1.078918 CAGCTGACCAGGAATGCGA 60.079 57.895 8.42 0.00 0.00 5.10
6224 6641 0.321653 ACCAGGAATGCGAGGACAAC 60.322 55.000 0.00 0.00 0.00 3.32
6231 6648 2.831685 ATGCGAGGACAACAACACTA 57.168 45.000 0.00 0.00 0.00 2.74
6249 6666 3.684788 CACTAGTTATGCGCCTCTGTTTT 59.315 43.478 4.18 0.00 0.00 2.43
6250 6667 3.684788 ACTAGTTATGCGCCTCTGTTTTG 59.315 43.478 4.18 0.00 0.00 2.44
6310 6727 9.956640 CTCATATAAGCATTTAGGAGGAATCTT 57.043 33.333 0.00 0.00 0.00 2.40
6347 6764 2.938451 TCGAGCATTGCTAAAGTGATGG 59.062 45.455 11.96 0.00 39.88 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.156008 CAGCGGCTAGTCCTTTGTAATTTT 59.844 41.667 0.26 0.00 0.00 1.82
1 2 3.689649 CAGCGGCTAGTCCTTTGTAATTT 59.310 43.478 0.26 0.00 0.00 1.82
4 5 1.674817 GCAGCGGCTAGTCCTTTGTAA 60.675 52.381 0.26 0.00 36.96 2.41
5 6 0.108329 GCAGCGGCTAGTCCTTTGTA 60.108 55.000 0.26 0.00 36.96 2.41
6 7 1.376037 GCAGCGGCTAGTCCTTTGT 60.376 57.895 0.26 0.00 36.96 2.83
7 8 3.490890 GCAGCGGCTAGTCCTTTG 58.509 61.111 0.26 0.00 36.96 2.77
17 18 5.858581 CCTAAAATATTAATGAAGCAGCGGC 59.141 40.000 0.00 0.00 41.61 6.53
18 19 7.202016 TCCTAAAATATTAATGAAGCAGCGG 57.798 36.000 0.00 0.00 0.00 5.52
19 20 9.121517 CAATCCTAAAATATTAATGAAGCAGCG 57.878 33.333 0.00 0.00 0.00 5.18
20 21 9.971922 ACAATCCTAAAATATTAATGAAGCAGC 57.028 29.630 0.00 0.00 0.00 5.25
35 36 9.974980 GTAAGAAACAATTGGACAATCCTAAAA 57.025 29.630 10.83 0.00 37.46 1.52
36 37 9.362151 AGTAAGAAACAATTGGACAATCCTAAA 57.638 29.630 10.83 0.00 37.46 1.85
37 38 8.934023 AGTAAGAAACAATTGGACAATCCTAA 57.066 30.769 10.83 0.00 37.46 2.69
38 39 9.667107 CTAGTAAGAAACAATTGGACAATCCTA 57.333 33.333 10.83 2.07 37.46 2.94
39 40 7.121315 GCTAGTAAGAAACAATTGGACAATCCT 59.879 37.037 10.83 0.97 37.46 3.24
40 41 7.094377 TGCTAGTAAGAAACAATTGGACAATCC 60.094 37.037 10.83 0.00 36.96 3.01
41 42 7.816640 TGCTAGTAAGAAACAATTGGACAATC 58.183 34.615 10.83 0.70 0.00 2.67
42 43 7.759489 TGCTAGTAAGAAACAATTGGACAAT 57.241 32.000 10.83 0.00 0.00 2.71
43 44 7.759489 ATGCTAGTAAGAAACAATTGGACAA 57.241 32.000 10.83 0.00 0.00 3.18
44 45 7.446931 TCAATGCTAGTAAGAAACAATTGGACA 59.553 33.333 10.83 0.00 0.00 4.02
45 46 7.816640 TCAATGCTAGTAAGAAACAATTGGAC 58.183 34.615 10.83 0.69 0.00 4.02
46 47 7.994425 TCAATGCTAGTAAGAAACAATTGGA 57.006 32.000 10.83 0.00 0.00 3.53
47 48 9.643693 ATTTCAATGCTAGTAAGAAACAATTGG 57.356 29.630 10.83 0.00 31.81 3.16
65 66 4.624024 GTGGTTGATCACTGCATTTCAATG 59.376 41.667 0.00 0.00 35.90 2.82
66 67 4.616604 CGTGGTTGATCACTGCATTTCAAT 60.617 41.667 0.00 0.00 35.63 2.57
67 68 3.304592 CGTGGTTGATCACTGCATTTCAA 60.305 43.478 0.00 0.00 35.63 2.69
68 69 2.226200 CGTGGTTGATCACTGCATTTCA 59.774 45.455 0.00 0.00 35.63 2.69
69 70 2.483877 TCGTGGTTGATCACTGCATTTC 59.516 45.455 0.00 0.00 35.63 2.17
70 71 2.485426 CTCGTGGTTGATCACTGCATTT 59.515 45.455 0.00 0.00 35.63 2.32
71 72 2.079158 CTCGTGGTTGATCACTGCATT 58.921 47.619 0.00 0.00 35.63 3.56
72 73 1.730501 CTCGTGGTTGATCACTGCAT 58.269 50.000 0.00 0.00 35.63 3.96
73 74 0.950555 GCTCGTGGTTGATCACTGCA 60.951 55.000 0.00 0.00 36.01 4.41
74 75 0.950555 TGCTCGTGGTTGATCACTGC 60.951 55.000 0.00 0.00 35.63 4.40
75 76 0.792640 GTGCTCGTGGTTGATCACTG 59.207 55.000 0.00 0.00 33.39 3.66
76 77 0.392706 TGTGCTCGTGGTTGATCACT 59.607 50.000 0.00 0.00 36.29 3.41
77 78 0.792640 CTGTGCTCGTGGTTGATCAC 59.207 55.000 0.00 0.00 35.96 3.06
78 79 0.392706 ACTGTGCTCGTGGTTGATCA 59.607 50.000 0.00 0.00 0.00 2.92
79 80 1.195448 CAACTGTGCTCGTGGTTGATC 59.805 52.381 11.12 0.00 40.74 2.92
80 81 1.202639 TCAACTGTGCTCGTGGTTGAT 60.203 47.619 13.65 0.00 41.68 2.57
81 82 0.176910 TCAACTGTGCTCGTGGTTGA 59.823 50.000 13.65 13.65 43.46 3.18
82 83 1.013596 TTCAACTGTGCTCGTGGTTG 58.986 50.000 10.62 10.62 39.95 3.77
83 84 1.400494 GTTTCAACTGTGCTCGTGGTT 59.600 47.619 0.00 0.00 0.00 3.67
84 85 1.014352 GTTTCAACTGTGCTCGTGGT 58.986 50.000 0.00 0.00 0.00 4.16
85 86 1.013596 TGTTTCAACTGTGCTCGTGG 58.986 50.000 0.00 0.00 0.00 4.94
86 87 2.602933 CCATGTTTCAACTGTGCTCGTG 60.603 50.000 0.00 0.00 0.00 4.35
87 88 1.603802 CCATGTTTCAACTGTGCTCGT 59.396 47.619 0.00 0.00 0.00 4.18
88 89 1.603802 ACCATGTTTCAACTGTGCTCG 59.396 47.619 0.00 0.00 0.00 5.03
89 90 3.550842 GGAACCATGTTTCAACTGTGCTC 60.551 47.826 5.29 0.00 0.00 4.26
90 91 2.362077 GGAACCATGTTTCAACTGTGCT 59.638 45.455 5.29 0.00 0.00 4.40
91 92 2.742774 GGAACCATGTTTCAACTGTGC 58.257 47.619 5.29 0.00 0.00 4.57
92 93 2.616376 TCGGAACCATGTTTCAACTGTG 59.384 45.455 5.29 0.00 0.00 3.66
93 94 2.878406 CTCGGAACCATGTTTCAACTGT 59.122 45.455 5.29 0.00 0.00 3.55
94 95 2.350772 GCTCGGAACCATGTTTCAACTG 60.351 50.000 5.29 0.00 0.00 3.16
95 96 1.880027 GCTCGGAACCATGTTTCAACT 59.120 47.619 5.29 0.00 0.00 3.16
96 97 1.606668 TGCTCGGAACCATGTTTCAAC 59.393 47.619 5.29 0.00 0.00 3.18
97 98 1.974265 TGCTCGGAACCATGTTTCAA 58.026 45.000 5.29 0.00 0.00 2.69
98 99 1.606668 GTTGCTCGGAACCATGTTTCA 59.393 47.619 5.29 0.00 0.00 2.69
99 100 1.399727 CGTTGCTCGGAACCATGTTTC 60.400 52.381 0.00 0.00 35.71 2.78
100 101 0.591170 CGTTGCTCGGAACCATGTTT 59.409 50.000 0.00 0.00 35.71 2.83
101 102 1.852067 GCGTTGCTCGGAACCATGTT 61.852 55.000 0.00 0.00 40.26 2.71
102 103 2.325082 GCGTTGCTCGGAACCATGT 61.325 57.895 0.00 0.00 40.26 3.21
103 104 2.244436 CTGCGTTGCTCGGAACCATG 62.244 60.000 4.36 0.00 39.75 3.66
104 105 2.031919 TGCGTTGCTCGGAACCAT 59.968 55.556 4.36 0.00 36.86 3.55
105 106 2.652382 TTCTGCGTTGCTCGGAACCA 62.652 55.000 4.36 0.00 39.75 3.67
106 107 1.901650 CTTCTGCGTTGCTCGGAACC 61.902 60.000 4.36 0.00 39.75 3.62
107 108 1.493311 CTTCTGCGTTGCTCGGAAC 59.507 57.895 4.36 0.00 39.75 3.62
108 109 1.667830 CCTTCTGCGTTGCTCGGAA 60.668 57.895 4.36 0.00 39.75 4.30
109 110 2.048222 CCTTCTGCGTTGCTCGGA 60.048 61.111 4.36 0.72 40.26 4.55
110 111 1.901650 GAACCTTCTGCGTTGCTCGG 61.902 60.000 4.36 0.00 40.26 4.63
111 112 1.221466 TGAACCTTCTGCGTTGCTCG 61.221 55.000 0.00 0.00 43.12 5.03
112 113 0.235926 GTGAACCTTCTGCGTTGCTC 59.764 55.000 0.00 0.00 0.00 4.26
113 114 0.179045 AGTGAACCTTCTGCGTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
114 115 0.040958 CAGTGAACCTTCTGCGTTGC 60.041 55.000 0.00 0.00 0.00 4.17
115 116 0.588252 CCAGTGAACCTTCTGCGTTG 59.412 55.000 0.00 0.00 0.00 4.10
116 117 0.468226 TCCAGTGAACCTTCTGCGTT 59.532 50.000 0.00 0.00 0.00 4.84
117 118 0.034059 CTCCAGTGAACCTTCTGCGT 59.966 55.000 0.00 0.00 0.00 5.24
118 119 0.671781 CCTCCAGTGAACCTTCTGCG 60.672 60.000 0.00 0.00 0.00 5.18
119 120 0.398318 ACCTCCAGTGAACCTTCTGC 59.602 55.000 0.00 0.00 0.00 4.26
130 131 7.126733 ACTATCTAACTACATTCACCTCCAGT 58.873 38.462 0.00 0.00 0.00 4.00
131 132 7.285629 TGACTATCTAACTACATTCACCTCCAG 59.714 40.741 0.00 0.00 0.00 3.86
132 133 7.123383 TGACTATCTAACTACATTCACCTCCA 58.877 38.462 0.00 0.00 0.00 3.86
133 134 7.584122 TGACTATCTAACTACATTCACCTCC 57.416 40.000 0.00 0.00 0.00 4.30
140 141 8.818057 GCGACAATTTGACTATCTAACTACATT 58.182 33.333 2.79 0.00 0.00 2.71
141 142 7.438459 GGCGACAATTTGACTATCTAACTACAT 59.562 37.037 2.79 0.00 0.00 2.29
142 143 6.755141 GGCGACAATTTGACTATCTAACTACA 59.245 38.462 2.79 0.00 0.00 2.74
143 144 6.074994 CGGCGACAATTTGACTATCTAACTAC 60.075 42.308 0.00 0.00 0.00 2.73
144 145 5.975344 CGGCGACAATTTGACTATCTAACTA 59.025 40.000 0.00 0.00 0.00 2.24
145 146 4.804139 CGGCGACAATTTGACTATCTAACT 59.196 41.667 0.00 0.00 0.00 2.24
146 147 4.565564 ACGGCGACAATTTGACTATCTAAC 59.434 41.667 16.62 0.00 0.00 2.34
147 148 4.751060 ACGGCGACAATTTGACTATCTAA 58.249 39.130 16.62 0.00 0.00 2.10
148 149 4.380841 ACGGCGACAATTTGACTATCTA 57.619 40.909 16.62 0.00 0.00 1.98
149 150 3.247006 ACGGCGACAATTTGACTATCT 57.753 42.857 16.62 0.00 0.00 1.98
150 151 5.432157 CATAACGGCGACAATTTGACTATC 58.568 41.667 16.62 0.00 0.00 2.08
151 152 4.260620 GCATAACGGCGACAATTTGACTAT 60.261 41.667 16.62 0.00 0.00 2.12
152 153 3.062909 GCATAACGGCGACAATTTGACTA 59.937 43.478 16.62 0.00 0.00 2.59
153 154 2.159572 GCATAACGGCGACAATTTGACT 60.160 45.455 16.62 0.00 0.00 3.41
154 155 2.173964 GCATAACGGCGACAATTTGAC 58.826 47.619 16.62 0.00 0.00 3.18
155 156 1.807142 TGCATAACGGCGACAATTTGA 59.193 42.857 16.62 0.00 36.28 2.69
156 157 2.176369 CTGCATAACGGCGACAATTTG 58.824 47.619 16.62 3.29 36.28 2.32
157 158 1.810151 ACTGCATAACGGCGACAATTT 59.190 42.857 16.62 0.00 36.28 1.82
158 159 1.448985 ACTGCATAACGGCGACAATT 58.551 45.000 16.62 0.00 36.28 2.32
159 160 1.130373 CAACTGCATAACGGCGACAAT 59.870 47.619 16.62 0.00 36.28 2.71
160 161 0.515127 CAACTGCATAACGGCGACAA 59.485 50.000 16.62 0.00 36.28 3.18
161 162 0.601576 ACAACTGCATAACGGCGACA 60.602 50.000 16.62 0.00 36.28 4.35
162 163 0.179225 CACAACTGCATAACGGCGAC 60.179 55.000 16.62 0.00 36.28 5.19
163 164 1.906994 GCACAACTGCATAACGGCGA 61.907 55.000 16.62 0.00 43.62 5.54
164 165 1.511887 GCACAACTGCATAACGGCG 60.512 57.895 4.80 4.80 43.62 6.46
165 166 1.062587 CTAGCACAACTGCATAACGGC 59.937 52.381 0.00 0.00 46.97 5.68
166 167 2.094258 CACTAGCACAACTGCATAACGG 59.906 50.000 0.00 0.00 46.97 4.44
167 168 2.736721 ACACTAGCACAACTGCATAACG 59.263 45.455 0.00 0.00 46.97 3.18
168 169 4.749245 AACACTAGCACAACTGCATAAC 57.251 40.909 0.00 0.00 46.97 1.89
169 170 5.353956 CCATAACACTAGCACAACTGCATAA 59.646 40.000 0.00 0.00 46.97 1.90
170 171 4.875536 CCATAACACTAGCACAACTGCATA 59.124 41.667 0.00 0.00 46.97 3.14
171 172 3.691118 CCATAACACTAGCACAACTGCAT 59.309 43.478 0.00 0.00 46.97 3.96
172 173 3.073678 CCATAACACTAGCACAACTGCA 58.926 45.455 0.00 0.00 46.97 4.41
173 174 3.334691 TCCATAACACTAGCACAACTGC 58.665 45.455 0.00 0.00 44.63 4.40
174 175 5.178061 TGATCCATAACACTAGCACAACTG 58.822 41.667 0.00 0.00 0.00 3.16
175 176 5.420725 TGATCCATAACACTAGCACAACT 57.579 39.130 0.00 0.00 0.00 3.16
176 177 5.504665 GCATGATCCATAACACTAGCACAAC 60.505 44.000 0.00 0.00 0.00 3.32
177 178 4.576053 GCATGATCCATAACACTAGCACAA 59.424 41.667 0.00 0.00 0.00 3.33
178 179 4.129380 GCATGATCCATAACACTAGCACA 58.871 43.478 0.00 0.00 0.00 4.57
179 180 3.185188 CGCATGATCCATAACACTAGCAC 59.815 47.826 0.00 0.00 0.00 4.40
180 181 3.392882 CGCATGATCCATAACACTAGCA 58.607 45.455 0.00 0.00 0.00 3.49
181 182 2.738846 CCGCATGATCCATAACACTAGC 59.261 50.000 0.00 0.00 0.00 3.42
182 183 3.244215 ACCCGCATGATCCATAACACTAG 60.244 47.826 0.00 0.00 0.00 2.57
183 184 2.703536 ACCCGCATGATCCATAACACTA 59.296 45.455 0.00 0.00 0.00 2.74
184 185 1.490490 ACCCGCATGATCCATAACACT 59.510 47.619 0.00 0.00 0.00 3.55
185 186 1.603802 CACCCGCATGATCCATAACAC 59.396 52.381 0.00 0.00 0.00 3.32
186 187 1.211703 ACACCCGCATGATCCATAACA 59.788 47.619 0.00 0.00 0.00 2.41
187 188 1.967319 ACACCCGCATGATCCATAAC 58.033 50.000 0.00 0.00 0.00 1.89
188 189 4.365514 AATACACCCGCATGATCCATAA 57.634 40.909 0.00 0.00 0.00 1.90
189 190 5.491323 TTAATACACCCGCATGATCCATA 57.509 39.130 0.00 0.00 0.00 2.74
190 191 2.957402 AATACACCCGCATGATCCAT 57.043 45.000 0.00 0.00 0.00 3.41
191 192 3.847671 TTAATACACCCGCATGATCCA 57.152 42.857 0.00 0.00 0.00 3.41
192 193 5.705609 AAATTAATACACCCGCATGATCC 57.294 39.130 0.00 0.00 0.00 3.36
193 194 6.417635 CACAAAATTAATACACCCGCATGATC 59.582 38.462 0.00 0.00 0.00 2.92
194 195 6.127479 ACACAAAATTAATACACCCGCATGAT 60.127 34.615 0.00 0.00 0.00 2.45
195 196 5.184096 ACACAAAATTAATACACCCGCATGA 59.816 36.000 0.00 0.00 0.00 3.07
196 197 5.406649 ACACAAAATTAATACACCCGCATG 58.593 37.500 0.00 0.00 0.00 4.06
197 198 5.652994 ACACAAAATTAATACACCCGCAT 57.347 34.783 0.00 0.00 0.00 4.73
198 199 6.570672 TTACACAAAATTAATACACCCGCA 57.429 33.333 0.00 0.00 0.00 5.69
199 200 6.020201 GCATTACACAAAATTAATACACCCGC 60.020 38.462 0.00 0.00 0.00 6.13
200 201 6.195613 CGCATTACACAAAATTAATACACCCG 59.804 38.462 0.00 0.00 0.00 5.28
201 202 7.251994 TCGCATTACACAAAATTAATACACCC 58.748 34.615 0.00 0.00 0.00 4.61
202 203 8.676454 TTCGCATTACACAAAATTAATACACC 57.324 30.769 0.00 0.00 0.00 4.16
203 204 8.311120 GCTTCGCATTACACAAAATTAATACAC 58.689 33.333 0.00 0.00 0.00 2.90
204 205 8.023706 TGCTTCGCATTACACAAAATTAATACA 58.976 29.630 0.00 0.00 31.71 2.29
205 206 8.311120 GTGCTTCGCATTACACAAAATTAATAC 58.689 33.333 0.00 0.00 41.91 1.89
206 207 8.240682 AGTGCTTCGCATTACACAAAATTAATA 58.759 29.630 0.00 0.00 41.91 0.98
207 208 7.090173 AGTGCTTCGCATTACACAAAATTAAT 58.910 30.769 0.00 0.00 41.91 1.40
208 209 6.442952 AGTGCTTCGCATTACACAAAATTAA 58.557 32.000 0.00 0.00 41.91 1.40
209 210 6.007936 AGTGCTTCGCATTACACAAAATTA 57.992 33.333 0.00 0.00 41.91 1.40
210 211 4.870363 AGTGCTTCGCATTACACAAAATT 58.130 34.783 0.00 0.00 41.91 1.82
211 212 4.503741 AGTGCTTCGCATTACACAAAAT 57.496 36.364 0.00 0.00 41.91 1.82
212 213 3.980646 AGTGCTTCGCATTACACAAAA 57.019 38.095 0.00 0.00 41.91 2.44
213 214 3.980646 AAGTGCTTCGCATTACACAAA 57.019 38.095 0.00 0.00 41.91 2.83
214 215 5.049060 ACATTAAGTGCTTCGCATTACACAA 60.049 36.000 0.00 0.00 41.91 3.33
215 216 4.454161 ACATTAAGTGCTTCGCATTACACA 59.546 37.500 0.00 0.00 41.91 3.72
216 217 4.969816 ACATTAAGTGCTTCGCATTACAC 58.030 39.130 0.00 0.00 41.91 2.90
217 218 6.147985 TGTTACATTAAGTGCTTCGCATTACA 59.852 34.615 0.00 0.00 41.91 2.41
218 219 6.464834 GTGTTACATTAAGTGCTTCGCATTAC 59.535 38.462 0.00 0.00 41.91 1.89
219 220 6.402766 GGTGTTACATTAAGTGCTTCGCATTA 60.403 38.462 0.00 0.00 41.91 1.90
220 221 5.390613 GTGTTACATTAAGTGCTTCGCATT 58.609 37.500 0.00 0.00 41.91 3.56
221 222 4.142687 GGTGTTACATTAAGTGCTTCGCAT 60.143 41.667 0.00 0.00 41.91 4.73
222 223 3.187637 GGTGTTACATTAAGTGCTTCGCA 59.812 43.478 0.00 0.00 35.60 5.10
223 224 3.723835 CGGTGTTACATTAAGTGCTTCGC 60.724 47.826 0.00 0.00 0.00 4.70
224 225 3.676172 TCGGTGTTACATTAAGTGCTTCG 59.324 43.478 0.00 0.00 0.00 3.79
225 226 5.560148 CATCGGTGTTACATTAAGTGCTTC 58.440 41.667 0.00 0.00 0.00 3.86
226 227 4.142687 GCATCGGTGTTACATTAAGTGCTT 60.143 41.667 0.00 0.00 0.00 3.91
227 228 3.374058 GCATCGGTGTTACATTAAGTGCT 59.626 43.478 0.00 0.00 0.00 4.40
228 229 3.126171 TGCATCGGTGTTACATTAAGTGC 59.874 43.478 0.00 0.00 0.00 4.40
229 230 4.436852 GGTGCATCGGTGTTACATTAAGTG 60.437 45.833 0.00 0.00 0.00 3.16
230 231 3.687698 GGTGCATCGGTGTTACATTAAGT 59.312 43.478 0.00 0.00 0.00 2.24
231 232 3.242284 CGGTGCATCGGTGTTACATTAAG 60.242 47.826 12.68 0.00 0.00 1.85
232 233 2.673862 CGGTGCATCGGTGTTACATTAA 59.326 45.455 12.68 0.00 0.00 1.40
233 234 2.272678 CGGTGCATCGGTGTTACATTA 58.727 47.619 12.68 0.00 0.00 1.90
234 235 1.083489 CGGTGCATCGGTGTTACATT 58.917 50.000 12.68 0.00 0.00 2.71
235 236 0.742990 CCGGTGCATCGGTGTTACAT 60.743 55.000 30.46 0.00 44.60 2.29
236 237 1.374885 CCGGTGCATCGGTGTTACA 60.375 57.895 30.46 0.00 44.60 2.41
237 238 3.481661 CCGGTGCATCGGTGTTAC 58.518 61.111 30.46 0.00 44.60 2.50
244 245 0.738975 TCTAGTTCTCCGGTGCATCG 59.261 55.000 13.72 13.72 0.00 3.84
245 246 1.751924 AGTCTAGTTCTCCGGTGCATC 59.248 52.381 0.00 0.00 0.00 3.91
246 247 1.853963 AGTCTAGTTCTCCGGTGCAT 58.146 50.000 0.00 0.00 0.00 3.96
247 248 1.629043 AAGTCTAGTTCTCCGGTGCA 58.371 50.000 0.00 0.00 0.00 4.57
248 249 2.737252 CAAAAGTCTAGTTCTCCGGTGC 59.263 50.000 0.00 0.00 0.00 5.01
249 250 2.737252 GCAAAAGTCTAGTTCTCCGGTG 59.263 50.000 0.00 0.00 0.00 4.94
250 251 2.633481 AGCAAAAGTCTAGTTCTCCGGT 59.367 45.455 0.00 0.00 0.00 5.28
251 252 3.320673 AGCAAAAGTCTAGTTCTCCGG 57.679 47.619 0.00 0.00 0.00 5.14
252 253 4.082136 ACCTAGCAAAAGTCTAGTTCTCCG 60.082 45.833 0.00 0.00 33.43 4.63
253 254 5.186215 AGACCTAGCAAAAGTCTAGTTCTCC 59.814 44.000 0.00 0.00 39.06 3.71
254 255 6.275494 AGACCTAGCAAAAGTCTAGTTCTC 57.725 41.667 0.00 0.00 39.06 2.87
255 256 6.459923 CAAGACCTAGCAAAAGTCTAGTTCT 58.540 40.000 0.00 0.00 39.92 3.01
256 257 5.120986 GCAAGACCTAGCAAAAGTCTAGTTC 59.879 44.000 0.00 0.00 39.92 3.01
257 258 4.998033 GCAAGACCTAGCAAAAGTCTAGTT 59.002 41.667 0.00 0.00 39.92 2.24
258 259 4.040461 TGCAAGACCTAGCAAAAGTCTAGT 59.960 41.667 0.00 0.00 39.92 2.57
259 260 4.569943 TGCAAGACCTAGCAAAAGTCTAG 58.430 43.478 0.00 0.00 39.92 2.43
260 261 4.617253 TGCAAGACCTAGCAAAAGTCTA 57.383 40.909 0.00 0.00 39.92 2.59
261 262 3.492102 TGCAAGACCTAGCAAAAGTCT 57.508 42.857 0.00 0.00 42.58 3.24
268 269 1.824852 TCGATCTTGCAAGACCTAGCA 59.175 47.619 30.66 7.79 37.98 3.49
269 270 2.586258 TCGATCTTGCAAGACCTAGC 57.414 50.000 30.66 15.98 37.98 3.42
270 271 3.452474 CCTTCGATCTTGCAAGACCTAG 58.548 50.000 30.66 22.20 37.98 3.02
271 272 2.418746 GCCTTCGATCTTGCAAGACCTA 60.419 50.000 30.66 11.53 37.98 3.08
272 273 1.677217 GCCTTCGATCTTGCAAGACCT 60.677 52.381 30.66 16.77 37.98 3.85
273 274 0.729690 GCCTTCGATCTTGCAAGACC 59.270 55.000 30.66 21.46 37.98 3.85
274 275 1.731720 AGCCTTCGATCTTGCAAGAC 58.268 50.000 30.66 21.52 37.98 3.01
275 276 3.386078 AGATAGCCTTCGATCTTGCAAGA 59.614 43.478 30.23 30.23 39.78 3.02
276 277 3.493877 CAGATAGCCTTCGATCTTGCAAG 59.506 47.826 20.81 20.81 33.25 4.01
277 278 3.132824 TCAGATAGCCTTCGATCTTGCAA 59.867 43.478 0.00 0.00 33.25 4.08
278 279 2.695147 TCAGATAGCCTTCGATCTTGCA 59.305 45.455 0.00 0.00 33.25 4.08
279 280 3.377346 TCAGATAGCCTTCGATCTTGC 57.623 47.619 0.00 0.00 33.25 4.01
280 281 6.346439 CGAAAATCAGATAGCCTTCGATCTTG 60.346 42.308 9.60 0.00 38.27 3.02
281 282 5.694006 CGAAAATCAGATAGCCTTCGATCTT 59.306 40.000 9.60 0.00 38.27 2.40
282 283 5.221342 ACGAAAATCAGATAGCCTTCGATCT 60.221 40.000 17.28 0.00 39.08 2.75
283 284 4.985409 ACGAAAATCAGATAGCCTTCGATC 59.015 41.667 17.28 0.00 39.08 3.69
284 285 4.950050 ACGAAAATCAGATAGCCTTCGAT 58.050 39.130 17.28 5.63 39.08 3.59
285 286 4.386867 ACGAAAATCAGATAGCCTTCGA 57.613 40.909 17.28 0.00 39.08 3.71
286 287 6.255887 ACTTTACGAAAATCAGATAGCCTTCG 59.744 38.462 12.11 12.11 40.96 3.79
287 288 7.541122 ACTTTACGAAAATCAGATAGCCTTC 57.459 36.000 0.00 0.00 0.00 3.46
288 289 9.046296 CATACTTTACGAAAATCAGATAGCCTT 57.954 33.333 0.00 0.00 0.00 4.35
289 290 8.421784 TCATACTTTACGAAAATCAGATAGCCT 58.578 33.333 0.00 0.00 0.00 4.58
290 291 8.589335 TCATACTTTACGAAAATCAGATAGCC 57.411 34.615 0.00 0.00 0.00 3.93
329 330 9.586732 TGCAATGGGTATATTTTTAAGATAGCT 57.413 29.630 0.00 0.00 0.00 3.32
338 339 8.203485 CCTGTATGTTGCAATGGGTATATTTTT 58.797 33.333 0.59 0.00 0.00 1.94
339 340 7.344352 ACCTGTATGTTGCAATGGGTATATTTT 59.656 33.333 0.59 0.00 0.00 1.82
340 341 6.838612 ACCTGTATGTTGCAATGGGTATATTT 59.161 34.615 0.59 0.00 0.00 1.40
341 342 6.372931 ACCTGTATGTTGCAATGGGTATATT 58.627 36.000 0.59 0.00 0.00 1.28
342 343 5.952387 ACCTGTATGTTGCAATGGGTATAT 58.048 37.500 0.59 0.00 0.00 0.86
343 344 5.381184 ACCTGTATGTTGCAATGGGTATA 57.619 39.130 0.59 0.00 0.00 1.47
344 345 4.249638 ACCTGTATGTTGCAATGGGTAT 57.750 40.909 0.59 0.00 0.00 2.73
345 346 3.730215 ACCTGTATGTTGCAATGGGTA 57.270 42.857 0.59 0.00 0.00 3.69
346 347 2.603075 ACCTGTATGTTGCAATGGGT 57.397 45.000 0.59 2.46 0.00 4.51
347 348 3.620488 AGTACCTGTATGTTGCAATGGG 58.380 45.455 0.59 1.82 0.00 4.00
348 349 5.645929 TGTAAGTACCTGTATGTTGCAATGG 59.354 40.000 0.59 1.44 0.00 3.16
349 350 6.735678 TGTAAGTACCTGTATGTTGCAATG 57.264 37.500 0.59 0.00 0.00 2.82
350 351 7.447238 ACTTTGTAAGTACCTGTATGTTGCAAT 59.553 33.333 0.59 0.00 40.69 3.56
351 352 6.768861 ACTTTGTAAGTACCTGTATGTTGCAA 59.231 34.615 0.00 0.00 40.69 4.08
352 353 6.292923 ACTTTGTAAGTACCTGTATGTTGCA 58.707 36.000 0.00 0.00 40.69 4.08
353 354 6.796705 ACTTTGTAAGTACCTGTATGTTGC 57.203 37.500 0.00 0.00 40.69 4.17
354 355 9.485206 ACTTACTTTGTAAGTACCTGTATGTTG 57.515 33.333 18.06 0.00 43.30 3.33
355 356 9.702494 GACTTACTTTGTAAGTACCTGTATGTT 57.298 33.333 19.11 0.00 43.30 2.71
356 357 8.863086 TGACTTACTTTGTAAGTACCTGTATGT 58.137 33.333 19.11 0.00 43.30 2.29
357 358 9.701098 TTGACTTACTTTGTAAGTACCTGTATG 57.299 33.333 19.11 0.00 43.30 2.39
370 371 9.295825 TCACCATCAATTATTGACTTACTTTGT 57.704 29.630 10.02 0.00 43.48 2.83
385 386 9.730705 ATCGTCTGAATTATATCACCATCAATT 57.269 29.630 0.00 0.00 0.00 2.32
386 387 9.730705 AATCGTCTGAATTATATCACCATCAAT 57.269 29.630 0.00 0.00 0.00 2.57
387 388 9.559732 AAATCGTCTGAATTATATCACCATCAA 57.440 29.630 0.00 0.00 0.00 2.57
388 389 9.559732 AAAATCGTCTGAATTATATCACCATCA 57.440 29.630 0.00 0.00 0.00 3.07
400 401 8.573035 TGCTTTTACCTAAAAATCGTCTGAATT 58.427 29.630 0.00 0.00 36.49 2.17
401 402 8.106247 TGCTTTTACCTAAAAATCGTCTGAAT 57.894 30.769 0.00 0.00 36.49 2.57
402 403 7.227910 ACTGCTTTTACCTAAAAATCGTCTGAA 59.772 33.333 0.00 0.00 36.49 3.02
403 404 6.708949 ACTGCTTTTACCTAAAAATCGTCTGA 59.291 34.615 0.00 0.00 36.49 3.27
404 405 6.797033 CACTGCTTTTACCTAAAAATCGTCTG 59.203 38.462 0.00 0.00 36.49 3.51
405 406 6.708949 TCACTGCTTTTACCTAAAAATCGTCT 59.291 34.615 0.00 0.00 36.49 4.18
406 407 6.894828 TCACTGCTTTTACCTAAAAATCGTC 58.105 36.000 0.00 0.00 36.49 4.20
407 408 6.870971 TCACTGCTTTTACCTAAAAATCGT 57.129 33.333 0.00 0.00 36.49 3.73
408 409 6.801862 CCTTCACTGCTTTTACCTAAAAATCG 59.198 38.462 0.00 0.00 36.49 3.34
409 410 7.039993 TCCCTTCACTGCTTTTACCTAAAAATC 60.040 37.037 0.00 0.00 36.49 2.17
410 411 6.780522 TCCCTTCACTGCTTTTACCTAAAAAT 59.219 34.615 0.00 0.00 36.49 1.82
411 412 6.130569 TCCCTTCACTGCTTTTACCTAAAAA 58.869 36.000 0.00 0.00 35.04 1.94
412 413 5.697067 TCCCTTCACTGCTTTTACCTAAAA 58.303 37.500 0.00 0.00 34.35 1.52
413 414 5.313280 TCCCTTCACTGCTTTTACCTAAA 57.687 39.130 0.00 0.00 0.00 1.85
414 415 4.263331 CCTCCCTTCACTGCTTTTACCTAA 60.263 45.833 0.00 0.00 0.00 2.69
415 416 3.263425 CCTCCCTTCACTGCTTTTACCTA 59.737 47.826 0.00 0.00 0.00 3.08
416 417 2.040412 CCTCCCTTCACTGCTTTTACCT 59.960 50.000 0.00 0.00 0.00 3.08
417 418 2.039879 TCCTCCCTTCACTGCTTTTACC 59.960 50.000 0.00 0.00 0.00 2.85
418 419 3.418684 TCCTCCCTTCACTGCTTTTAC 57.581 47.619 0.00 0.00 0.00 2.01
419 420 4.141251 ACTTTCCTCCCTTCACTGCTTTTA 60.141 41.667 0.00 0.00 0.00 1.52
420 421 3.225940 CTTTCCTCCCTTCACTGCTTTT 58.774 45.455 0.00 0.00 0.00 2.27
421 422 2.175715 ACTTTCCTCCCTTCACTGCTTT 59.824 45.455 0.00 0.00 0.00 3.51
422 423 1.777272 ACTTTCCTCCCTTCACTGCTT 59.223 47.619 0.00 0.00 0.00 3.91
423 424 1.439543 ACTTTCCTCCCTTCACTGCT 58.560 50.000 0.00 0.00 0.00 4.24
424 425 3.274288 CATACTTTCCTCCCTTCACTGC 58.726 50.000 0.00 0.00 0.00 4.40
425 426 4.559862 ACATACTTTCCTCCCTTCACTG 57.440 45.455 0.00 0.00 0.00 3.66
426 427 6.272558 ACTTTACATACTTTCCTCCCTTCACT 59.727 38.462 0.00 0.00 0.00 3.41
427 428 6.473758 ACTTTACATACTTTCCTCCCTTCAC 58.526 40.000 0.00 0.00 0.00 3.18
428 429 6.697641 ACTTTACATACTTTCCTCCCTTCA 57.302 37.500 0.00 0.00 0.00 3.02
429 430 6.374613 CCAACTTTACATACTTTCCTCCCTTC 59.625 42.308 0.00 0.00 0.00 3.46
430 431 6.045106 TCCAACTTTACATACTTTCCTCCCTT 59.955 38.462 0.00 0.00 0.00 3.95
431 432 5.550403 TCCAACTTTACATACTTTCCTCCCT 59.450 40.000 0.00 0.00 0.00 4.20
432 433 5.812286 TCCAACTTTACATACTTTCCTCCC 58.188 41.667 0.00 0.00 0.00 4.30
433 434 7.110155 TCATCCAACTTTACATACTTTCCTCC 58.890 38.462 0.00 0.00 0.00 4.30
434 435 7.824779 ACTCATCCAACTTTACATACTTTCCTC 59.175 37.037 0.00 0.00 0.00 3.71
435 436 7.607991 CACTCATCCAACTTTACATACTTTCCT 59.392 37.037 0.00 0.00 0.00 3.36
436 437 7.606456 TCACTCATCCAACTTTACATACTTTCC 59.394 37.037 0.00 0.00 0.00 3.13
437 438 8.547967 TCACTCATCCAACTTTACATACTTTC 57.452 34.615 0.00 0.00 0.00 2.62
438 439 8.784043 GTTCACTCATCCAACTTTACATACTTT 58.216 33.333 0.00 0.00 0.00 2.66
439 440 7.390718 GGTTCACTCATCCAACTTTACATACTT 59.609 37.037 0.00 0.00 0.00 2.24
440 441 6.879458 GGTTCACTCATCCAACTTTACATACT 59.121 38.462 0.00 0.00 0.00 2.12
441 442 6.653320 TGGTTCACTCATCCAACTTTACATAC 59.347 38.462 0.00 0.00 0.00 2.39
442 443 6.774673 TGGTTCACTCATCCAACTTTACATA 58.225 36.000 0.00 0.00 0.00 2.29
443 444 5.630121 TGGTTCACTCATCCAACTTTACAT 58.370 37.500 0.00 0.00 0.00 2.29
444 445 5.042463 TGGTTCACTCATCCAACTTTACA 57.958 39.130 0.00 0.00 0.00 2.41
445 446 7.336931 ACATATGGTTCACTCATCCAACTTTAC 59.663 37.037 7.80 0.00 34.80 2.01
446 447 7.402054 ACATATGGTTCACTCATCCAACTTTA 58.598 34.615 7.80 0.00 34.80 1.85
447 448 6.248433 ACATATGGTTCACTCATCCAACTTT 58.752 36.000 7.80 0.00 34.80 2.66
448 449 5.819991 ACATATGGTTCACTCATCCAACTT 58.180 37.500 7.80 0.00 34.80 2.66
449 450 5.190528 AGACATATGGTTCACTCATCCAACT 59.809 40.000 7.80 0.00 34.80 3.16
450 451 5.431765 AGACATATGGTTCACTCATCCAAC 58.568 41.667 7.80 0.00 34.80 3.77
451 452 5.698741 AGACATATGGTTCACTCATCCAA 57.301 39.130 7.80 0.00 34.80 3.53
452 453 5.698741 AAGACATATGGTTCACTCATCCA 57.301 39.130 7.80 0.00 35.64 3.41
453 454 8.506168 TTTAAAGACATATGGTTCACTCATCC 57.494 34.615 7.80 0.00 0.00 3.51
454 455 9.167311 ACTTTAAAGACATATGGTTCACTCATC 57.833 33.333 21.92 0.00 0.00 2.92
593 599 5.779806 ACATACGAAGCACAATGAGTAAC 57.220 39.130 0.00 0.00 0.00 2.50
805 1122 2.735772 GGGCCTGGAATCTCGCTCA 61.736 63.158 0.84 0.00 0.00 4.26
836 1153 1.569479 GCTTCGTGTCTTGGGTCAGC 61.569 60.000 0.00 0.00 0.00 4.26
863 1180 3.607741 GGGAGTAAAGGGTAGAGTTTGC 58.392 50.000 0.00 0.00 0.00 3.68
907 1224 2.760385 GGTCGGGGTGGAGGAGAG 60.760 72.222 0.00 0.00 0.00 3.20
949 1266 0.545787 ACGGTAGATTGGTGGGGTGA 60.546 55.000 0.00 0.00 0.00 4.02
1182 1499 1.427819 CATACCAAACTTCCGCGGC 59.572 57.895 23.51 0.00 0.00 6.53
1204 1521 3.115390 AGCTCATCCAAAGTTAGCCCTA 58.885 45.455 0.00 0.00 33.63 3.53
1206 1523 2.426842 AGCTCATCCAAAGTTAGCCC 57.573 50.000 0.00 0.00 33.63 5.19
1211 1528 3.503748 GCACACTAAGCTCATCCAAAGTT 59.496 43.478 0.00 0.00 0.00 2.66
1213 1530 2.094894 CGCACACTAAGCTCATCCAAAG 59.905 50.000 0.00 0.00 0.00 2.77
1215 1532 1.275010 TCGCACACTAAGCTCATCCAA 59.725 47.619 0.00 0.00 0.00 3.53
1262 1579 1.003718 CGGAAACAGGGGACAGACC 60.004 63.158 0.00 0.00 38.08 3.85
1264 1581 1.415672 AAGCGGAAACAGGGGACAGA 61.416 55.000 0.00 0.00 0.00 3.41
1290 1618 4.699522 AGCGCCTCCGAAACCACC 62.700 66.667 2.29 0.00 36.29 4.61
1361 1690 0.517316 AACAGCAGAATTCCGCGAAC 59.483 50.000 8.23 0.00 0.00 3.95
1366 1695 2.096069 CACACAGAACAGCAGAATTCCG 60.096 50.000 0.65 0.00 0.00 4.30
1427 1756 2.300437 ACTGCTGTCCTCAGTTTCTACC 59.700 50.000 0.00 0.00 41.61 3.18
2141 2471 7.459795 TCCAATATGTTAAGTGCACATCAAA 57.540 32.000 21.04 4.35 36.28 2.69
2182 2513 1.759445 AGAGCACAGCACACCCTATAG 59.241 52.381 0.00 0.00 0.00 1.31
2207 2538 4.925068 AGAAGAAGTCAAATGTGTGCAAC 58.075 39.130 0.00 0.00 37.35 4.17
2450 2785 6.534079 GGAGTATTAAATCTACAAGTGTGCGT 59.466 38.462 0.00 0.00 0.00 5.24
2451 2786 6.018994 GGGAGTATTAAATCTACAAGTGTGCG 60.019 42.308 0.00 0.00 0.00 5.34
2915 3254 7.504818 GTTCGTAGTAGTCAACAAAACCATAC 58.495 38.462 0.00 0.00 0.00 2.39
3068 3407 5.408604 ACTGCAATAACGTTCTTCAGTAAGG 59.591 40.000 19.75 3.04 32.29 2.69
3082 3421 2.068519 GCTGCCCAAAACTGCAATAAC 58.931 47.619 0.00 0.00 32.76 1.89
3256 3595 4.019174 CAGGGCTAAGATCACCAACAAAT 58.981 43.478 0.00 0.00 0.00 2.32
3344 3683 9.905713 AGAAAGTAATGAATATAAGGAAGCACA 57.094 29.630 0.00 0.00 0.00 4.57
3624 3985 3.071479 GGAACGGACAAAGCACAGATTA 58.929 45.455 0.00 0.00 0.00 1.75
3646 4007 9.396938 CAAATAAATCAATTTCAGCAAAAACCC 57.603 29.630 0.00 0.00 0.00 4.11
3749 4110 2.768253 TCGAAATCCTCACTGCACAT 57.232 45.000 0.00 0.00 0.00 3.21
3984 4346 9.594478 TTTACATCAGCTATACTTTTCGAATCA 57.406 29.630 0.00 0.00 0.00 2.57
4209 4577 7.553044 AGTGGGTATGCTTTACTAATCAAACTC 59.447 37.037 0.00 0.00 0.00 3.01
4708 5103 6.844829 TGGGACAGATGTGATAATTCATCAT 58.155 36.000 0.00 0.00 45.37 2.45
4738 5133 6.732154 AGAACATCATGAAATCATTAAGGCG 58.268 36.000 0.00 0.00 33.61 5.52
4753 5148 8.768397 TGAGTAACCTGGTATTAAGAACATCAT 58.232 33.333 0.00 0.00 0.00 2.45
4846 5241 0.936600 CAAAACCAAAGCCTTTGCCG 59.063 50.000 11.76 1.98 39.31 5.69
5167 5573 4.768508 CGCAATAGCACGTTGATACGCC 62.769 54.545 0.00 0.00 42.47 5.68
5278 5684 5.670792 TCTGGAAAGTACCATCGTACATT 57.329 39.130 3.38 0.00 46.25 2.71
5354 5769 0.178891 AAGGTGAGCTCCCTCCAAGA 60.179 55.000 20.12 0.00 37.29 3.02
5413 5828 3.442273 TCACACTGCATATAGACACGACA 59.558 43.478 0.00 0.00 0.00 4.35
5454 5869 2.111043 ACCAACACAGCCAGACGG 59.889 61.111 0.00 0.00 0.00 4.79
5455 5870 1.095228 AACACCAACACAGCCAGACG 61.095 55.000 0.00 0.00 0.00 4.18
5456 5871 0.381801 CAACACCAACACAGCCAGAC 59.618 55.000 0.00 0.00 0.00 3.51
5457 5872 1.383456 GCAACACCAACACAGCCAGA 61.383 55.000 0.00 0.00 0.00 3.86
5458 5873 1.066257 GCAACACCAACACAGCCAG 59.934 57.895 0.00 0.00 0.00 4.85
5459 5874 2.422231 GGCAACACCAACACAGCCA 61.422 57.895 0.00 0.00 41.63 4.75
5460 5875 2.417097 GGCAACACCAACACAGCC 59.583 61.111 0.00 0.00 38.86 4.85
5461 5876 2.026014 CGGCAACACCAACACAGC 59.974 61.111 0.00 0.00 39.03 4.40
5462 5877 1.095228 AGACGGCAACACCAACACAG 61.095 55.000 0.00 0.00 39.03 3.66
5463 5878 1.078072 AGACGGCAACACCAACACA 60.078 52.632 0.00 0.00 39.03 3.72
5464 5879 1.355210 CAGACGGCAACACCAACAC 59.645 57.895 0.00 0.00 39.03 3.32
5648 6063 1.170442 TGTGATCAATGCTGCAGTGG 58.830 50.000 27.09 11.01 29.97 4.00
5660 6075 7.041635 TGATTTTTCTTTCAGCTTGTGATCA 57.958 32.000 0.00 0.00 34.17 2.92
5697 6112 4.698583 AGCTTTCTCAAATGAGTCATGC 57.301 40.909 6.34 3.05 42.60 4.06
5801 6216 5.720202 TCAACTATTGTGTGGTAGTGCTAG 58.280 41.667 0.00 0.00 31.83 3.42
6003 6420 4.095782 GCTTACGGATGCCAAGTAATTTCA 59.904 41.667 0.00 0.00 31.07 2.69
6004 6421 4.095782 TGCTTACGGATGCCAAGTAATTTC 59.904 41.667 2.62 0.00 31.07 2.17
6005 6422 4.013728 TGCTTACGGATGCCAAGTAATTT 58.986 39.130 2.62 0.00 31.07 1.82
6006 6423 3.616219 TGCTTACGGATGCCAAGTAATT 58.384 40.909 2.62 0.00 31.07 1.40
6008 6425 2.627945 CTGCTTACGGATGCCAAGTAA 58.372 47.619 2.62 0.00 0.00 2.24
6009 6426 1.742411 GCTGCTTACGGATGCCAAGTA 60.742 52.381 2.62 0.00 0.00 2.24
6010 6427 1.026718 GCTGCTTACGGATGCCAAGT 61.027 55.000 2.62 0.00 0.00 3.16
6011 6428 1.026182 TGCTGCTTACGGATGCCAAG 61.026 55.000 2.62 0.00 0.00 3.61
6012 6429 0.607762 TTGCTGCTTACGGATGCCAA 60.608 50.000 2.62 0.00 0.00 4.52
6013 6430 0.607762 TTTGCTGCTTACGGATGCCA 60.608 50.000 2.62 0.00 0.00 4.92
6014 6431 0.525761 TTTTGCTGCTTACGGATGCC 59.474 50.000 2.62 0.00 0.00 4.40
6015 6432 2.346099 TTTTTGCTGCTTACGGATGC 57.654 45.000 0.00 0.00 0.00 3.91
6105 6522 5.355350 CAGTGAAGGAAACCTATGAATGGTC 59.645 44.000 0.00 0.00 36.69 4.02
6116 6533 5.105917 TGTTCTTGAAACAGTGAAGGAAACC 60.106 40.000 0.00 0.00 0.00 3.27
6150 6567 7.683437 AGGTGCATGATGTTGATATATCAAG 57.317 36.000 25.14 14.81 46.44 3.02
6186 6603 5.882557 CCTGGTCAGCTGTGATATTTTTAGT 59.117 40.000 14.67 0.00 34.36 2.24
6201 6618 1.817099 CCTCGCATTCCTGGTCAGC 60.817 63.158 0.00 0.00 0.00 4.26
6211 6628 1.967319 AGTGTTGTTGTCCTCGCATT 58.033 45.000 0.00 0.00 0.00 3.56
6217 6634 3.994392 CGCATAACTAGTGTTGTTGTCCT 59.006 43.478 0.00 0.00 37.59 3.85
6224 6641 2.604914 CAGAGGCGCATAACTAGTGTTG 59.395 50.000 10.83 0.00 37.59 3.33
6231 6648 2.778299 TCAAAACAGAGGCGCATAACT 58.222 42.857 10.83 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.