Multiple sequence alignment - TraesCS2D01G176400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G176400 chr2D 100.000 7419 0 0 1 7419 119831545 119838963 0.000000e+00 13701.0
1 TraesCS2D01G176400 chr2D 83.333 282 42 4 3706 3986 593407317 593407040 9.550000e-64 255.0
2 TraesCS2D01G176400 chr2D 85.417 96 11 3 6623 6716 64628056 64628150 6.130000e-16 97.1
3 TraesCS2D01G176400 chr2B 92.298 2415 114 13 2000 4369 172220091 172222478 0.000000e+00 3363.0
4 TraesCS2D01G176400 chr2B 93.330 2264 90 26 4378 6623 172222537 172224757 0.000000e+00 3288.0
5 TraesCS2D01G176400 chr2B 92.870 1669 77 21 329 1979 172218194 172219838 0.000000e+00 2385.0
6 TraesCS2D01G176400 chr2B 83.672 1133 140 26 2215 3309 20316848 20317973 0.000000e+00 1026.0
7 TraesCS2D01G176400 chr2B 92.901 324 11 5 1 324 172217844 172218155 1.890000e-125 460.0
8 TraesCS2D01G176400 chr2B 77.341 534 66 33 6623 7117 138128650 138129167 1.590000e-66 265.0
9 TraesCS2D01G176400 chr2B 93.396 106 7 0 5483 5588 580938503 580938398 2.770000e-34 158.0
10 TraesCS2D01G176400 chr2B 93.396 106 7 0 5483 5588 716359620 716359725 2.770000e-34 158.0
11 TraesCS2D01G176400 chr2B 92.453 106 8 0 5483 5588 580653176 580653071 1.290000e-32 152.0
12 TraesCS2D01G176400 chr2B 96.154 78 3 0 1973 2050 172220013 172220090 2.170000e-25 128.0
13 TraesCS2D01G176400 chr2B 87.179 78 9 1 6623 6699 100984897 100984974 3.690000e-13 87.9
14 TraesCS2D01G176400 chr2A 92.209 2028 72 30 4614 6623 122148454 122150413 0.000000e+00 2791.0
15 TraesCS2D01G176400 chr2A 93.746 1631 73 16 918 2538 122145074 122146685 0.000000e+00 2420.0
16 TraesCS2D01G176400 chr2A 91.993 1099 44 12 2836 3909 122147228 122148307 0.000000e+00 1502.0
17 TraesCS2D01G176400 chr2A 95.038 524 23 2 329 850 122144093 122144615 0.000000e+00 821.0
18 TraesCS2D01G176400 chr2A 95.062 324 16 0 1 324 122143731 122144054 1.850000e-140 510.0
19 TraesCS2D01G176400 chr2A 96.396 222 8 0 2614 2835 122146715 122146936 4.230000e-97 366.0
20 TraesCS2D01G176400 chr2A 84.559 136 7 5 4452 4587 122148338 122148459 1.010000e-23 122.0
21 TraesCS2D01G176400 chr3B 83.583 1133 141 28 2215 3309 191574735 191573610 0.000000e+00 1020.0
22 TraesCS2D01G176400 chr3B 86.667 210 22 3 3997 4201 260865649 260865441 2.080000e-55 228.0
23 TraesCS2D01G176400 chr3B 98.611 72 1 0 5628 5699 550898590 550898661 2.170000e-25 128.0
24 TraesCS2D01G176400 chr3B 90.123 81 7 1 6626 6705 5228589 5228509 3.660000e-18 104.0
25 TraesCS2D01G176400 chr3B 79.167 96 14 6 7101 7194 567314465 567314556 2.240000e-05 62.1
26 TraesCS2D01G176400 chr7A 82.966 1133 148 24 2215 3309 264574688 264575813 0.000000e+00 981.0
27 TraesCS2D01G176400 chr7A 82.652 905 115 26 2215 3090 348212118 348213009 0.000000e+00 763.0
28 TraesCS2D01G176400 chr7A 93.056 72 4 1 6624 6695 512259595 512259665 3.660000e-18 104.0
29 TraesCS2D01G176400 chr7A 88.462 52 2 4 6621 6672 95945885 95945838 8.040000e-05 60.2
30 TraesCS2D01G176400 chr3D 82.716 1134 150 29 2215 3309 212268577 212267451 0.000000e+00 966.0
31 TraesCS2D01G176400 chr3D 73.077 624 88 38 6626 7192 465072882 465072282 1.670000e-31 148.0
32 TraesCS2D01G176400 chr1B 83.395 1078 134 24 2270 3309 12841569 12840499 0.000000e+00 957.0
33 TraesCS2D01G176400 chr5B 86.139 404 48 6 2215 2611 590385422 590385020 5.320000e-116 429.0
34 TraesCS2D01G176400 chr5B 81.224 474 41 21 3898 4357 187044662 187045101 9.220000e-89 339.0
35 TraesCS2D01G176400 chr5D 81.224 474 42 24 3898 4357 137973303 137973743 9.220000e-89 339.0
36 TraesCS2D01G176400 chr5D 96.000 75 3 0 5628 5702 317385414 317385340 1.010000e-23 122.0
37 TraesCS2D01G176400 chr5D 97.222 72 2 0 5628 5699 432292205 432292276 1.010000e-23 122.0
38 TraesCS2D01G176400 chr6D 78.235 510 68 26 3711 4206 296872610 296872130 3.390000e-73 287.0
39 TraesCS2D01G176400 chr6A 88.793 232 21 2 4003 4230 494477036 494477266 5.670000e-71 279.0
40 TraesCS2D01G176400 chr6A 92.754 138 10 0 4220 4357 494477574 494477711 4.540000e-47 200.0
41 TraesCS2D01G176400 chr7D 78.167 371 59 14 3997 4357 629413899 629413541 4.510000e-52 217.0
42 TraesCS2D01G176400 chr7B 84.181 177 24 3 7206 7380 263138493 263138667 1.280000e-37 169.0
43 TraesCS2D01G176400 chr7B 87.671 73 8 1 6626 6697 486717945 486717873 4.770000e-12 84.2
44 TraesCS2D01G176400 chr1A 95.283 106 5 0 5483 5588 526831391 526831496 1.280000e-37 169.0
45 TraesCS2D01G176400 chr3A 93.396 106 7 0 5483 5588 695640277 695640382 2.770000e-34 158.0
46 TraesCS2D01G176400 chr1D 93.396 106 7 0 5483 5588 254525495 254525600 2.770000e-34 158.0
47 TraesCS2D01G176400 chr1D 97.222 72 2 0 5628 5699 459899182 459899253 1.010000e-23 122.0
48 TraesCS2D01G176400 chr1D 96.000 75 3 0 5628 5702 459900449 459900375 1.010000e-23 122.0
49 TraesCS2D01G176400 chr1D 95.349 43 0 1 5443 5483 130941548 130941506 4.800000e-07 67.6
50 TraesCS2D01G176400 chr1D 94.872 39 2 0 5590 5628 51867927 51867889 2.240000e-05 62.1
51 TraesCS2D01G176400 chr1D 94.872 39 2 0 5590 5628 254439049 254439087 2.240000e-05 62.1
52 TraesCS2D01G176400 chr1D 94.872 39 2 0 5590 5628 491424918 491424880 2.240000e-05 62.1
53 TraesCS2D01G176400 chr1D 100.000 29 0 0 6628 6656 51033248 51033220 4.000000e-03 54.7
54 TraesCS2D01G176400 chr4A 92.453 106 8 0 5483 5588 583869021 583868916 1.290000e-32 152.0
55 TraesCS2D01G176400 chr4A 100.000 28 0 0 7167 7194 117114683 117114656 1.300000e-02 52.8
56 TraesCS2D01G176400 chr5A 97.333 75 2 0 5628 5702 442270893 442270819 2.170000e-25 128.0
57 TraesCS2D01G176400 chr4D 97.333 75 2 0 5628 5702 245649197 245649123 2.170000e-25 128.0
58 TraesCS2D01G176400 chr4D 87.255 102 11 1 7206 7307 386535524 386535623 1.690000e-21 115.0
59 TraesCS2D01G176400 chr4D 94.872 39 2 0 5590 5628 19872524 19872562 2.240000e-05 62.1
60 TraesCS2D01G176400 chr4B 74.581 358 59 21 6852 7189 548554371 548554716 2.170000e-25 128.0
61 TraesCS2D01G176400 chr4B 94.872 39 2 0 5590 5628 308675752 308675714 2.240000e-05 62.1
62 TraesCS2D01G176400 chr4B 94.872 39 2 0 5590 5628 328491568 328491606 2.240000e-05 62.1
63 TraesCS2D01G176400 chrUn 94.872 39 2 0 5590 5628 425346133 425346095 2.240000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G176400 chr2D 119831545 119838963 7418 False 13701.000000 13701 100.000000 1 7419 1 chr2D.!!$F2 7418
1 TraesCS2D01G176400 chr2B 172217844 172224757 6913 False 1924.800000 3363 93.510600 1 6623 5 chr2B.!!$F5 6622
2 TraesCS2D01G176400 chr2B 20316848 20317973 1125 False 1026.000000 1026 83.672000 2215 3309 1 chr2B.!!$F1 1094
3 TraesCS2D01G176400 chr2B 138128650 138129167 517 False 265.000000 265 77.341000 6623 7117 1 chr2B.!!$F3 494
4 TraesCS2D01G176400 chr2A 122143731 122150413 6682 False 1218.857143 2791 92.714714 1 6623 7 chr2A.!!$F1 6622
5 TraesCS2D01G176400 chr3B 191573610 191574735 1125 True 1020.000000 1020 83.583000 2215 3309 1 chr3B.!!$R2 1094
6 TraesCS2D01G176400 chr7A 264574688 264575813 1125 False 981.000000 981 82.966000 2215 3309 1 chr7A.!!$F1 1094
7 TraesCS2D01G176400 chr7A 348212118 348213009 891 False 763.000000 763 82.652000 2215 3090 1 chr7A.!!$F2 875
8 TraesCS2D01G176400 chr3D 212267451 212268577 1126 True 966.000000 966 82.716000 2215 3309 1 chr3D.!!$R1 1094
9 TraesCS2D01G176400 chr1B 12840499 12841569 1070 True 957.000000 957 83.395000 2270 3309 1 chr1B.!!$R1 1039
10 TraesCS2D01G176400 chr6A 494477036 494477711 675 False 239.500000 279 90.773500 4003 4357 2 chr6A.!!$F1 354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1424 0.467290 GAGAGGCGAGGAGAGGACAT 60.467 60.0 0.00 0.00 0.0 3.06 F
1936 2375 0.463295 CCTAGTAGGGTCGCTCGACA 60.463 60.0 21.71 1.18 46.2 4.35 F
3432 4444 0.174617 GAGCCTGGCAGTCTACACTC 59.825 60.0 22.65 1.96 0.0 3.51 F
4631 6027 0.036105 ACATGGACGATTCTGCAGCA 60.036 50.0 9.47 0.00 0.0 4.41 F
5491 6904 0.252974 TCCCTGATCCCTTTTCCCGA 60.253 55.0 0.00 0.00 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 3251 0.249120 TAATGTCTGGTGGCTGGACG 59.751 55.0 0.00 0.00 33.21 4.79 R
3473 4493 0.677098 TGTCTCTCTAGCGGCTTCGT 60.677 55.0 8.26 0.00 36.07 3.85 R
4952 6348 0.832626 ATGACGATGGGATCTGCACA 59.167 50.0 0.00 0.00 0.00 4.57 R
5874 7287 0.688087 GGAGACGATCCCCTTGTCCT 60.688 60.0 0.00 0.00 43.01 3.85 R
6641 8055 0.531974 TCTCTCCCGTTGCAACACAC 60.532 55.0 28.01 3.05 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 3.649986 GGGCCACGTCGCATATGC 61.650 66.667 18.08 18.08 37.78 3.14
184 185 1.522355 CCACATCGCAGGCACCTAG 60.522 63.158 0.00 0.00 0.00 3.02
269 270 2.032054 TCTGCAACACGAGAAGCAAAAG 59.968 45.455 0.00 0.00 36.44 2.27
324 325 5.518848 TTGTTTCATCAGCATCAAACTGT 57.481 34.783 0.00 0.00 36.50 3.55
325 326 4.862350 TGTTTCATCAGCATCAAACTGTG 58.138 39.130 0.00 0.00 36.50 3.66
569 606 9.565213 CTCATATGAAGAAAATTCACCAAAGAC 57.435 33.333 6.90 0.00 0.00 3.01
618 655 2.817258 TGAATTTGTACCTTGGGAAGCG 59.183 45.455 0.00 0.00 0.00 4.68
670 707 5.845391 ACGAATTTTGGAAAACCTCTTGA 57.155 34.783 0.00 0.00 0.00 3.02
785 823 1.153549 GCCTCGTGTGGTCTCATCC 60.154 63.158 0.00 0.00 0.00 3.51
787 825 1.313091 CCTCGTGTGGTCTCATCCGA 61.313 60.000 0.00 0.00 0.00 4.55
789 827 0.891904 TCGTGTGGTCTCATCCGACA 60.892 55.000 0.00 0.00 35.63 4.35
825 863 1.070445 CCGGATCTCACATGGGCTC 59.930 63.158 0.00 0.00 0.00 4.70
850 888 3.775654 CCCCCTCCGTGCTCACTC 61.776 72.222 0.00 0.00 0.00 3.51
851 889 2.681778 CCCCTCCGTGCTCACTCT 60.682 66.667 0.00 0.00 0.00 3.24
852 890 2.575993 CCCTCCGTGCTCACTCTG 59.424 66.667 0.00 0.00 0.00 3.35
854 892 1.326213 CCCTCCGTGCTCACTCTGAT 61.326 60.000 0.00 0.00 0.00 2.90
856 894 1.066303 CCTCCGTGCTCACTCTGATAC 59.934 57.143 0.00 0.00 0.00 2.24
864 902 1.071385 CTCACTCTGATACATGGGCCC 59.929 57.143 17.59 17.59 0.00 5.80
901 944 0.676736 CCCGTCATAAGCCTCTCTCC 59.323 60.000 0.00 0.00 0.00 3.71
984 1419 1.447317 GCAGAGAGAGGCGAGGAGAG 61.447 65.000 0.00 0.00 0.00 3.20
989 1424 0.467290 GAGAGGCGAGGAGAGGACAT 60.467 60.000 0.00 0.00 0.00 3.06
991 1426 1.791103 GAGGCGAGGAGAGGACATCG 61.791 65.000 0.00 0.00 44.84 3.84
1035 1470 1.154093 CTGCAGCAAATGGTGAGCG 60.154 57.895 16.18 0.21 45.66 5.03
1139 1577 5.527951 TCAAATGTATTTTTGCTGCGTCTT 58.472 33.333 0.00 0.00 36.69 3.01
1347 1785 0.674581 TTGCGGTGCTGATCTGGAAG 60.675 55.000 1.46 0.00 0.00 3.46
1440 1878 1.611491 AGGTTTGGTGGCACGTTATTG 59.389 47.619 12.17 0.00 0.00 1.90
1481 1919 3.251004 GGTTTGTTCTGGTAGAGCAACTG 59.749 47.826 7.47 0.00 43.49 3.16
1685 2123 7.607991 TGAGGGATTGAAACTCTAAATTGAGTC 59.392 37.037 0.00 0.00 45.49 3.36
1936 2375 0.463295 CCTAGTAGGGTCGCTCGACA 60.463 60.000 21.71 1.18 46.20 4.35
2088 2759 5.303589 CCATTTCTACCATGATGGCAAGAAT 59.696 40.000 22.85 12.15 42.67 2.40
2171 2842 5.732633 CTTGATTCCACTGTGAGATCTCTT 58.267 41.667 22.95 2.88 0.00 2.85
2201 2872 5.163258 ACTCTCCAATTAGGTAGGATTGCTG 60.163 44.000 0.00 0.00 39.02 4.41
2333 3005 4.895224 ATCAATACAATGAGCTGCACAG 57.105 40.909 5.89 0.00 31.76 3.66
2334 3006 3.941573 TCAATACAATGAGCTGCACAGA 58.058 40.909 5.89 0.00 0.00 3.41
2336 3008 3.623906 ATACAATGAGCTGCACAGAGT 57.376 42.857 5.89 8.77 0.00 3.24
2337 3009 1.805869 ACAATGAGCTGCACAGAGTC 58.194 50.000 5.89 0.00 0.00 3.36
2338 3010 1.085091 CAATGAGCTGCACAGAGTCC 58.915 55.000 5.89 0.00 0.00 3.85
2396 3075 4.637574 CTGCGTTATAGTTAGCTGCATC 57.362 45.455 1.02 0.00 0.00 3.91
2397 3076 4.302455 CTGCGTTATAGTTAGCTGCATCT 58.698 43.478 1.02 0.00 0.00 2.90
2555 3236 8.199449 CCATTCACTAAAAAGTTGCATATGGAT 58.801 33.333 4.56 0.00 31.55 3.41
2559 3240 8.677300 TCACTAAAAAGTTGCATATGGATCTTC 58.323 33.333 17.66 2.20 0.00 2.87
2570 3251 7.619050 TGCATATGGATCTTCTCTTTCTATCC 58.381 38.462 4.56 0.00 37.27 2.59
2630 3311 7.456725 TCTTCCTCTGTTCTTTGAATTCAGAT 58.543 34.615 8.41 0.00 35.17 2.90
2822 3513 3.249917 GCAAACCTCTTCTCTCTCTTCG 58.750 50.000 0.00 0.00 0.00 3.79
3141 4134 8.701540 CATCTAATTGTCTTCTTCTCATGATCG 58.298 37.037 0.00 0.00 0.00 3.69
3246 4241 4.876107 CAGTGGCTGACTTTTCCGTTATAT 59.124 41.667 0.00 0.00 32.44 0.86
3377 4389 0.391228 TGGCTGTTGCTTCACTCGTA 59.609 50.000 0.00 0.00 39.59 3.43
3395 4407 2.034053 CGTATCAAGGGAGAGTCTGCTC 59.966 54.545 11.79 2.01 41.94 4.26
3400 4412 1.456705 GGGAGAGTCTGCTCGGGAT 60.457 63.158 11.79 0.00 46.03 3.85
3432 4444 0.174617 GAGCCTGGCAGTCTACACTC 59.825 60.000 22.65 1.96 0.00 3.51
3436 4448 0.881796 CTGGCAGTCTACACTCGTCA 59.118 55.000 6.28 0.00 0.00 4.35
3452 4464 2.049802 CAAGGTCGGCGTACGTGT 60.050 61.111 17.90 0.00 44.69 4.49
3525 4545 1.612726 GGGAGACAAGCACAAGCAGAT 60.613 52.381 0.00 0.00 45.49 2.90
3576 4596 5.215160 GGTATTAATACAACTGCTGCATGC 58.785 41.667 23.59 11.82 37.30 4.06
3613 4633 0.322975 GCATAGATGGATGGCCGAGT 59.677 55.000 0.00 0.00 36.79 4.18
3635 4655 4.795970 TTGAAAGAAAACTGAGTCGCTC 57.204 40.909 0.00 0.58 0.00 5.03
3676 4696 0.249699 TTTCACACGACCAGATGCGT 60.250 50.000 0.00 0.00 42.11 5.24
3733 4753 9.699703 GTGAATCTCTACTATTTAATGGGAGTC 57.300 37.037 0.51 0.00 0.00 3.36
3746 4766 2.521126 TGGGAGTCTGTACATCGTTCA 58.479 47.619 0.00 0.00 0.00 3.18
3818 4839 0.402504 TTTACTGACCGCAACCCCAT 59.597 50.000 0.00 0.00 0.00 4.00
3826 4847 1.184970 CCGCAACCCCATCCAGTTTT 61.185 55.000 0.00 0.00 0.00 2.43
3852 4873 7.819415 TGTAAGTGTCGATTCAATCAAATCTCT 59.181 33.333 0.00 0.00 34.19 3.10
3917 4938 7.601856 TCCACTGCCATAAAAAGTAAATCAAG 58.398 34.615 0.00 0.00 0.00 3.02
4054 5075 3.242220 CCATTTCGCTCAATCTTCGTCTG 60.242 47.826 0.00 0.00 0.00 3.51
4061 5082 1.623311 TCAATCTTCGTCTGCCTCCAA 59.377 47.619 0.00 0.00 0.00 3.53
4069 5090 3.136123 CTGCCTCCAACCCATGCG 61.136 66.667 0.00 0.00 0.00 4.73
4097 5118 1.691976 CCAAGAAAACCAGGGGGAAAC 59.308 52.381 0.00 0.00 38.05 2.78
4157 5179 0.898320 CCCTCTACACACTGGGTCTG 59.102 60.000 0.00 0.00 35.13 3.51
4226 5252 3.348119 GGTTGGTGGAAGAGGAGAAATC 58.652 50.000 0.00 0.00 0.00 2.17
4236 5262 5.880887 GGAAGAGGAGAAATCATTTAACGGT 59.119 40.000 0.00 0.00 0.00 4.83
4237 5263 7.046033 GGAAGAGGAGAAATCATTTAACGGTA 58.954 38.462 0.00 0.00 0.00 4.02
4238 5264 7.011202 GGAAGAGGAGAAATCATTTAACGGTAC 59.989 40.741 0.00 0.00 0.00 3.34
4279 5623 8.924303 ACAGCCTAATGTACATGAGTATTCTAA 58.076 33.333 17.50 0.00 31.84 2.10
4342 5688 1.286880 GCTCCTGTTGCAACGCATT 59.713 52.632 23.79 0.00 38.76 3.56
4477 5873 0.942962 GACCTGAGCTGTATGCATGC 59.057 55.000 11.82 11.82 45.94 4.06
4481 5877 1.602851 CTGAGCTGTATGCATGCCTTC 59.397 52.381 16.68 3.70 45.94 3.46
4484 5880 1.064906 AGCTGTATGCATGCCTTCTGT 60.065 47.619 16.68 0.00 45.94 3.41
4518 5914 1.306911 TGCCCATGACCTAGAGCCA 60.307 57.895 0.00 0.00 0.00 4.75
4545 5941 1.934399 GCTCAGCGGCTCAGATCATAC 60.934 57.143 4.61 0.00 0.00 2.39
4631 6027 0.036105 ACATGGACGATTCTGCAGCA 60.036 50.000 9.47 0.00 0.00 4.41
4634 6030 0.894835 TGGACGATTCTGCAGCACTA 59.105 50.000 9.47 0.00 0.00 2.74
4662 6058 4.796495 GTGCTAACCCCAGGCCCG 62.796 72.222 0.00 0.00 0.00 6.13
4682 6078 3.881688 CCGTTCCGTCTCTATTCTTCCTA 59.118 47.826 0.00 0.00 0.00 2.94
4708 6104 9.725019 ATTGTGTCTTGATCAAACACTAGATTA 57.275 29.630 31.18 19.39 42.89 1.75
4952 6348 0.687354 AAGGCCGAGTTGTCATCAGT 59.313 50.000 0.00 0.00 0.00 3.41
4956 6352 0.792640 CCGAGTTGTCATCAGTGTGC 59.207 55.000 0.00 0.00 0.00 4.57
5022 6424 6.406065 GGTTGCCCTTTCTTAGTTTTGTTGTA 60.406 38.462 0.00 0.00 0.00 2.41
5157 6569 1.408683 CGGAGATGGAAGGAAATGGCA 60.409 52.381 0.00 0.00 0.00 4.92
5315 6728 9.171877 CTTGATATTAGCCTCTGAAAAGAAAGT 57.828 33.333 0.00 0.00 0.00 2.66
5409 6822 9.696572 TGAAGGATAGCTATACTAATTCGGTAT 57.303 33.333 19.11 0.00 33.57 2.73
5491 6904 0.252974 TCCCTGATCCCTTTTCCCGA 60.253 55.000 0.00 0.00 0.00 5.14
5594 7007 0.322816 TGGGAGCAGAGCATGGAAAC 60.323 55.000 0.00 0.00 0.00 2.78
5720 7133 4.895297 TCAAACTCAAGGGAGAAATTTGCT 59.105 37.500 0.00 0.00 44.26 3.91
5721 7134 5.363580 TCAAACTCAAGGGAGAAATTTGCTT 59.636 36.000 0.00 0.00 44.26 3.91
5722 7135 5.459536 AACTCAAGGGAGAAATTTGCTTC 57.540 39.130 0.00 0.00 44.26 3.86
5723 7136 4.734266 ACTCAAGGGAGAAATTTGCTTCT 58.266 39.130 0.00 0.00 44.26 2.85
5724 7137 5.143369 ACTCAAGGGAGAAATTTGCTTCTT 58.857 37.500 0.00 0.00 44.26 2.52
5725 7138 6.306987 ACTCAAGGGAGAAATTTGCTTCTTA 58.693 36.000 0.00 0.00 44.26 2.10
5805 7218 3.535561 ACAAAACTGAGGTGACTGTCAG 58.464 45.455 11.41 12.08 44.43 3.51
5843 7256 4.221703 TGTTTTCTTTTGTGTGGTGATGGT 59.778 37.500 0.00 0.00 0.00 3.55
5850 7263 3.011566 TGTGTGGTGATGGTTGAGTTT 57.988 42.857 0.00 0.00 0.00 2.66
5851 7264 3.360867 TGTGTGGTGATGGTTGAGTTTT 58.639 40.909 0.00 0.00 0.00 2.43
5852 7265 3.766591 TGTGTGGTGATGGTTGAGTTTTT 59.233 39.130 0.00 0.00 0.00 1.94
5876 7289 4.448537 TTTGTTGTTGTGTGGAGAAAGG 57.551 40.909 0.00 0.00 0.00 3.11
5877 7290 3.358111 TGTTGTTGTGTGGAGAAAGGA 57.642 42.857 0.00 0.00 0.00 3.36
5880 7293 3.358111 TGTTGTGTGGAGAAAGGACAA 57.642 42.857 0.00 0.00 0.00 3.18
5881 7294 3.278574 TGTTGTGTGGAGAAAGGACAAG 58.721 45.455 0.00 0.00 0.00 3.16
5882 7295 2.618709 GTTGTGTGGAGAAAGGACAAGG 59.381 50.000 0.00 0.00 0.00 3.61
5883 7296 1.142870 TGTGTGGAGAAAGGACAAGGG 59.857 52.381 0.00 0.00 0.00 3.95
5884 7297 0.771127 TGTGGAGAAAGGACAAGGGG 59.229 55.000 0.00 0.00 0.00 4.79
5885 7298 1.064825 GTGGAGAAAGGACAAGGGGA 58.935 55.000 0.00 0.00 0.00 4.81
5886 7299 1.636003 GTGGAGAAAGGACAAGGGGAT 59.364 52.381 0.00 0.00 0.00 3.85
5887 7300 1.916181 TGGAGAAAGGACAAGGGGATC 59.084 52.381 0.00 0.00 0.00 3.36
5888 7301 1.134371 GGAGAAAGGACAAGGGGATCG 60.134 57.143 0.00 0.00 0.00 3.69
5889 7302 1.555533 GAGAAAGGACAAGGGGATCGT 59.444 52.381 0.00 0.00 0.00 3.73
5890 7303 1.555533 AGAAAGGACAAGGGGATCGTC 59.444 52.381 0.00 0.00 0.00 4.20
5891 7304 1.555533 GAAAGGACAAGGGGATCGTCT 59.444 52.381 0.00 0.00 0.00 4.18
5892 7305 1.196012 AAGGACAAGGGGATCGTCTC 58.804 55.000 0.00 0.00 0.00 3.36
5893 7306 0.688087 AGGACAAGGGGATCGTCTCC 60.688 60.000 0.00 0.00 44.11 3.71
5902 7315 0.391263 GGATCGTCTCCCAAACGCTT 60.391 55.000 0.00 0.00 39.90 4.68
6231 7644 1.084289 GCTAAGGGTTGCAAGTACCG 58.916 55.000 0.00 0.00 36.49 4.02
6238 7651 2.334838 GGTTGCAAGTACCGTCTGTAG 58.665 52.381 0.00 0.00 0.00 2.74
6243 7656 2.230750 GCAAGTACCGTCTGTAGAGGTT 59.769 50.000 7.86 0.00 39.31 3.50
6325 7738 6.268797 TGTACATTTCGATTTATGTCGCTC 57.731 37.500 10.46 3.92 41.22 5.03
6367 7781 2.270527 GGAGAGCTTGGCCTGACC 59.729 66.667 3.32 0.00 39.84 4.02
6418 7832 4.215370 CACAGGTGGAGGGACTGA 57.785 61.111 0.00 0.00 41.55 3.41
6419 7833 1.674057 CACAGGTGGAGGGACTGAC 59.326 63.158 0.00 0.00 41.55 3.51
6420 7834 0.833834 CACAGGTGGAGGGACTGACT 60.834 60.000 0.00 0.00 41.55 3.41
6581 7995 3.499338 AGGGCAACTTCATCAATGTGAA 58.501 40.909 0.00 0.00 36.70 3.18
6609 8023 2.411409 GCTTCTGAGCTTGTTCTCTTCG 59.589 50.000 0.00 0.00 45.65 3.79
6619 8033 9.067986 TGAGCTTGTTCTCTTCGATCTATATAA 57.932 33.333 0.00 0.00 34.29 0.98
6655 8069 2.897846 TCCGTGTGTTGCAACGGG 60.898 61.111 23.59 20.42 40.03 5.28
6659 8073 1.831389 CGTGTGTTGCAACGGGAGAG 61.831 60.000 23.79 9.67 0.00 3.20
6663 8077 1.264288 GTGTTGCAACGGGAGAGAAAG 59.736 52.381 23.79 0.00 0.00 2.62
6674 8089 5.908341 ACGGGAGAGAAAGAACATAATCTC 58.092 41.667 0.00 0.00 38.84 2.75
6687 8102 4.404640 ACATAATCTCCAATGGCCATGAG 58.595 43.478 21.63 21.70 0.00 2.90
6691 8106 1.634973 TCTCCAATGGCCATGAGAACA 59.365 47.619 25.92 10.06 31.26 3.18
6707 8122 2.629137 AGAACATTTTGCTGCATCACCA 59.371 40.909 1.84 0.00 0.00 4.17
6714 8129 3.574284 TTGCTGCATCACCAATAACAC 57.426 42.857 1.84 0.00 0.00 3.32
6716 8131 3.156293 TGCTGCATCACCAATAACACTT 58.844 40.909 0.00 0.00 0.00 3.16
6726 8141 3.381908 ACCAATAACACTTTGGCGAACAA 59.618 39.130 2.45 0.00 46.21 2.83
6941 8389 5.996644 TGAAGTACCACAAGGAGAGAAAAA 58.003 37.500 0.00 0.00 38.69 1.94
7004 8452 1.603455 ACATGGACTGGCCCAAACG 60.603 57.895 0.00 0.00 40.04 3.60
7041 8490 1.032794 CCAGCGTGCAGTATAGGAGA 58.967 55.000 0.00 0.00 0.00 3.71
7063 8512 2.851588 TACTGTGTGGGCTGGCCA 60.852 61.111 20.19 20.19 37.98 5.36
7119 8568 7.624360 TTTTGTCACTTATAGGTAGCATTGG 57.376 36.000 0.00 0.00 0.00 3.16
7120 8569 5.950544 TGTCACTTATAGGTAGCATTGGT 57.049 39.130 0.00 0.00 0.00 3.67
7121 8570 5.670485 TGTCACTTATAGGTAGCATTGGTG 58.330 41.667 0.00 0.00 0.00 4.17
7122 8571 5.057149 GTCACTTATAGGTAGCATTGGTGG 58.943 45.833 0.00 0.00 0.00 4.61
7123 8572 4.102524 TCACTTATAGGTAGCATTGGTGGG 59.897 45.833 0.00 0.00 0.00 4.61
7124 8573 4.045022 ACTTATAGGTAGCATTGGTGGGT 58.955 43.478 0.00 0.00 0.00 4.51
7125 8574 5.071250 CACTTATAGGTAGCATTGGTGGGTA 59.929 44.000 0.00 0.00 0.00 3.69
7126 8575 5.668535 ACTTATAGGTAGCATTGGTGGGTAA 59.331 40.000 0.00 0.00 0.00 2.85
7127 8576 4.706842 ATAGGTAGCATTGGTGGGTAAG 57.293 45.455 0.00 0.00 0.00 2.34
7128 8577 2.557869 AGGTAGCATTGGTGGGTAAGA 58.442 47.619 0.00 0.00 0.00 2.10
7129 8578 3.123273 AGGTAGCATTGGTGGGTAAGAT 58.877 45.455 0.00 0.00 0.00 2.40
7130 8579 3.527665 AGGTAGCATTGGTGGGTAAGATT 59.472 43.478 0.00 0.00 0.00 2.40
7131 8580 4.017499 AGGTAGCATTGGTGGGTAAGATTT 60.017 41.667 0.00 0.00 0.00 2.17
7132 8581 4.709886 GGTAGCATTGGTGGGTAAGATTTT 59.290 41.667 0.00 0.00 0.00 1.82
7133 8582 4.806640 AGCATTGGTGGGTAAGATTTTG 57.193 40.909 0.00 0.00 0.00 2.44
7134 8583 3.055891 AGCATTGGTGGGTAAGATTTTGC 60.056 43.478 0.00 0.00 0.00 3.68
7135 8584 3.306641 GCATTGGTGGGTAAGATTTTGCA 60.307 43.478 0.00 0.00 0.00 4.08
7136 8585 4.802248 GCATTGGTGGGTAAGATTTTGCAA 60.802 41.667 0.00 0.00 0.00 4.08
7137 8586 5.490159 CATTGGTGGGTAAGATTTTGCAAT 58.510 37.500 0.00 0.00 0.00 3.56
7138 8587 5.559148 TTGGTGGGTAAGATTTTGCAATT 57.441 34.783 0.00 0.00 0.00 2.32
7139 8588 5.559148 TGGTGGGTAAGATTTTGCAATTT 57.441 34.783 0.00 0.00 0.00 1.82
7140 8589 5.934781 TGGTGGGTAAGATTTTGCAATTTT 58.065 33.333 0.00 0.00 0.00 1.82
7141 8590 5.762218 TGGTGGGTAAGATTTTGCAATTTTG 59.238 36.000 0.00 0.00 0.00 2.44
7142 8591 5.994668 GGTGGGTAAGATTTTGCAATTTTGA 59.005 36.000 0.00 0.00 0.00 2.69
7143 8592 6.147656 GGTGGGTAAGATTTTGCAATTTTGAG 59.852 38.462 0.00 0.00 0.00 3.02
7144 8593 6.147656 GTGGGTAAGATTTTGCAATTTTGAGG 59.852 38.462 0.00 0.00 0.00 3.86
7145 8594 5.643348 GGGTAAGATTTTGCAATTTTGAGGG 59.357 40.000 0.00 0.00 0.00 4.30
7146 8595 5.122239 GGTAAGATTTTGCAATTTTGAGGGC 59.878 40.000 0.00 0.00 0.00 5.19
7147 8596 4.354893 AGATTTTGCAATTTTGAGGGCA 57.645 36.364 0.00 0.00 0.00 5.36
7148 8597 4.716794 AGATTTTGCAATTTTGAGGGCAA 58.283 34.783 0.00 0.00 43.79 4.52
7149 8598 5.318630 AGATTTTGCAATTTTGAGGGCAAT 58.681 33.333 0.00 0.00 44.70 3.56
7150 8599 5.771165 AGATTTTGCAATTTTGAGGGCAATT 59.229 32.000 0.00 0.00 44.70 2.32
7151 8600 5.848833 TTTTGCAATTTTGAGGGCAATTT 57.151 30.435 0.00 0.00 44.70 1.82
7152 8601 6.949352 TTTTGCAATTTTGAGGGCAATTTA 57.051 29.167 0.00 0.00 44.70 1.40
7153 8602 7.521871 TTTTGCAATTTTGAGGGCAATTTAT 57.478 28.000 0.00 0.00 44.70 1.40
7154 8603 6.497785 TTGCAATTTTGAGGGCAATTTATG 57.502 33.333 0.00 0.00 40.94 1.90
7155 8604 5.558818 TGCAATTTTGAGGGCAATTTATGT 58.441 33.333 0.00 0.00 33.25 2.29
7156 8605 5.411977 TGCAATTTTGAGGGCAATTTATGTG 59.588 36.000 0.00 0.00 33.25 3.21
7157 8606 5.642919 GCAATTTTGAGGGCAATTTATGTGA 59.357 36.000 0.00 0.00 33.25 3.58
7158 8607 6.316890 GCAATTTTGAGGGCAATTTATGTGAT 59.683 34.615 0.00 0.00 33.25 3.06
7159 8608 7.677747 GCAATTTTGAGGGCAATTTATGTGATG 60.678 37.037 0.00 0.00 33.25 3.07
7160 8609 5.999205 TTTGAGGGCAATTTATGTGATGT 57.001 34.783 0.00 0.00 33.25 3.06
7161 8610 7.473735 TTTTGAGGGCAATTTATGTGATGTA 57.526 32.000 0.00 0.00 33.25 2.29
7162 8611 6.449635 TTGAGGGCAATTTATGTGATGTAC 57.550 37.500 0.00 0.00 0.00 2.90
7163 8612 4.887071 TGAGGGCAATTTATGTGATGTACC 59.113 41.667 0.00 0.00 0.00 3.34
7164 8613 3.882888 AGGGCAATTTATGTGATGTACCG 59.117 43.478 0.00 0.00 0.00 4.02
7165 8614 3.630312 GGGCAATTTATGTGATGTACCGT 59.370 43.478 0.00 0.00 0.00 4.83
7166 8615 4.261031 GGGCAATTTATGTGATGTACCGTC 60.261 45.833 0.00 0.00 0.00 4.79
7167 8616 4.334203 GGCAATTTATGTGATGTACCGTCA 59.666 41.667 0.00 0.00 0.00 4.35
7168 8617 5.501715 GCAATTTATGTGATGTACCGTCAG 58.498 41.667 0.00 0.00 29.40 3.51
7169 8618 5.293324 GCAATTTATGTGATGTACCGTCAGA 59.707 40.000 0.00 0.00 29.40 3.27
7170 8619 6.183360 GCAATTTATGTGATGTACCGTCAGAA 60.183 38.462 0.00 0.00 29.40 3.02
7171 8620 7.401860 CAATTTATGTGATGTACCGTCAGAAG 58.598 38.462 0.00 0.00 29.40 2.85
7172 8621 2.363788 TGTGATGTACCGTCAGAAGC 57.636 50.000 0.00 0.00 29.40 3.86
7173 8622 1.616374 TGTGATGTACCGTCAGAAGCA 59.384 47.619 0.00 0.00 29.40 3.91
7174 8623 1.993370 GTGATGTACCGTCAGAAGCAC 59.007 52.381 0.00 0.00 29.40 4.40
7175 8624 1.893137 TGATGTACCGTCAGAAGCACT 59.107 47.619 0.00 0.00 0.00 4.40
7176 8625 3.086282 TGATGTACCGTCAGAAGCACTA 58.914 45.455 0.00 0.00 0.00 2.74
7177 8626 3.508402 TGATGTACCGTCAGAAGCACTAA 59.492 43.478 0.00 0.00 0.00 2.24
7178 8627 4.159693 TGATGTACCGTCAGAAGCACTAAT 59.840 41.667 0.00 0.00 0.00 1.73
7179 8628 3.845178 TGTACCGTCAGAAGCACTAATG 58.155 45.455 0.00 0.00 0.00 1.90
7180 8629 3.508402 TGTACCGTCAGAAGCACTAATGA 59.492 43.478 0.00 0.00 0.00 2.57
7181 8630 2.960819 ACCGTCAGAAGCACTAATGAC 58.039 47.619 5.50 5.50 38.91 3.06
7182 8631 2.563179 ACCGTCAGAAGCACTAATGACT 59.437 45.455 11.28 0.00 39.89 3.41
7183 8632 3.006967 ACCGTCAGAAGCACTAATGACTT 59.993 43.478 11.28 0.00 39.89 3.01
7184 8633 3.997021 CCGTCAGAAGCACTAATGACTTT 59.003 43.478 11.28 0.00 39.89 2.66
7185 8634 5.168569 CCGTCAGAAGCACTAATGACTTTA 58.831 41.667 11.28 0.00 39.89 1.85
7186 8635 5.812642 CCGTCAGAAGCACTAATGACTTTAT 59.187 40.000 11.28 0.00 39.89 1.40
7187 8636 6.313905 CCGTCAGAAGCACTAATGACTTTATT 59.686 38.462 11.28 0.00 39.89 1.40
7188 8637 7.491372 CCGTCAGAAGCACTAATGACTTTATTA 59.509 37.037 11.28 0.00 39.89 0.98
7189 8638 8.535592 CGTCAGAAGCACTAATGACTTTATTAG 58.464 37.037 11.28 0.00 43.21 1.73
7194 8643 9.262358 GAAGCACTAATGACTTTATTAGTAGGG 57.738 37.037 9.95 2.06 46.67 3.53
7195 8644 8.548880 AGCACTAATGACTTTATTAGTAGGGA 57.451 34.615 9.95 0.00 46.67 4.20
7196 8645 8.989131 AGCACTAATGACTTTATTAGTAGGGAA 58.011 33.333 9.95 0.00 46.67 3.97
7197 8646 9.609346 GCACTAATGACTTTATTAGTAGGGAAA 57.391 33.333 9.95 0.00 46.67 3.13
7202 8651 6.885922 TGACTTTATTAGTAGGGAAAGAGGC 58.114 40.000 0.00 0.00 37.17 4.70
7203 8652 6.442564 TGACTTTATTAGTAGGGAAAGAGGCA 59.557 38.462 0.00 0.00 37.17 4.75
7204 8653 7.127339 TGACTTTATTAGTAGGGAAAGAGGCAT 59.873 37.037 0.00 0.00 37.17 4.40
7205 8654 7.873195 ACTTTATTAGTAGGGAAAGAGGCATT 58.127 34.615 0.00 0.00 34.56 3.56
7206 8655 8.999895 ACTTTATTAGTAGGGAAAGAGGCATTA 58.000 33.333 0.00 0.00 34.56 1.90
7207 8656 9.274206 CTTTATTAGTAGGGAAAGAGGCATTAC 57.726 37.037 0.00 0.00 31.83 1.89
7208 8657 8.562949 TTATTAGTAGGGAAAGAGGCATTACT 57.437 34.615 0.00 0.00 0.00 2.24
7209 8658 6.886178 TTAGTAGGGAAAGAGGCATTACTT 57.114 37.500 0.00 0.00 0.00 2.24
7210 8659 5.360649 AGTAGGGAAAGAGGCATTACTTC 57.639 43.478 0.00 0.00 0.00 3.01
7211 8660 4.783227 AGTAGGGAAAGAGGCATTACTTCA 59.217 41.667 0.00 0.00 0.00 3.02
7212 8661 4.870021 AGGGAAAGAGGCATTACTTCAT 57.130 40.909 0.00 0.00 0.00 2.57
7213 8662 4.786425 AGGGAAAGAGGCATTACTTCATC 58.214 43.478 0.00 0.00 0.00 2.92
7214 8663 4.476479 AGGGAAAGAGGCATTACTTCATCT 59.524 41.667 0.00 0.00 0.00 2.90
7215 8664 5.667626 AGGGAAAGAGGCATTACTTCATCTA 59.332 40.000 0.00 0.00 0.00 1.98
7216 8665 5.994668 GGGAAAGAGGCATTACTTCATCTAG 59.005 44.000 0.00 0.00 0.00 2.43
7217 8666 6.183361 GGGAAAGAGGCATTACTTCATCTAGA 60.183 42.308 0.00 0.00 0.00 2.43
7218 8667 7.275920 GGAAAGAGGCATTACTTCATCTAGAA 58.724 38.462 0.00 0.00 34.41 2.10
7219 8668 7.770897 GGAAAGAGGCATTACTTCATCTAGAAA 59.229 37.037 0.00 0.00 35.40 2.52
7220 8669 8.499403 AAAGAGGCATTACTTCATCTAGAAAC 57.501 34.615 0.00 0.00 35.40 2.78
7221 8670 7.187824 AGAGGCATTACTTCATCTAGAAACA 57.812 36.000 0.00 0.00 35.40 2.83
7222 8671 7.624549 AGAGGCATTACTTCATCTAGAAACAA 58.375 34.615 0.00 0.00 35.40 2.83
7223 8672 8.103305 AGAGGCATTACTTCATCTAGAAACAAA 58.897 33.333 0.00 0.00 35.40 2.83
7224 8673 8.635765 AGGCATTACTTCATCTAGAAACAAAA 57.364 30.769 0.00 0.00 35.40 2.44
7225 8674 9.077885 AGGCATTACTTCATCTAGAAACAAAAA 57.922 29.630 0.00 0.00 35.40 1.94
7226 8675 9.860898 GGCATTACTTCATCTAGAAACAAAAAT 57.139 29.630 0.00 0.00 35.40 1.82
7271 8720 8.621532 TTAAGTAAAAACATCAGCATCTCTGT 57.378 30.769 0.00 0.00 43.32 3.41
7272 8721 7.516198 AAGTAAAAACATCAGCATCTCTGTT 57.484 32.000 0.00 0.00 43.32 3.16
7273 8722 7.516198 AGTAAAAACATCAGCATCTCTGTTT 57.484 32.000 0.00 0.00 42.05 2.83
7274 8723 8.621532 AGTAAAAACATCAGCATCTCTGTTTA 57.378 30.769 0.00 0.00 40.03 2.01
7275 8724 8.507249 AGTAAAAACATCAGCATCTCTGTTTAC 58.493 33.333 0.00 0.00 40.03 2.01
7276 8725 7.516198 AAAAACATCAGCATCTCTGTTTACT 57.484 32.000 0.00 0.00 40.03 2.24
7277 8726 7.516198 AAAACATCAGCATCTCTGTTTACTT 57.484 32.000 0.00 0.00 40.03 2.24
7278 8727 7.516198 AAACATCAGCATCTCTGTTTACTTT 57.484 32.000 0.00 0.00 43.32 2.66
7279 8728 6.734104 ACATCAGCATCTCTGTTTACTTTC 57.266 37.500 0.00 0.00 43.32 2.62
7280 8729 5.349817 ACATCAGCATCTCTGTTTACTTTCG 59.650 40.000 0.00 0.00 43.32 3.46
7281 8730 4.883083 TCAGCATCTCTGTTTACTTTCGT 58.117 39.130 0.00 0.00 43.32 3.85
7282 8731 5.297547 TCAGCATCTCTGTTTACTTTCGTT 58.702 37.500 0.00 0.00 43.32 3.85
7283 8732 6.452242 TCAGCATCTCTGTTTACTTTCGTTA 58.548 36.000 0.00 0.00 43.32 3.18
7284 8733 7.097192 TCAGCATCTCTGTTTACTTTCGTTAT 58.903 34.615 0.00 0.00 43.32 1.89
7285 8734 8.248253 TCAGCATCTCTGTTTACTTTCGTTATA 58.752 33.333 0.00 0.00 43.32 0.98
7286 8735 9.035607 CAGCATCTCTGTTTACTTTCGTTATAT 57.964 33.333 0.00 0.00 38.02 0.86
7287 8736 9.250624 AGCATCTCTGTTTACTTTCGTTATATC 57.749 33.333 0.00 0.00 0.00 1.63
7288 8737 9.031360 GCATCTCTGTTTACTTTCGTTATATCA 57.969 33.333 0.00 0.00 0.00 2.15
7301 8750 9.162793 CTTTCGTTATATCATCAAAACTGATGC 57.837 33.333 9.73 0.00 43.83 3.91
7302 8751 8.437360 TTCGTTATATCATCAAAACTGATGCT 57.563 30.769 9.73 3.91 43.83 3.79
7303 8752 9.541143 TTCGTTATATCATCAAAACTGATGCTA 57.459 29.630 9.73 5.84 43.83 3.49
7304 8753 9.196552 TCGTTATATCATCAAAACTGATGCTAG 57.803 33.333 9.73 0.00 43.83 3.42
7305 8754 9.196552 CGTTATATCATCAAAACTGATGCTAGA 57.803 33.333 9.73 0.79 43.83 2.43
7310 8759 7.692460 TCATCAAAACTGATGCTAGATTTGT 57.308 32.000 9.73 4.79 43.83 2.83
7311 8760 8.114331 TCATCAAAACTGATGCTAGATTTGTT 57.886 30.769 9.73 7.31 43.83 2.83
7312 8761 9.230122 TCATCAAAACTGATGCTAGATTTGTTA 57.770 29.630 9.73 2.98 43.83 2.41
7313 8762 9.844790 CATCAAAACTGATGCTAGATTTGTTAA 57.155 29.630 13.87 2.51 39.79 2.01
7320 8769 9.448438 ACTGATGCTAGATTTGTTAATACAACA 57.552 29.630 0.00 0.00 43.66 3.33
7340 8789 8.251383 ACAACATAATAGTAGTACAGATGGCT 57.749 34.615 2.52 0.00 0.00 4.75
7341 8790 8.705594 ACAACATAATAGTAGTACAGATGGCTT 58.294 33.333 2.52 0.00 0.00 4.35
7342 8791 8.982685 CAACATAATAGTAGTACAGATGGCTTG 58.017 37.037 2.52 0.00 0.00 4.01
7343 8792 8.478775 ACATAATAGTAGTACAGATGGCTTGA 57.521 34.615 2.52 0.00 0.00 3.02
7344 8793 8.580720 ACATAATAGTAGTACAGATGGCTTGAG 58.419 37.037 2.52 0.00 0.00 3.02
7345 8794 3.810310 AGTAGTACAGATGGCTTGAGC 57.190 47.619 2.52 0.00 41.14 4.26
7346 8795 3.370104 AGTAGTACAGATGGCTTGAGCT 58.630 45.455 2.52 0.00 41.70 4.09
7347 8796 3.772025 AGTAGTACAGATGGCTTGAGCTT 59.228 43.478 2.52 0.00 41.70 3.74
7348 8797 3.258971 AGTACAGATGGCTTGAGCTTC 57.741 47.619 2.66 1.27 41.70 3.86
7349 8798 2.093235 AGTACAGATGGCTTGAGCTTCC 60.093 50.000 2.66 0.00 41.70 3.46
7350 8799 0.694771 ACAGATGGCTTGAGCTTCCA 59.305 50.000 2.66 0.00 41.70 3.53
7351 8800 1.074405 ACAGATGGCTTGAGCTTCCAA 59.926 47.619 2.66 0.00 41.70 3.53
7352 8801 2.165167 CAGATGGCTTGAGCTTCCAAA 58.835 47.619 2.66 0.00 41.70 3.28
7353 8802 2.163815 CAGATGGCTTGAGCTTCCAAAG 59.836 50.000 2.66 0.00 41.70 2.77
7354 8803 2.165998 GATGGCTTGAGCTTCCAAAGT 58.834 47.619 2.66 0.00 41.70 2.66
7355 8804 1.321474 TGGCTTGAGCTTCCAAAGTG 58.679 50.000 2.66 0.00 41.70 3.16
7356 8805 1.322442 GGCTTGAGCTTCCAAAGTGT 58.678 50.000 2.66 0.00 41.70 3.55
7357 8806 2.158682 TGGCTTGAGCTTCCAAAGTGTA 60.159 45.455 2.66 0.00 41.70 2.90
7358 8807 2.226674 GGCTTGAGCTTCCAAAGTGTAC 59.773 50.000 2.66 0.00 41.70 2.90
7359 8808 2.878406 GCTTGAGCTTCCAAAGTGTACA 59.122 45.455 0.00 0.00 38.21 2.90
7360 8809 3.503748 GCTTGAGCTTCCAAAGTGTACAT 59.496 43.478 0.00 0.00 38.21 2.29
7361 8810 4.695455 GCTTGAGCTTCCAAAGTGTACATA 59.305 41.667 0.00 0.00 38.21 2.29
7362 8811 5.390991 GCTTGAGCTTCCAAAGTGTACATAC 60.391 44.000 0.00 0.00 38.21 2.39
7363 8812 5.483685 TGAGCTTCCAAAGTGTACATACT 57.516 39.130 0.00 0.00 0.00 2.12
7364 8813 5.237815 TGAGCTTCCAAAGTGTACATACTG 58.762 41.667 0.00 0.00 0.00 2.74
7365 8814 5.221641 TGAGCTTCCAAAGTGTACATACTGT 60.222 40.000 0.00 0.00 0.00 3.55
7366 8815 6.014925 TGAGCTTCCAAAGTGTACATACTGTA 60.015 38.462 0.00 0.00 0.00 2.74
7375 8824 3.454371 GTACATACTGTACCCAGCCAG 57.546 52.381 6.22 0.00 45.52 4.85
7376 8825 1.952621 ACATACTGTACCCAGCCAGT 58.047 50.000 0.00 0.00 42.81 4.00
7377 8826 1.555075 ACATACTGTACCCAGCCAGTG 59.445 52.381 2.72 0.00 42.81 3.66
7378 8827 0.541863 ATACTGTACCCAGCCAGTGC 59.458 55.000 2.72 0.00 42.81 4.40
7379 8828 0.834261 TACTGTACCCAGCCAGTGCA 60.834 55.000 2.72 0.00 42.81 4.57
7380 8829 1.073025 CTGTACCCAGCCAGTGCAA 59.927 57.895 0.00 0.00 41.13 4.08
7381 8830 1.228124 TGTACCCAGCCAGTGCAAC 60.228 57.895 0.00 0.00 41.13 4.17
7382 8831 1.228124 GTACCCAGCCAGTGCAACA 60.228 57.895 0.00 0.00 41.43 3.33
7383 8832 1.073025 TACCCAGCCAGTGCAACAG 59.927 57.895 0.00 0.00 41.43 3.16
7384 8833 1.414866 TACCCAGCCAGTGCAACAGA 61.415 55.000 0.00 0.00 41.43 3.41
7385 8834 2.263741 CCCAGCCAGTGCAACAGAC 61.264 63.158 0.00 0.00 41.43 3.51
7386 8835 2.610694 CCAGCCAGTGCAACAGACG 61.611 63.158 0.00 0.00 41.43 4.18
7387 8836 1.889105 CAGCCAGTGCAACAGACGT 60.889 57.895 0.00 0.00 41.43 4.34
7388 8837 0.599991 CAGCCAGTGCAACAGACGTA 60.600 55.000 0.00 0.00 41.43 3.57
7389 8838 0.600255 AGCCAGTGCAACAGACGTAC 60.600 55.000 0.00 0.00 41.43 3.67
7390 8839 0.878523 GCCAGTGCAACAGACGTACA 60.879 55.000 0.00 0.00 41.43 2.90
7391 8840 1.795768 CCAGTGCAACAGACGTACAT 58.204 50.000 0.00 0.00 41.43 2.29
7392 8841 2.929161 GCCAGTGCAACAGACGTACATA 60.929 50.000 0.00 0.00 41.43 2.29
7393 8842 3.322369 CCAGTGCAACAGACGTACATAA 58.678 45.455 0.00 0.00 41.43 1.90
7394 8843 3.122948 CCAGTGCAACAGACGTACATAAC 59.877 47.826 0.00 0.00 41.43 1.89
7395 8844 3.738791 CAGTGCAACAGACGTACATAACA 59.261 43.478 0.00 0.00 41.43 2.41
7396 8845 3.739300 AGTGCAACAGACGTACATAACAC 59.261 43.478 0.00 0.00 41.43 3.32
7397 8846 3.739300 GTGCAACAGACGTACATAACACT 59.261 43.478 0.00 0.00 36.32 3.55
7398 8847 4.919168 GTGCAACAGACGTACATAACACTA 59.081 41.667 0.00 0.00 36.32 2.74
7399 8848 5.403166 GTGCAACAGACGTACATAACACTAA 59.597 40.000 0.00 0.00 36.32 2.24
7400 8849 5.984323 TGCAACAGACGTACATAACACTAAA 59.016 36.000 0.00 0.00 0.00 1.85
7401 8850 6.479331 TGCAACAGACGTACATAACACTAAAA 59.521 34.615 0.00 0.00 0.00 1.52
7402 8851 7.171848 TGCAACAGACGTACATAACACTAAAAT 59.828 33.333 0.00 0.00 0.00 1.82
7403 8852 8.013378 GCAACAGACGTACATAACACTAAAATT 58.987 33.333 0.00 0.00 0.00 1.82
7406 8855 9.695526 ACAGACGTACATAACACTAAAATTACA 57.304 29.630 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.055094 ACCGCAATCTTATGTCCTGAGTT 60.055 43.478 0.00 0.00 0.00 3.01
102 103 1.168714 GCCCGAGAACTCTTTGCAAT 58.831 50.000 0.00 0.00 0.00 3.56
144 145 0.031043 TATCGGGTAATGCGACACCG 59.969 55.000 0.00 0.00 45.52 4.94
184 185 5.470098 TCCTGACAACTTTCTGCTATTTGAC 59.530 40.000 0.00 0.00 0.00 3.18
214 215 5.530915 AGTTCAGCTGTATGTTTGCACTTAA 59.469 36.000 14.67 0.00 0.00 1.85
269 270 4.504097 GTCCATTTGTTCAAGTTCAGTTGC 59.496 41.667 0.00 0.00 0.00 4.17
547 584 6.378582 GCGTCTTTGGTGAATTTTCTTCATA 58.621 36.000 0.00 0.00 0.00 2.15
569 606 0.318762 TTTTCCCCATTTTTCCGGCG 59.681 50.000 0.00 0.00 0.00 6.46
591 628 7.309805 GCTTCCCAAGGTACAAATTCAACTAAT 60.310 37.037 0.00 0.00 0.00 1.73
629 666 4.165779 TCGTACGAAATTTCCTACCGAAC 58.834 43.478 17.11 0.64 0.00 3.95
632 669 5.707411 AATTCGTACGAAATTTCCTACCG 57.293 39.130 32.12 9.58 37.69 4.02
670 707 2.158755 CCTAGCTCCGATTCCCACAAAT 60.159 50.000 0.00 0.00 0.00 2.32
785 823 1.727022 GTACACGTGTCGGGTGTCG 60.727 63.158 27.16 0.00 45.56 4.35
787 825 2.332514 CGTACACGTGTCGGGTGT 59.667 61.111 27.16 0.24 45.56 4.16
825 863 3.015145 ACGGAGGGGGAATGGGTG 61.015 66.667 0.00 0.00 0.00 4.61
850 888 1.227943 CCGTGGGCCCATGTATCAG 60.228 63.158 36.56 20.73 0.00 2.90
851 889 2.915079 CCGTGGGCCCATGTATCA 59.085 61.111 36.56 7.50 0.00 2.15
852 890 2.594592 GCCGTGGGCCCATGTATC 60.595 66.667 36.56 23.38 44.06 2.24
984 1419 4.891727 ATGGCGACGGCGATGTCC 62.892 66.667 18.90 6.44 41.24 4.02
1112 1547 6.158598 ACGCAGCAAAAATACATTTGAGATT 58.841 32.000 4.09 0.00 41.73 2.40
1113 1548 5.713025 ACGCAGCAAAAATACATTTGAGAT 58.287 33.333 4.09 0.00 41.73 2.75
1114 1549 5.048782 AGACGCAGCAAAAATACATTTGAGA 60.049 36.000 4.09 0.00 41.73 3.27
1115 1550 5.156355 AGACGCAGCAAAAATACATTTGAG 58.844 37.500 4.09 0.00 41.73 3.02
1144 1582 0.385029 AGCATGTTGTCGCTGCAAAA 59.615 45.000 0.00 0.00 37.02 2.44
1145 1583 2.032170 AGCATGTTGTCGCTGCAAA 58.968 47.368 0.00 0.00 37.02 3.68
1146 1584 3.748623 AGCATGTTGTCGCTGCAA 58.251 50.000 0.00 0.00 37.02 4.08
1167 1605 1.984570 CTCCTTGTCCTCCTGCGGA 60.985 63.158 0.00 0.00 0.00 5.54
1347 1785 3.930848 CACGAGTTCAACCTAACATACCC 59.069 47.826 0.00 0.00 0.00 3.69
1440 1878 8.419076 ACAAACCAACAAATCACAAACTTATC 57.581 30.769 0.00 0.00 0.00 1.75
1481 1919 1.478137 CAATACGGCGACTCTGCTAC 58.522 55.000 16.62 0.00 34.52 3.58
1507 1945 2.805845 ACGCTCCATACGTGTTATGTC 58.194 47.619 0.00 0.00 43.23 3.06
1508 1946 2.953466 ACGCTCCATACGTGTTATGT 57.047 45.000 0.00 0.00 43.23 2.29
1685 2123 4.675114 GCAAGACCTTTGTAACGAATGTTG 59.325 41.667 0.00 0.00 39.12 3.33
1835 2273 1.627864 TGGTGACATTCGAGGAGACA 58.372 50.000 0.00 0.00 33.40 3.41
1936 2375 1.062810 AGTAAAGGGAGGATCTCGGCT 60.063 52.381 0.00 0.00 43.84 5.52
2020 2640 1.143813 AGCCACAGCCCAGCTTATAT 58.856 50.000 0.00 0.00 41.25 0.86
2072 2743 6.043590 TCTGTAGATATTCTTGCCATCATGGT 59.956 38.462 5.31 0.00 40.46 3.55
2107 2778 5.103982 TCAAGAGGGCCATTGATTTCATAGA 60.104 40.000 17.34 0.00 30.67 1.98
2171 2842 8.798975 ATCCTACCTAATTGGAGAGTAAATCA 57.201 34.615 0.00 0.00 35.52 2.57
2201 2872 1.076485 AATGGTGCCAGATCCCAGC 60.076 57.895 0.00 0.00 0.00 4.85
2555 3236 3.381908 GCTGGACGGATAGAAAGAGAAGA 59.618 47.826 0.00 0.00 0.00 2.87
2559 3240 1.757118 TGGCTGGACGGATAGAAAGAG 59.243 52.381 0.00 0.00 0.00 2.85
2570 3251 0.249120 TAATGTCTGGTGGCTGGACG 59.751 55.000 0.00 0.00 33.21 4.79
2865 3848 1.063174 GATGAGGCTGTGACAAATCGC 59.937 52.381 0.00 0.00 35.78 4.58
3141 4134 3.181472 GCTGGGACCATGGAAATGAAATC 60.181 47.826 21.47 1.99 0.00 2.17
3199 4192 5.877012 GCCCTACCAAAAGTAGTAAACCTAC 59.123 44.000 0.00 0.00 46.15 3.18
3307 4319 5.450137 CGTTGCACAGGTTAGCTACTAGTAT 60.450 44.000 2.33 0.00 34.98 2.12
3377 4389 1.110442 CGAGCAGACTCTCCCTTGAT 58.890 55.000 0.00 0.00 41.09 2.57
3395 4407 1.900016 CCCATGCATGGTCATCCCG 60.900 63.158 37.30 20.53 46.65 5.14
3400 4412 2.276409 GGCTCCCATGCATGGTCA 59.724 61.111 37.30 25.00 46.65 4.02
3432 4444 2.872925 CGTACGCCGACCTTGACG 60.873 66.667 0.52 0.00 39.56 4.35
3436 4448 1.662446 CAACACGTACGCCGACCTT 60.662 57.895 16.72 0.00 40.70 3.50
3473 4493 0.677098 TGTCTCTCTAGCGGCTTCGT 60.677 55.000 8.26 0.00 36.07 3.85
3525 4545 1.894466 CATTTCCATTGGTGCTGGTCA 59.106 47.619 1.86 0.00 35.19 4.02
3613 4633 4.634004 TGAGCGACTCAGTTTTCTTTCAAA 59.366 37.500 5.59 0.00 35.39 2.69
3635 4655 0.942962 GCGAGCCAATCCAGATTCTG 59.057 55.000 6.70 6.70 0.00 3.02
3676 4696 3.172339 CCAAGTTTGGGGGATTGAATCA 58.828 45.455 7.56 0.00 44.70 2.57
3733 4753 2.240493 GGGGGATGAACGATGTACAG 57.760 55.000 0.33 0.00 0.00 2.74
3783 4804 7.764443 CGGTCAGTAAAAGGAAATAGAGAATCA 59.236 37.037 0.00 0.00 37.82 2.57
3818 4839 5.361427 TGAATCGACACTTACAAAACTGGA 58.639 37.500 0.00 0.00 0.00 3.86
3826 4847 7.819415 AGAGATTTGATTGAATCGACACTTACA 59.181 33.333 0.18 0.00 40.22 2.41
3943 4964 4.326227 TAGTGGACCGGCTGGGGT 62.326 66.667 18.00 5.33 44.89 4.95
3955 4976 2.102070 TTTGCCGTGTATGGTAGTGG 57.898 50.000 0.00 0.00 0.00 4.00
3965 4986 3.895232 AGATAGACTGATTTGCCGTGT 57.105 42.857 0.00 0.00 0.00 4.49
4054 5075 1.819632 CTACGCATGGGTTGGAGGC 60.820 63.158 21.44 0.00 0.00 4.70
4069 5090 0.948678 TGGTTTTCTTGGTGCGCTAC 59.051 50.000 9.73 5.08 0.00 3.58
4097 5118 2.530958 AATGGGTTGTAGCGGACCGG 62.531 60.000 17.22 0.00 36.78 5.28
4157 5179 6.196079 ACAAAGACTTGACCTTGAAGAAAC 57.804 37.500 0.00 0.00 36.33 2.78
4236 5262 3.936453 GGCTGTATTGTCGGTTTGATGTA 59.064 43.478 0.00 0.00 0.00 2.29
4237 5263 2.747446 GGCTGTATTGTCGGTTTGATGT 59.253 45.455 0.00 0.00 0.00 3.06
4238 5264 3.009723 AGGCTGTATTGTCGGTTTGATG 58.990 45.455 0.00 0.00 0.00 3.07
4369 5715 1.195115 GCTCAGGTCCATGTAGTCCA 58.805 55.000 0.00 0.00 0.00 4.02
4371 5717 1.195115 TGGCTCAGGTCCATGTAGTC 58.805 55.000 0.00 0.00 0.00 2.59
4372 5718 1.885049 ATGGCTCAGGTCCATGTAGT 58.115 50.000 0.00 0.00 42.39 2.73
4373 5719 3.867600 GCATATGGCTCAGGTCCATGTAG 60.868 52.174 4.56 0.00 43.67 2.74
4374 5720 2.038952 GCATATGGCTCAGGTCCATGTA 59.961 50.000 4.56 0.00 43.67 2.29
4376 5722 1.202842 TGCATATGGCTCAGGTCCATG 60.203 52.381 4.56 0.00 43.67 3.66
4518 5914 0.890542 TGAGCCGCTGAGCAAAATGT 60.891 50.000 4.88 0.00 34.23 2.71
4545 5941 5.291858 TCAGAAAACCAAAGATCGATCGATG 59.708 40.000 33.86 20.80 34.60 3.84
4631 6027 3.243771 GGTTAGCACCGTAGCATGATAGT 60.244 47.826 0.00 0.00 36.85 2.12
4634 6030 1.202651 GGGTTAGCACCGTAGCATGAT 60.203 52.381 0.00 0.00 45.39 2.45
4662 6058 6.697892 CACAATAGGAAGAATAGAGACGGAAC 59.302 42.308 0.00 0.00 0.00 3.62
4682 6078 8.627208 AATCTAGTGTTTGATCAAGACACAAT 57.373 30.769 32.04 24.67 44.56 2.71
4742 6138 3.159213 TCATCAAAAGATGGCACTGGT 57.841 42.857 5.71 0.00 33.61 4.00
4952 6348 0.832626 ATGACGATGGGATCTGCACA 59.167 50.000 0.00 0.00 0.00 4.57
5022 6424 6.071320 GGCATAATTCCTTCATCCTTAAGGT 58.929 40.000 21.04 6.11 43.42 3.50
5073 6475 2.167075 CCAAGATTCAAACATGAGGGGC 59.833 50.000 0.00 0.00 0.00 5.80
5157 6569 3.949113 CTCTCTCTTTCTACGGTAAGGCT 59.051 47.826 0.00 0.00 0.00 4.58
5319 6732 6.272324 TCCCCTGAGTTGAAAGAAAAGATAGA 59.728 38.462 0.00 0.00 0.00 1.98
5409 6822 8.604640 TTGTACCGAATGTGTTTTTGAGTATA 57.395 30.769 0.00 0.00 0.00 1.47
5410 6823 7.499321 TTGTACCGAATGTGTTTTTGAGTAT 57.501 32.000 0.00 0.00 0.00 2.12
5491 6904 0.694771 TGCTGCTTTCTCCAGACCAT 59.305 50.000 0.00 0.00 32.03 3.55
5562 6975 5.105187 GCTCTGCTCCCATTTAAGGAAAAAT 60.105 40.000 0.00 0.00 31.49 1.82
5853 7266 5.011125 TCCTTTCTCCACACAACAACAAAAA 59.989 36.000 0.00 0.00 0.00 1.94
5866 7279 1.064825 TCCCCTTGTCCTTTCTCCAC 58.935 55.000 0.00 0.00 0.00 4.02
5869 7282 1.555533 ACGATCCCCTTGTCCTTTCTC 59.444 52.381 0.00 0.00 0.00 2.87
5871 7284 1.555533 AGACGATCCCCTTGTCCTTTC 59.444 52.381 0.00 0.00 38.86 2.62
5872 7285 1.555533 GAGACGATCCCCTTGTCCTTT 59.444 52.381 0.00 0.00 38.86 3.11
5873 7286 1.196012 GAGACGATCCCCTTGTCCTT 58.804 55.000 0.00 0.00 38.86 3.36
5874 7287 0.688087 GGAGACGATCCCCTTGTCCT 60.688 60.000 0.00 0.00 43.01 3.85
5875 7288 1.823976 GGAGACGATCCCCTTGTCC 59.176 63.158 0.00 0.00 43.01 4.02
5884 7297 2.288961 TAAGCGTTTGGGAGACGATC 57.711 50.000 0.33 0.00 42.82 3.69
5885 7298 2.754946 TTAAGCGTTTGGGAGACGAT 57.245 45.000 0.33 0.00 42.82 3.73
5886 7299 2.754946 ATTAAGCGTTTGGGAGACGA 57.245 45.000 0.33 0.00 42.82 4.20
5887 7300 3.058501 ACAAATTAAGCGTTTGGGAGACG 60.059 43.478 0.00 0.00 40.08 4.18
5888 7301 4.499037 ACAAATTAAGCGTTTGGGAGAC 57.501 40.909 0.00 0.00 40.08 3.36
5889 7302 6.636562 TTTACAAATTAAGCGTTTGGGAGA 57.363 33.333 0.00 0.00 40.08 3.71
5890 7303 6.866248 ACATTTACAAATTAAGCGTTTGGGAG 59.134 34.615 0.00 0.00 40.08 4.30
5891 7304 6.750148 ACATTTACAAATTAAGCGTTTGGGA 58.250 32.000 0.00 0.00 40.08 4.37
5892 7305 7.414814 AACATTTACAAATTAAGCGTTTGGG 57.585 32.000 0.00 0.00 40.08 4.12
5893 7306 8.543774 TCAAACATTTACAAATTAAGCGTTTGG 58.456 29.630 18.02 8.00 40.08 3.28
5896 7309 8.921670 GGATCAAACATTTACAAATTAAGCGTT 58.078 29.630 0.00 0.00 0.00 4.84
6222 7635 1.817447 ACCTCTACAGACGGTACTTGC 59.183 52.381 0.00 0.00 0.00 4.01
6231 7644 9.733219 GTATTACTAACATCAACCTCTACAGAC 57.267 37.037 0.00 0.00 0.00 3.51
6238 7651 7.608761 TGGTTTGGTATTACTAACATCAACCTC 59.391 37.037 11.11 0.00 36.78 3.85
6243 7656 9.337396 GATCATGGTTTGGTATTACTAACATCA 57.663 33.333 0.00 3.97 0.00 3.07
6367 7781 2.277969 CTGCAGCAGATGAAGTACAGG 58.722 52.381 18.42 0.00 32.44 4.00
6413 7827 2.881513 TCAGTCAGTCAGTCAGTCAGTC 59.118 50.000 0.00 0.00 0.00 3.51
6414 7828 2.621055 GTCAGTCAGTCAGTCAGTCAGT 59.379 50.000 0.00 0.00 0.00 3.41
6415 7829 2.620585 TGTCAGTCAGTCAGTCAGTCAG 59.379 50.000 0.00 0.00 0.00 3.51
6416 7830 2.654863 TGTCAGTCAGTCAGTCAGTCA 58.345 47.619 0.00 0.00 0.00 3.41
6417 7831 3.551863 CCTTGTCAGTCAGTCAGTCAGTC 60.552 52.174 0.00 0.00 0.00 3.51
6418 7832 2.363680 CCTTGTCAGTCAGTCAGTCAGT 59.636 50.000 0.00 0.00 0.00 3.41
6419 7833 2.288702 CCCTTGTCAGTCAGTCAGTCAG 60.289 54.545 0.00 0.00 0.00 3.51
6420 7834 1.688735 CCCTTGTCAGTCAGTCAGTCA 59.311 52.381 0.00 0.00 0.00 3.41
6445 7859 3.787001 CTCCGTTCTGGGGAGGGC 61.787 72.222 0.00 0.00 43.10 5.19
6467 7881 2.354510 TCAAGTTTCAGTGCCAAGAACG 59.645 45.455 0.00 0.00 0.00 3.95
6619 8033 6.269307 ACACGGACCCTTTTGCTAGTATATAT 59.731 38.462 0.00 0.00 0.00 0.86
6620 8034 5.599656 ACACGGACCCTTTTGCTAGTATATA 59.400 40.000 0.00 0.00 0.00 0.86
6621 8035 4.407945 ACACGGACCCTTTTGCTAGTATAT 59.592 41.667 0.00 0.00 0.00 0.86
6635 8049 2.719354 GTTGCAACACACGGACCC 59.281 61.111 24.52 0.00 0.00 4.46
6638 8052 2.897846 CCCGTTGCAACACACGGA 60.898 61.111 28.01 0.00 42.17 4.69
6639 8053 2.892334 CTCCCGTTGCAACACACGG 61.892 63.158 28.01 23.21 40.47 4.94
6641 8055 0.531974 TCTCTCCCGTTGCAACACAC 60.532 55.000 28.01 3.05 0.00 3.82
6655 8069 7.255070 GCCATTGGAGATTATGTTCTTTCTCTC 60.255 40.741 6.95 0.00 35.90 3.20
6659 8073 5.360714 TGGCCATTGGAGATTATGTTCTTTC 59.639 40.000 0.00 0.00 0.00 2.62
6663 8077 4.828939 TCATGGCCATTGGAGATTATGTTC 59.171 41.667 17.92 0.00 0.00 3.18
6674 8089 3.899052 AAATGTTCTCATGGCCATTGG 57.101 42.857 17.92 11.97 34.19 3.16
6679 8094 2.613691 CAGCAAAATGTTCTCATGGCC 58.386 47.619 0.00 0.00 34.19 5.36
6687 8102 3.029320 TGGTGATGCAGCAAAATGTTC 57.971 42.857 6.05 0.00 38.96 3.18
6707 8122 6.045955 ACAAATTGTTCGCCAAAGTGTTATT 58.954 32.000 0.00 0.00 36.44 1.40
6788 8210 8.383318 TGAAAGTTTGAAAACAAATGTTTGGA 57.617 26.923 11.94 0.07 46.47 3.53
6959 8407 4.509970 GGCAGCCTGTTTTTAAATTTCGTT 59.490 37.500 3.29 0.00 0.00 3.85
6960 8408 4.055360 GGCAGCCTGTTTTTAAATTTCGT 58.945 39.130 3.29 0.00 0.00 3.85
6961 8409 3.431912 GGGCAGCCTGTTTTTAAATTTCG 59.568 43.478 12.43 0.00 0.00 3.46
6968 8416 3.361174 GCGGGCAGCCTGTTTTTA 58.639 55.556 22.06 0.00 40.81 1.52
6978 8426 3.129502 CAGTCCATGTGCGGGCAG 61.130 66.667 0.00 0.00 30.91 4.85
7006 8454 2.881352 GGAAGAAGACGAGCGCGG 60.881 66.667 15.86 0.00 43.17 6.46
7007 8455 2.126463 TGGAAGAAGACGAGCGCG 60.126 61.111 8.75 8.75 44.79 6.86
7049 8498 4.601794 CCTTGGCCAGCCCACACA 62.602 66.667 5.11 0.00 45.34 3.72
7076 8525 1.474330 AAAATCACGCAGGGGAATCC 58.526 50.000 0.00 0.00 0.00 3.01
7112 8561 3.055891 GCAAAATCTTACCCACCAATGCT 60.056 43.478 0.00 0.00 0.00 3.79
7117 8566 5.559148 AAATTGCAAAATCTTACCCACCA 57.441 34.783 1.71 0.00 0.00 4.17
7118 8567 5.994668 TCAAAATTGCAAAATCTTACCCACC 59.005 36.000 1.71 0.00 0.00 4.61
7119 8568 6.147656 CCTCAAAATTGCAAAATCTTACCCAC 59.852 38.462 1.71 0.00 0.00 4.61
7120 8569 6.229733 CCTCAAAATTGCAAAATCTTACCCA 58.770 36.000 1.71 0.00 0.00 4.51
7121 8570 5.643348 CCCTCAAAATTGCAAAATCTTACCC 59.357 40.000 1.71 0.00 0.00 3.69
7122 8571 5.122239 GCCCTCAAAATTGCAAAATCTTACC 59.878 40.000 1.71 0.00 0.00 2.85
7123 8572 5.700373 TGCCCTCAAAATTGCAAAATCTTAC 59.300 36.000 1.71 0.00 0.00 2.34
7124 8573 5.862845 TGCCCTCAAAATTGCAAAATCTTA 58.137 33.333 1.71 0.00 0.00 2.10
7125 8574 4.716794 TGCCCTCAAAATTGCAAAATCTT 58.283 34.783 1.71 0.00 0.00 2.40
7126 8575 4.354893 TGCCCTCAAAATTGCAAAATCT 57.645 36.364 1.71 0.00 0.00 2.40
7127 8576 5.632244 ATTGCCCTCAAAATTGCAAAATC 57.368 34.783 1.71 0.00 45.71 2.17
7128 8577 6.408107 AAATTGCCCTCAAAATTGCAAAAT 57.592 29.167 1.71 0.00 45.71 1.82
7129 8578 5.848833 AAATTGCCCTCAAAATTGCAAAA 57.151 30.435 1.71 0.00 45.71 2.44
7130 8579 6.489361 ACATAAATTGCCCTCAAAATTGCAAA 59.511 30.769 1.71 0.00 45.71 3.68
7131 8580 6.002704 ACATAAATTGCCCTCAAAATTGCAA 58.997 32.000 0.00 0.00 46.51 4.08
7132 8581 5.411977 CACATAAATTGCCCTCAAAATTGCA 59.588 36.000 0.00 0.00 35.56 4.08
7133 8582 5.642919 TCACATAAATTGCCCTCAAAATTGC 59.357 36.000 0.00 0.00 35.56 3.56
7134 8583 7.334921 ACATCACATAAATTGCCCTCAAAATTG 59.665 33.333 0.00 0.00 35.56 2.32
7135 8584 7.396418 ACATCACATAAATTGCCCTCAAAATT 58.604 30.769 0.00 0.00 35.56 1.82
7136 8585 6.949715 ACATCACATAAATTGCCCTCAAAAT 58.050 32.000 0.00 0.00 35.56 1.82
7137 8586 6.357579 ACATCACATAAATTGCCCTCAAAA 57.642 33.333 0.00 0.00 35.56 2.44
7138 8587 5.999205 ACATCACATAAATTGCCCTCAAA 57.001 34.783 0.00 0.00 35.56 2.69
7139 8588 5.359576 GGTACATCACATAAATTGCCCTCAA 59.640 40.000 0.00 0.00 36.51 3.02
7140 8589 4.887071 GGTACATCACATAAATTGCCCTCA 59.113 41.667 0.00 0.00 0.00 3.86
7141 8590 4.024048 CGGTACATCACATAAATTGCCCTC 60.024 45.833 0.00 0.00 0.00 4.30
7142 8591 3.882888 CGGTACATCACATAAATTGCCCT 59.117 43.478 0.00 0.00 0.00 5.19
7143 8592 3.630312 ACGGTACATCACATAAATTGCCC 59.370 43.478 0.00 0.00 0.00 5.36
7144 8593 4.334203 TGACGGTACATCACATAAATTGCC 59.666 41.667 0.00 0.00 0.00 4.52
7145 8594 5.293324 TCTGACGGTACATCACATAAATTGC 59.707 40.000 0.00 0.00 0.00 3.56
7146 8595 6.902224 TCTGACGGTACATCACATAAATTG 57.098 37.500 0.00 0.00 0.00 2.32
7147 8596 6.037172 GCTTCTGACGGTACATCACATAAATT 59.963 38.462 0.00 0.00 0.00 1.82
7148 8597 5.523916 GCTTCTGACGGTACATCACATAAAT 59.476 40.000 0.00 0.00 0.00 1.40
7149 8598 4.868171 GCTTCTGACGGTACATCACATAAA 59.132 41.667 0.00 0.00 0.00 1.40
7150 8599 4.081917 TGCTTCTGACGGTACATCACATAA 60.082 41.667 0.00 0.00 0.00 1.90
7151 8600 3.445805 TGCTTCTGACGGTACATCACATA 59.554 43.478 0.00 0.00 0.00 2.29
7152 8601 2.233676 TGCTTCTGACGGTACATCACAT 59.766 45.455 0.00 0.00 0.00 3.21
7153 8602 1.616374 TGCTTCTGACGGTACATCACA 59.384 47.619 0.00 0.00 0.00 3.58
7154 8603 1.993370 GTGCTTCTGACGGTACATCAC 59.007 52.381 0.00 0.00 0.00 3.06
7155 8604 1.893137 AGTGCTTCTGACGGTACATCA 59.107 47.619 0.00 0.00 0.00 3.07
7156 8605 2.656560 AGTGCTTCTGACGGTACATC 57.343 50.000 0.00 0.00 0.00 3.06
7157 8606 4.159693 TCATTAGTGCTTCTGACGGTACAT 59.840 41.667 0.00 0.00 0.00 2.29
7158 8607 3.508402 TCATTAGTGCTTCTGACGGTACA 59.492 43.478 0.00 0.00 0.00 2.90
7159 8608 3.858238 GTCATTAGTGCTTCTGACGGTAC 59.142 47.826 0.00 0.00 0.00 3.34
7160 8609 3.762288 AGTCATTAGTGCTTCTGACGGTA 59.238 43.478 0.00 0.00 42.16 4.02
7161 8610 2.563179 AGTCATTAGTGCTTCTGACGGT 59.437 45.455 0.00 0.00 42.16 4.83
7162 8611 3.238108 AGTCATTAGTGCTTCTGACGG 57.762 47.619 0.00 0.00 42.16 4.79
7163 8612 6.893958 ATAAAGTCATTAGTGCTTCTGACG 57.106 37.500 0.00 0.00 42.16 4.35
7164 8613 9.372369 ACTAATAAAGTCATTAGTGCTTCTGAC 57.628 33.333 7.52 0.00 45.60 3.51
7168 8617 9.262358 CCCTACTAATAAAGTCATTAGTGCTTC 57.738 37.037 15.42 0.00 46.35 3.86
7169 8618 8.989131 TCCCTACTAATAAAGTCATTAGTGCTT 58.011 33.333 15.42 0.00 46.35 3.91
7170 8619 8.548880 TCCCTACTAATAAAGTCATTAGTGCT 57.451 34.615 15.42 0.00 46.35 4.40
7171 8620 9.609346 TTTCCCTACTAATAAAGTCATTAGTGC 57.391 33.333 15.42 0.00 46.35 4.40
7176 8625 7.993758 GCCTCTTTCCCTACTAATAAAGTCATT 59.006 37.037 0.00 0.00 39.80 2.57
7177 8626 7.127339 TGCCTCTTTCCCTACTAATAAAGTCAT 59.873 37.037 0.00 0.00 39.80 3.06
7178 8627 6.442564 TGCCTCTTTCCCTACTAATAAAGTCA 59.557 38.462 0.00 0.00 39.80 3.41
7179 8628 6.885922 TGCCTCTTTCCCTACTAATAAAGTC 58.114 40.000 0.00 0.00 39.80 3.01
7180 8629 6.886178 TGCCTCTTTCCCTACTAATAAAGT 57.114 37.500 0.00 0.00 42.62 2.66
7181 8630 9.274206 GTAATGCCTCTTTCCCTACTAATAAAG 57.726 37.037 0.00 0.00 0.00 1.85
7182 8631 8.999895 AGTAATGCCTCTTTCCCTACTAATAAA 58.000 33.333 0.00 0.00 0.00 1.40
7183 8632 8.562949 AGTAATGCCTCTTTCCCTACTAATAA 57.437 34.615 0.00 0.00 0.00 1.40
7184 8633 8.562949 AAGTAATGCCTCTTTCCCTACTAATA 57.437 34.615 0.00 0.00 0.00 0.98
7185 8634 7.127339 TGAAGTAATGCCTCTTTCCCTACTAAT 59.873 37.037 0.00 0.00 0.00 1.73
7186 8635 6.442564 TGAAGTAATGCCTCTTTCCCTACTAA 59.557 38.462 0.00 0.00 0.00 2.24
7187 8636 5.962031 TGAAGTAATGCCTCTTTCCCTACTA 59.038 40.000 0.00 0.00 0.00 1.82
7188 8637 4.783227 TGAAGTAATGCCTCTTTCCCTACT 59.217 41.667 0.00 0.00 0.00 2.57
7189 8638 5.099042 TGAAGTAATGCCTCTTTCCCTAC 57.901 43.478 0.00 0.00 0.00 3.18
7190 8639 5.667626 AGATGAAGTAATGCCTCTTTCCCTA 59.332 40.000 0.00 0.00 0.00 3.53
7191 8640 4.476479 AGATGAAGTAATGCCTCTTTCCCT 59.524 41.667 0.00 0.00 0.00 4.20
7192 8641 4.786425 AGATGAAGTAATGCCTCTTTCCC 58.214 43.478 0.00 0.00 0.00 3.97
7193 8642 6.821388 TCTAGATGAAGTAATGCCTCTTTCC 58.179 40.000 0.00 0.00 0.00 3.13
7194 8643 8.608317 GTTTCTAGATGAAGTAATGCCTCTTTC 58.392 37.037 0.00 0.00 35.89 2.62
7195 8644 8.103305 TGTTTCTAGATGAAGTAATGCCTCTTT 58.897 33.333 0.00 0.00 35.89 2.52
7196 8645 7.624549 TGTTTCTAGATGAAGTAATGCCTCTT 58.375 34.615 0.00 0.00 35.89 2.85
7197 8646 7.187824 TGTTTCTAGATGAAGTAATGCCTCT 57.812 36.000 0.00 0.00 35.89 3.69
7198 8647 7.849804 TTGTTTCTAGATGAAGTAATGCCTC 57.150 36.000 0.00 0.00 35.89 4.70
7199 8648 8.635765 TTTTGTTTCTAGATGAAGTAATGCCT 57.364 30.769 0.00 0.00 35.89 4.75
7200 8649 9.860898 ATTTTTGTTTCTAGATGAAGTAATGCC 57.139 29.630 0.00 0.00 35.89 4.40
7255 8704 8.432006 ACGAAAGTAAACAGAGATGCTGATGTT 61.432 37.037 0.00 0.00 45.75 2.71
7256 8705 7.016277 ACGAAAGTAAACAGAGATGCTGATGT 61.016 38.462 0.00 0.00 45.75 3.06
7257 8706 5.349817 ACGAAAGTAAACAGAGATGCTGATG 59.650 40.000 0.00 0.00 45.75 3.07
7258 8707 5.482908 ACGAAAGTAAACAGAGATGCTGAT 58.517 37.500 0.00 0.00 45.75 2.90
7259 8708 4.883083 ACGAAAGTAAACAGAGATGCTGA 58.117 39.130 0.00 0.00 45.75 4.26
7294 8743 9.448438 TGTTGTATTAACAAATCTAGCATCAGT 57.552 29.630 0.00 0.00 46.84 3.41
7314 8763 9.363401 AGCCATCTGTACTACTATTATGTTGTA 57.637 33.333 0.00 0.00 0.00 2.41
7315 8764 8.251383 AGCCATCTGTACTACTATTATGTTGT 57.749 34.615 0.00 0.00 0.00 3.32
7316 8765 8.982685 CAAGCCATCTGTACTACTATTATGTTG 58.017 37.037 0.00 0.00 0.00 3.33
7317 8766 8.924303 TCAAGCCATCTGTACTACTATTATGTT 58.076 33.333 0.00 0.00 0.00 2.71
7318 8767 8.478775 TCAAGCCATCTGTACTACTATTATGT 57.521 34.615 0.00 0.00 0.00 2.29
7319 8768 7.543868 GCTCAAGCCATCTGTACTACTATTATG 59.456 40.741 0.00 0.00 34.31 1.90
7320 8769 7.453126 AGCTCAAGCCATCTGTACTACTATTAT 59.547 37.037 0.00 0.00 43.38 1.28
7321 8770 6.778069 AGCTCAAGCCATCTGTACTACTATTA 59.222 38.462 0.00 0.00 43.38 0.98
7322 8771 5.600484 AGCTCAAGCCATCTGTACTACTATT 59.400 40.000 0.00 0.00 43.38 1.73
7323 8772 5.144100 AGCTCAAGCCATCTGTACTACTAT 58.856 41.667 0.00 0.00 43.38 2.12
7324 8773 4.537751 AGCTCAAGCCATCTGTACTACTA 58.462 43.478 0.00 0.00 43.38 1.82
7325 8774 3.370104 AGCTCAAGCCATCTGTACTACT 58.630 45.455 0.00 0.00 43.38 2.57
7326 8775 3.810310 AGCTCAAGCCATCTGTACTAC 57.190 47.619 0.00 0.00 43.38 2.73
7327 8776 3.133003 GGAAGCTCAAGCCATCTGTACTA 59.867 47.826 0.00 0.00 43.38 1.82
7328 8777 2.093235 GGAAGCTCAAGCCATCTGTACT 60.093 50.000 0.00 0.00 43.38 2.73
7329 8778 2.284190 GGAAGCTCAAGCCATCTGTAC 58.716 52.381 0.00 0.00 43.38 2.90
7330 8779 1.908619 TGGAAGCTCAAGCCATCTGTA 59.091 47.619 0.00 0.00 43.38 2.74
7331 8780 0.694771 TGGAAGCTCAAGCCATCTGT 59.305 50.000 0.00 0.00 43.38 3.41
7332 8781 1.830279 TTGGAAGCTCAAGCCATCTG 58.170 50.000 0.00 0.00 43.38 2.90
7333 8782 2.224967 ACTTTGGAAGCTCAAGCCATCT 60.225 45.455 0.00 0.00 43.38 2.90
7334 8783 2.094854 CACTTTGGAAGCTCAAGCCATC 60.095 50.000 0.00 0.00 43.38 3.51
7335 8784 1.891150 CACTTTGGAAGCTCAAGCCAT 59.109 47.619 0.00 0.00 43.38 4.40
7336 8785 1.321474 CACTTTGGAAGCTCAAGCCA 58.679 50.000 0.00 0.00 43.38 4.75
7337 8786 1.322442 ACACTTTGGAAGCTCAAGCC 58.678 50.000 0.00 0.00 43.38 4.35
7338 8787 2.878406 TGTACACTTTGGAAGCTCAAGC 59.122 45.455 0.00 0.00 42.49 4.01
7339 8788 5.934625 AGTATGTACACTTTGGAAGCTCAAG 59.065 40.000 0.00 0.00 0.00 3.02
7340 8789 5.700832 CAGTATGTACACTTTGGAAGCTCAA 59.299 40.000 0.00 0.00 0.00 3.02
7341 8790 5.237815 CAGTATGTACACTTTGGAAGCTCA 58.762 41.667 0.00 0.00 0.00 4.26
7342 8791 5.786401 CAGTATGTACACTTTGGAAGCTC 57.214 43.478 0.00 0.00 0.00 4.09
7356 8805 5.002603 GCACTGGCTGGGTACAGTATGTA 62.003 52.174 0.00 0.00 45.52 2.29
7357 8806 4.320676 GCACTGGCTGGGTACAGTATGT 62.321 54.545 0.00 0.00 45.52 2.29
7358 8807 1.743772 GCACTGGCTGGGTACAGTATG 60.744 57.143 0.00 0.00 45.52 2.39
7359 8808 0.541863 GCACTGGCTGGGTACAGTAT 59.458 55.000 0.00 0.00 45.52 2.12
7360 8809 0.834261 TGCACTGGCTGGGTACAGTA 60.834 55.000 0.00 0.00 45.52 2.74
7363 8812 1.228124 GTTGCACTGGCTGGGTACA 60.228 57.895 0.00 0.00 41.91 2.90
7364 8813 1.228124 TGTTGCACTGGCTGGGTAC 60.228 57.895 0.00 0.00 41.91 3.34
7365 8814 1.073025 CTGTTGCACTGGCTGGGTA 59.927 57.895 0.00 0.00 41.91 3.69
7366 8815 2.203394 CTGTTGCACTGGCTGGGT 60.203 61.111 0.00 0.00 41.91 4.51
7367 8816 2.113774 TCTGTTGCACTGGCTGGG 59.886 61.111 0.00 0.00 41.91 4.45
7368 8817 2.610694 CGTCTGTTGCACTGGCTGG 61.611 63.158 0.00 0.00 41.91 4.85
7369 8818 0.599991 TACGTCTGTTGCACTGGCTG 60.600 55.000 0.00 0.00 41.91 4.85
7370 8819 0.600255 GTACGTCTGTTGCACTGGCT 60.600 55.000 0.00 0.00 41.91 4.75
7371 8820 0.878523 TGTACGTCTGTTGCACTGGC 60.879 55.000 0.00 0.00 41.68 4.85
7372 8821 1.795768 ATGTACGTCTGTTGCACTGG 58.204 50.000 0.00 0.00 0.00 4.00
7373 8822 3.738791 TGTTATGTACGTCTGTTGCACTG 59.261 43.478 0.00 0.00 0.00 3.66
7374 8823 3.739300 GTGTTATGTACGTCTGTTGCACT 59.261 43.478 0.00 0.00 0.00 4.40
7375 8824 3.739300 AGTGTTATGTACGTCTGTTGCAC 59.261 43.478 0.00 0.00 0.00 4.57
7376 8825 3.985008 AGTGTTATGTACGTCTGTTGCA 58.015 40.909 0.00 0.00 0.00 4.08
7377 8826 6.456447 TTTAGTGTTATGTACGTCTGTTGC 57.544 37.500 0.00 0.00 0.00 4.17
7380 8829 9.695526 TGTAATTTTAGTGTTATGTACGTCTGT 57.304 29.630 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.