Multiple sequence alignment - TraesCS2D01G176000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G176000 chr2D 100.000 6450 0 0 1 6450 119372278 119378727 0.000000e+00 11912.0
1 TraesCS2D01G176000 chr2D 100.000 31 0 0 4876 4906 476694056 476694086 2.510000e-04 58.4
2 TraesCS2D01G176000 chr2A 94.592 5991 205 59 222 6160 121589584 121595507 0.000000e+00 9158.0
3 TraesCS2D01G176000 chr2A 93.671 79 5 0 6225 6303 715299528 715299606 1.140000e-22 119.0
4 TraesCS2D01G176000 chr2A 94.444 36 2 0 4878 4913 722077231 722077196 1.000000e-03 56.5
5 TraesCS2D01G176000 chr2B 93.378 4576 179 55 351 4876 171788533 171793034 0.000000e+00 6658.0
6 TraesCS2D01G176000 chr2B 89.854 1025 47 18 5225 6226 171793446 171794436 0.000000e+00 1264.0
7 TraesCS2D01G176000 chr2B 93.114 334 12 1 4904 5226 171793031 171793364 4.520000e-131 479.0
8 TraesCS2D01G176000 chr2B 96.774 124 4 0 6326 6449 171794435 171794558 2.360000e-49 207.0
9 TraesCS2D01G176000 chr2B 97.222 36 0 1 4877 4911 46087420 46087385 6.980000e-05 60.2
10 TraesCS2D01G176000 chr4D 74.440 759 145 32 2251 3000 215448897 215449615 1.370000e-71 281.0
11 TraesCS2D01G176000 chr4D 93.506 77 5 0 6225 6301 51798175 51798099 1.470000e-21 115.0
12 TraesCS2D01G176000 chr4D 92.405 79 6 0 6225 6303 503358032 503357954 5.290000e-21 113.0
13 TraesCS2D01G176000 chr5D 93.976 83 5 0 6221 6303 118840572 118840490 6.790000e-25 126.0
14 TraesCS2D01G176000 chr5D 100.000 29 0 0 4877 4905 173753672 173753700 3.000000e-03 54.7
15 TraesCS2D01G176000 chr1A 94.937 79 4 0 6225 6303 168567516 168567594 2.440000e-24 124.0
16 TraesCS2D01G176000 chr7A 93.750 80 5 0 6224 6303 690523832 690523753 3.160000e-23 121.0
17 TraesCS2D01G176000 chr7A 97.059 34 1 0 6302 6335 528300204 528300237 2.510000e-04 58.4
18 TraesCS2D01G176000 chr5A 91.566 83 7 0 6221 6303 128432278 128432196 1.470000e-21 115.0
19 TraesCS2D01G176000 chr6B 92.405 79 6 0 6225 6303 229526619 229526697 5.290000e-21 113.0
20 TraesCS2D01G176000 chr3D 92.405 79 6 0 6225 6303 1899322 1899244 5.290000e-21 113.0
21 TraesCS2D01G176000 chr3B 94.872 39 1 1 4878 4915 813709544 813709582 6.980000e-05 60.2
22 TraesCS2D01G176000 chr1D 100.000 31 0 0 4877 4907 245217222 245217192 2.510000e-04 58.4
23 TraesCS2D01G176000 chr6D 96.970 33 1 0 4879 4911 18673422 18673454 1.000000e-03 56.5
24 TraesCS2D01G176000 chr3A 100.000 30 0 0 4877 4906 747871862 747871833 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G176000 chr2D 119372278 119378727 6449 False 11912 11912 100.000 1 6450 1 chr2D.!!$F1 6449
1 TraesCS2D01G176000 chr2A 121589584 121595507 5923 False 9158 9158 94.592 222 6160 1 chr2A.!!$F1 5938
2 TraesCS2D01G176000 chr2B 171788533 171794558 6025 False 2152 6658 93.280 351 6449 4 chr2B.!!$F1 6098
3 TraesCS2D01G176000 chr4D 215448897 215449615 718 False 281 281 74.440 2251 3000 1 chr4D.!!$F1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.040425 GTCTTTGCAACGTTGGCGAT 60.040 50.0 28.33 0.00 42.00 4.58 F
208 209 0.040514 TCTTTGCAACGTTGGCGATG 60.041 50.0 28.33 19.85 42.60 3.84 F
1821 1864 0.803380 GTTGCGAATTGGCTGCATCC 60.803 55.0 13.84 0.00 38.60 3.51 F
2794 2853 0.883833 GTGTGGATTTCCCTGCTGTG 59.116 55.0 0.00 0.00 35.38 3.66 F
4197 4285 0.543749 CAGGGGTAGCAAGGGAAGAG 59.456 60.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 1521 0.250640 ACAAGCAGAGCCAGACAAGG 60.251 55.000 0.00 0.00 0.00 3.61 R
2174 2227 1.189752 CCTAGTCTGCTTGAGCCAGA 58.810 55.000 0.00 1.37 41.18 3.86 R
3664 3751 1.299620 CAGCAAAGTGCCAGTGTGC 60.300 57.895 6.58 6.58 46.52 4.57 R
4366 4454 2.703536 TGTTGAGTTCACCCTTAGCTGA 59.296 45.455 0.00 0.00 0.00 4.26 R
6176 6400 0.038983 TCCGATTCGTCTGCGTCAAA 60.039 50.000 5.20 0.00 39.49 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.433879 TTTTCAACAACGTGGGCGG 59.566 52.632 0.00 0.00 43.45 6.13
19 20 1.313812 TTTTCAACAACGTGGGCGGT 61.314 50.000 0.00 0.00 43.45 5.68
25 26 2.191109 AACGTGGGCGGTGTTTCT 59.809 55.556 0.00 0.00 43.45 2.52
26 27 2.184167 AACGTGGGCGGTGTTTCTG 61.184 57.895 0.00 0.00 43.45 3.02
27 28 4.025401 CGTGGGCGGTGTTTCTGC 62.025 66.667 0.00 0.00 46.83 4.26
28 29 2.594592 GTGGGCGGTGTTTCTGCT 60.595 61.111 0.00 0.00 46.74 4.24
29 30 2.594303 TGGGCGGTGTTTCTGCTG 60.594 61.111 0.00 0.00 46.74 4.41
30 31 4.043200 GGGCGGTGTTTCTGCTGC 62.043 66.667 0.00 0.00 46.74 5.25
31 32 4.389576 GGCGGTGTTTCTGCTGCG 62.390 66.667 0.00 0.00 46.74 5.18
32 33 3.649986 GCGGTGTTTCTGCTGCGT 61.650 61.111 0.00 0.00 44.39 5.24
33 34 2.551270 CGGTGTTTCTGCTGCGTC 59.449 61.111 0.00 0.00 0.00 5.19
34 35 2.243957 CGGTGTTTCTGCTGCGTCA 61.244 57.895 0.00 0.00 0.00 4.35
35 36 1.568612 CGGTGTTTCTGCTGCGTCAT 61.569 55.000 0.00 0.00 0.00 3.06
36 37 0.166814 GGTGTTTCTGCTGCGTCATC 59.833 55.000 0.00 0.00 0.00 2.92
37 38 0.179240 GTGTTTCTGCTGCGTCATCG 60.179 55.000 0.00 0.00 40.37 3.84
38 39 1.291184 TGTTTCTGCTGCGTCATCGG 61.291 55.000 0.00 0.00 37.56 4.18
39 40 1.741401 TTTCTGCTGCGTCATCGGG 60.741 57.895 0.00 0.00 37.56 5.14
40 41 3.664025 TTCTGCTGCGTCATCGGGG 62.664 63.158 0.00 0.00 37.56 5.73
41 42 4.457496 CTGCTGCGTCATCGGGGT 62.457 66.667 0.00 0.00 37.56 4.95
42 43 3.958147 CTGCTGCGTCATCGGGGTT 62.958 63.158 0.00 0.00 37.56 4.11
43 44 3.499737 GCTGCGTCATCGGGGTTG 61.500 66.667 0.00 0.00 37.56 3.77
44 45 3.499737 CTGCGTCATCGGGGTTGC 61.500 66.667 0.00 0.00 37.56 4.17
47 48 3.186047 CGTCATCGGGGTTGCGAC 61.186 66.667 0.00 0.00 0.00 5.19
48 49 2.264794 GTCATCGGGGTTGCGACT 59.735 61.111 3.59 0.00 0.00 4.18
49 50 1.375523 GTCATCGGGGTTGCGACTT 60.376 57.895 3.59 0.00 0.00 3.01
50 51 1.375396 TCATCGGGGTTGCGACTTG 60.375 57.895 3.59 0.00 0.00 3.16
51 52 2.746277 ATCGGGGTTGCGACTTGC 60.746 61.111 3.59 0.00 46.70 4.01
61 62 2.451693 GCGACTTGCGACCATTACA 58.548 52.632 0.00 0.00 44.57 2.41
62 63 1.006832 GCGACTTGCGACCATTACAT 58.993 50.000 0.00 0.00 44.57 2.29
63 64 1.396996 GCGACTTGCGACCATTACATT 59.603 47.619 0.00 0.00 44.57 2.71
64 65 2.787723 GCGACTTGCGACCATTACATTG 60.788 50.000 0.00 0.00 44.57 2.82
65 66 2.415168 CGACTTGCGACCATTACATTGT 59.585 45.455 0.00 0.00 44.57 2.71
66 67 3.483574 CGACTTGCGACCATTACATTGTC 60.484 47.826 0.00 0.00 44.57 3.18
71 72 2.888594 CGACCATTACATTGTCGGTCT 58.111 47.619 21.36 0.00 45.93 3.85
72 73 3.259064 CGACCATTACATTGTCGGTCTT 58.741 45.455 21.36 0.00 45.93 3.01
73 74 3.062099 CGACCATTACATTGTCGGTCTTG 59.938 47.826 21.36 10.23 45.93 3.02
74 75 4.000988 GACCATTACATTGTCGGTCTTGT 58.999 43.478 18.71 1.17 42.37 3.16
75 76 5.155278 ACCATTACATTGTCGGTCTTGTA 57.845 39.130 0.00 0.00 0.00 2.41
76 77 5.553123 ACCATTACATTGTCGGTCTTGTAA 58.447 37.500 0.00 0.00 38.50 2.41
77 78 5.410439 ACCATTACATTGTCGGTCTTGTAAC 59.590 40.000 0.00 0.00 37.37 2.50
78 79 5.163794 CCATTACATTGTCGGTCTTGTAACC 60.164 44.000 0.00 0.00 37.37 2.85
79 80 3.478857 ACATTGTCGGTCTTGTAACCA 57.521 42.857 0.00 0.00 39.43 3.67
80 81 4.015872 ACATTGTCGGTCTTGTAACCAT 57.984 40.909 0.00 0.00 39.43 3.55
81 82 3.751175 ACATTGTCGGTCTTGTAACCATG 59.249 43.478 0.00 0.00 39.43 3.66
82 83 3.755112 TTGTCGGTCTTGTAACCATGA 57.245 42.857 0.00 0.00 39.43 3.07
83 84 3.034721 TGTCGGTCTTGTAACCATGAC 57.965 47.619 0.00 0.00 42.24 3.06
84 85 2.365941 TGTCGGTCTTGTAACCATGACA 59.634 45.455 0.00 0.00 43.83 3.58
85 86 2.993899 GTCGGTCTTGTAACCATGACAG 59.006 50.000 0.00 6.75 43.83 3.51
86 87 1.732259 CGGTCTTGTAACCATGACAGC 59.268 52.381 0.00 0.00 43.83 4.40
87 88 2.778299 GGTCTTGTAACCATGACAGCA 58.222 47.619 0.00 0.00 43.83 4.41
88 89 3.146066 GGTCTTGTAACCATGACAGCAA 58.854 45.455 0.00 0.00 43.83 3.91
89 90 3.758554 GGTCTTGTAACCATGACAGCAAT 59.241 43.478 0.00 0.00 43.83 3.56
90 91 4.379813 GGTCTTGTAACCATGACAGCAATG 60.380 45.833 0.00 0.00 43.83 2.82
91 92 4.216257 GTCTTGTAACCATGACAGCAATGT 59.784 41.667 0.00 0.00 42.42 2.71
92 93 4.216042 TCTTGTAACCATGACAGCAATGTG 59.784 41.667 0.00 0.00 0.00 3.21
93 94 2.819019 TGTAACCATGACAGCAATGTGG 59.181 45.455 0.00 0.00 36.06 4.17
94 95 1.259609 AACCATGACAGCAATGTGGG 58.740 50.000 0.00 0.00 34.27 4.61
95 96 0.112995 ACCATGACAGCAATGTGGGT 59.887 50.000 0.00 0.00 34.27 4.51
96 97 0.528924 CCATGACAGCAATGTGGGTG 59.471 55.000 0.00 0.00 41.84 4.61
97 98 0.528924 CATGACAGCAATGTGGGTGG 59.471 55.000 0.00 0.00 40.47 4.61
98 99 0.112995 ATGACAGCAATGTGGGTGGT 59.887 50.000 0.00 0.00 40.47 4.16
100 101 4.179361 CAGCAATGTGGGTGGTGT 57.821 55.556 0.00 0.00 39.18 4.16
101 102 2.428834 CAGCAATGTGGGTGGTGTT 58.571 52.632 0.00 0.00 39.18 3.32
102 103 0.752054 CAGCAATGTGGGTGGTGTTT 59.248 50.000 0.00 0.00 39.18 2.83
103 104 1.138661 CAGCAATGTGGGTGGTGTTTT 59.861 47.619 0.00 0.00 39.18 2.43
104 105 1.836802 AGCAATGTGGGTGGTGTTTTT 59.163 42.857 0.00 0.00 0.00 1.94
105 106 2.158971 AGCAATGTGGGTGGTGTTTTTC 60.159 45.455 0.00 0.00 0.00 2.29
106 107 2.419297 GCAATGTGGGTGGTGTTTTTCA 60.419 45.455 0.00 0.00 0.00 2.69
107 108 3.194062 CAATGTGGGTGGTGTTTTTCAC 58.806 45.455 0.00 0.00 45.47 3.18
118 119 4.647424 GTGTTTTTCACAACATCCCTGA 57.353 40.909 0.00 0.00 45.51 3.86
119 120 5.200368 GTGTTTTTCACAACATCCCTGAT 57.800 39.130 0.00 0.00 45.51 2.90
120 121 4.984161 GTGTTTTTCACAACATCCCTGATG 59.016 41.667 2.62 2.62 45.51 3.07
121 122 5.451798 GTGTTTTTCACAACATCCCTGATGT 60.452 40.000 3.94 3.94 44.34 3.06
122 123 7.225027 GTGTTTTTCACAACATCCCTGATGTC 61.225 42.308 9.94 0.00 45.77 3.06
127 128 4.018609 CATCCCTGATGTCGCGAC 57.981 61.111 31.66 31.66 35.54 5.19
128 129 1.592669 CATCCCTGATGTCGCGACC 60.593 63.158 34.34 21.22 35.54 4.79
129 130 2.058001 ATCCCTGATGTCGCGACCA 61.058 57.895 34.34 24.45 0.00 4.02
130 131 1.402896 ATCCCTGATGTCGCGACCAT 61.403 55.000 34.34 26.08 0.00 3.55
131 132 1.592669 CCCTGATGTCGCGACCATC 60.593 63.158 34.34 31.06 0.00 3.51
132 133 1.141665 CCTGATGTCGCGACCATCA 59.858 57.895 32.50 32.50 34.60 3.07
133 134 1.148157 CCTGATGTCGCGACCATCAC 61.148 60.000 31.88 21.87 32.63 3.06
134 135 0.458370 CTGATGTCGCGACCATCACA 60.458 55.000 31.88 24.13 32.63 3.58
135 136 0.175531 TGATGTCGCGACCATCACAT 59.824 50.000 31.88 22.80 31.26 3.21
136 137 1.290203 GATGTCGCGACCATCACATT 58.710 50.000 34.34 10.28 29.43 2.71
137 138 1.004610 GATGTCGCGACCATCACATTG 60.005 52.381 34.34 0.00 29.43 2.82
138 139 1.060937 GTCGCGACCATCACATTGC 59.939 57.895 28.61 0.00 0.00 3.56
139 140 1.079197 TCGCGACCATCACATTGCT 60.079 52.632 3.71 0.00 0.00 3.91
140 141 0.673333 TCGCGACCATCACATTGCTT 60.673 50.000 3.71 0.00 0.00 3.91
141 142 0.521867 CGCGACCATCACATTGCTTG 60.522 55.000 0.00 0.00 0.00 4.01
142 143 0.523072 GCGACCATCACATTGCTTGT 59.477 50.000 0.00 0.00 39.91 3.16
153 154 3.047752 TTGCTTGTGTTGCAACTGC 57.952 47.368 28.61 24.27 44.24 4.40
163 164 2.551270 GCAACTGCAACTCCGACG 59.449 61.111 0.00 0.00 41.59 5.12
164 165 1.954146 GCAACTGCAACTCCGACGA 60.954 57.895 0.00 0.00 41.59 4.20
165 166 1.853319 CAACTGCAACTCCGACGAC 59.147 57.895 0.00 0.00 0.00 4.34
166 167 0.874175 CAACTGCAACTCCGACGACA 60.874 55.000 0.00 0.00 0.00 4.35
167 168 0.874607 AACTGCAACTCCGACGACAC 60.875 55.000 0.00 0.00 0.00 3.67
168 169 2.022129 CTGCAACTCCGACGACACC 61.022 63.158 0.00 0.00 0.00 4.16
169 170 2.028484 GCAACTCCGACGACACCA 59.972 61.111 0.00 0.00 0.00 4.17
170 171 1.593209 GCAACTCCGACGACACCAA 60.593 57.895 0.00 0.00 0.00 3.67
171 172 1.828331 GCAACTCCGACGACACCAAC 61.828 60.000 0.00 0.00 0.00 3.77
172 173 1.299620 AACTCCGACGACACCAACG 60.300 57.895 0.00 0.00 0.00 4.10
173 174 1.727511 AACTCCGACGACACCAACGA 61.728 55.000 0.00 0.00 34.70 3.85
174 175 1.211969 CTCCGACGACACCAACGAT 59.788 57.895 0.00 0.00 34.70 3.73
175 176 1.071019 CTCCGACGACACCAACGATG 61.071 60.000 0.00 0.00 34.70 3.84
176 177 1.372499 CCGACGACACCAACGATGT 60.372 57.895 0.00 0.00 34.70 3.06
177 178 0.942410 CCGACGACACCAACGATGTT 60.942 55.000 0.00 0.00 34.70 2.71
178 179 0.160813 CGACGACACCAACGATGTTG 59.839 55.000 2.74 2.74 37.46 3.33
179 180 0.110823 GACGACACCAACGATGTTGC 60.111 55.000 4.18 0.00 35.20 4.17
180 181 1.154672 CGACACCAACGATGTTGCG 60.155 57.895 4.18 0.00 37.29 4.85
181 182 1.440353 GACACCAACGATGTTGCGC 60.440 57.895 0.00 0.00 33.86 6.09
182 183 2.111932 GACACCAACGATGTTGCGCA 62.112 55.000 5.66 5.66 33.86 6.09
183 184 1.440850 CACCAACGATGTTGCGCAG 60.441 57.895 11.31 0.00 33.86 5.18
184 185 1.891919 ACCAACGATGTTGCGCAGT 60.892 52.632 11.31 0.76 33.86 4.40
185 186 1.440850 CCAACGATGTTGCGCAGTG 60.441 57.895 11.31 2.36 33.86 3.66
186 187 1.569003 CAACGATGTTGCGCAGTGA 59.431 52.632 11.31 0.00 33.86 3.41
187 188 0.722469 CAACGATGTTGCGCAGTGAC 60.722 55.000 11.31 7.03 33.86 3.67
188 189 2.094539 CGATGTTGCGCAGTGACG 59.905 61.111 11.31 12.17 0.00 4.35
189 190 2.657757 CGATGTTGCGCAGTGACGT 61.658 57.895 11.31 7.80 34.88 4.34
190 191 1.130613 GATGTTGCGCAGTGACGTC 59.869 57.895 11.31 13.66 34.88 4.34
191 192 1.284982 GATGTTGCGCAGTGACGTCT 61.285 55.000 20.52 3.51 34.88 4.18
192 193 0.880278 ATGTTGCGCAGTGACGTCTT 60.880 50.000 17.92 1.92 34.88 3.01
193 194 1.087202 TGTTGCGCAGTGACGTCTTT 61.087 50.000 17.92 1.52 34.88 2.52
194 195 0.654472 GTTGCGCAGTGACGTCTTTG 60.654 55.000 17.92 15.23 34.88 2.77
195 196 2.127609 GCGCAGTGACGTCTTTGC 60.128 61.111 25.19 25.19 34.88 3.68
196 197 2.881266 GCGCAGTGACGTCTTTGCA 61.881 57.895 30.19 7.57 36.37 4.08
197 198 1.641140 CGCAGTGACGTCTTTGCAA 59.359 52.632 30.19 0.00 36.37 4.08
198 199 0.654472 CGCAGTGACGTCTTTGCAAC 60.654 55.000 30.19 16.29 36.37 4.17
199 200 0.654472 GCAGTGACGTCTTTGCAACG 60.654 55.000 28.06 7.83 45.37 4.10
204 205 3.902234 CGTCTTTGCAACGTTGGC 58.098 55.556 28.33 20.25 35.47 4.52
205 206 2.003443 CGTCTTTGCAACGTTGGCG 61.003 57.895 28.33 12.57 44.93 5.69
206 207 1.353804 GTCTTTGCAACGTTGGCGA 59.646 52.632 28.33 17.38 42.00 5.54
207 208 0.040425 GTCTTTGCAACGTTGGCGAT 60.040 50.000 28.33 0.00 42.00 4.58
208 209 0.040514 TCTTTGCAACGTTGGCGATG 60.041 50.000 28.33 19.85 42.60 3.84
212 213 4.942090 CAACGTTGGCGATGCTTT 57.058 50.000 20.71 0.00 42.00 3.51
213 214 2.423202 CAACGTTGGCGATGCTTTG 58.577 52.632 20.71 0.00 42.00 2.77
214 215 1.371635 AACGTTGGCGATGCTTTGC 60.372 52.632 0.00 3.17 42.00 3.68
215 216 1.795170 AACGTTGGCGATGCTTTGCT 61.795 50.000 11.33 0.00 42.00 3.91
216 217 1.512734 CGTTGGCGATGCTTTGCTC 60.513 57.895 11.33 3.20 41.33 4.26
217 218 1.512734 GTTGGCGATGCTTTGCTCG 60.513 57.895 11.33 1.09 37.92 5.03
272 273 1.762708 ACATAGACCATTTTGCGGGG 58.237 50.000 0.00 0.00 0.00 5.73
273 274 1.283613 ACATAGACCATTTTGCGGGGA 59.716 47.619 0.00 0.00 0.00 4.81
274 275 2.291282 ACATAGACCATTTTGCGGGGAA 60.291 45.455 0.00 0.00 0.00 3.97
278 279 2.578664 CATTTTGCGGGGAAGGGC 59.421 61.111 0.00 0.00 0.00 5.19
286 287 4.798682 GGGGAAGGGCGGAGGAGA 62.799 72.222 0.00 0.00 0.00 3.71
287 288 2.446802 GGGAAGGGCGGAGGAGAT 60.447 66.667 0.00 0.00 0.00 2.75
298 299 2.587522 CGGAGGAGATGACATAGTCCA 58.412 52.381 15.58 0.00 0.00 4.02
307 308 5.366460 AGATGACATAGTCCATCTTGCAAG 58.634 41.667 20.81 20.81 31.58 4.01
311 312 1.965414 TAGTCCATCTTGCAAGGGGA 58.035 50.000 26.85 26.85 0.00 4.81
315 316 1.026718 CCATCTTGCAAGGGGACGAC 61.027 60.000 25.73 0.00 0.00 4.34
324 325 1.203994 CAAGGGGACGACGACTATTGT 59.796 52.381 0.00 0.00 0.00 2.71
330 331 4.202090 GGGGACGACGACTATTGTCTAATT 60.202 45.833 0.00 0.00 40.86 1.40
335 336 5.510674 ACGACGACTATTGTCTAATTCAACG 59.489 40.000 0.00 0.00 40.86 4.10
340 341 7.977853 ACGACTATTGTCTAATTCAACGGTTAT 59.022 33.333 5.76 0.00 40.86 1.89
358 359 5.303589 CGGTTATGAAAGGATAGACCCTACA 59.696 44.000 0.00 0.00 40.05 2.74
367 368 1.180029 TAGACCCTACAACCAGCGAC 58.820 55.000 0.00 0.00 0.00 5.19
369 370 1.535687 ACCCTACAACCAGCGACCT 60.536 57.895 0.00 0.00 0.00 3.85
370 371 1.218316 CCCTACAACCAGCGACCTC 59.782 63.158 0.00 0.00 0.00 3.85
423 424 1.150827 GTACCGCGGGCCATTTATAC 58.849 55.000 31.76 16.02 0.00 1.47
439 440 8.778358 GCCATTTATACTTACAGATTCAGAAGG 58.222 37.037 0.00 0.00 0.00 3.46
545 554 3.565902 AGCTCGAAGACCTTTTCCAAAAG 59.434 43.478 4.99 4.99 43.82 2.27
567 577 6.641169 AGTAAAAGAGCTTGGAGAAAAAGG 57.359 37.500 0.00 0.00 0.00 3.11
576 586 5.050490 GCTTGGAGAAAAAGGGAAGAAAAC 58.950 41.667 0.00 0.00 0.00 2.43
705 721 4.500116 GCTCCCTCGCCACGACTC 62.500 72.222 0.00 0.00 0.00 3.36
888 904 4.754667 GTGGCCCCGACGTTCCTC 62.755 72.222 0.00 0.00 0.00 3.71
891 907 4.790861 GCCCCGACGTTCCTCGAC 62.791 72.222 0.00 0.00 42.86 4.20
896 912 2.202453 GACGTTCCTCGACGCCTC 60.202 66.667 0.00 0.00 46.47 4.70
897 913 3.680338 GACGTTCCTCGACGCCTCC 62.680 68.421 0.00 0.00 46.47 4.30
977 993 4.253257 CGAGGCCGCGAGAGGTAC 62.253 72.222 25.87 0.00 0.00 3.34
978 994 3.902086 GAGGCCGCGAGAGGTACC 61.902 72.222 8.23 2.73 0.00 3.34
979 995 4.753662 AGGCCGCGAGAGGTACCA 62.754 66.667 15.94 0.00 0.00 3.25
980 996 4.509737 GGCCGCGAGAGGTACCAC 62.510 72.222 15.94 8.18 0.00 4.16
981 997 4.509737 GCCGCGAGAGGTACCACC 62.510 72.222 15.94 5.38 38.99 4.61
983 999 3.437795 CGCGAGAGGTACCACCGT 61.438 66.667 15.94 0.00 44.90 4.83
984 1000 2.968206 GCGAGAGGTACCACCGTT 59.032 61.111 15.94 0.00 44.90 4.44
985 1001 1.153881 GCGAGAGGTACCACCGTTC 60.154 63.158 15.94 1.91 44.90 3.95
986 1002 1.136147 CGAGAGGTACCACCGTTCG 59.864 63.158 15.94 9.74 44.90 3.95
988 1004 1.941999 GAGAGGTACCACCGTTCGGG 61.942 65.000 15.94 4.73 44.90 5.14
989 1005 2.999063 AGGTACCACCGTTCGGGG 60.999 66.667 15.94 11.40 44.90 5.73
1235 1270 3.726517 CTTGCTTGGACCGTGCCG 61.727 66.667 6.14 0.00 0.00 5.69
1486 1521 4.907010 TGCATCGACATTGTTTTCGTTTAC 59.093 37.500 0.00 0.00 36.60 2.01
1530 1565 4.114659 GCATTTGCTATGAGGATACGCCT 61.115 47.826 3.92 0.00 44.02 5.52
1531 1566 5.574357 GCATTTGCTATGAGGATACGCCTT 61.574 45.833 3.92 0.00 42.35 4.35
1544 1579 1.247567 ACGCCTTGGGATTTTGACTG 58.752 50.000 0.00 0.00 0.00 3.51
1556 1591 6.183361 TGGGATTTTGACTGTTGACTAGAGAA 60.183 38.462 0.00 0.00 0.00 2.87
1581 1616 6.094603 ACCTGTAAACAGAATGAGATTGCATC 59.905 38.462 11.69 0.00 46.59 3.91
1582 1617 6.318144 CCTGTAAACAGAATGAGATTGCATCT 59.682 38.462 11.69 0.00 46.59 2.90
1583 1618 7.496920 CCTGTAAACAGAATGAGATTGCATCTA 59.503 37.037 11.69 0.00 46.59 1.98
1584 1619 8.201554 TGTAAACAGAATGAGATTGCATCTAC 57.798 34.615 0.00 0.00 40.38 2.59
1585 1620 7.823799 TGTAAACAGAATGAGATTGCATCTACA 59.176 33.333 0.00 0.00 40.38 2.74
1712 1755 9.667107 TGTAGTCCTACAATATTTCTTTCCTTG 57.333 33.333 4.71 0.00 42.49 3.61
1724 1767 7.681939 ATTTCTTTCCTTGTCGCATTAACTA 57.318 32.000 0.00 0.00 0.00 2.24
1821 1864 0.803380 GTTGCGAATTGGCTGCATCC 60.803 55.000 13.84 0.00 38.60 3.51
1949 1992 4.025040 TGAAGTTGAGGAAGTGCATGAT 57.975 40.909 0.00 0.00 0.00 2.45
2156 2199 2.079925 GGAGAATGTCACTTGTCTGCC 58.920 52.381 0.00 0.00 0.00 4.85
2157 2200 2.550855 GGAGAATGTCACTTGTCTGCCA 60.551 50.000 0.00 0.00 0.00 4.92
2167 2220 1.670811 CTTGTCTGCCAGTTGTTCGTT 59.329 47.619 0.00 0.00 0.00 3.85
2174 2227 2.946329 TGCCAGTTGTTCGTTACATGTT 59.054 40.909 2.30 0.00 36.44 2.71
2263 2316 1.085501 GCAATTTGCAGGAATGGCCG 61.086 55.000 16.35 0.00 44.26 6.13
2467 2520 2.911636 TCCAAGTTCCCCACGGTAATAA 59.088 45.455 0.00 0.00 0.00 1.40
2468 2521 3.011818 CCAAGTTCCCCACGGTAATAAC 58.988 50.000 0.00 0.00 0.00 1.89
2500 2553 7.972832 TGGTTTACTTCCTTTATGTACAGTG 57.027 36.000 0.33 0.00 0.00 3.66
2603 2662 6.976934 GGAGAGATCAAATCCTTCTCTACT 57.023 41.667 4.50 0.00 44.71 2.57
2794 2853 0.883833 GTGTGGATTTCCCTGCTGTG 59.116 55.000 0.00 0.00 35.38 3.66
3075 3160 9.503399 AAAACAGAAGAAGGAAAACGACTATAT 57.497 29.630 0.00 0.00 0.00 0.86
3158 3243 1.272092 ACTGCATGTGCCACCAGTAAT 60.272 47.619 3.77 0.00 41.18 1.89
3420 3505 7.563556 TCTTTTCAGTTTCCCACTTTTTATCCT 59.436 33.333 0.00 0.00 30.92 3.24
3427 3512 8.713971 AGTTTCCCACTTTTTATCCTGATTTTT 58.286 29.630 0.00 0.00 27.32 1.94
3633 3720 6.773976 TTTTTCAAGATCAGTTTGTGGACT 57.226 33.333 0.00 0.00 0.00 3.85
3664 3751 7.436673 GCCACTATCTATATTTCGCTATCCAAG 59.563 40.741 0.00 0.00 0.00 3.61
3683 3770 1.727511 GCACACTGGCACTTTGCTGA 61.728 55.000 0.00 0.00 44.28 4.26
3720 3807 3.870419 TGAAAATGAACTTTGTGGCTTGC 59.130 39.130 0.00 0.00 0.00 4.01
3909 3996 7.262048 TGTTATTTTTCAGTTGGGTTGACTTC 58.738 34.615 0.00 0.00 0.00 3.01
4197 4285 0.543749 CAGGGGTAGCAAGGGAAGAG 59.456 60.000 0.00 0.00 0.00 2.85
4619 4707 7.167924 TGATCCAATATGCTGATCTCTAGTC 57.832 40.000 0.00 0.00 36.65 2.59
4637 4725 7.839705 TCTCTAGTCCAATTGGTAGTAGATGTT 59.160 37.037 25.60 8.71 32.29 2.71
4810 4901 5.762179 TTGAACTGGGTCTGTATGAGAAT 57.238 39.130 0.00 0.00 30.26 2.40
4877 4968 9.553418 CAACAGATTCTATCTACATGATACTCG 57.447 37.037 0.00 0.00 37.58 4.18
4882 4973 7.987750 TTCTATCTACATGATACTCGCTCTT 57.012 36.000 0.00 0.00 36.65 2.85
4883 4974 9.674068 ATTCTATCTACATGATACTCGCTCTTA 57.326 33.333 0.00 0.00 36.65 2.10
4884 4975 9.674068 TTCTATCTACATGATACTCGCTCTTAT 57.326 33.333 0.00 0.00 36.65 1.73
4902 5006 6.869388 GCTCTTATATTTCTTAACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
5001 5105 7.115520 CGAGATCATCATGGTTGTATTACTCAC 59.884 40.741 0.00 0.00 0.00 3.51
5198 5313 2.236395 TGAAGCCTGCCTCCTTAACTAC 59.764 50.000 0.00 0.00 0.00 2.73
5235 5433 6.580041 CCAGATTTGCTTATTATTTGCTAGCG 59.420 38.462 10.77 0.00 34.65 4.26
5476 5676 3.471680 GGATGGTGATGCTTACTTCCTC 58.528 50.000 0.00 0.00 0.00 3.71
5498 5698 3.874543 CGTTGTCCGATTATGGAATGGAA 59.125 43.478 0.00 0.00 40.44 3.53
5499 5699 4.260620 CGTTGTCCGATTATGGAATGGAAC 60.261 45.833 0.00 0.00 40.44 3.62
5500 5700 4.771114 TGTCCGATTATGGAATGGAACT 57.229 40.909 0.00 0.00 40.44 3.01
5501 5701 4.450976 TGTCCGATTATGGAATGGAACTG 58.549 43.478 0.00 0.00 40.44 3.16
5502 5702 3.815401 GTCCGATTATGGAATGGAACTGG 59.185 47.826 0.00 0.00 40.44 4.00
5503 5703 3.714280 TCCGATTATGGAATGGAACTGGA 59.286 43.478 0.00 0.00 34.30 3.86
5707 5916 1.416401 TCCAGTCTTCCTTTCGCAAGT 59.584 47.619 0.00 0.00 39.48 3.16
5789 6007 3.636764 GGATAAACCATGATTCGCCCTTT 59.363 43.478 0.00 0.00 38.79 3.11
5830 6049 3.785859 GCCGTCTGCCCCTCATGA 61.786 66.667 0.00 0.00 0.00 3.07
6012 6232 5.939883 CCATGTGAGATTTCCTGTTAACTGA 59.060 40.000 13.56 4.39 0.00 3.41
6051 6271 9.807649 GTAATCATGGTATTGCTTGATTTTCTT 57.192 29.630 0.00 0.00 39.07 2.52
6054 6275 5.659440 TGGTATTGCTTGATTTTCTTCCC 57.341 39.130 0.00 0.00 0.00 3.97
6057 6278 6.042552 TGGTATTGCTTGATTTTCTTCCCAAA 59.957 34.615 0.00 0.00 0.00 3.28
6096 6318 2.225727 GCCCGAAACTGTCCTGTAAAAG 59.774 50.000 0.00 0.00 0.00 2.27
6168 6392 2.222007 ATTCAGAGAGCGAGCACATC 57.778 50.000 0.00 0.00 0.00 3.06
6173 6397 1.146957 GAGAGCGAGCACATCAGCAG 61.147 60.000 0.00 0.00 36.85 4.24
6174 6398 1.447489 GAGCGAGCACATCAGCAGT 60.447 57.895 0.00 0.00 36.85 4.40
6175 6399 1.419874 GAGCGAGCACATCAGCAGTC 61.420 60.000 0.00 0.00 36.85 3.51
6176 6400 1.447489 GCGAGCACATCAGCAGTCT 60.447 57.895 0.00 0.00 36.85 3.24
6177 6401 1.018226 GCGAGCACATCAGCAGTCTT 61.018 55.000 0.00 0.00 36.85 3.01
6179 6403 1.128136 CGAGCACATCAGCAGTCTTTG 59.872 52.381 0.00 0.00 36.85 2.77
6180 6404 2.420642 GAGCACATCAGCAGTCTTTGA 58.579 47.619 0.00 0.00 36.85 2.69
6181 6405 2.149578 AGCACATCAGCAGTCTTTGAC 58.850 47.619 0.00 0.00 36.85 3.18
6201 6426 1.799181 CGCAGACGAATCGGATTGTCT 60.799 52.381 20.39 20.39 43.93 3.41
6224 6449 7.014230 GTCTCTACTATGAATCCTCAGCTTCTT 59.986 40.741 0.00 0.00 34.23 2.52
6225 6450 8.221251 TCTCTACTATGAATCCTCAGCTTCTTA 58.779 37.037 0.00 0.00 34.23 2.10
6226 6451 8.172352 TCTACTATGAATCCTCAGCTTCTTAC 57.828 38.462 0.00 0.00 34.23 2.34
6227 6452 8.001875 TCTACTATGAATCCTCAGCTTCTTACT 58.998 37.037 0.00 0.00 34.23 2.24
6228 6453 7.049799 ACTATGAATCCTCAGCTTCTTACTC 57.950 40.000 0.00 0.00 34.23 2.59
6229 6454 4.744795 TGAATCCTCAGCTTCTTACTCC 57.255 45.455 0.00 0.00 0.00 3.85
6230 6455 3.452627 TGAATCCTCAGCTTCTTACTCCC 59.547 47.826 0.00 0.00 0.00 4.30
6231 6456 2.930109 TCCTCAGCTTCTTACTCCCT 57.070 50.000 0.00 0.00 0.00 4.20
6232 6457 2.741145 TCCTCAGCTTCTTACTCCCTC 58.259 52.381 0.00 0.00 0.00 4.30
6233 6458 1.760029 CCTCAGCTTCTTACTCCCTCC 59.240 57.143 0.00 0.00 0.00 4.30
6234 6459 1.407258 CTCAGCTTCTTACTCCCTCCG 59.593 57.143 0.00 0.00 0.00 4.63
6235 6460 1.187087 CAGCTTCTTACTCCCTCCGT 58.813 55.000 0.00 0.00 0.00 4.69
6236 6461 1.135333 CAGCTTCTTACTCCCTCCGTC 59.865 57.143 0.00 0.00 0.00 4.79
6237 6462 0.460722 GCTTCTTACTCCCTCCGTCC 59.539 60.000 0.00 0.00 0.00 4.79
6238 6463 0.739561 CTTCTTACTCCCTCCGTCCG 59.260 60.000 0.00 0.00 0.00 4.79
6239 6464 0.329261 TTCTTACTCCCTCCGTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
6240 6465 0.329261 TCTTACTCCCTCCGTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
6241 6466 1.180029 CTTACTCCCTCCGTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
6242 6467 1.547372 CTTACTCCCTCCGTCCGAAAA 59.453 52.381 0.00 0.00 0.00 2.29
6243 6468 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
6262 6487 5.904362 AAAAACTTGTCTCAAGCTTGTCT 57.096 34.783 25.19 0.72 0.00 3.41
6263 6488 5.491635 AAAACTTGTCTCAAGCTTGTCTC 57.508 39.130 25.19 16.00 0.00 3.36
6264 6489 4.414337 AACTTGTCTCAAGCTTGTCTCT 57.586 40.909 25.19 1.20 0.00 3.10
6265 6490 3.988819 ACTTGTCTCAAGCTTGTCTCTC 58.011 45.455 25.19 12.90 0.00 3.20
6266 6491 3.386078 ACTTGTCTCAAGCTTGTCTCTCA 59.614 43.478 25.19 15.00 0.00 3.27
6267 6492 4.141846 ACTTGTCTCAAGCTTGTCTCTCAA 60.142 41.667 25.19 19.91 34.61 3.02
6268 6493 3.722147 TGTCTCAAGCTTGTCTCTCAAC 58.278 45.455 25.19 13.68 32.18 3.18
6269 6494 3.386078 TGTCTCAAGCTTGTCTCTCAACT 59.614 43.478 25.19 0.00 32.18 3.16
6270 6495 3.740321 GTCTCAAGCTTGTCTCTCAACTG 59.260 47.826 25.19 0.00 32.18 3.16
6271 6496 3.065655 CTCAAGCTTGTCTCTCAACTGG 58.934 50.000 25.19 0.00 32.18 4.00
6272 6497 2.700371 TCAAGCTTGTCTCTCAACTGGA 59.300 45.455 25.19 0.00 32.18 3.86
6273 6498 3.326006 TCAAGCTTGTCTCTCAACTGGAT 59.674 43.478 25.19 0.00 32.18 3.41
6274 6499 3.331478 AGCTTGTCTCTCAACTGGATG 57.669 47.619 0.00 0.00 32.18 3.51
6275 6500 2.636893 AGCTTGTCTCTCAACTGGATGT 59.363 45.455 0.00 0.00 32.18 3.06
6276 6501 3.834813 AGCTTGTCTCTCAACTGGATGTA 59.165 43.478 0.00 0.00 32.18 2.29
6277 6502 4.469227 AGCTTGTCTCTCAACTGGATGTAT 59.531 41.667 0.00 0.00 32.18 2.29
6278 6503 4.808364 GCTTGTCTCTCAACTGGATGTATC 59.192 45.833 0.00 0.00 32.18 2.24
6279 6504 5.395103 GCTTGTCTCTCAACTGGATGTATCT 60.395 44.000 0.00 0.00 32.18 1.98
6280 6505 6.183360 GCTTGTCTCTCAACTGGATGTATCTA 60.183 42.308 0.00 0.00 32.18 1.98
6281 6506 6.951062 TGTCTCTCAACTGGATGTATCTAG 57.049 41.667 3.98 3.98 40.74 2.43
6282 6507 5.300539 TGTCTCTCAACTGGATGTATCTAGC 59.699 44.000 5.29 0.00 38.79 3.42
6283 6508 5.300539 GTCTCTCAACTGGATGTATCTAGCA 59.699 44.000 5.29 0.00 38.79 3.49
6284 6509 6.015519 GTCTCTCAACTGGATGTATCTAGCAT 60.016 42.308 5.29 0.00 38.79 3.79
6285 6510 6.552725 TCTCTCAACTGGATGTATCTAGCATT 59.447 38.462 5.29 0.00 38.79 3.56
6286 6511 7.725844 TCTCTCAACTGGATGTATCTAGCATTA 59.274 37.037 5.29 0.00 38.79 1.90
6287 6512 8.250143 TCTCAACTGGATGTATCTAGCATTAA 57.750 34.615 5.29 0.00 38.79 1.40
6288 6513 8.144478 TCTCAACTGGATGTATCTAGCATTAAC 58.856 37.037 5.29 0.00 38.79 2.01
6289 6514 8.023021 TCAACTGGATGTATCTAGCATTAACT 57.977 34.615 5.29 0.00 38.79 2.24
6290 6515 8.486210 TCAACTGGATGTATCTAGCATTAACTT 58.514 33.333 5.29 0.00 38.79 2.66
6291 6516 8.554528 CAACTGGATGTATCTAGCATTAACTTG 58.445 37.037 5.29 0.00 38.79 3.16
6292 6517 7.220030 ACTGGATGTATCTAGCATTAACTTGG 58.780 38.462 5.29 0.00 38.79 3.61
6293 6518 7.136822 TGGATGTATCTAGCATTAACTTGGT 57.863 36.000 0.00 0.00 0.00 3.67
6294 6519 6.992123 TGGATGTATCTAGCATTAACTTGGTG 59.008 38.462 0.00 0.00 0.00 4.17
6295 6520 6.073003 GGATGTATCTAGCATTAACTTGGTGC 60.073 42.308 0.00 0.00 39.10 5.01
6297 6522 7.119709 TGTATCTAGCATTAACTTGGTGCTA 57.880 36.000 7.35 7.35 46.54 3.49
6303 6528 6.119144 AGCATTAACTTGGTGCTAAATACG 57.881 37.500 0.00 0.00 46.54 3.06
6304 6529 5.878116 AGCATTAACTTGGTGCTAAATACGA 59.122 36.000 0.00 0.00 46.54 3.43
6305 6530 6.037172 AGCATTAACTTGGTGCTAAATACGAG 59.963 38.462 0.00 0.00 46.54 4.18
6306 6531 6.183360 GCATTAACTTGGTGCTAAATACGAGT 60.183 38.462 0.00 0.00 36.02 4.18
6307 6532 7.625606 GCATTAACTTGGTGCTAAATACGAGTT 60.626 37.037 0.00 0.00 36.02 3.01
6308 6533 7.733402 TTAACTTGGTGCTAAATACGAGTTT 57.267 32.000 0.00 0.00 31.79 2.66
6309 6534 6.628919 AACTTGGTGCTAAATACGAGTTTT 57.371 33.333 0.00 0.00 0.00 2.43
6310 6535 6.628919 ACTTGGTGCTAAATACGAGTTTTT 57.371 33.333 0.00 0.00 0.00 1.94
6311 6536 6.665465 ACTTGGTGCTAAATACGAGTTTTTC 58.335 36.000 0.00 0.00 0.00 2.29
6312 6537 5.616488 TGGTGCTAAATACGAGTTTTTCC 57.384 39.130 0.00 0.00 0.00 3.13
6313 6538 4.152759 TGGTGCTAAATACGAGTTTTTCCG 59.847 41.667 0.00 0.00 0.00 4.30
6314 6539 4.436451 GGTGCTAAATACGAGTTTTTCCGG 60.436 45.833 0.00 0.00 0.00 5.14
6315 6540 4.389687 GTGCTAAATACGAGTTTTTCCGGA 59.610 41.667 0.00 0.00 0.00 5.14
6316 6541 4.389687 TGCTAAATACGAGTTTTTCCGGAC 59.610 41.667 1.83 0.00 0.00 4.79
6317 6542 4.491441 GCTAAATACGAGTTTTTCCGGACG 60.491 45.833 1.83 5.89 0.00 4.79
6318 6543 2.000429 ATACGAGTTTTTCCGGACGG 58.000 50.000 1.83 3.96 0.00 4.79
6319 6544 0.958091 TACGAGTTTTTCCGGACGGA 59.042 50.000 1.83 9.76 43.52 4.69
6320 6545 0.319297 ACGAGTTTTTCCGGACGGAG 60.319 55.000 13.64 3.15 46.06 4.63
6321 6546 1.012486 CGAGTTTTTCCGGACGGAGG 61.012 60.000 13.64 0.00 46.06 4.30
6322 6547 0.672711 GAGTTTTTCCGGACGGAGGG 60.673 60.000 13.64 0.00 46.06 4.30
6323 6548 1.123246 AGTTTTTCCGGACGGAGGGA 61.123 55.000 13.64 1.83 46.06 4.20
6324 6549 0.672711 GTTTTTCCGGACGGAGGGAG 60.673 60.000 13.64 0.00 46.06 4.30
6367 6592 1.134521 TCCTCATCGAACCATTTCCCG 60.135 52.381 0.00 0.00 0.00 5.14
6369 6594 1.933853 CTCATCGAACCATTTCCCGTC 59.066 52.381 0.00 0.00 0.00 4.79
6449 6674 0.892755 AGTCACGGATCGCCACTTAA 59.107 50.000 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.313812 ACCGCCCACGTTGTTGAAAA 61.314 50.000 0.00 0.00 37.70 2.29
1 2 1.749638 ACCGCCCACGTTGTTGAAA 60.750 52.632 0.00 0.00 37.70 2.69
2 3 2.124653 ACCGCCCACGTTGTTGAA 60.125 55.556 0.00 0.00 37.70 2.69
3 4 2.897846 CACCGCCCACGTTGTTGA 60.898 61.111 0.00 0.00 37.70 3.18
4 5 3.206246 ACACCGCCCACGTTGTTG 61.206 61.111 0.00 0.00 42.85 3.33
7 8 2.184167 AGAAACACCGCCCACGTTG 61.184 57.895 0.00 0.00 37.76 4.10
8 9 2.184167 CAGAAACACCGCCCACGTT 61.184 57.895 0.00 0.00 37.70 3.99
9 10 2.590575 CAGAAACACCGCCCACGT 60.591 61.111 0.00 0.00 37.70 4.49
10 11 4.025401 GCAGAAACACCGCCCACG 62.025 66.667 0.00 0.00 39.67 4.94
11 12 2.594592 AGCAGAAACACCGCCCAC 60.595 61.111 0.00 0.00 0.00 4.61
12 13 2.594303 CAGCAGAAACACCGCCCA 60.594 61.111 0.00 0.00 0.00 5.36
13 14 4.043200 GCAGCAGAAACACCGCCC 62.043 66.667 0.00 0.00 0.00 6.13
14 15 4.389576 CGCAGCAGAAACACCGCC 62.390 66.667 0.00 0.00 0.00 6.13
15 16 3.579626 GACGCAGCAGAAACACCGC 62.580 63.158 0.00 0.00 0.00 5.68
16 17 1.568612 ATGACGCAGCAGAAACACCG 61.569 55.000 0.00 0.00 0.00 4.94
17 18 0.166814 GATGACGCAGCAGAAACACC 59.833 55.000 0.00 0.00 0.00 4.16
18 19 0.179240 CGATGACGCAGCAGAAACAC 60.179 55.000 0.00 0.00 0.00 3.32
19 20 1.291184 CCGATGACGCAGCAGAAACA 61.291 55.000 0.00 0.00 38.29 2.83
20 21 1.421485 CCGATGACGCAGCAGAAAC 59.579 57.895 0.00 0.00 38.29 2.78
21 22 1.741401 CCCGATGACGCAGCAGAAA 60.741 57.895 0.00 0.00 38.29 2.52
22 23 2.125552 CCCGATGACGCAGCAGAA 60.126 61.111 0.00 0.00 38.29 3.02
23 24 4.147449 CCCCGATGACGCAGCAGA 62.147 66.667 0.00 0.00 38.29 4.26
24 25 3.958147 AACCCCGATGACGCAGCAG 62.958 63.158 0.00 0.00 38.29 4.24
25 26 4.015406 AACCCCGATGACGCAGCA 62.015 61.111 0.00 0.00 38.29 4.41
26 27 3.499737 CAACCCCGATGACGCAGC 61.500 66.667 0.00 0.00 38.29 5.25
27 28 3.499737 GCAACCCCGATGACGCAG 61.500 66.667 0.00 0.00 38.29 5.18
30 31 3.186047 GTCGCAACCCCGATGACG 61.186 66.667 0.00 0.00 39.67 4.35
31 32 1.375523 AAGTCGCAACCCCGATGAC 60.376 57.895 0.00 0.00 39.67 3.06
32 33 1.375396 CAAGTCGCAACCCCGATGA 60.375 57.895 0.00 0.00 39.67 2.92
33 34 3.039202 GCAAGTCGCAACCCCGATG 62.039 63.158 0.00 0.00 41.79 3.84
34 35 2.746277 GCAAGTCGCAACCCCGAT 60.746 61.111 0.00 0.00 41.79 4.18
37 38 3.723348 GTCGCAAGTCGCAACCCC 61.723 66.667 0.00 0.00 42.60 4.95
38 39 3.723348 GGTCGCAAGTCGCAACCC 61.723 66.667 0.00 0.00 42.60 4.11
39 40 1.852067 AATGGTCGCAAGTCGCAACC 61.852 55.000 0.00 0.00 42.60 3.77
40 41 0.793861 TAATGGTCGCAAGTCGCAAC 59.206 50.000 0.00 0.00 42.60 4.17
41 42 0.793861 GTAATGGTCGCAAGTCGCAA 59.206 50.000 0.00 0.00 42.60 4.85
42 43 0.319986 TGTAATGGTCGCAAGTCGCA 60.320 50.000 0.00 0.00 42.60 5.10
43 44 1.006832 ATGTAATGGTCGCAAGTCGC 58.993 50.000 0.00 0.00 38.27 5.19
44 45 2.415168 ACAATGTAATGGTCGCAAGTCG 59.585 45.455 0.00 0.00 40.15 4.18
45 46 4.003519 GACAATGTAATGGTCGCAAGTC 57.996 45.455 0.00 0.00 37.56 3.01
52 53 4.000988 ACAAGACCGACAATGTAATGGTC 58.999 43.478 18.53 18.53 44.08 4.02
53 54 4.015872 ACAAGACCGACAATGTAATGGT 57.984 40.909 4.40 4.40 28.60 3.55
54 55 5.163794 GGTTACAAGACCGACAATGTAATGG 60.164 44.000 0.00 0.00 39.58 3.16
55 56 5.410132 TGGTTACAAGACCGACAATGTAATG 59.590 40.000 0.00 0.00 42.83 1.90
56 57 5.553123 TGGTTACAAGACCGACAATGTAAT 58.447 37.500 0.00 0.00 42.83 1.89
57 58 4.958509 TGGTTACAAGACCGACAATGTAA 58.041 39.130 0.00 0.00 42.83 2.41
58 59 4.603989 TGGTTACAAGACCGACAATGTA 57.396 40.909 0.00 0.00 42.83 2.29
59 60 3.478857 TGGTTACAAGACCGACAATGT 57.521 42.857 0.00 0.00 42.83 2.71
60 61 4.000325 TCATGGTTACAAGACCGACAATG 59.000 43.478 0.00 0.00 42.83 2.82
61 62 4.000988 GTCATGGTTACAAGACCGACAAT 58.999 43.478 0.00 0.00 42.83 2.71
62 63 3.181464 TGTCATGGTTACAAGACCGACAA 60.181 43.478 0.00 0.00 42.92 3.18
63 64 2.365941 TGTCATGGTTACAAGACCGACA 59.634 45.455 0.00 0.00 42.92 4.35
64 65 2.993899 CTGTCATGGTTACAAGACCGAC 59.006 50.000 0.00 0.00 42.92 4.79
65 66 2.611971 GCTGTCATGGTTACAAGACCGA 60.612 50.000 0.00 0.00 42.92 4.69
66 67 1.732259 GCTGTCATGGTTACAAGACCG 59.268 52.381 0.00 0.00 42.92 4.79
67 68 2.778299 TGCTGTCATGGTTACAAGACC 58.222 47.619 0.00 0.00 42.92 3.85
68 69 4.216257 ACATTGCTGTCATGGTTACAAGAC 59.784 41.667 0.00 0.00 43.63 3.01
69 70 4.216042 CACATTGCTGTCATGGTTACAAGA 59.784 41.667 0.00 0.00 31.62 3.02
70 71 4.478699 CACATTGCTGTCATGGTTACAAG 58.521 43.478 0.00 0.00 31.62 3.16
71 72 3.255395 CCACATTGCTGTCATGGTTACAA 59.745 43.478 0.00 0.00 31.62 2.41
72 73 2.819019 CCACATTGCTGTCATGGTTACA 59.181 45.455 0.00 0.00 31.62 2.41
73 74 2.164219 CCCACATTGCTGTCATGGTTAC 59.836 50.000 0.00 0.00 31.62 2.50
74 75 2.224992 ACCCACATTGCTGTCATGGTTA 60.225 45.455 0.00 0.00 31.62 2.85
75 76 1.259609 CCCACATTGCTGTCATGGTT 58.740 50.000 0.00 0.00 31.62 3.67
76 77 0.112995 ACCCACATTGCTGTCATGGT 59.887 50.000 0.00 0.00 31.62 3.55
77 78 0.528924 CACCCACATTGCTGTCATGG 59.471 55.000 0.00 0.00 31.62 3.66
78 79 0.528924 CCACCCACATTGCTGTCATG 59.471 55.000 0.00 0.00 31.62 3.07
79 80 0.112995 ACCACCCACATTGCTGTCAT 59.887 50.000 0.00 0.00 31.62 3.06
80 81 0.822944 CACCACCCACATTGCTGTCA 60.823 55.000 0.00 0.00 31.62 3.58
81 82 0.823356 ACACCACCCACATTGCTGTC 60.823 55.000 0.00 0.00 31.62 3.51
82 83 0.396974 AACACCACCCACATTGCTGT 60.397 50.000 0.00 0.00 35.44 4.40
83 84 0.752054 AAACACCACCCACATTGCTG 59.248 50.000 0.00 0.00 0.00 4.41
84 85 1.494960 AAAACACCACCCACATTGCT 58.505 45.000 0.00 0.00 0.00 3.91
85 86 2.209273 GAAAAACACCACCCACATTGC 58.791 47.619 0.00 0.00 0.00 3.56
86 87 3.194062 GTGAAAAACACCACCCACATTG 58.806 45.455 0.00 0.00 43.05 2.82
87 88 3.535280 GTGAAAAACACCACCCACATT 57.465 42.857 0.00 0.00 43.05 2.71
95 96 8.353282 CATCAGGGATGTTGTGAAAAACACCA 62.353 42.308 0.00 0.00 42.56 4.17
96 97 6.021885 CATCAGGGATGTTGTGAAAAACACC 61.022 44.000 0.00 0.00 42.56 4.16
97 98 4.984161 CATCAGGGATGTTGTGAAAAACAC 59.016 41.667 0.00 0.00 42.56 3.32
98 99 5.199024 CATCAGGGATGTTGTGAAAAACA 57.801 39.130 0.00 0.00 43.82 2.83
110 111 1.592669 GGTCGCGACATCAGGGATG 60.593 63.158 37.26 4.74 44.71 3.51
111 112 1.402896 ATGGTCGCGACATCAGGGAT 61.403 55.000 37.26 15.49 33.22 3.85
112 113 2.016393 GATGGTCGCGACATCAGGGA 62.016 60.000 37.26 14.00 43.21 4.20
113 114 1.592669 GATGGTCGCGACATCAGGG 60.593 63.158 37.26 0.00 43.21 4.45
114 115 1.141665 TGATGGTCGCGACATCAGG 59.858 57.895 37.26 0.00 46.99 3.86
115 116 4.812814 TGATGGTCGCGACATCAG 57.187 55.556 37.26 0.00 46.99 2.90
117 118 1.004610 CAATGTGATGGTCGCGACATC 60.005 52.381 37.26 32.29 43.82 3.06
118 119 1.009078 CAATGTGATGGTCGCGACAT 58.991 50.000 37.26 27.59 0.00 3.06
119 120 1.634757 GCAATGTGATGGTCGCGACA 61.635 55.000 37.26 24.47 0.00 4.35
120 121 1.060937 GCAATGTGATGGTCGCGAC 59.939 57.895 30.67 30.67 0.00 5.19
121 122 0.673333 AAGCAATGTGATGGTCGCGA 60.673 50.000 3.71 3.71 0.00 5.87
122 123 0.521867 CAAGCAATGTGATGGTCGCG 60.522 55.000 0.00 0.00 0.00 5.87
123 124 0.523072 ACAAGCAATGTGATGGTCGC 59.477 50.000 0.00 0.00 41.93 5.19
136 137 4.810730 GCAGTTGCAACACAAGCA 57.189 50.000 30.11 0.00 39.50 3.91
146 147 1.954146 TCGTCGGAGTTGCAGTTGC 60.954 57.895 0.00 0.00 42.50 4.17
147 148 0.874175 TGTCGTCGGAGTTGCAGTTG 60.874 55.000 0.00 0.00 0.00 3.16
148 149 0.874607 GTGTCGTCGGAGTTGCAGTT 60.875 55.000 0.00 0.00 0.00 3.16
149 150 1.299926 GTGTCGTCGGAGTTGCAGT 60.300 57.895 0.00 0.00 0.00 4.40
150 151 2.022129 GGTGTCGTCGGAGTTGCAG 61.022 63.158 0.00 0.00 0.00 4.41
151 152 2.028484 GGTGTCGTCGGAGTTGCA 59.972 61.111 0.00 0.00 0.00 4.08
152 153 1.593209 TTGGTGTCGTCGGAGTTGC 60.593 57.895 0.00 0.00 0.00 4.17
153 154 1.545614 CGTTGGTGTCGTCGGAGTTG 61.546 60.000 0.00 0.00 0.00 3.16
154 155 1.299620 CGTTGGTGTCGTCGGAGTT 60.300 57.895 0.00 0.00 0.00 3.01
155 156 1.521450 ATCGTTGGTGTCGTCGGAGT 61.521 55.000 0.00 0.00 0.00 3.85
156 157 1.071019 CATCGTTGGTGTCGTCGGAG 61.071 60.000 0.00 0.00 0.00 4.63
157 158 1.081041 CATCGTTGGTGTCGTCGGA 60.081 57.895 0.00 0.00 0.00 4.55
158 159 0.942410 AACATCGTTGGTGTCGTCGG 60.942 55.000 0.00 0.00 0.00 4.79
159 160 0.160813 CAACATCGTTGGTGTCGTCG 59.839 55.000 3.25 0.00 35.73 5.12
160 161 0.110823 GCAACATCGTTGGTGTCGTC 60.111 55.000 12.84 0.00 42.86 4.20
161 162 1.827315 CGCAACATCGTTGGTGTCGT 61.827 55.000 12.84 0.00 42.86 4.34
162 163 1.154672 CGCAACATCGTTGGTGTCG 60.155 57.895 12.84 12.25 42.86 4.35
163 164 1.440353 GCGCAACATCGTTGGTGTC 60.440 57.895 12.84 4.94 42.86 3.67
164 165 2.116736 CTGCGCAACATCGTTGGTGT 62.117 55.000 13.05 0.00 42.86 4.16
165 166 1.440850 CTGCGCAACATCGTTGGTG 60.441 57.895 13.05 7.17 43.81 4.17
166 167 1.891919 ACTGCGCAACATCGTTGGT 60.892 52.632 13.05 0.00 0.00 3.67
167 168 1.440850 CACTGCGCAACATCGTTGG 60.441 57.895 13.05 0.00 0.00 3.77
168 169 0.722469 GTCACTGCGCAACATCGTTG 60.722 55.000 13.05 0.00 0.00 4.10
169 170 1.569493 GTCACTGCGCAACATCGTT 59.431 52.632 13.05 0.00 0.00 3.85
170 171 2.657757 CGTCACTGCGCAACATCGT 61.658 57.895 13.05 1.60 0.00 3.73
171 172 2.094539 CGTCACTGCGCAACATCG 59.905 61.111 13.05 10.81 0.00 3.84
172 173 1.130613 GACGTCACTGCGCAACATC 59.869 57.895 13.05 0.30 34.88 3.06
173 174 0.880278 AAGACGTCACTGCGCAACAT 60.880 50.000 19.50 0.00 34.88 2.71
174 175 1.087202 AAAGACGTCACTGCGCAACA 61.087 50.000 19.50 0.00 34.88 3.33
175 176 0.654472 CAAAGACGTCACTGCGCAAC 60.654 55.000 19.50 6.02 34.88 4.17
176 177 1.641140 CAAAGACGTCACTGCGCAA 59.359 52.632 19.50 0.00 34.88 4.85
177 178 2.881266 GCAAAGACGTCACTGCGCA 61.881 57.895 21.36 10.98 34.88 6.09
178 179 2.127609 GCAAAGACGTCACTGCGC 60.128 61.111 21.36 0.00 34.88 6.09
179 180 0.654472 GTTGCAAAGACGTCACTGCG 60.654 55.000 26.75 10.53 37.62 5.18
180 181 0.654472 CGTTGCAAAGACGTCACTGC 60.654 55.000 26.28 26.28 35.88 4.40
181 182 3.420968 CGTTGCAAAGACGTCACTG 57.579 52.632 19.50 14.86 35.88 3.66
187 188 2.003443 CGCCAACGTTGCAAAGACG 61.003 57.895 22.93 13.55 45.46 4.18
188 189 0.040425 ATCGCCAACGTTGCAAAGAC 60.040 50.000 22.93 6.23 41.18 3.01
189 190 0.040514 CATCGCCAACGTTGCAAAGA 60.041 50.000 22.93 16.97 41.18 2.52
190 191 2.423202 CATCGCCAACGTTGCAAAG 58.577 52.632 22.93 11.02 41.18 2.77
191 192 4.624293 CATCGCCAACGTTGCAAA 57.376 50.000 22.93 9.73 41.18 3.68
195 196 1.608093 GCAAAGCATCGCCAACGTTG 61.608 55.000 21.47 21.47 41.02 4.10
196 197 1.371635 GCAAAGCATCGCCAACGTT 60.372 52.632 0.00 0.00 41.18 3.99
197 198 2.187599 GAGCAAAGCATCGCCAACGT 62.188 55.000 0.00 0.00 41.18 3.99
198 199 1.512734 GAGCAAAGCATCGCCAACG 60.513 57.895 0.00 0.00 42.01 4.10
199 200 1.512734 CGAGCAAAGCATCGCCAAC 60.513 57.895 0.00 0.00 31.42 3.77
200 201 2.869646 CGAGCAAAGCATCGCCAA 59.130 55.556 0.00 0.00 31.42 4.52
204 205 1.061799 GTGTTGCGAGCAAAGCATCG 61.062 55.000 12.41 0.00 44.74 3.84
205 206 0.040157 TGTGTTGCGAGCAAAGCATC 60.040 50.000 12.41 0.44 44.74 3.91
206 207 0.599558 ATGTGTTGCGAGCAAAGCAT 59.400 45.000 12.41 15.16 44.74 3.79
207 208 0.318022 CATGTGTTGCGAGCAAAGCA 60.318 50.000 12.41 13.68 43.59 3.91
208 209 1.611592 GCATGTGTTGCGAGCAAAGC 61.612 55.000 12.41 8.69 42.54 3.51
209 210 2.427360 GCATGTGTTGCGAGCAAAG 58.573 52.632 12.41 2.27 42.54 2.77
210 211 4.632037 GCATGTGTTGCGAGCAAA 57.368 50.000 12.41 0.00 42.54 3.68
219 220 0.597568 CCCACAACATCGCATGTGTT 59.402 50.000 6.09 0.00 44.07 3.32
220 221 1.243342 CCCCACAACATCGCATGTGT 61.243 55.000 6.09 0.00 44.07 3.72
228 229 3.124921 CGTCGCCCCCACAACATC 61.125 66.667 0.00 0.00 0.00 3.06
255 256 2.654863 CTTCCCCGCAAAATGGTCTAT 58.345 47.619 0.00 0.00 0.00 1.98
272 273 1.330655 TGTCATCTCCTCCGCCCTTC 61.331 60.000 0.00 0.00 0.00 3.46
273 274 0.692419 ATGTCATCTCCTCCGCCCTT 60.692 55.000 0.00 0.00 0.00 3.95
274 275 0.188587 TATGTCATCTCCTCCGCCCT 59.811 55.000 0.00 0.00 0.00 5.19
278 279 2.587522 TGGACTATGTCATCTCCTCCG 58.412 52.381 9.76 0.00 33.68 4.63
281 282 4.040217 GCAAGATGGACTATGTCATCTCCT 59.960 45.833 6.33 0.00 33.13 3.69
284 285 5.363562 TTGCAAGATGGACTATGTCATCT 57.636 39.130 0.00 0.00 34.49 2.90
286 287 4.458397 CCTTGCAAGATGGACTATGTCAT 58.542 43.478 28.05 0.00 33.68 3.06
287 288 3.370846 CCCTTGCAAGATGGACTATGTCA 60.371 47.826 28.05 0.00 33.68 3.58
298 299 1.079127 CGTCGTCCCCTTGCAAGAT 60.079 57.895 28.05 0.00 0.00 2.40
307 308 3.637297 GACAATAGTCGTCGTCCCC 57.363 57.895 0.00 0.00 34.60 4.81
324 325 9.542462 CTATCCTTTCATAACCGTTGAATTAGA 57.458 33.333 0.00 0.00 33.37 2.10
330 331 5.395990 GGGTCTATCCTTTCATAACCGTTGA 60.396 44.000 0.00 0.00 36.25 3.18
335 336 6.742559 TGTAGGGTCTATCCTTTCATAACC 57.257 41.667 0.00 0.00 38.30 2.85
340 341 4.431378 TGGTTGTAGGGTCTATCCTTTCA 58.569 43.478 0.00 0.00 38.30 2.69
344 345 2.399580 GCTGGTTGTAGGGTCTATCCT 58.600 52.381 0.00 0.00 40.79 3.24
358 359 0.892755 TATTGACGAGGTCGCTGGTT 59.107 50.000 0.00 0.00 44.43 3.67
367 368 6.554419 TGATCTTTTGCAAATATTGACGAGG 58.446 36.000 13.65 0.00 0.00 4.63
369 370 6.029607 GCTGATCTTTTGCAAATATTGACGA 58.970 36.000 13.65 2.17 0.00 4.20
370 371 5.052829 CGCTGATCTTTTGCAAATATTGACG 60.053 40.000 13.65 8.39 0.00 4.35
407 408 1.802365 GTAAGTATAAATGGCCCGCGG 59.198 52.381 21.04 21.04 0.00 6.46
411 412 7.224297 TCTGAATCTGTAAGTATAAATGGCCC 58.776 38.462 0.00 0.00 33.76 5.80
423 424 4.440880 CCTCTGCCTTCTGAATCTGTAAG 58.559 47.826 0.00 0.00 0.00 2.34
439 440 2.911484 ACTAGCTTGTATTGCCTCTGC 58.089 47.619 0.00 0.00 38.26 4.26
513 522 9.699703 GAAAAGGTCTTCGAGCTCTATATAATT 57.300 33.333 12.85 0.00 39.62 1.40
514 523 8.308207 GGAAAAGGTCTTCGAGCTCTATATAAT 58.692 37.037 12.85 0.00 39.62 1.28
515 524 7.287005 TGGAAAAGGTCTTCGAGCTCTATATAA 59.713 37.037 12.85 0.00 39.62 0.98
516 525 6.776116 TGGAAAAGGTCTTCGAGCTCTATATA 59.224 38.462 12.85 0.00 39.62 0.86
522 531 2.457366 TGGAAAAGGTCTTCGAGCTC 57.543 50.000 2.73 2.73 39.62 4.09
545 554 5.535030 TCCCTTTTTCTCCAAGCTCTTTTAC 59.465 40.000 0.00 0.00 0.00 2.01
567 577 5.529581 TGGTGATTTTCCAGTTTTCTTCC 57.470 39.130 0.00 0.00 0.00 3.46
871 887 4.754667 GAGGAACGTCGGGGCCAC 62.755 72.222 4.39 0.00 0.00 5.01
880 896 3.745803 GGAGGCGTCGAGGAACGT 61.746 66.667 9.75 0.00 44.38 3.99
881 897 4.493747 GGGAGGCGTCGAGGAACG 62.494 72.222 9.75 0.00 45.31 3.95
961 977 3.902086 GGTACCTCTCGCGGCCTC 61.902 72.222 6.13 0.00 0.00 4.70
968 984 1.136147 CGAACGGTGGTACCTCTCG 59.864 63.158 14.36 16.42 35.66 4.04
970 986 1.980772 CCCGAACGGTGGTACCTCT 60.981 63.158 14.36 0.00 35.66 3.69
1486 1521 0.250640 ACAAGCAGAGCCAGACAAGG 60.251 55.000 0.00 0.00 0.00 3.61
1530 1565 5.935945 TCTAGTCAACAGTCAAAATCCCAA 58.064 37.500 0.00 0.00 0.00 4.12
1531 1566 5.306937 TCTCTAGTCAACAGTCAAAATCCCA 59.693 40.000 0.00 0.00 0.00 4.37
1544 1579 6.746120 TCTGTTTACAGGTTCTCTAGTCAAC 58.254 40.000 9.82 0.00 43.91 3.18
1556 1591 5.316167 TGCAATCTCATTCTGTTTACAGGT 58.684 37.500 9.82 0.00 43.91 4.00
1712 1755 7.869016 TGATATACAGCTTAGTTAATGCGAC 57.131 36.000 0.00 0.00 0.00 5.19
1821 1864 2.336554 AAGCTAAACGCAGCATTGTG 57.663 45.000 6.98 0.00 44.35 3.33
2023 2066 8.533657 TGGAAGAAAAATATTGAATGACTGCAT 58.466 29.630 0.00 0.00 35.92 3.96
2061 2104 2.239654 CCACATCCCACTCCTACACAAT 59.760 50.000 0.00 0.00 0.00 2.71
2117 2160 1.445066 ACAGACGCACGCATCTCAG 60.445 57.895 0.00 0.00 0.00 3.35
2156 2199 4.772434 CCAGAACATGTAACGAACAACTG 58.228 43.478 0.00 0.00 42.70 3.16
2157 2200 3.250040 GCCAGAACATGTAACGAACAACT 59.750 43.478 0.00 0.00 42.70 3.16
2167 2220 2.302733 TCTGCTTGAGCCAGAACATGTA 59.697 45.455 0.00 0.00 41.18 2.29
2174 2227 1.189752 CCTAGTCTGCTTGAGCCAGA 58.810 55.000 0.00 1.37 41.18 3.86
2230 2283 4.586334 GCAAATTGCAACACATTTCGTTT 58.414 34.783 13.73 0.00 44.26 3.60
2263 2316 1.008079 GCTGCAAGGCAACAGACAC 60.008 57.895 5.72 0.00 38.41 3.67
2343 2396 1.449601 CGTCACTACACCCATGCCC 60.450 63.158 0.00 0.00 0.00 5.36
2467 2520 2.644798 AGGAAGTAAACCATCAGCCAGT 59.355 45.455 0.00 0.00 0.00 4.00
2468 2521 3.356529 AGGAAGTAAACCATCAGCCAG 57.643 47.619 0.00 0.00 0.00 4.85
2500 2553 1.028868 GCAACAGTGATCCTGCCTCC 61.029 60.000 0.00 0.00 45.68 4.30
2875 2960 7.182761 GCGTCATTAAATACCTGCATGATATC 58.817 38.462 0.00 0.00 0.00 1.63
2911 2996 7.996098 TCATTTTCCTGTAAGAAACCCTTAG 57.004 36.000 0.00 0.00 37.98 2.18
3158 3243 2.881513 TGCTGCGTTGAGGATACAAAAA 59.118 40.909 0.00 0.00 41.41 1.94
3368 3453 3.378339 ACGACGTTGTTGGAGTTAAGAG 58.622 45.455 1.48 0.00 0.00 2.85
3371 3456 3.929417 CAACGACGTTGTTGGAGTTAA 57.071 42.857 32.44 0.00 44.27 2.01
3420 3505 8.994429 TTAAAGTCTCAAAACAGCAAAAATCA 57.006 26.923 0.00 0.00 0.00 2.57
3427 3512 6.942532 ACATCTTAAAGTCTCAAAACAGCA 57.057 33.333 0.00 0.00 0.00 4.41
3628 3715 7.559335 AATATAGATAGTGGCATTCAGTCCA 57.441 36.000 0.00 0.00 0.00 4.02
3633 3720 6.701340 AGCGAAATATAGATAGTGGCATTCA 58.299 36.000 0.00 0.00 0.00 2.57
3664 3751 1.299620 CAGCAAAGTGCCAGTGTGC 60.300 57.895 6.58 6.58 46.52 4.57
3909 3996 8.559536 AGTGTTGAACAGTTGAACATTAGTATG 58.440 33.333 19.55 0.00 37.79 2.39
4197 4285 4.614284 GCATGCGCATTCACATAGTTAATC 59.386 41.667 22.81 0.00 38.36 1.75
4366 4454 2.703536 TGTTGAGTTCACCCTTAGCTGA 59.296 45.455 0.00 0.00 0.00 4.26
4482 4570 8.822805 AGTTCTGTCCAAGTAATAGGATAAACA 58.177 33.333 0.00 0.00 36.11 2.83
4619 4707 7.921786 TCTTTCAACATCTACTACCAATTGG 57.078 36.000 23.31 23.31 42.17 3.16
4637 4725 9.598517 AAATACAAAGCTTCATGTTTTCTTTCA 57.401 25.926 8.99 0.00 0.00 2.69
4877 4968 6.756221 TCCCTCCGTTAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4882 4973 9.289782 GTAGTACTCCCTCCGTTAAGAAATATA 57.710 37.037 0.00 0.00 0.00 0.86
4883 4974 8.003629 AGTAGTACTCCCTCCGTTAAGAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
4884 4975 7.349598 AGTAGTACTCCCTCCGTTAAGAAATA 58.650 38.462 0.00 0.00 0.00 1.40
4886 4977 5.574188 AGTAGTACTCCCTCCGTTAAGAAA 58.426 41.667 0.00 0.00 0.00 2.52
4887 4978 5.184892 AGTAGTACTCCCTCCGTTAAGAA 57.815 43.478 0.00 0.00 0.00 2.52
4891 4995 5.574188 AGAAAAGTAGTACTCCCTCCGTTA 58.426 41.667 2.58 0.00 0.00 3.18
4902 5006 6.929606 TCAGAAAAGCTGGAGAAAAGTAGTAC 59.070 38.462 0.00 0.00 44.98 2.73
5001 5105 7.275341 TGCAATGAACAACAGAACAAAAAGTAG 59.725 33.333 0.00 0.00 0.00 2.57
5198 5313 1.826720 CAAATCTGGTGGGGGTCAATG 59.173 52.381 0.00 0.00 0.00 2.82
5476 5676 3.462982 TCCATTCCATAATCGGACAACG 58.537 45.455 0.00 0.00 46.11 4.10
5498 5698 2.127708 AGTTCCAGTTCCAGTTCCAGT 58.872 47.619 0.00 0.00 0.00 4.00
5499 5699 2.498167 CAGTTCCAGTTCCAGTTCCAG 58.502 52.381 0.00 0.00 0.00 3.86
5500 5700 1.476833 GCAGTTCCAGTTCCAGTTCCA 60.477 52.381 0.00 0.00 0.00 3.53
5501 5701 1.239347 GCAGTTCCAGTTCCAGTTCC 58.761 55.000 0.00 0.00 0.00 3.62
5502 5702 1.967319 TGCAGTTCCAGTTCCAGTTC 58.033 50.000 0.00 0.00 0.00 3.01
5503 5703 2.664402 ATGCAGTTCCAGTTCCAGTT 57.336 45.000 0.00 0.00 0.00 3.16
5707 5916 3.264193 AGGCTACACCACATGATTCTTCA 59.736 43.478 0.00 0.00 43.14 3.02
5789 6007 2.825532 GTTGAAAAATAGCAGGCCCAGA 59.174 45.455 0.00 0.00 0.00 3.86
5802 6020 0.306533 GCAGACGGCGAGTTGAAAAA 59.693 50.000 16.62 0.00 0.00 1.94
5830 6049 2.711547 ACCAAACCTAGGAAAGAGCACT 59.288 45.455 17.98 0.00 0.00 4.40
6096 6318 2.294233 TGTTTCAATGTGCCTGAGCTTC 59.706 45.455 0.00 0.00 40.80 3.86
6168 6392 0.510359 GTCTGCGTCAAAGACTGCTG 59.490 55.000 12.47 11.93 40.77 4.41
6173 6397 1.057847 CGATTCGTCTGCGTCAAAGAC 59.942 52.381 0.00 0.00 40.59 3.01
6174 6398 1.336877 CGATTCGTCTGCGTCAAAGA 58.663 50.000 0.00 0.00 39.49 2.52
6175 6399 0.366871 CCGATTCGTCTGCGTCAAAG 59.633 55.000 5.20 0.00 39.49 2.77
6176 6400 0.038983 TCCGATTCGTCTGCGTCAAA 60.039 50.000 5.20 0.00 39.49 2.69
6177 6401 0.172578 ATCCGATTCGTCTGCGTCAA 59.827 50.000 5.20 0.00 39.49 3.18
6179 6403 0.572590 CAATCCGATTCGTCTGCGTC 59.427 55.000 5.20 0.00 39.49 5.19
6180 6404 0.108804 ACAATCCGATTCGTCTGCGT 60.109 50.000 5.20 0.00 39.49 5.24
6181 6405 0.572590 GACAATCCGATTCGTCTGCG 59.427 55.000 5.20 0.00 39.92 5.18
6201 6426 8.001875 AGTAAGAAGCTGAGGATTCATAGTAGA 58.998 37.037 0.00 0.00 39.98 2.59
6224 6449 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
6225 6450 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
6240 6465 5.649831 AGAGACAAGCTTGAGACAAGTTTTT 59.350 36.000 32.50 5.43 0.00 1.94
6241 6466 5.189180 AGAGACAAGCTTGAGACAAGTTTT 58.811 37.500 32.50 5.99 0.00 2.43
6242 6467 4.775236 AGAGACAAGCTTGAGACAAGTTT 58.225 39.130 32.50 6.80 0.00 2.66
6243 6468 4.141846 TGAGAGACAAGCTTGAGACAAGTT 60.142 41.667 32.50 7.60 0.00 2.66
6244 6469 3.386078 TGAGAGACAAGCTTGAGACAAGT 59.614 43.478 32.50 8.41 0.00 3.16
6245 6470 3.987547 TGAGAGACAAGCTTGAGACAAG 58.012 45.455 32.50 4.70 0.00 3.16
6246 6471 4.122776 GTTGAGAGACAAGCTTGAGACAA 58.877 43.478 32.50 23.06 39.30 3.18
6247 6472 3.386078 AGTTGAGAGACAAGCTTGAGACA 59.614 43.478 32.50 19.34 39.30 3.41
6248 6473 3.740321 CAGTTGAGAGACAAGCTTGAGAC 59.260 47.826 32.50 20.78 39.30 3.36
6249 6474 3.244009 CCAGTTGAGAGACAAGCTTGAGA 60.244 47.826 32.50 6.59 39.30 3.27
6250 6475 3.065655 CCAGTTGAGAGACAAGCTTGAG 58.934 50.000 32.50 7.94 39.30 3.02
6251 6476 2.700371 TCCAGTTGAGAGACAAGCTTGA 59.300 45.455 32.50 6.30 39.30 3.02
6252 6477 3.117491 TCCAGTTGAGAGACAAGCTTG 57.883 47.619 24.84 24.84 39.30 4.01
6253 6478 3.072184 ACATCCAGTTGAGAGACAAGCTT 59.928 43.478 0.00 0.00 39.30 3.74
6254 6479 2.636893 ACATCCAGTTGAGAGACAAGCT 59.363 45.455 0.00 0.00 39.30 3.74
6255 6480 3.051081 ACATCCAGTTGAGAGACAAGC 57.949 47.619 0.00 0.00 39.30 4.01
6256 6481 6.219417 AGATACATCCAGTTGAGAGACAAG 57.781 41.667 0.00 0.00 39.30 3.16
6257 6482 6.183360 GCTAGATACATCCAGTTGAGAGACAA 60.183 42.308 0.00 0.00 36.02 3.18
6258 6483 5.300539 GCTAGATACATCCAGTTGAGAGACA 59.699 44.000 0.00 0.00 0.00 3.41
6259 6484 5.300539 TGCTAGATACATCCAGTTGAGAGAC 59.699 44.000 0.00 0.00 0.00 3.36
6260 6485 5.449553 TGCTAGATACATCCAGTTGAGAGA 58.550 41.667 0.00 0.00 0.00 3.10
6261 6486 5.781210 TGCTAGATACATCCAGTTGAGAG 57.219 43.478 0.00 0.00 0.00 3.20
6262 6487 6.737720 AATGCTAGATACATCCAGTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
6263 6488 8.147058 AGTTAATGCTAGATACATCCAGTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
6264 6489 8.023021 AGTTAATGCTAGATACATCCAGTTGA 57.977 34.615 0.00 0.00 0.00 3.18
6265 6490 8.554528 CAAGTTAATGCTAGATACATCCAGTTG 58.445 37.037 0.00 0.00 0.00 3.16
6266 6491 7.716998 CCAAGTTAATGCTAGATACATCCAGTT 59.283 37.037 0.00 0.00 0.00 3.16
6267 6492 7.147479 ACCAAGTTAATGCTAGATACATCCAGT 60.147 37.037 0.00 0.00 0.00 4.00
6268 6493 7.172190 CACCAAGTTAATGCTAGATACATCCAG 59.828 40.741 0.00 0.00 0.00 3.86
6269 6494 6.992123 CACCAAGTTAATGCTAGATACATCCA 59.008 38.462 0.00 0.00 0.00 3.41
6270 6495 6.073003 GCACCAAGTTAATGCTAGATACATCC 60.073 42.308 0.00 0.00 36.40 3.51
6271 6496 6.892691 GCACCAAGTTAATGCTAGATACATC 58.107 40.000 0.00 0.00 36.40 3.06
6272 6497 6.867662 GCACCAAGTTAATGCTAGATACAT 57.132 37.500 0.00 0.00 36.40 2.29
6281 6506 6.114221 TCGTATTTAGCACCAAGTTAATGC 57.886 37.500 2.91 2.91 39.74 3.56
6282 6507 7.303634 ACTCGTATTTAGCACCAAGTTAATG 57.696 36.000 0.00 0.00 0.00 1.90
6283 6508 7.916914 AACTCGTATTTAGCACCAAGTTAAT 57.083 32.000 0.00 0.00 0.00 1.40
6284 6509 7.733402 AAACTCGTATTTAGCACCAAGTTAA 57.267 32.000 0.00 0.00 0.00 2.01
6285 6510 7.733402 AAAACTCGTATTTAGCACCAAGTTA 57.267 32.000 0.00 0.00 0.00 2.24
6286 6511 6.628919 AAAACTCGTATTTAGCACCAAGTT 57.371 33.333 0.00 0.00 0.00 2.66
6287 6512 6.293790 GGAAAAACTCGTATTTAGCACCAAGT 60.294 38.462 0.00 0.00 0.00 3.16
6288 6513 6.084277 GGAAAAACTCGTATTTAGCACCAAG 58.916 40.000 0.00 0.00 0.00 3.61
6289 6514 5.334260 CGGAAAAACTCGTATTTAGCACCAA 60.334 40.000 0.00 0.00 0.00 3.67
6290 6515 4.152759 CGGAAAAACTCGTATTTAGCACCA 59.847 41.667 0.00 0.00 0.00 4.17
6291 6516 4.436451 CCGGAAAAACTCGTATTTAGCACC 60.436 45.833 0.00 0.00 0.00 5.01
6292 6517 4.389687 TCCGGAAAAACTCGTATTTAGCAC 59.610 41.667 0.00 0.00 0.00 4.40
6293 6518 4.389687 GTCCGGAAAAACTCGTATTTAGCA 59.610 41.667 5.23 0.00 0.00 3.49
6294 6519 4.491441 CGTCCGGAAAAACTCGTATTTAGC 60.491 45.833 5.23 0.00 0.00 3.09
6295 6520 4.032104 CCGTCCGGAAAAACTCGTATTTAG 59.968 45.833 5.23 0.00 37.50 1.85
6296 6521 3.925913 CCGTCCGGAAAAACTCGTATTTA 59.074 43.478 5.23 0.00 37.50 1.40
6297 6522 2.738314 CCGTCCGGAAAAACTCGTATTT 59.262 45.455 5.23 0.00 37.50 1.40
6298 6523 2.029110 TCCGTCCGGAAAAACTCGTATT 60.029 45.455 5.23 0.00 42.05 1.89
6299 6524 1.545582 TCCGTCCGGAAAAACTCGTAT 59.454 47.619 5.23 0.00 42.05 3.06
6300 6525 0.958091 TCCGTCCGGAAAAACTCGTA 59.042 50.000 5.23 0.00 42.05 3.43
6301 6526 0.319297 CTCCGTCCGGAAAAACTCGT 60.319 55.000 5.23 0.00 44.66 4.18
6302 6527 1.012486 CCTCCGTCCGGAAAAACTCG 61.012 60.000 5.23 3.90 44.66 4.18
6303 6528 0.672711 CCCTCCGTCCGGAAAAACTC 60.673 60.000 5.23 0.00 44.66 3.01
6304 6529 1.123246 TCCCTCCGTCCGGAAAAACT 61.123 55.000 5.23 0.00 44.66 2.66
6305 6530 0.672711 CTCCCTCCGTCCGGAAAAAC 60.673 60.000 5.23 0.00 44.66 2.43
6306 6531 1.123246 ACTCCCTCCGTCCGGAAAAA 61.123 55.000 5.23 0.00 44.66 1.94
6307 6532 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
6308 6533 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
6309 6534 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
6310 6535 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
6311 6536 0.828677 AAAATACTCCCTCCGTCCGG 59.171 55.000 0.00 0.00 0.00 5.14
6312 6537 1.755380 AGAAAATACTCCCTCCGTCCG 59.245 52.381 0.00 0.00 0.00 4.79
6313 6538 4.202233 CCTTAGAAAATACTCCCTCCGTCC 60.202 50.000 0.00 0.00 0.00 4.79
6314 6539 4.648307 TCCTTAGAAAATACTCCCTCCGTC 59.352 45.833 0.00 0.00 0.00 4.79
6315 6540 4.617593 TCCTTAGAAAATACTCCCTCCGT 58.382 43.478 0.00 0.00 0.00 4.69
6316 6541 5.609533 TTCCTTAGAAAATACTCCCTCCG 57.390 43.478 0.00 0.00 0.00 4.63
6342 6567 1.900351 TGGTTCGATGAGGAGCCAG 59.100 57.895 0.00 0.00 41.63 4.85
6367 6592 1.414158 TGGAGATCGAAGGATGGGAC 58.586 55.000 0.00 0.00 31.51 4.46
6369 6594 1.610102 GCATGGAGATCGAAGGATGGG 60.610 57.143 0.00 0.00 31.51 4.00
6405 6630 5.259832 TGCAAAATGTGTTCAAGTGATCA 57.740 34.783 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.