Multiple sequence alignment - TraesCS2D01G175600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G175600 chr2D 100.000 7000 0 0 1 7000 119072896 119065897 0.000000e+00 12927.0
1 TraesCS2D01G175600 chr2D 89.235 1059 66 15 2094 3134 31032624 31033652 0.000000e+00 1280.0
2 TraesCS2D01G175600 chr2D 87.377 507 32 9 3206 3692 31038187 31038681 2.850000e-153 553.0
3 TraesCS2D01G175600 chr2D 87.805 123 14 1 523 645 119071610 119071731 7.320000e-30 143.0
4 TraesCS2D01G175600 chr2D 87.805 123 14 1 1166 1287 119072252 119072374 7.320000e-30 143.0
5 TraesCS2D01G175600 chr2A 95.452 4859 151 38 2094 6928 121145239 121140427 0.000000e+00 7685.0
6 TraesCS2D01G175600 chr2A 90.461 1258 80 16 2094 3331 33321190 33319953 0.000000e+00 1622.0
7 TraesCS2D01G175600 chr2A 90.333 600 35 10 1517 2096 121146078 121145482 0.000000e+00 765.0
8 TraesCS2D01G175600 chr2A 79.242 501 53 27 18 509 121146755 121146297 1.140000e-77 302.0
9 TraesCS2D01G175600 chr2B 95.456 4732 152 31 2094 6792 171034338 171029637 0.000000e+00 7489.0
10 TraesCS2D01G175600 chr2B 87.500 944 47 18 2407 3331 51138021 51138912 0.000000e+00 1024.0
11 TraesCS2D01G175600 chr2B 91.606 548 25 5 1567 2093 171035136 171034589 0.000000e+00 737.0
12 TraesCS2D01G175600 chr2B 81.603 549 32 17 12 523 171036025 171035509 2.370000e-104 390.0
13 TraesCS2D01G175600 chr2B 90.526 285 22 2 2094 2377 51137747 51138027 8.580000e-99 372.0
14 TraesCS2D01G175600 chr2B 84.289 401 35 9 1288 1672 171035516 171035128 3.990000e-97 366.0
15 TraesCS2D01G175600 chr2B 83.412 211 28 3 6627 6831 326569807 326569598 9.270000e-44 189.0
16 TraesCS2D01G175600 chr2B 94.048 84 4 1 6917 7000 387105612 387105694 7.370000e-25 126.0
17 TraesCS2D01G175600 chr3D 98.560 764 9 2 524 1286 332328406 332327644 0.000000e+00 1349.0
18 TraesCS2D01G175600 chr3D 88.525 122 13 1 1166 1286 332328285 332328406 5.660000e-31 147.0
19 TraesCS2D01G175600 chr3D 98.684 76 1 0 6925 7000 369986804 369986729 1.220000e-27 135.0
20 TraesCS2D01G175600 chr3D 85.827 127 16 2 520 645 332327639 332327764 4.400000e-27 134.0
21 TraesCS2D01G175600 chr3D 97.403 77 2 0 6924 7000 337959626 337959550 1.580000e-26 132.0
22 TraesCS2D01G175600 chr3D 86.139 101 13 1 532 631 34726206 34726306 2.670000e-19 108.0
23 TraesCS2D01G175600 chr7A 77.339 1571 274 61 3754 5273 19005277 19006816 0.000000e+00 854.0
24 TraesCS2D01G175600 chr7A 82.317 328 58 0 4946 5273 115205148 115204821 1.150000e-72 285.0
25 TraesCS2D01G175600 chr7A 90.270 185 18 0 2638 2822 19004467 19004651 7.010000e-60 243.0
26 TraesCS2D01G175600 chr7A 77.000 400 70 15 2158 2540 19003950 19004344 7.110000e-50 209.0
27 TraesCS2D01G175600 chr7A 83.951 162 20 3 1130 1286 340169622 340169462 4.370000e-32 150.0
28 TraesCS2D01G175600 chr7A 79.079 239 33 8 6582 6812 352599538 352599309 1.570000e-31 148.0
29 TraesCS2D01G175600 chr7A 83.230 161 21 3 1131 1286 338119298 338119139 7.320000e-30 143.0
30 TraesCS2D01G175600 chr7A 86.000 100 13 1 524 623 338119139 338119237 9.600000e-19 106.0
31 TraesCS2D01G175600 chr7A 86.000 100 13 1 524 623 340169462 340169560 9.600000e-19 106.0
32 TraesCS2D01G175600 chr4A 87.621 412 43 5 523 928 538879343 538878934 8.220000e-129 472.0
33 TraesCS2D01G175600 chr4A 78.608 388 67 13 2166 2540 714179712 714179328 7.010000e-60 243.0
34 TraesCS2D01G175600 chr4A 93.151 73 5 0 925 997 538870402 538870330 2.670000e-19 108.0
35 TraesCS2D01G175600 chr6B 84.901 404 21 19 2935 3331 591930091 591929721 8.580000e-99 372.0
36 TraesCS2D01G175600 chr6B 97.403 77 2 0 6924 7000 256326812 256326736 1.580000e-26 132.0
37 TraesCS2D01G175600 chr6B 100.000 31 0 0 6582 6612 579486967 579486937 2.730000e-04 58.4
38 TraesCS2D01G175600 chr7B 82.927 328 56 0 4946 5273 68345433 68345106 5.310000e-76 296.0
39 TraesCS2D01G175600 chr7B 97.403 77 2 0 6924 7000 167627854 167627778 1.580000e-26 132.0
40 TraesCS2D01G175600 chr7B 95.238 84 3 1 6917 7000 290001043 290000961 1.580000e-26 132.0
41 TraesCS2D01G175600 chr7D 78.261 391 65 14 2166 2540 18680318 18680704 4.220000e-57 233.0
42 TraesCS2D01G175600 chr5B 83.871 155 20 3 1110 1260 400546021 400545868 7.320000e-30 143.0
43 TraesCS2D01G175600 chr1A 80.978 184 27 5 1110 1288 566631345 566631165 9.470000e-29 139.0
44 TraesCS2D01G175600 chr3B 87.395 119 14 1 1169 1287 57427165 57427282 1.220000e-27 135.0
45 TraesCS2D01G175600 chr3B 97.403 77 2 0 6924 7000 64700497 64700421 1.580000e-26 132.0
46 TraesCS2D01G175600 chr3B 85.714 105 14 1 521 625 57427284 57427181 7.420000e-20 110.0
47 TraesCS2D01G175600 chr4B 88.288 111 11 2 1177 1287 457879315 457879423 1.580000e-26 132.0
48 TraesCS2D01G175600 chr4B 85.294 102 14 1 530 631 457879417 457879317 3.450000e-18 104.0
49 TraesCS2D01G175600 chr3A 97.403 77 2 0 6924 7000 455781653 455781577 1.580000e-26 132.0
50 TraesCS2D01G175600 chr3A 96.250 80 3 0 6921 7000 720680768 720680689 1.580000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G175600 chr2D 119065897 119072896 6999 True 12927.000000 12927 100.000000 1 7000 1 chr2D.!!$R1 6999
1 TraesCS2D01G175600 chr2D 31032624 31033652 1028 False 1280.000000 1280 89.235000 2094 3134 1 chr2D.!!$F1 1040
2 TraesCS2D01G175600 chr2A 121140427 121146755 6328 True 2917.333333 7685 88.342333 18 6928 3 chr2A.!!$R2 6910
3 TraesCS2D01G175600 chr2A 33319953 33321190 1237 True 1622.000000 1622 90.461000 2094 3331 1 chr2A.!!$R1 1237
4 TraesCS2D01G175600 chr2B 171029637 171036025 6388 True 2245.500000 7489 88.238500 12 6792 4 chr2B.!!$R2 6780
5 TraesCS2D01G175600 chr2B 51137747 51138912 1165 False 698.000000 1024 89.013000 2094 3331 2 chr2B.!!$F2 1237
6 TraesCS2D01G175600 chr3D 332327644 332328406 762 True 1349.000000 1349 98.560000 524 1286 1 chr3D.!!$R1 762
7 TraesCS2D01G175600 chr7A 19003950 19006816 2866 False 435.333333 854 81.536333 2158 5273 3 chr7A.!!$F3 3115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 303 0.036388 TTGGGTCAGGCTTGTCGATC 60.036 55.000 0.00 0.0 0.00 3.69 F
1014 1060 0.179034 AGCCGATGCAATTCTCCCTC 60.179 55.000 0.00 0.0 41.13 4.30 F
1914 2142 0.400213 TGCCGTTCAGGTTTGAGGAT 59.600 50.000 0.00 0.0 43.70 3.24 F
2779 3408 0.537188 ACAAGGAGAGCATGTACCCG 59.463 55.000 0.00 0.0 0.00 5.28 F
3078 3722 4.038282 TGCCCTGATGATATGTGCATTTTC 59.962 41.667 0.00 0.0 0.00 2.29 F
4276 4973 1.191535 ACAGCGATGGCAACCTAGTA 58.808 50.000 5.32 0.0 43.41 1.82 F
4306 5003 1.302192 GGCGCACAAGTTGGGAGTA 60.302 57.895 9.97 0.0 40.70 2.59 F
5216 5946 1.344438 TCTGCTCAGATGAACCGTGTT 59.656 47.619 0.00 0.0 31.41 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 2123 0.400213 ATCCTCAAACCTGAACGGCA 59.600 50.000 0.00 0.00 35.61 5.69 R
2779 3408 0.110644 CGCGAAGGAAGTTGAGCAAC 60.111 55.000 0.00 5.24 41.45 4.17 R
3264 3913 0.109342 CCTGAGTGCACCTTGGAGTT 59.891 55.000 14.63 0.00 0.00 3.01 R
4276 4973 1.300080 GTGCGCCAACAAACATGCT 60.300 52.632 4.18 0.00 0.00 3.79 R
4291 4988 2.846193 TGAGTTACTCCCAACTTGTGC 58.154 47.619 10.10 0.00 38.86 4.57 R
5216 5946 0.175760 GGTAGAGCTCACCATTGCGA 59.824 55.000 22.75 0.00 36.01 5.10 R
5475 6205 1.518572 GATGTGGTAGCCGGACACG 60.519 63.158 5.05 0.00 37.92 4.49 R
6928 7677 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.377333 CCTTGTTTCTCGCCCTCCC 60.377 63.158 0.00 0.00 0.00 4.30
78 79 2.093764 CTCCTCTGGAGCAAGGTAACTG 60.094 54.545 0.27 0.00 45.67 3.16
79 80 5.250679 CTCCTCTGGAGCAAGGTAACTGG 62.251 56.522 0.27 0.00 45.67 4.00
97 122 3.508793 ACTGGACATGGCTTCTTTTCATG 59.491 43.478 0.00 0.00 42.65 3.07
104 129 5.047802 ACATGGCTTCTTTTCATGGTACTTG 60.048 40.000 0.00 0.00 41.64 3.16
128 163 1.792115 TAGTATGGGTACGGTTGGGG 58.208 55.000 0.00 0.00 35.92 4.96
130 165 2.376987 TATGGGTACGGTTGGGGCC 61.377 63.158 0.00 0.00 0.00 5.80
173 208 5.234466 AGCCTAGTTTCAGTGATTCAAGT 57.766 39.130 0.00 0.00 0.00 3.16
184 219 1.202794 TGATTCAAGTGAGGTGCTGCA 60.203 47.619 0.00 0.00 0.00 4.41
185 220 2.089980 GATTCAAGTGAGGTGCTGCAT 58.910 47.619 5.27 0.00 0.00 3.96
186 221 1.241165 TTCAAGTGAGGTGCTGCATG 58.759 50.000 5.27 0.00 0.00 4.06
187 222 1.211969 CAAGTGAGGTGCTGCATGC 59.788 57.895 11.82 11.82 43.25 4.06
197 232 0.452987 TGCTGCATGCGAAATTCTCC 59.547 50.000 14.09 0.00 46.63 3.71
203 238 3.623060 TGCATGCGAAATTCTCCTTCTAC 59.377 43.478 14.09 0.00 0.00 2.59
227 262 3.422796 TCTTCAGCTTAGGTTCGAGAGT 58.577 45.455 0.00 0.00 0.00 3.24
264 299 1.692411 AAGTTTGGGTCAGGCTTGTC 58.308 50.000 0.00 0.00 0.00 3.18
268 303 0.036388 TTGGGTCAGGCTTGTCGATC 60.036 55.000 0.00 0.00 0.00 3.69
276 311 1.474077 AGGCTTGTCGATCAATTTGGC 59.526 47.619 0.00 0.00 35.35 4.52
277 312 1.474077 GGCTTGTCGATCAATTTGGCT 59.526 47.619 0.00 0.00 35.35 4.75
282 317 5.452078 TTGTCGATCAATTTGGCTTTCTT 57.548 34.783 0.00 0.00 0.00 2.52
298 333 2.672651 TTGGTCCCTGCATGCACG 60.673 61.111 18.46 13.32 0.00 5.34
301 336 3.136123 GTCCCTGCATGCACGCAT 61.136 61.111 18.46 0.00 42.06 4.73
314 350 3.803082 CGCATGCACTTGGGTCCG 61.803 66.667 19.57 0.00 0.00 4.79
352 388 4.283467 TCTCTTTTGGTTGCTGTAGCTAGA 59.717 41.667 5.38 0.00 42.66 2.43
357 393 4.079980 TGGTTGCTGTAGCTAGAACAAA 57.920 40.909 8.17 0.00 42.66 2.83
358 394 4.065088 TGGTTGCTGTAGCTAGAACAAAG 58.935 43.478 8.17 0.00 42.66 2.77
359 395 3.437049 GGTTGCTGTAGCTAGAACAAAGG 59.563 47.826 8.17 0.00 42.66 3.11
360 396 3.334583 TGCTGTAGCTAGAACAAAGGG 57.665 47.619 5.38 0.00 42.66 3.95
382 424 5.411053 GGGAGATCTTCTCTTTTGTGTTCTG 59.589 44.000 0.00 0.00 42.95 3.02
385 427 6.595682 AGATCTTCTCTTTTGTGTTCTGGAA 58.404 36.000 0.00 0.00 0.00 3.53
448 490 4.059511 CCATGTGATTATTACGCCGGTTA 58.940 43.478 1.90 0.00 0.00 2.85
490 535 0.682852 TATGGGCGTATGGCAGTACC 59.317 55.000 11.05 0.00 46.16 3.34
510 555 2.480416 CCGTAGAGATCCAGTGCAGAAC 60.480 54.545 0.00 0.00 0.00 3.01
646 691 0.675633 CAAACAGCTTGGGACTTGGG 59.324 55.000 0.00 0.00 0.00 4.12
828 874 4.135153 CCGCTGAGGCTGCTACGT 62.135 66.667 0.00 0.00 36.09 3.57
904 950 1.738099 CGCTCTCGGGTTGGTGAAG 60.738 63.158 0.00 0.00 0.00 3.02
1013 1059 0.465097 CAGCCGATGCAATTCTCCCT 60.465 55.000 0.00 0.00 41.13 4.20
1014 1060 0.179034 AGCCGATGCAATTCTCCCTC 60.179 55.000 0.00 0.00 41.13 4.30
1015 1061 1.502163 GCCGATGCAATTCTCCCTCG 61.502 60.000 0.00 0.00 37.47 4.63
1092 1138 7.555554 GTCCCTCTACAATACTACAAGAGTACA 59.444 40.741 0.00 0.00 43.56 2.90
1186 1232 3.951680 ACAAGTCCCGGCTATATTTTTGG 59.048 43.478 0.00 0.00 0.00 3.28
1227 1273 0.890683 GGATCTTGTTTGGGTGGCTG 59.109 55.000 0.00 0.00 0.00 4.85
1286 1332 1.032657 AGTCACCTGATCTCGGTCCG 61.033 60.000 4.39 4.39 30.82 4.79
1334 1383 3.334054 GGGAGGCCAGGCTTGTCT 61.334 66.667 12.43 0.00 0.00 3.41
1340 1389 0.957888 GGCCAGGCTTGTCTTCAGTC 60.958 60.000 12.43 0.00 0.00 3.51
1348 1397 5.009410 CAGGCTTGTCTTCAGTCTGAAATTT 59.991 40.000 15.97 0.00 35.73 1.82
1349 1398 5.595952 AGGCTTGTCTTCAGTCTGAAATTTT 59.404 36.000 15.97 0.00 35.73 1.82
1380 1429 6.893958 TTTCTGAGAGCATATTCGAAGTTC 57.106 37.500 3.35 0.00 0.00 3.01
1413 1467 8.987890 TGCAAAAATAAATCTAGCAGTTTTTCC 58.012 29.630 0.00 0.00 29.33 3.13
1417 1471 4.686839 AAATCTAGCAGTTTTTCCGCTC 57.313 40.909 0.00 0.00 37.20 5.03
1421 1475 0.606673 AGCAGTTTTTCCGCTCCCTC 60.607 55.000 0.00 0.00 0.00 4.30
1452 1542 6.097356 GCAACTTGTTAAAGGGGCTATTAAC 58.903 40.000 11.00 11.00 40.65 2.01
1453 1543 6.071560 GCAACTTGTTAAAGGGGCTATTAACT 60.072 38.462 15.75 1.24 40.79 2.24
1454 1544 7.524863 GCAACTTGTTAAAGGGGCTATTAACTT 60.525 37.037 15.75 5.45 40.79 2.66
1455 1545 8.364894 CAACTTGTTAAAGGGGCTATTAACTTT 58.635 33.333 15.75 0.00 40.79 2.66
1456 1546 7.892609 ACTTGTTAAAGGGGCTATTAACTTTG 58.107 34.615 15.75 10.70 40.79 2.77
1457 1547 6.275494 TGTTAAAGGGGCTATTAACTTTGC 57.725 37.500 15.75 0.00 40.79 3.68
1458 1548 5.775701 TGTTAAAGGGGCTATTAACTTTGCA 59.224 36.000 15.75 0.00 40.79 4.08
1459 1549 6.267928 TGTTAAAGGGGCTATTAACTTTGCAA 59.732 34.615 0.00 0.00 40.79 4.08
1460 1550 4.801330 AAGGGGCTATTAACTTTGCAAC 57.199 40.909 0.00 0.00 0.00 4.17
1461 1551 3.773560 AGGGGCTATTAACTTTGCAACA 58.226 40.909 0.00 0.00 0.00 3.33
1462 1552 4.156477 AGGGGCTATTAACTTTGCAACAA 58.844 39.130 0.00 0.00 0.00 2.83
1498 1588 5.064834 GGCCAGTAATTAAGAGTTACAGTGC 59.935 44.000 0.00 1.08 35.11 4.40
1500 1590 6.036191 GCCAGTAATTAAGAGTTACAGTGCTC 59.964 42.308 0.00 0.15 35.11 4.26
1521 1611 5.474578 TCCTCACATATCTCACATAAGCC 57.525 43.478 0.00 0.00 0.00 4.35
1522 1612 4.901250 TCCTCACATATCTCACATAAGCCA 59.099 41.667 0.00 0.00 0.00 4.75
1601 1698 4.516698 CGTTTCTATTATCTGCATGCCCTT 59.483 41.667 16.68 1.65 0.00 3.95
1609 1706 1.065199 TCTGCATGCCCTTTACTGGAG 60.065 52.381 16.68 1.28 0.00 3.86
1698 1926 0.584876 ACGCAAGAAACGGCTACAAC 59.415 50.000 0.00 0.00 43.62 3.32
1718 1946 2.205074 CACATCTCACGCTAATCCCAC 58.795 52.381 0.00 0.00 0.00 4.61
1872 2100 2.289694 GGAGGCTTCACTGTTTCTGCTA 60.290 50.000 0.00 0.00 0.00 3.49
1895 2123 8.887717 GCTATTCAGATTTACATGACTGTTTCT 58.112 33.333 0.00 0.00 36.79 2.52
1898 2126 5.412594 TCAGATTTACATGACTGTTTCTGCC 59.587 40.000 0.00 0.00 36.55 4.85
1914 2142 0.400213 TGCCGTTCAGGTTTGAGGAT 59.600 50.000 0.00 0.00 43.70 3.24
1995 2223 0.757188 ATCGGCGATTCCCTCTCTGT 60.757 55.000 18.14 0.00 0.00 3.41
2334 2834 2.032550 CCAAAACTCACTGCAGTGTCTG 59.967 50.000 38.41 30.42 45.76 3.51
2335 2835 2.679837 CAAAACTCACTGCAGTGTCTGT 59.320 45.455 38.41 30.95 45.76 3.41
2365 2870 6.231258 TGTGATGTTCAGCTCTTGATCTAT 57.769 37.500 0.00 0.00 35.27 1.98
2366 2871 6.047231 TGTGATGTTCAGCTCTTGATCTATG 58.953 40.000 0.00 0.00 35.27 2.23
2368 2873 6.538021 GTGATGTTCAGCTCTTGATCTATGTT 59.462 38.462 0.00 0.00 35.27 2.71
2376 2919 6.805271 CAGCTCTTGATCTATGTTTTGGTTTG 59.195 38.462 0.00 0.00 0.00 2.93
2381 2924 8.298854 TCTTGATCTATGTTTTGGTTTGTCATG 58.701 33.333 0.00 0.00 0.00 3.07
2779 3408 0.537188 ACAAGGAGAGCATGTACCCG 59.463 55.000 0.00 0.00 0.00 5.28
3078 3722 4.038282 TGCCCTGATGATATGTGCATTTTC 59.962 41.667 0.00 0.00 0.00 2.29
3134 3780 4.773323 AAGTAAGTGCAAAAGCCTGATC 57.227 40.909 0.00 0.00 0.00 2.92
3264 3913 4.486090 GACAGAATTCGCAGTCTCAGTAA 58.514 43.478 16.44 0.00 0.00 2.24
3265 3914 4.883083 ACAGAATTCGCAGTCTCAGTAAA 58.117 39.130 0.00 0.00 0.00 2.01
4177 4874 9.320352 TCATTAGAATGGCAATTCATCATTTTG 57.680 29.630 16.24 4.15 44.05 2.44
4234 4931 4.792804 GGAGAGCTGCAGGCCACC 62.793 72.222 17.12 7.75 43.05 4.61
4276 4973 1.191535 ACAGCGATGGCAACCTAGTA 58.808 50.000 5.32 0.00 43.41 1.82
4291 4988 2.095853 CCTAGTAGCATGTTTGTTGGCG 59.904 50.000 0.00 0.00 0.00 5.69
4306 5003 1.302192 GGCGCACAAGTTGGGAGTA 60.302 57.895 9.97 0.00 40.70 2.59
5216 5946 1.344438 TCTGCTCAGATGAACCGTGTT 59.656 47.619 0.00 0.00 31.41 3.32
5335 6065 6.147581 TCACGACATTTACTAGTTCTGACAC 58.852 40.000 0.00 0.00 0.00 3.67
5469 6199 2.093288 TGGTCCAGCTGAGATCATTGTC 60.093 50.000 17.39 0.00 0.00 3.18
5475 6205 1.063174 GCTGAGATCATTGTCAACGGC 59.937 52.381 0.00 0.00 0.00 5.68
5529 6259 4.400961 AAGGCCTCCGCACTGCTC 62.401 66.667 5.23 0.00 36.38 4.26
5881 6611 0.672889 TGTGCCATGACATTGCGTTT 59.327 45.000 6.98 0.00 0.00 3.60
5902 6632 6.293955 CGTTTGACCACCTTGATAATTTCAGT 60.294 38.462 0.00 0.00 35.27 3.41
6081 6811 0.599728 GATGGAGCACAGATCGGAGC 60.600 60.000 7.15 7.15 0.00 4.70
6084 6814 1.587613 GAGCACAGATCGGAGCGTC 60.588 63.158 9.33 4.78 0.00 5.19
6197 6931 0.604578 ATGGATGCTGTGTTGTTGGC 59.395 50.000 0.00 0.00 0.00 4.52
6393 7127 4.279420 ACAAAGACATGGCTTCCTTTCTTC 59.721 41.667 15.84 0.00 0.00 2.87
6535 7280 0.036010 TCTTGCCAAGCTAGCACCTC 60.036 55.000 18.83 3.83 40.69 3.85
6547 7292 1.678970 GCACCTCCATCCCACCAAC 60.679 63.158 0.00 0.00 0.00 3.77
6548 7293 1.000896 CACCTCCATCCCACCAACC 60.001 63.158 0.00 0.00 0.00 3.77
6549 7294 1.465188 ACCTCCATCCCACCAACCA 60.465 57.895 0.00 0.00 0.00 3.67
6553 7298 2.024464 CCTCCATCCCACCAACCAATTA 60.024 50.000 0.00 0.00 0.00 1.40
6556 7301 4.798882 TCCATCCCACCAACCAATTATAC 58.201 43.478 0.00 0.00 0.00 1.47
6557 7302 3.895041 CCATCCCACCAACCAATTATACC 59.105 47.826 0.00 0.00 0.00 2.73
6800 7549 6.702716 AAGGTAATTTCGTTCTTGTGGAAA 57.297 33.333 0.00 0.00 35.51 3.13
6938 7687 2.274760 AGGTACTCCCTCCGTCCG 59.725 66.667 0.00 0.00 40.71 4.79
6939 7688 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
6940 7689 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
6941 7690 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
6942 7691 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
6943 7692 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6944 7693 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
6945 7694 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
6946 7695 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
6947 7696 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
6948 7697 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6949 7698 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6950 7699 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
6951 7700 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
6952 7701 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
6953 7702 2.159393 CCGTCCGGAAATACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
6954 7703 3.103738 CGTCCGGAAATACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
6955 7704 3.181507 CGTCCGGAAATACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
6956 7705 4.672542 CGTCCGGAAATACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
6957 7706 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
6958 7707 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
6959 7708 5.808540 TCCGGAAATACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
6960 7709 5.006358 CCGGAAATACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
6961 7710 5.808540 CGGAAATACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
6962 7711 6.479001 CGGAAATACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
6963 7712 7.650504 CGGAAATACTTGTCGTAGAAATGGATA 59.349 37.037 0.00 0.00 39.69 2.59
6964 7713 9.490379 GGAAATACTTGTCGTAGAAATGGATAT 57.510 33.333 0.00 0.00 39.69 1.63
6970 7719 9.273016 ACTTGTCGTAGAAATGGATATAAATGG 57.727 33.333 0.00 0.00 39.69 3.16
6971 7720 9.273016 CTTGTCGTAGAAATGGATATAAATGGT 57.727 33.333 0.00 0.00 39.69 3.55
6972 7721 9.621629 TTGTCGTAGAAATGGATATAAATGGTT 57.378 29.630 0.00 0.00 39.69 3.67
6973 7722 9.051679 TGTCGTAGAAATGGATATAAATGGTTG 57.948 33.333 0.00 0.00 39.69 3.77
6974 7723 9.052759 GTCGTAGAAATGGATATAAATGGTTGT 57.947 33.333 0.00 0.00 39.69 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.767255 GTCACAGGGGAGCAGGCG 62.767 72.222 0.00 0.00 0.00 5.52
77 78 2.827322 CCATGAAAAGAAGCCATGTCCA 59.173 45.455 0.00 0.00 36.77 4.02
78 79 2.827921 ACCATGAAAAGAAGCCATGTCC 59.172 45.455 0.00 0.00 36.77 4.02
79 80 4.702131 AGTACCATGAAAAGAAGCCATGTC 59.298 41.667 0.00 0.00 36.77 3.06
82 83 4.082026 GCAAGTACCATGAAAAGAAGCCAT 60.082 41.667 0.00 0.00 0.00 4.40
83 84 3.255642 GCAAGTACCATGAAAAGAAGCCA 59.744 43.478 0.00 0.00 0.00 4.75
84 85 3.255642 TGCAAGTACCATGAAAAGAAGCC 59.744 43.478 0.00 0.00 0.00 4.35
97 122 4.417426 ACCCATACTATGTGCAAGTACC 57.583 45.455 0.00 0.00 32.47 3.34
104 129 3.128349 CAACCGTACCCATACTATGTGC 58.872 50.000 0.00 0.00 0.00 4.57
128 163 1.144057 CCACAGACCTCCGTATGGC 59.856 63.158 0.00 0.00 35.44 4.40
130 165 1.823295 CCCCACAGACCTCCGTATG 59.177 63.158 0.00 0.00 37.24 2.39
173 208 0.961857 ATTTCGCATGCAGCACCTCA 60.962 50.000 19.57 0.00 46.13 3.86
184 219 6.410540 AGAAAGTAGAAGGAGAATTTCGCAT 58.589 36.000 2.54 0.00 33.12 4.73
185 220 5.794894 AGAAAGTAGAAGGAGAATTTCGCA 58.205 37.500 2.54 0.00 33.12 5.10
186 221 6.369065 TGAAGAAAGTAGAAGGAGAATTTCGC 59.631 38.462 0.00 0.00 33.12 4.70
187 222 7.412455 GCTGAAGAAAGTAGAAGGAGAATTTCG 60.412 40.741 0.00 0.00 33.12 3.46
197 232 6.309251 CGAACCTAAGCTGAAGAAAGTAGAAG 59.691 42.308 0.00 0.00 0.00 2.85
203 238 4.810790 TCTCGAACCTAAGCTGAAGAAAG 58.189 43.478 0.00 0.00 0.00 2.62
253 288 3.426695 CCAAATTGATCGACAAGCCTGAC 60.427 47.826 0.00 0.00 42.02 3.51
264 299 4.168760 GACCAAGAAAGCCAAATTGATCG 58.831 43.478 0.00 0.00 0.00 3.69
268 303 2.634453 AGGGACCAAGAAAGCCAAATTG 59.366 45.455 0.00 0.00 0.00 2.32
276 311 0.529378 GCATGCAGGGACCAAGAAAG 59.471 55.000 14.21 0.00 0.00 2.62
277 312 0.178967 TGCATGCAGGGACCAAGAAA 60.179 50.000 18.46 0.00 0.00 2.52
298 333 3.443045 CCGGACCCAAGTGCATGC 61.443 66.667 11.82 11.82 33.05 4.06
299 334 2.751436 CCCGGACCCAAGTGCATG 60.751 66.667 0.73 0.00 33.05 4.06
300 335 4.740822 GCCCGGACCCAAGTGCAT 62.741 66.667 0.73 0.00 33.05 3.96
314 350 0.399806 AGAGAAGATCTCCAGGGCCC 60.400 60.000 16.46 16.46 44.42 5.80
326 362 3.815401 GCTACAGCAACCAAAAGAGAAGA 59.185 43.478 0.00 0.00 41.59 2.87
352 388 6.264067 CACAAAAGAGAAGATCTCCCTTTGTT 59.736 38.462 22.67 13.12 46.57 2.83
357 393 5.309282 AGAACACAAAAGAGAAGATCTCCCT 59.691 40.000 0.00 0.00 44.42 4.20
358 394 5.411053 CAGAACACAAAAGAGAAGATCTCCC 59.589 44.000 0.00 0.00 44.42 4.30
359 395 5.411053 CCAGAACACAAAAGAGAAGATCTCC 59.589 44.000 0.00 0.00 44.42 3.71
360 396 6.226787 TCCAGAACACAAAAGAGAAGATCTC 58.773 40.000 0.00 0.00 43.70 2.75
382 424 5.367060 ACTCTACCATCCTAGTTCCAATTCC 59.633 44.000 0.00 0.00 0.00 3.01
385 427 4.656112 CCACTCTACCATCCTAGTTCCAAT 59.344 45.833 0.00 0.00 0.00 3.16
448 490 2.376109 CCTACACCGATCCAGTGTACT 58.624 52.381 15.85 0.15 46.37 2.73
490 535 2.425312 AGTTCTGCACTGGATCTCTACG 59.575 50.000 0.00 0.00 32.83 3.51
518 563 1.440893 CCTGATCTCAGTCCGCAGG 59.559 63.158 6.46 0.00 45.42 4.85
519 564 0.179116 CACCTGATCTCAGTCCGCAG 60.179 60.000 6.46 0.00 42.27 5.18
520 565 0.611896 TCACCTGATCTCAGTCCGCA 60.612 55.000 6.46 0.00 42.27 5.69
521 566 0.179124 GTCACCTGATCTCAGTCCGC 60.179 60.000 6.46 0.00 42.27 5.54
522 567 1.468985 AGTCACCTGATCTCAGTCCG 58.531 55.000 6.46 0.00 42.27 4.79
646 691 0.247894 TGTCGTGTGCTTGAAAACGC 60.248 50.000 0.00 0.00 36.04 4.84
904 950 0.801251 CTTGCACTAGCTCCTGCAAC 59.199 55.000 21.37 0.00 46.07 4.17
1013 1059 2.282958 AGGCGAACAGGGACTCGA 60.283 61.111 0.00 0.00 34.60 4.04
1014 1060 2.182030 GAGGCGAACAGGGACTCG 59.818 66.667 0.00 0.00 34.60 4.18
1015 1061 2.579738 GGAGGCGAACAGGGACTC 59.420 66.667 0.00 0.00 34.60 3.36
1092 1138 4.989168 GGATCAAGTCAACGTTGTAGTCTT 59.011 41.667 26.47 20.94 0.00 3.01
1186 1232 2.906354 ACGGACAATATTGAGCCAGAC 58.094 47.619 22.16 3.28 0.00 3.51
1227 1273 1.621814 TGTACCTTGCGCCCCTATATC 59.378 52.381 4.18 0.00 0.00 1.63
1286 1332 1.303309 GTCACAGGCATGCAGGATAC 58.697 55.000 21.36 7.96 0.00 2.24
1334 1383 9.573133 GAAAACAGAAGAAAATTTCAGACTGAA 57.427 29.630 22.52 13.99 34.03 3.02
1340 1389 9.448294 CTCTCAGAAAACAGAAGAAAATTTCAG 57.552 33.333 8.55 0.00 33.53 3.02
1348 1397 7.063898 CGAATATGCTCTCAGAAAACAGAAGAA 59.936 37.037 0.00 0.00 0.00 2.52
1349 1398 6.533012 CGAATATGCTCTCAGAAAACAGAAGA 59.467 38.462 0.00 0.00 0.00 2.87
1380 1429 5.691754 GCTAGATTTATTTTTGCATTCCGGG 59.308 40.000 0.00 0.00 0.00 5.73
1412 1466 1.401905 GTTGCATAAAAGAGGGAGCGG 59.598 52.381 0.00 0.00 0.00 5.52
1413 1467 2.359900 AGTTGCATAAAAGAGGGAGCG 58.640 47.619 0.00 0.00 0.00 5.03
1417 1471 6.868339 CCTTTAACAAGTTGCATAAAAGAGGG 59.132 38.462 15.75 10.13 0.00 4.30
1421 1475 5.408299 GCCCCTTTAACAAGTTGCATAAAAG 59.592 40.000 1.81 7.62 0.00 2.27
1452 1542 5.630061 CCTTGGAAAAACTTTGTTGCAAAG 58.370 37.500 17.04 17.04 35.10 2.77
1453 1543 4.083057 GCCTTGGAAAAACTTTGTTGCAAA 60.083 37.500 0.00 0.00 35.10 3.68
1454 1544 3.438434 GCCTTGGAAAAACTTTGTTGCAA 59.562 39.130 0.00 0.00 34.45 4.08
1455 1545 3.006247 GCCTTGGAAAAACTTTGTTGCA 58.994 40.909 0.00 0.00 0.00 4.08
1456 1546 2.354510 GGCCTTGGAAAAACTTTGTTGC 59.645 45.455 0.00 0.00 0.00 4.17
1457 1547 3.604582 TGGCCTTGGAAAAACTTTGTTG 58.395 40.909 3.32 0.00 0.00 3.33
1458 1548 3.263170 ACTGGCCTTGGAAAAACTTTGTT 59.737 39.130 3.32 0.00 0.00 2.83
1459 1549 2.837591 ACTGGCCTTGGAAAAACTTTGT 59.162 40.909 3.32 0.00 0.00 2.83
1460 1550 3.541996 ACTGGCCTTGGAAAAACTTTG 57.458 42.857 3.32 0.00 0.00 2.77
1461 1551 5.887214 ATTACTGGCCTTGGAAAAACTTT 57.113 34.783 3.32 0.00 0.00 2.66
1462 1552 5.887214 AATTACTGGCCTTGGAAAAACTT 57.113 34.783 3.32 0.00 0.00 2.66
1498 1588 5.011431 TGGCTTATGTGAGATATGTGAGGAG 59.989 44.000 0.00 0.00 0.00 3.69
1500 1590 4.993584 GTGGCTTATGTGAGATATGTGAGG 59.006 45.833 0.00 0.00 0.00 3.86
1521 1611 2.708051 ACATGATCCACAGAGCAAGTG 58.292 47.619 0.00 0.00 42.75 3.16
1522 1612 2.708051 CACATGATCCACAGAGCAAGT 58.292 47.619 0.00 0.00 42.75 3.16
1528 1618 2.237893 AGACATGCACATGATCCACAGA 59.762 45.455 17.19 0.00 41.20 3.41
1529 1619 2.640184 AGACATGCACATGATCCACAG 58.360 47.619 17.19 0.00 41.20 3.66
1601 1698 1.271840 ATTGCCGGGCTCTCCAGTAA 61.272 55.000 21.46 3.42 34.36 2.24
1609 1706 1.887707 CGGAACTATTGCCGGGCTC 60.888 63.158 21.46 7.88 43.67 4.70
1698 1926 2.205074 GTGGGATTAGCGTGAGATGTG 58.795 52.381 0.00 0.00 0.00 3.21
1872 2100 7.362401 GGCAGAAACAGTCATGTAAATCTGAAT 60.362 37.037 16.47 0.00 42.04 2.57
1895 2123 0.400213 ATCCTCAAACCTGAACGGCA 59.600 50.000 0.00 0.00 35.61 5.69
1898 2126 2.972625 TGCTATCCTCAAACCTGAACG 58.027 47.619 0.00 0.00 0.00 3.95
1914 2142 1.635817 GGCAGTCTCCCCCATTGCTA 61.636 60.000 0.00 0.00 35.23 3.49
1995 2223 0.950555 GACGAGCTCATTGGTGTGCA 60.951 55.000 15.40 0.00 44.97 4.57
2045 2273 1.153409 CAGCCAGTCTAGCCTGCAG 60.153 63.158 6.78 6.78 0.00 4.41
2334 2834 3.341823 AGCTGAACATCACAGGAATGAC 58.658 45.455 0.00 0.00 36.09 3.06
2335 2835 3.262660 AGAGCTGAACATCACAGGAATGA 59.737 43.478 0.00 0.00 36.09 2.57
2365 2870 2.762887 TCCTGCATGACAAACCAAAACA 59.237 40.909 0.00 0.00 0.00 2.83
2366 2871 3.383761 CTCCTGCATGACAAACCAAAAC 58.616 45.455 0.00 0.00 0.00 2.43
2368 2873 1.962807 CCTCCTGCATGACAAACCAAA 59.037 47.619 0.00 0.00 0.00 3.28
2381 2924 0.743097 GGATGACAATTGCCTCCTGC 59.257 55.000 5.05 0.00 41.77 4.85
2779 3408 0.110644 CGCGAAGGAAGTTGAGCAAC 60.111 55.000 0.00 5.24 41.45 4.17
3134 3780 6.344500 ACTTTCAGTTGGCTCATAGATAGTG 58.656 40.000 0.00 0.00 0.00 2.74
3264 3913 0.109342 CCTGAGTGCACCTTGGAGTT 59.891 55.000 14.63 0.00 0.00 3.01
3265 3914 0.764369 TCCTGAGTGCACCTTGGAGT 60.764 55.000 14.63 0.00 0.00 3.85
4234 4931 3.019564 GTTTCCAATGATCAGGTCAGGG 58.980 50.000 0.09 0.00 40.92 4.45
4276 4973 1.300080 GTGCGCCAACAAACATGCT 60.300 52.632 4.18 0.00 0.00 3.79
4291 4988 2.846193 TGAGTTACTCCCAACTTGTGC 58.154 47.619 10.10 0.00 38.86 4.57
4306 5003 4.503296 GGGGATAGAATGCGTACATGAGTT 60.503 45.833 0.00 0.00 36.36 3.01
4392 5089 3.951979 GCATGAGCAATGGTACACTAC 57.048 47.619 0.00 0.00 41.19 2.73
4895 5616 8.276252 TGGTAGGCAATCTGTTTTATAAGAAC 57.724 34.615 0.00 4.53 0.00 3.01
5216 5946 0.175760 GGTAGAGCTCACCATTGCGA 59.824 55.000 22.75 0.00 36.01 5.10
5475 6205 1.518572 GATGTGGTAGCCGGACACG 60.519 63.158 5.05 0.00 37.92 4.49
5881 6611 5.411361 CGAACTGAAATTATCAAGGTGGTCA 59.589 40.000 0.00 0.00 37.67 4.02
5902 6632 9.667107 AAATTAAGTCTCAAGATATGAACCGAA 57.333 29.630 0.00 0.00 37.67 4.30
6081 6811 2.159517 GGACAAGCAAAGGCATAAGACG 60.160 50.000 0.00 0.00 44.61 4.18
6084 6814 4.240096 CAAAGGACAAGCAAAGGCATAAG 58.760 43.478 0.00 0.00 44.61 1.73
6197 6931 8.722480 TCAAATACTGTATCCATGAGAAAGTG 57.278 34.615 0.00 0.00 0.00 3.16
6489 7223 8.498054 AGGAAGTTCAATGTGTATGTAGATTG 57.502 34.615 5.01 0.00 33.86 2.67
6535 7280 3.895041 GGTATAATTGGTTGGTGGGATGG 59.105 47.826 0.00 0.00 0.00 3.51
6547 7292 5.280215 GGAGGATGGAGAGTGGTATAATTGG 60.280 48.000 0.00 0.00 0.00 3.16
6548 7293 5.545723 AGGAGGATGGAGAGTGGTATAATTG 59.454 44.000 0.00 0.00 0.00 2.32
6549 7294 5.731924 AGGAGGATGGAGAGTGGTATAATT 58.268 41.667 0.00 0.00 0.00 1.40
6553 7298 2.158234 GGAGGAGGATGGAGAGTGGTAT 60.158 54.545 0.00 0.00 0.00 2.73
6556 7301 1.112315 CGGAGGAGGATGGAGAGTGG 61.112 65.000 0.00 0.00 0.00 4.00
6557 7302 1.743321 GCGGAGGAGGATGGAGAGTG 61.743 65.000 0.00 0.00 0.00 3.51
6677 7423 2.900546 AGTGCACTAAGGTCTTGTAGCT 59.099 45.455 20.16 0.00 37.60 3.32
6800 7549 0.838987 TAGGGTGCGAGGGGTTCTTT 60.839 55.000 0.00 0.00 0.00 2.52
6868 7617 6.842280 TGTAGCCCTATCAGGTATTTTAGTCA 59.158 38.462 0.00 0.00 31.93 3.41
6869 7618 7.299246 TGTAGCCCTATCAGGTATTTTAGTC 57.701 40.000 0.00 0.00 31.93 2.59
6880 7629 4.841246 AGGGAGTTAATGTAGCCCTATCAG 59.159 45.833 0.00 0.00 47.00 2.90
6881 7630 4.827789 AGGGAGTTAATGTAGCCCTATCA 58.172 43.478 0.00 0.00 47.00 2.15
6928 7677 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
6929 7678 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6930 7679 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
6931 7680 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
6932 7681 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
6933 7682 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
6934 7683 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
6935 7684 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
6936 7685 5.006358 CCATTTCTACGACAAGTATTTCCGG 59.994 44.000 0.00 0.00 34.34 5.14
6937 7686 5.808540 TCCATTTCTACGACAAGTATTTCCG 59.191 40.000 0.00 0.00 34.34 4.30
6938 7687 7.787725 ATCCATTTCTACGACAAGTATTTCC 57.212 36.000 0.00 0.00 34.34 3.13
6944 7693 9.273016 CCATTTATATCCATTTCTACGACAAGT 57.727 33.333 0.00 0.00 0.00 3.16
6945 7694 9.273016 ACCATTTATATCCATTTCTACGACAAG 57.727 33.333 0.00 0.00 0.00 3.16
6946 7695 9.621629 AACCATTTATATCCATTTCTACGACAA 57.378 29.630 0.00 0.00 0.00 3.18
6947 7696 9.051679 CAACCATTTATATCCATTTCTACGACA 57.948 33.333 0.00 0.00 0.00 4.35
6948 7697 9.052759 ACAACCATTTATATCCATTTCTACGAC 57.947 33.333 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.